cran: STAR | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1008295

Age- and stress-associated C. elegans granulins impair lysosomal function and induce a compensatory HLH-30/TFEB transcriptional response
Cited by: 17
Author(s): Victoria Butler, Fuying Gao, Christian I. Corrales, Wilian A. Cortopassi, Benjamı́n Caballero, Mihir Vohra, Kaveh Ashrafi, Ana María Cuervo, Matthew P. Jacobson, Giovanni Coppola, Aimee W. Kao
Software Mentions: 2
Published: almost 7 years ago

10.3390/life11080846

Establishment of an Intradermal Ear Injection Model of IL-17A and IL-36γ as a Tool to Investigate the Psoriatic Cytokine Network
Cited by: 1
Author(s): David Kluwig, Sebastian Huth, Ali T. Abdallah, Carolina M. Pfaff, Katharina Fietkau, Laura Huth, Yvonne Marquardt, Jens Malte Baron, Bernhard Lüscher
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41375-020-0771-7

Investigating the role of the innate immune response in relapse or blast crisis in chronic myeloid leukemia
Cited by: 7
Author(s): Weiqi Huang, Bin Liu, Elizabeth A. Eklund
Software Mentions: 2
Published: over 6 years ago

10.1038/s41375-021-01146-z

Menin is necessary for long term maintenance of meningioma-1 driven leukemia
Cited by: 8
Author(s): Clara Libbrecht, Hongbo Xie, Molly C. Kingsley, Jessica N. Haladyna, Simone S. Riedel, Fatemeh Alikarami, Alexandra Lenard, Gerard M. McGeehan, Patricia Ernst, Kathrin M. Bernt
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.54603

Coverage-dependent bias creates the appearance of binary splicing in single cells
Cited by: 32
Author(s): Carlos Fernando Buen Abad Najar, Nir Yosef, Liana F. Lareau
Software Mentions: 2
Published: about 6 years ago

10.1093/gigascience/giaa037

The gene-rich genome of the scallop Pecten maximus
Cited by: 46
Author(s): Nathan J. Kenny, Shane McCarthy, Olga Dudchenko, Katherine James, Emma Betteridge, Craig Corton, Jale Dolucan, Daniel Mead, Karen Oliver, Arina D. Omer, Sarah Pelan, Yan Ryan, Ying Sims, Jason Skelton, Michelle Smith, James Torrance, David Weisz, Anil Wipat, E Aiden, Kerstin Howe, Suzanne T. Williams
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-45973-8

Chronic disturbance in the thalamus following cranial irradiation to the developing mouse brain
Cited by: 1
Author(s): Martina Boström, Yohanna Eriksson, Jolie Danial, Thomas Björk‐Eriksson, Marie Kalm
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.54659

Osterix-Cre marks distinct subsets of CD45- and CD45+ stromal populations in extra-skeletal tumors with pro-tumorigenic characteristics
Cited by: 9
Author(s): Biancamaria Ricci, Eric Tycksen, Hamza Celik, Jad I. Belle, Francesca Fontana, Roberto Civitelli, Roberta Faccio
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-46656-0

REV-ERBα and REV-ERBβ function as key factors regulating Mammalian Circadian Output
Cited by: 57
Author(s): Ryosuke Ikeda, Yoshiki Tsuchiya, Nobuya Koike, Yasuhiro Umemura, Hitoshi Inokawa, Ryutaro Ono, Maho Inoue, Yuh Sasawaki, Tess Grieten, Naoki Okubo, Kazuya Ikoma, Hiroyoshi Fujiwara, Toshikazu Kubo, Kazuhiro Yagita
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-46462-8

HLA class II-Restricted CD8+ T cells in HIV-1 Virus Controllers
Cited by: 5
Author(s): Tinashe Nyanhete, Alyse Frisbee, Todd Bradley, William J. Faison, Elizabeth Robins, Tamika L. Payne, Stephanie A. Freel, Sheetal Sawant, Kent J. Weinhold, Kevin Wiehe, Barton F. Haynes, Guido Ferrari, Qi-Jing Li, M. Anthony Moody, Georgia D. Tomaras
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pgen.1009589

Transcriptomic characterization of cancer-testis antigens identifies MAGEA3 as a driver of tumor progression in hepatocellular carcinoma
Cited by: 9
Author(s): Amanda Craig, Teresa García‐Lezana, Marina Ruiz de Galarreta, Carlos Villacorta‐Martin, Edgar Kozlova, Sebastião N. Martins-Filho, Johann von Felden, Mehmet Eren Ahsen, Erin Bresnahan, Gabriela Hernandez-Meza, Ismaïl Labgaa, Delia D’Avola, Myron Schwartz, Josep M. Llovet, Daniela Sia, Swan N. Thung, Bojan Losic, Amaia Lujambio, Augusto Villanueva
Software Mentions: 2
Published: about 5 years ago

10.1172/jci.insight.94716

Molecular characterization of the transition from acute to chronic kidney injury following ischemia/reperfusion
Cited by: 190
Author(s): Jing Liu, Sanjeev Kumar, Egor Dolzhenko, Gregory F. Alvarado, Jinjin Guo, Can Lü, Yibu Chen, Meng Li, Mark C. Dessing, Riana K. Parvez, Pietro E Cippà, A. Michaela Krautzberger, Gohar Saribekyan, Andrew D. Smith, Andrew P. McMahon
Software Mentions: 2
Published: almost 9 years ago

10.1172/jci.insight.120794

Hepatocyte ALOXE3 is induced during adaptive fasting and enhances insulin sensitivity by activating hepatic PPARγ
Cited by: 19
Author(s): Cassandra B. Higgins, Yiming Zhang, Allyson L. Mayer, Hideji Fujiwara, Alicyn I Stothard, Mark Graham, Benjamin M. Swarts, Brian J. DeBosch
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.celrep.2018.12.094

Impaired LXRα Phosphorylation Attenuates Progression of Fatty Liver Disease
Cited by: 41
Author(s): Natalia Bécares, Matthew Gage, Maud Voisin, Elina Shrestha, Lucia Martin-Gutierrez, Ning Liang, Rikah Louie, Benoît Pourcet, Óscar M. Pello, Tu Vinh Luong, Saioa Goñi, César Pichardo‐Almarza, Hanne Røberg-Larsen, Vanessa Díaz‐Zuccarini, Knut R. Steffensen, Alastair O’Brien, Michael J. Garabedian, Krista Rombouts, Eckardt Treuter, Inés Pineda-Torra
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms21041455

Evaluation of Transcriptomic Regulations behind Metabolic Syndrome in Obese and Lean Subjects
Cited by: 10
Author(s): Magdalena Paczkowska–Abdulsalam, Magdalena Niemira, Agnieszka Bielska, Anna Szałkowska, Beata Anna Raczkowska, Sini Junttila, Attila Gyenesei, Edyta Adamska-Patruno, Katarzyna Maliszewska, Łukasz Szczerbiński, Adam Krętowski
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1009817

A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiation
Cited by: 11
Author(s): Pengjie Hu, Hao Ding, Ling Shen, Guang‐Jun He, Huimin Liu, Xiuyun Tian, Changyu Tao, Xiangzheng Bai, Jingnan Liang, Cheng Jin, Xinping Xu, Ence Yang, Linqi Wang
Software Mentions: 2
Published: almost 5 years ago

10.3390/cells9071600

Loss of ZC4H2 and RNF220 Inhibits Neural Stem Cell Proliferation and Promotes Neuronal Differentiation
Cited by: 9
Author(s): Longlong Zhang, Maosen Ye, Liang Zhu, Jingmei Cha, Chaocui Li, Yong-Gang Yao, Bingyu Mao
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pgen.1007272

Long-lived rodents reveal signatures of positive selection in genes associated with lifespan
Cited by: 41
Author(s): Arne Sahm, Martin Bens, Karol Szafranski, Susanne Holtze, Marco Groth, Matthias Görlach, Cornelis F. Calkhoven, Christine Müller, Matthias Schwab, Johann M. Kraus, Hans A. Kestler, Alessandro Cellerino, Hynek Burda, Thomas B. Hildebrandt, Philip Dammann, Matthias Platzer
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-47659-7

Colorectal cancer cells respond differentially to autophagy inhibition in vivo
Cited by: 42
Author(s): Annie Lauzier, Josiann Normandeau-Guimond, Vanessa Vaillancourt-Lavigueur, Vincent Boivin, Martine Charbonneau, Nathalie Rivard, Michelle S. Scott, Claire M. Dubois, Steve Jean
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-46916-z

Constraints to counting bioluminescence producing cells by a commonly used transgene promoter and its implications for experimental design
Cited by: 5
Author(s): Eman Mosaad, Kathryn Futrega, Inge Seim, Brian Gloss, Karen Chambers, Judith A. Clements, Michael Doran
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms18040805

Radiogenomic Analysis of Oncological Data: A Technical Survey
Cited by: 97
Author(s): Mariarosaria Incoronato, Marco Aiello, Teresa Infante, Carlo Cavaliere, Anna Grimaldi, Peppino Mirabelli, Serena Monti, Marco Salvatore
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms18061110

Validation of Splicing Events in Transcriptome Sequencing Data
Cited by: 6
Author(s): Wolfgang Kaisers, Johannes Ptok, Holger Schwender, Heiner Schaal
Software Mentions: 2
Published: about 9 years ago

10.1172/jci.insight.139043

Epigenetic silencing of CD4 expression in nonpathogenic SIV infection in African green monkeys
Cited by: 8
Author(s): Joseph C. Mudd, Stephen Lai, Sanjana Shah, Andrew R. Rahmberg, Jacob K. Flynn, Carly E. Starke, Molly Perkins, Amy Ransier, Samuel Darko, Daniel C. Douek, Vanessa M. Hirsch, Mark J. Cameron, Jason M. Brenchley
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.139628

PFKFB3-mediated glycolysis rescues myopathic outcomes in the ischemic limb
Cited by: 20
Author(s): Terence E. Ryan, Cameron A. Schmidt, Michael D. Tarpey, Adam J. Amorese, Dean T. Yamaguchi, Emma J. Goldberg, Melissa Mae R. Inigo, Reema Karnekar, Allison R. O’Rourke, James M. Ervasti, Patricia Brophy, Thomas D. Green, P. Darrell Neufer, Kelsey H. Fisher‐Wellman, Espen E. Spangenburg, Joseph M. McClung
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1004951

Modeling of the Human Alveolar Rhabdomyosarcoma Pax3-Foxo1 Chromosome Translocation in Mouse Myoblasts Using CRISPR-Cas9 Nuclease
Cited by: 51
Author(s): Irina Lagutina, Virginia Valentine, Fabrizio Picchione, Frank Harwood, Marcus B. Valentine, Bárbara Villarejo-Balcells, Jaime J. Carvajal, Gerard Grosveld
Software Mentions: 2
Published: over 11 years ago

10.1016/j.celrep.2020.01.069

Nef-Mediated CD3-TCR Downmodulation Dampens Acute Inflammation and Promotes SIV Immune Evasion
Cited by: 6
Author(s): Simone Joas, Ulrike Sauermann, Berit Roshani, Antonina Klippert, Maria Daskalaki, Kerstin Mätz‐Rensing, Nicole Stolte-Leeb, Anke Heigele, Gregory K. Tharp, Prachi Mehrotra Gupta, Sydney A. Nelson, Steven E. Bosinger, Laura M. Parodi, Luis D. Giavedoni, Guido Silvestri, Daniel Sauter, Christiane Stahl–Hennig∥, Frank Kirchhoff
Software Mentions: 2
Published: over 6 years ago

10.3390/cells9061371

Intrinsic Abnormalities of Cystic Fibrosis Airway Connective Tissue Revealed by an In Vitro 3D Stromal Model
Cited by: 5
Author(s): Claudia Mazio, Laura S Scognamiglio, Rossella De Cegli, Luis J V Galietta, Diego di Bernardo, Costantino Casale, Francesco Urciuolo, Giorgia Imparato, Paolo Antonio Netti
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-49551-w

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes
Cited by: 44
Author(s): Carina Félix, Rodrigo Meneses, Micael F. M. Gonçalves, Laurentijn Tilleman, Ana Sofia Duarte, Jesús V. Jorrín Novo, Yves Van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Ana Cristina Esteves, Artur Alves
Software Mentions: 2
Published: almost 7 years ago

10.1172/jci.insight.139163

ROS-producing immature neutrophils in giant cell arteritis are linked to vascular pathologies
Cited by: 42
Author(s): Lihui Wang, Zhichao Ai, Tariq E. Khoyratty, Kristina Zec, Hayley L. Eames, Erinke van Grinsven, Alison Hudak, Susan Morris, David Ahern, Claudia Monaco, Evgeniy Eruslanov, Raashid Luqmani, Irina A. Udalova
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2015.00172

Crown traits of coniferous trees and their relation to shade tolerance can differ with leaf type: a biophysical demonstration using computed tomography scanning data
Cited by: 16
Author(s): Pierre Dutilleul, Liwen Han, Fernando Valladares, Christian Messier
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1005001

Discovery of CTCF-Sensitive Cis-Spliced Fusion RNAs between Adjacent Genes in Human Prostate Cells
Cited by: 71
Author(s): Fujun Qin, Zhenguo Song, Mihaela Babiceanu, Yansu Song, Loryn Facemire, Ritambhara Singh, Mazhar Adli, Hui Li
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1007058

Gli3 is a negative regulator of Tas1r3-expressing taste cells
Cited by: 25
Author(s): Yumei Qin, Sunil K. Sukumaran, Masafumi Jyotaki, Kevin Redding, Peihua Jiang, Robert F. Margolskee
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.30919

ketu mutant mice uncover an essential meiotic function for the ancient RNA helicase YTHDC2
Cited by: 118
Author(s): Devanshi Jain, M. Rhyan Puno, Cem Meydan, Nathalie Lailler, Christopher E. Mason, Christopher D. Lima, Kathryn V. Anderson, Scott Keeney
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-88703-9

Combined VEGFR and MAPK pathway inhibition in angiosarcoma
Cited by: 13
Author(s): Michael J. Wagner, Yasmin Lyons, Jean H. Siedel, Robert Dood, Archana S. Nagaraja, Monika Haemmerle, Lingegowda S. Mangala, Pritha Chanana, Alexander J. Lazar, Wei Lien Wang, Vinod Ravi, Eric C. Holland, Anil K. Sood
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89252-x

Effect of plane of nutrition in early life on the transcriptome of visceral adipose tissue in Angus heifer calves
Cited by: 8
Author(s): Kate Keogh, A. K. Kelly, David A. Kenny
Software Mentions: 2
Published: about 5 years ago

10.1172/jci.insight.136093

MyD88/CD40 signaling retains CAR T cells in a less differentiated state
Cited by: 33
Author(s): Brooke L. Prinzing, Patrick Schreiner, Matthew Bell, Yiping Fan, Giedre Krenciute, Stephen Gottschalk
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00590

The Genetic Regulation of Alternative Splicing in Populus deltoides
Cited by: 5
Author(s): Jerald D. Noble, Kelly M. Balmant, Christopher Dervinis, Gustavo de los Campos, M. D. V. de Resende, Matias Kirst, W. Brad Barbazuk
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms19051485

PIMT/NCOA6IP Deletion in the Mouse Heart Causes Delayed Cardiomyopathy Attributable to Perturbation in Energy Metabolism
Cited by: 8
Author(s): Yuzhi Jia, Ning Liu, Navin Viswakarma, Ruya Sun, Mathew J. Schipma, Shu Meng, Edward B. Thorp, Yashpal S. Kanwar, Bayar Thimmapaya, Janardan K. Reddy
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-89052-3

Figla promotes secondary follicle growth in mature mice
Cited by: 5
Author(s): Asuka Okunomiya, Akihito Horie, Hirohiko Tani, Yukiyasu Sato, Shiro Takamatsu, J.B. Brown, Miki Sugimoto, Junzo Hamanishi, Eiji Kondoh, Noriomi Matsumura, Masaki Mandai
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89630-5

Identification and Classification of Rare Variants in NPC1 and NPC2 in Quebec
Cited by: 2
Author(s): Lahoud Touma, Marjorie Labrecque, Martine Tétreault, Antoine Duquette
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-89921-x

Dual RNA-seq analysis of in vitro infection multiplicity and RNA depletion methods in Chlamydia-infected epithelial cells
Cited by: 5
Author(s): Regan J. Hayward, Michael S. Humphrys, Wilhelmina M. Huston, Garry S. A. Myers
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.30094

Dissection of affinity captured LINE-1 macromolecular complexes
Cited by: 59
Author(s): Martin S. Taylor, Ilya Altukhov, Kelly R. Molloy, Paolo Mita, Hua Jiang, Emily M. Adney, Aleksandra Wudzinska, Sana Badri, Dimitry D Ischenko, George Eng, Kathleen H. Burns, David Fenyö, Brian T. Chait, Dmitry Alexeev, Michael P. Rout, Jef D. Boeke, John LaCava
Software Mentions: 2
Published: over 8 years ago

10.1016/j.celrep.2020.108643

Transcription levels of a noncoding RNA orchestrate opposing regulatory and cell fate outcomes in yeast
Cited by: 10
Author(s): Fabien Moretto, N. Ezgi Wood, Minghao Chia, Cai Li, Nicholas M. Luscombe, Folkert J. van Werven
Software Mentions: 2
Published: over 5 years ago

10.1093/dnares/dsaa015

Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence
Cited by: 30
Author(s): Nadia Kamal, Terry Mun, Dugald Reid, JL Lin, Turgut Yiğit Akyol, Niels Sandal, Torben Asp, Hideki Hirakawa, Jens Stougaard, Klaus Mayer, Shusei Sato, Stig Uggerhøj Andersen
Software Mentions: 2
Published: about 6 years ago

10.1186/s13059-016-1054-5

Time-resolved dual RNA-seq reveals extensive rewiring of lung epithelial and pneumococcal transcriptomes during early infection
Cited by: 94
Author(s): Rieza Aprianto, Jelle Slager, Siger Holsappel, Jan‐Willem Veening
Software Mentions: 2
Published: almost 10 years ago

10.1074/jbc.RA118.006271

Leukodystrophy-associated POLR3A mutations down-regulate the RNA polymerase III transcript and important regulatory RNA BC200
Cited by: 36
Author(s): Karine Choquet, Diane Forget, Elisabeth Meloche, Marie‐Josée Dicaire, Geneviève Bernard, Adeline Vanderver, Raphael Schiffmann, Marc R. Fabian, Martin Teichmann, Benoit Coulombe, Bernard Brais, Claudia L. Kleinman
Software Mentions: 2
Published: about 7 years ago

10.1074/jbc.RA120.013206

An aberrantly sustained emergency granulopoiesis response accelerates postchemotherapy relapse in MLL1-rearranged acute myeloid leukemia in mice
Cited by: 2
Author(s): Hao Wang, Chirag Shah, Liping Hu, Weiqi Huang, Leonidas C. Platanias, Elizabeth A. Eklund
Software Mentions: 2
Published: about 6 years ago

10.3390/cancers11020181

Cord-Blood-Stem-Cell-Derived Conventional Dendritic Cells Specifically Originate from CD115-Expressing Precursors
Cited by: 10
Author(s): Maud Plantinga, Colin de Haar, Ester Dünnebach, Denise A. M. H. van den Beemt, Kitty W.M. Bloemenkamp, Michal Mokrý, Jaap Jan Boelens, Stefan Nierkens
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA120.015152

Genome editing demonstrates that the −5 kb Nanog enhancer regulates Nanog expression by modulating RNAPII initiation and/or recruitment
Cited by: 12
Author(s): Puja Agrawal, Steven Blinka, Kirthi Pulakanti, Michael Reimer, Cary Stelloh, Alison E. Meyer, Sridhar Rao
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100386

Two distinct trophectoderm lineage stem cells from human pluripotent stem cells
Cited by: 38
Author(s): Adam Mischler, Victoria Karakis, Jessica Mahinthakumar, Celeste K. Carberry, Adriana San-Miguel, Julia E. Rager, Rebecca C. Fry, Balaji M. Rao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41408-020-00362-7

FBXO11 is a candidate tumor suppressor in the leukemic transformation of myelodysplastic syndrome
Cited by: 11
Author(s): Michael Schieber, Christian Marinaccio, Lyndsey Bolanos, Wendy D. Haffey, Kenneth D. Greis, Daniel T. Starczynowski, John D. Crispino
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.014126

Glycosyltransferase ST6Gal-I promotes the epithelial to mesenchymal transition in pancreatic cancer cells
Cited by: 32
Author(s): Colleen M. Britain, Nikita Bhalerao, Austin D. Silva, Asmi Chakraborty, Donald J. Buchsbaum, Michael R. Crowley, David K. Crossman, Yvonne J. K. Edwards, Susan L. Bellis
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.014682

ABHD5 suppresses cancer cell anabolism through lipolysis-dependent activation of the AMPK/mTORC1 pathway
Cited by: 11
Author(s): Guohua Chen, Guoli Zhou, Aaron Lotvola, James G. Granneman, Jian Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41408-019-0194-8

CBFβ-MYH11 interferes with megakaryocyte differentiation via modulating a gene program that includes GATA2 and KLF1
Cited by: 7
Author(s): Guoqiang Yi, Amit Mandoli, Laura Jussen, Esther Tijchon, Maaike G.J.M. van Bergen, Gaëlle Cordonnier, Marten Hansen, Bowon Kim, Luan N. Nguyen, Pascal W.T.C. Jansen, Michiel Vermeulen, Bert van der Reijden, Emile van den Akker, Jonathan Bond, Joost H.A. Martens
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jbc.2021.100882

PRPF19 regulates p53-dependent cellular senescence by modulating alternative splicing of MDM4 mRNA
Cited by: 21
Author(s): Kimiyoshi Yano, Ryou‐u Takahashi, Bunsyo Shiotani, Junko Abe, Tomoki Shidooka, Yuki Sudo, Yusuke Yamamoto, Shisei Kan, Hiroki Sakagami, Hidetoshi Tahara
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers13123055

Dual Role of Integrin Alpha-6 in Glioblastoma: Supporting Stemness in Proneural Stem-Like Cells While Inducing Radioresistance in Mesenchymal Stem-Like Cells
Cited by: 7
Author(s): Elisabetta Stanzani, Leire Pedrosa, G Bourmeau, Océane Anezo, Aleix Noguera‐Castells, Anna Esteve‐Codina, Lorena Passoni, Michela Matteoli, Núria de la Iglesia, Giorgio Seano, Fina Martínez‐Soler, Avelina Tortosa
Software Mentions: 2
Published: about 5 years ago

10.1186/s13326-017-0160-y

Using semantics for representing experimental protocols
Cited by: 8
Author(s): Olga Giraldo, Alexander García, Federico López, Óscar Corcho
Software Mentions: 2
Published: over 8 years ago

10.3390/cancers13061475

Clinical Features and Multiplatform Molecular Analysis Assist in Understanding Patient Response to Anti-PD-1/PD-L1 in Renal Cell Carcinoma
Cited by: 10
Author(s): Eileen Shiuan, Anupama Reddy, Stephanie O. Dudzinski, Aaron R. Lim, Ayaka Sugiura, Rachel Hongo, Kirsten Young, Xian De Liu, Christof C. Smith, Jamye F. O’Neal, Kimberly B. Dahlman, Renee McAlister, Beiru Chen, Kristen Ruma, Nathan Roscoe, Jehovana Orozco Bender, Joolz Ward, Ju Young Kim, Christine Vaupel, Jennifer Bordeaux, Shridar Ganesan, Tina Mayer, Gregory Riedlinger, Benjamin G. Vincent, Nancy B. Davis, Scott M. Haake, Jeffrey C. Rathmell, Eric Jonasch, Brian I. Rini, W. Kimryn Rathmell, Kathryn E. Beckermann
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers12102784

Efficient Propagation of Circulating Tumor Cells: A First Step for Probing Tumor Metastasis
Cited by: 14
Author(s): Xiao Jian-yun, Joseph R. McGill, Kelly P. Stanton, Joshua D. Kassner, Sujata Maiti Choudhury, Richard Schlegel, Zuben E. Sauna, Paula R. Pohlmann, Seema Agarwal
Software Mentions: 2
Published: almost 6 years ago

10.7150/jca.40726

Transcriptomic analysis reveals the oncogenic role of S6K1 in hepatocellular carcinoma
Cited by: 8
Author(s): Keng Po Lai, Angela Cheung, Cheuk Hin Ho, Nathan Tam, Jing Woei Li, Xiao Lin, Ting‐Fung Chan, Nikki P. Lee, Rong Li
Software Mentions: 2
Published: over 6 years ago

10.3390/jcdd8040038

Early Postnatal Cardiac Stress Does Not Influence Ventricular Cardiomyocyte Cell-Cycle Withdrawal
Cited by: 2
Author(s): Marie Günthel, Karel van Duijvenboden, Jorn Jeremiasse, Maurice J.B. van den Hoff, Vincent M. Christoffels
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.14242

Therapeutic efficacy of anti‐MMP9 antibody in combination with nab‐paclitaxel‐based chemotherapy in pre‐clinical models of pancreatic cancer
Cited by: 20
Author(s): Niranjan Awasthi, Amanda Mikels‐Vigdal, Erin Stefanutti, Margaret A. Schwarz, Sheena Monahan, Victoria Smith, Roderich E. Schwarz
Software Mentions: 2
Published: over 7 years ago

10.3390/cancers13092037

Functional Genomic Analyses of the 21q22.3 Locus Identifying Functional Variants and Candidate Gene YBEY for Breast Cancer Risk
Cited by: 2
Author(s): Chris Shidal, Xiang Shu, Jie Wu, Jifeng Wang, Shuya Huang, Jirong Long, Joshua A. Bauer, Jie Ping, Xingyi Guo, Zheng Wang, Qiuyin Cai
Software Mentions: 2
Published: about 5 years ago

10.1111/jcmm.15745

Transcriptomic analysis identifies Toll‐like and Nod‐like pathways and necroptosis in pulmonary arterial hypertension
Cited by: 27
Author(s): Genfa Xiao, Wenxin Zhuang, Tingjun Wang, Guili Lian, Luo Lu, Chaoyi Ye, Huajun Wang, Liangdi Xie
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.16251

Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
Cited by: 14
Author(s): Lin Zhou, Yongchao Zhao, Fangjie Dai, Enyong Su, Fuhai Li, Yan Yan
Software Mentions: 2
Published: over 5 years ago

10.1128/JVI.02102-20

Segment-Specific Kinetics of mRNA, cRNA, and vRNA Accumulation during Influenza Virus Infection
Cited by: 21
Author(s): Thu T Phan, Elizabeth J. Fay, Zion Lee, Stephanie L. Aron, Wei Shou Hu, Ryan A. Langlois
Software Mentions: 2
Published: about 5 years ago

10.1186/s13068-020-01825-6

Evolutionary engineering of E. coli MG1655 for tolerance against isoprenol
Cited by: 12
Author(s): Heiko Babel, Jens O. Krömer
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13061472

Persistent Inflammatory Stimulation Drives the Conversion of MSCs to Inflammatory CAFs That Promote Pro-Metastatic Characteristics in Breast Cancer Cells
Cited by: 17
Author(s): Linor Rubinstein-Achiasaf, Dina Morein, Hagar Ben-Yaakov, Yulia Liubomirski, Tsipi Meshel, Eti Elbaz, Orly Dorot, Edward Pichinuk, Michael Gershovits, Miguel Weil, Adit Ben‐Baruch
Software Mentions: 2
Published: over 5 years ago

10.1128/JVI.00319-20

Loss of the Nuclear Protein RTF2 Enhances Influenza Virus Replication
Cited by: 3
Author(s): Bing Shao Chia, Bo Li, Ang Cui, Thomas Eisenhaure, Raktima Raychowdhury, David Lieb, Nir Hacohen
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.32833

Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish
Cited by: 33
Author(s): Almary Guerra, Raoul Freitas Vale Germano, Oliver A. Stone, Rima Arnaout, Stefan Guenther, Suchit Ahuja, Verónica Uribe, Benoît Vanhollebeke, Didier Y. R. Stainier, Sven Reischauer
Software Mentions: 2
Published: about 8 years ago

10.1242/jcs.258568

Genetic compensation for cilia defects in cep290 mutants by upregulation of cilia-associated small GTPases
Cited by: 13
Author(s): Magdalena Cárdenas-Rodríguez, Christina Austin‐Tse, Judith G.M. Bergboer, Elisa Molinari, Yuya Sugano, Ruxandra Bachmann‐Gagescu, John A. Sayer, Iain A. Drummond
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers11020190

Intratumoural Heterogeneity Underlies Distinct Therapy Responses and Treatment Resistance in Glioblastoma
Cited by: 36
Author(s): Seçkin Akgül, Ann‐Marie Patch, Rochelle C.J. D’Souza, Pamela Mukhopadhyay, Kátia Nones, Sarah Kempe, Stephen H. Kazakoff, Rosalind L. Jeffree, Brett W. Stringer, John V. Pearson, Nicola Waddell, Bryan W. Day
Software Mentions: 2
Published: over 7 years ago

10.1172/JCI94516

JAK2/IDH-mutant–driven myeloproliferative neoplasm is sensitive to combined targeted inhibition
Cited by: 67
Author(s): Anna Sophia McKenney, Allison N. Lau, Amritha Varshini Hanasoge Somasundara, Barbara Spitzer, Andrew M. Intlekofer, Jihae Ahn, Kaitlyn Shank, Franck Rapaport, Minal Patel, Efthymia Papalexi, Alan H. Shih, April Chiu, Elizaveta Freinkman, Esra A. Akbay, Mya Steadman, Raj Nagaraja, Katharine Yen, Julie Teruya‐Feldstein, Kwok Kin Wong, Raajit K. Rampal, Matthew G. Vander Heiden, Craig B. Thompson, Ross L. Levine
Software Mentions: 2
Published: over 8 years ago

10.3390/cancers11030402

Identification of Targetable Lesions in Anaplastic Thyroid Cancer by Genome Profiling
Cited by: 29
Author(s): Naveen Ravi, Minjun Yang, Sigurdur Gretarsson, Caroline Jansson, Nektaria Mylona, Saskia Sydow, Eleanor Luise Woodward, Lars Ekblad, Johan Wennerberg, Kajsa Paulsson
Software Mentions: 2
Published: over 7 years ago

10.3390/jcm8091420

Drosophila melanogaster Mutated in its GBA1b Ortholog Recapitulates Neuronopathic Gaucher Disease
Cited by: 17
Author(s): Or Cabasso, Surojit Paul, Orly Dorot, Gali Maor, Olga Krivoruk, Metsada Pasmanik‐Chor, Mina Mirzaian, Maria J. Ferraz, Johannes M. F. G. Aerts, Mia Horowitz
Software Mentions: 2
Published: almost 7 years ago

10.3390/jcm10010126

Fenofibrate Reduces the Severity of Neuroretinopathy in a Type 2 Model of Diabetes without Inducing Peroxisome Proliferator-Activated Receptor Alpha-Dependent Retinal Gene Expression
Cited by: 11
Author(s): Jennifer M. Enright, Sheng Zhang, Christina Thebeau, Emily Siebert, Alexander Jin, Veda Gadiraju, Xiaodong Zhang, Shiming Chen, Clay F. Semenkovich, Rithwick Rajagopal
Software Mentions: 2
Published: over 5 years ago

10.3390/jcm10143061

Altered Electrical, Biomolecular, and Immunologic Phenotypes in a Novel Patient-Derived Stem Cell Model of Desmoglein-2 Mutant ARVC
Cited by: 16
Author(s): Robert N. Hawthorne, Adriana Blazeski, Justin Lowenthal, Suraj Kannan, Roald Teuben, Deborah DiSilvestre, Justin Morrissette‐McAlmon, Jeffrey E. Saffitz, Kenneth R. Boheler, Cynthia A. James, Stephen P. Chelko, Gordon F. Tomaselli, Leslie Tung
Software Mentions: 2
Published: about 5 years ago

10.3390/jcm10184095

Biological Mechanism(s) Underpinning the Association between Antipsychotic Drugs and Weight Gain
Cited by: 8
Author(s): Bruna Panizzutti, Chiara C. Bortolasci, Briana Spolding, Srisaiyini Kidnapillai, Timothy Connor, Mark F. Richardson, Trang T. T. Truong, Zoe Liu, Laura J. Gray, Jee Hyun Kim, Olivia Dean, Michael Berk, Ken Walder
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers13092045

Targeting Cancer Stem Cells with Differentiation Agents as an Alternative to Genotoxic Chemotherapy for the Treatment of Malignant Testicular Germ Cell Tumors
Cited by: 5
Author(s): Amanda R. Loehr, Timothy M. Pierpont, Eric Gelsleichter, Anabella Maria D Galang, Irma Fernández, Elizabeth S. Moore, Matthew Z Guo, Andrew D. Miller, Robert S. Weiss
Software Mentions: 2
Published: about 5 years ago

10.1089/cmb.2016.0147

Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast
Cited by: 21
Author(s): Hao Wang, C. Joel McManus, Carl Kingsford
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.55523

A single-cell transcriptomic and anatomic atlas of mouse dorsal raphe Pet1 neurons
Cited by: 66
Author(s): Benjamin W. Okaty, Nikita Sturrock, Yasmin Escobedo Lozoya, YoonJeung Chang, Rebecca A. Senft, Krissy A Lyon, Olga V. Alekseyenko, Susan M. Dymecki
Software Mentions: 2
Published: about 6 years ago

10.3390/jdb8040034

Mud Loss Restricts Yki-Dependent Hyperplasia in Drosophila Epithelia
Cited by: 2
Author(s): Amalia S. Parra, Christopher A. Johnston
Software Mentions: 2
Published: over 5 years ago

10.1242/jeb.226233

High temperature induces transcriptomic changes in Crassostrea gigas that hinders progress of Ostreid herpesvirus (OsHV-1) and promotes survival
Cited by: 18
Author(s): Lizenn Delisle, Marianna Pauletto, Jérémie Vidal-Dupiol, Bruno Petton, Luca Bargelloni, Caroline Montagnani, Fabrice Pernet, Charlotte Corporeau, Elodie Fleury
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers11020208

ORAI1 and ORAI3 in Breast Cancer Molecular Subtypes and the Identification of ORAI3 as a Hypoxia Sensitive Gene and a Regulator of Hypoxia Responses
Cited by: 42
Author(s): Iman Azimi, Michael J. G. Milevskiy, Silke B. Chalmers, Kunsala T. D. S. Yapa, Mélanie Robitaille, Christopher Henry, Gregory J. Baillie, Erik W. Thompson, Sarah J. Roberts‐Thomson, Gregory R. Monteith
Software Mentions: 2
Published: over 7 years ago

10.1093/jxb/eraa064

Successful field performance in warm and dry environments of soybean expressing the sunflower transcription factor HB4
Cited by: 31
Author(s): Karina Fabiana Ribichich, Mariana Chiozza, Selva Ávalos-Britez, Julieta Virginia Cabello, Agustín Lucas Arce, Gerónimo Watson, Carlos Arias, Margarita Portapila, Federico Trucco, Marı́a Elena Otegui, Raquel L. Chan
Software Mentions: 2
Published: over 6 years ago

10.1093/jxb/eraa469

A new genome allows the identification of genes associated with natural variation in aluminium tolerance in Brachiaria grasses
Cited by: 18
Author(s): Margaret Worthington, Juan Guillermo Pérez, Saule Mussurova, Alexander Silva-Cordoba, Valheria Castiblanco, Juan Andrés Cardoso Arango, Cerys Jones, Narcís Fernández-Fuentes, Leif Skøt, Sarah Dyer, Joe Tohmé, Federica Di Palma, Jacobo Arango, Ian Armstead, Jose J De Vega
Software Mentions: 2
Published: almost 6 years ago

10.1093/jxb/erab065

Golgi-localized membrane protein AtTMN1/EMP12 functions in the deposition of rhamnogalacturonan II and I for cell growth in Arabidopsis
Cited by: 6
Author(s): Akihiko Hiroguchi, Shingo Sakamoto, Nobutaka Mitsuda, Kyoko Miwa
Software Mentions: 2
Published: over 5 years ago

10.3390/nu11092172

A Low Iron Diet Protects from Steatohepatitis in a Mouse Model
Cited by: 6
Author(s): Lipika Salaye, Ielizaveta Bychkova, Sandy Sink, Alexander J. Kovalic, Manish S. Bharadwaj, Felipe Lorenzo, Shalini Jain, Alexandria Harrison, Ashley Davis, Katherine Turnbull, Nuwan T. Meegalla, Soh-Hyun Lee, Robert C. Cooksey, George L. Donati, Kylie Kavanagh, Herbert L. Bonkovsky, Donald A. McClain
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1004250

Infection with MERS-CoV Causes Lethal Pneumonia in the Common Marmoset
Cited by: 185
Author(s): Darryl Falzarano, Emmie de Wit, Friederike Feldmann, Angela L. Rasmussen, Atsushi Okumura, Xinxia Peng, Matthew Thomas, Neeltje van Doremalen, Elaine Haddock, Lee Nagy, Rachel LaCasse, Tingting Liu, Jiang Zhu, Jason S. McLellan, Dana Scott, Michael G. Katze, Heinz Feldmann, Vincent J. Munster
Software Mentions: 2
Published: almost 12 years ago

10.3390/cancers12061603

A Novel JAK1 Mutant Breast Implant-Associated Anaplastic Large Cell Lymphoma Patient-Derived Xenograft Fostering Pre-Clinical Discoveries
Cited by: 11
Author(s): Danilo Fiore, Luca Vincenzo Cappelli, Paul Zumbo, Jude M. Phillip, Zhaoqi Liu, Shuhua Cheng, Liron Yoffe, Paola Ghione, Federica Maggio, Ahmet Doğan, Inna Khodos, Elisa de Stanchina, Joseph Casano, Clarisse Kayembe, Wayne Tam, Doron Betel, Robin Foà, Leandro Cerchietti, Raúl Rabadán, Steven M. Horwitz, David M. Weinstock, Giorgio Inghirami
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1006046

Macrophage Colony Stimulating Factor Derived from CD4+ T Cells Contributes to Control of a Blood-Borne Infection
Cited by: 25
Author(s): Mary F. Fontana, Gabrielly Lunkes de Melo, Chioma Anidi, Rebecca Hamburger, Charles C. Kim, So Youn Lee, Jennifer Pham
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1006397

Ebola virus glycoprotein directly triggers T lymphocyte death despite of the lack of infection
Cited by: 52
Author(s): Mathieu Iampietro, Patrick Younan, Andrew Nishida, Mukta Dutta, Ndongala Michel Lubaki, Rodrigo I. Santos, Richard A. Koup, Michael G. Katze, Alexander Bukreyev
Software Mentions: 2
Published: about 9 years ago

10.3390/cancers13051067

Dive into Single, Seek Out Multiple: Probing Cancer Metastases via Single-Cell Sequencing and Imaging Techniques
Cited by: 3
Author(s): Shang Su, Xiaohong Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1006806

A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function
Cited by: 10
Author(s): Avantika S. Chitre, Michael G. Kattah, Yenny Y. Rosli, Montha Pao, Monika Deswal, Steven G. Deeks, Peter W. Hunt, Mohamed Abdel‐Mohsen, Luis J. Montaner, Charles C. Kim, Averil Ma, Ma Somsouk, Joseph M. McCune
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1007057

Plasmodium parasite exploits host aquaporin-3 during liver stage malaria infection
Cited by: 47
Author(s): Dora Posfai, Kayla Sylvester, Anupama Reddy, Jack G. Ganley, Johannes Wirth, Quinlan E. Cullen, Tushar Dave, Nobutaka Kato, Sandeep S. Davé, Emily R. Derbyshire
Software Mentions: 2
Published: about 8 years ago

10.1042/BSR20201590

Profiling and bioinformatics analyses reveal differential circular RNA expression in NK/T-cell lymphoma-associated hemophagocytic syndrome
Cited by: 0
Author(s): Changfeng Man, Yu Fan, Guangli Yin, Jiayu Huang, Jujuan Wang, Hai-Rong Qiu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0246615

Deciphering the transcriptomic regulation of heat stress responses in Nothofagus pumilio
Cited by: 4
Author(s): Maximiliano Estravis-Barcalá, Katrin Heer, Paula Marchelli, Birgit Ziegenhagen, María Verónica Arana, Nicolás Bellora
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1007114

CAGE-seq analysis of Epstein-Barr virus lytic gene transcription: 3 kinetic classes from 2 mechanisms
Cited by: 33
Author(s): Reza Djavadian, Mitchell Hayes, Eric Johannsen
Software Mentions: 2
Published: about 8 years ago

10.1042/BSR20210691

Histone H3K4me1 strongly activates the DNase I hypersensitive sites in super-enhancers than those in typical enhancers
Cited by: 2
Author(s): Young-Seok Kang, Jin Gu Kang, AeRi Kim
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1007365

CD4 T cells control development and maintenance of brain-resident CD8 T cells during polyomavirus infection
Cited by: 26
Author(s): Taryn E Mockus, .. Shwetank, Matthew D Lauver, Heather M. Ren, Colleen S. Netherby, T. Salameh, Yuka Imamura, Feng Yun Yue, James R. Broach, Aron E. Lukacher
Software Mentions: 2
Published: over 7 years ago

Projects: cran: STAR

Science Score: 100/100

Bonuses:

Papers Mentioning STAR 5,759