Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: SPOT
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SPOT
Sequential Parameter Optimization Toolbox
31 versions
Latest release: over 2 years ago
4 dependent packages
616 downloads last month
Papers Mentioning SPOT 551
10.1186/1471-2202-10-128
Chondroitin sulfate proteoglycans regulate the growth, differentiation and migration of multipotent neural precursor cells through the integrin signaling pathwayCited by: 71
Author(s): Wen Li Gu, Sai-Li Fu, Yan Xia Wang, Ying Liu, He Zuo Lü, Xiao–Ming Xu, Pei-Hua Lu
Software Mentions: 1
Published: about 15 years ago
10.1186/s12870-015-0670-7
A small multigene hydroxyproline-O-galactosyltransferase family functions in arabinogalactan-protein glycosylation, growth and development in ArabidopsisCited by: 63
Author(s): Debarati Basu, Lü Tian, Wuda Wang, Shauni Bobbs, Hayley Herock, Andrew Travers, Allan M. Showalter
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2229-5-7
Light-induced morphological alteration in anthocyanin-accumulating vacuoles of maize cellsCited by: 62
Author(s): Niloufer G. Irani, Erich Grotewold
Software Mentions: 1
Published: over 19 years ago
10.1186/s13104-015-1206-9
Inactivation of Escherichia coli O157:H7 and Listeria monocytogenes in biofilms by pulsed ultraviolet lightCited by: 23
Author(s): Nedra Louisa Montgomery, Pratik Banerjee
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2482-5-1
Resorbable screws versus pins for optimal transplant fixation (SPOT) in anterior cruciate ligament replacement with autologous hamstring grafts: rationale and design of a randomized, controlled, patient and investigator blinded trial [ISRCTN17384369]Cited by: 12
Author(s): Dirk Stengel, G. Matthes, Julia Seifert, Volker Tober, Sven Mutze, G. Rademacher, Axel Ekkernkamp, Kai Bauwens, M. Wich, D. Casper
Software Mentions: 1
Published: over 19 years ago
10.1186/s12993-015-0075-7
Thrombin-induced microglial activation impairs hippocampal neurogenesis and spatial memory ability in miceCited by: 39
Author(s): Yuan Yang, Meikui Zhang, Xiaoni Kang, Jiang Chen, Huan Zhang, Pei Wang, Jingjing Li
Software Mentions: 1
Published: about 9 years ago
10.1242/bio.014415
Thyroid bud morphogenesis requires CDC42- and SHROOM3-dependent apical constrictionCited by: 8
Author(s): David A.F. Loebel, Timothy F. Plageman, Theresa L. Tang, Vanessa Jones, Maria Muccioli, Patrick Tam
Software Mentions: 1
Published: almost 9 years ago
10.1186/s40659-018-0161-z
In vitro chemokine (C-C motif) receptor 6-dependent non-inflammatory chemotaxis during spermatogenesisCited by: 7
Author(s): Ruiying Diao, Xueyong Cai, Lu Liu, Liang Yang, Yong‐Gang Duan, Zhiming Cai, Yaoting Gui, Lisha Mou
Software Mentions: 1
Published: over 6 years ago
10.1155/2015/843743
Tyrosine 705 Phosphorylation of STAT3 Is Associated with Phenotype Severity in TGF<i>β</i>1 Transgenic MiceCited by: 11
Author(s): Eleonora Guadagnin, Jigna Narola, Carsten G. Bönnemann, Yiwen Chen
Software Mentions: 1
Published: almost 10 years ago
10.1155/2015/459393
Effects of rhBMP-2 on Sandblasted and Acid Etched Titanium Implant Surfaces on Bone Regeneration and Osseointegration: Spilt-Mouth Designed Pilot StudyCited by: 13
Author(s): Nam Ho Kim, So Hyoun Lee, Jae Jun Ryu, Kyung Hee Choi, Jung-Bo Huh
Software Mentions: 1
Published: almost 10 years ago
10.1155/2014/817613
Accumulation of Extracellular Hyaluronan by Hyaluronan Synthase 3 Promotes Tumor Growth and Modulates the Pancreatic Cancer MicroenvironmentCited by: 95
Author(s): Anne Kultti, Chun‐Mei Zhao, Netai C. Singha, Susan Zimmerman, Ryan J. Osgood, Rebecca Symons, Ping Jiang, Xiaoming Li, Curtis B. Thompson, Jeffrey R. Infante, Michael A. Jacobetz, David A. Tuveson, Gregory I. Frost, H. Michael Shepard, Zhongdong Huang
Software Mentions: 1
Published: almost 11 years ago
10.1155/2014/182657
Research of Electrosurgical Ablation with Antiadhesive Functionalization on Thermal and Histopathological Effects of Brain Tissues In VivoCited by: 2
Author(s): Wen Tien Hsiao, Chun Ming Kung, Jan Show Chu, Keng Liang Ou, Pai Peng
Software Mentions: 1
Published: almost 11 years ago
10.1155/2014/940860
Immobilization of Murine Anti-BMP-2 Monoclonal Antibody on Various Biomaterials for Bone Tissue EngineeringCited by: 14
Author(s): Sahar Ansari, Marcelo Freire, Eun-Kyoung Pang, Alaa Abdelhamid, Mohammad Almohaimeed, Homayoun H. Zadeh
Software Mentions: 1
Published: almost 11 years ago
10.1155/2013/914764
Mechanical Strength and Biocompatibility of Ultrafine-Grained Commercial Purity TitaniumCited by: 38
Author(s): Yuri Estrin, Hyoun‐Ee Kim, Rimma Lapovok, Hoi-Pang Ng, Jihoon Jo
Software Mentions: 1
Published: almost 12 years ago
10.3390/biomedicines8110518
ACTN4 Mediates SEPT14 Mutation-Induced Sperm Head DefectsCited by: 7
Author(s): Yu-Hua Lin, Chia-Yen Huang, Chih-Chun Ke, Yayun Wang, Tsung‐Ching Lai, Hsuan-Che Liu, Wei-Chi Ku, Chying‐Chyuan Chan, Ying-Hung Lin
Software Mentions: 1
Published: almost 4 years ago
10.3390/biomedicines9091187
Fumagillin Attenuates Spinal Angiogenesis, Neuroinflammation, and Pain in Neuropathic Rats after Chronic Constriction InjuryCited by: 9
Author(s): Zhi‐Hong Wen, Sheng-Lung Huang, Hsi-Kung Kuo, Chao-Ting Chen, Nan‐Fu Chen, Wu-Fu Chen, Kuan‐Hao Tsui, Hsin-Tzu Liu, Chun-Sung Sung
Software Mentions: 1
Published: about 3 years ago
10.3390/biom10091264
Histidine Residues Are Responsible for Bidirectional Effects of Zinc on Acid-Sensing Ion Channel 1a/3 Heteromeric ChannelsCited by: 6
Author(s): Qian Jiang, Andrew M. Peterson, Yuyang Chu, Xiaolan Yao, Xiang-ming Zha, Xiang‐Ping Chu
Software Mentions: 1
Published: about 4 years ago
10.1093/biosci/biaa048
Conceptual Links between Landscape Diversity and Diet Diversity: A Roadmap for Transdisciplinary ResearchCited by: 25
Author(s): Sarah E. Gergel, Bronwen Powell, Frédéric Baudron, Stephen C. Wood, Jeanine M. Rhemtulla, Gina Kennedy, Laura Vang Rasmussen, Amy Ickowitz, Matthew E. Fagan, Erica A. H. Smithwick, Jessica Ranieri, Stephen A. Wood, J.C.J. Groot, Terry Sunderland
Software Mentions: 1
Published: over 4 years ago
10.3390/bios11060165
Development of a Smartphone-Based Optical Device to Measure Hemoglobin Concentration Changes for Remote Monitoring of WoundsCited by: 8
Author(s): Kacie Kaile, Christian Fernandéz, Anuradha Godavarty
Software Mentions: 1
Published: over 3 years ago
10.1038/s41413-020-00116-y
Growth differentiation factor 6, a repressive target of EZH2, promotes the commitment of human embryonic stem cells to mesenchymal stem cellsCited by: 5
Author(s): Pend Deng, Yongxin Yu, Christine Hong, Cun‐Yu Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/bcr3102
Metastasis is an early event in mouse mammary carcinomas and is associated with cells bearing stem cell markersCited by: 56
Author(s): Desheng Weng, Jeffrey H Penzner, Baizheng Song, Shigeo Koido, Stuart K. Calderwood, Jianlin Gong
Software Mentions: 1
Published: almost 13 years ago
10.1186/s13058-020-01309-3
Patient treatment and outcome after breast cancer orbital and periorbital metastases: a comprehensive case series including analysis of lobular versus ductal tumor histologyCited by: 13
Author(s): Martin Blohmer, Li Zhu, Jennifer M. Atkinson, Sushil Beriwal, Joshua L. Rodríguez‐López, Margaret Rosenzweig, Adam Brufsky, George C. Tseng, Peter C. Lucas, Adrian V. Lee, Steffi Oesterreich, Rachel C. Jankowitz
Software Mentions: 1
Published: over 4 years ago
10.1186/bcr2639
Radiosensitization of mammary carcinoma cells by telomere homolog oligonucleotide pretreatmentCited by: 13
Author(s): Desheng Weng, Monique C Cunin, Baizheng Song, Brendan D. Price, Mark S. Eller, Barbara A. Gilchrest, Stuart K. Calderwood, Jianlin Gong
Software Mentions: 1
Published: about 14 years ago
10.1186/1475-2867-5-8
Cited by: 66Author(s): Qingqing Yang, Kar‐Ming Fung, W. Andrew Day, Bradley P. Kropp, Hsueh Kung Lin
Software Mentions: 1
Published: almost 20 years ago
10.1002/cam4.345
Inhibition of EGFR or IGF ‐1R signaling enhances radiation response in head and neck cancer models but concurrent inhibition has no added benefitCited by: 8
Author(s): Uma Raju, David P. Molkentine, David R. Valdecanas, Amit Deorukhkar, Kathryn A. Mason, Thomas A. Buchholz, Raymond E. Meyn, K. Kian Ang, Heath D. Skinner
Software Mentions: 1
Published: about 10 years ago
10.1002/cam4.1635
A new niclosamide derivatives-B17 can inhibit urological cancers growth through apoptosis-related pathwayCited by: 4
Author(s): Ching-Tang Wu, Chun-Liang Chen, Hsu-Shan Huang, Dah‐Shyong Yü
Software Mentions: 1
Published: over 6 years ago
10.1038/s41375-018-0368-6
Sequentially inducible mouse models reveal that Npm1 mutation causes malignant transformation of Dnmt3a-mutant clonal hematopoiesisCited by: 67
Author(s): Matthew A. Loberg, Rebecca Bell, Leslie O. Goodwin, Elizabeth Eudy, Linde A. Miles, Jennifer M. SanMiguel, Kira Young, David E. Bergstrom, Ross L. Levine, Rebekka K. Schneider, Jennifer J. Trowbridge
Software Mentions: 1
Published: almost 6 years ago
10.3390/ma10121347
Enhancement of Osteoblastic-Like Cell Activity by Glow Discharge Plasma Surface Modified Hydroxyapatite/β-Tricalcium Phosphate Bone SubstituteCited by: 14
Author(s): Eisner Salamanca, Yu Pan, Aileen I. Tsai, Pei Lin, Ching Kai Lin, Haw Ming Huang, Nai Chia Teng, Peter D. Wang, Wei Jen Chang
Software Mentions: 1
Published: almost 7 years ago
10.3390/ma12132078
The Effect of Ultraviolet Photofunctionalization on a Titanium Dental Implant with Machined Surface: An In Vitro and In Vivo StudyCited by: 27
Author(s): Junbeom Lee, Ye-Hyeon Jo, Jung-Yoo Choi, Yang‐Jo Seol, Yong-Moo Lee, Young Ku, In‐Chul Rhyu, I. Yeo
Software Mentions: 1
Published: over 5 years ago
10.3390/ma4101805
Fabrication of κ-Carrageenan Fibers by Wet Spinning: Spinning ParametersCited by: 17
Author(s): Lingyan Kong, Gregory R. Ziegler
Software Mentions: 1
Published: about 13 years ago
10.3390/ma12203400
A Vitronectin-Derived Bioactive Peptide Improves Bone Healing Capacity of SLA Titanium SurfacesCited by: 15
Author(s): Chang-Bin Cho, Sung Youn Jung, Cho Yeon Park, Hyun Kang, I. Yeo, Byung‐Moo Min
Software Mentions: 1
Published: about 5 years ago
10.3390/ma10091049
Evaluation of the Healing Potential of Demineralized Dentin Matrix Fixed with Recombinant Human Bone Morphogenetic Protein-2 in Bone GraftsCited by: 43
Author(s): Sang-Yun Kim, Young-Kyun Kim, Yeoung-Hyun Park, Joo-Cheol Park, Jeong-Kui Ku, In-Woong Um, Jiyun Kim
Software Mentions: 1
Published: about 7 years ago
10.3390/ma11050714
Histological Evaluation of the Healing Process of Various Bone Graft Materials after Engraftment into the Human BodyCited by: 19
Author(s): Sang Hyun Jo, Young Kyun Kim, Yong-Hoon Choi
Software Mentions: 1
Published: over 6 years ago
10.3390/ma8052523
A Novel Porcine Graft for Regeneration of Bone DefectsCited by: 12
Author(s): Eisner Salamanca, Wei Fang Lee, Chin Yi Lin, Haw Ming Huang, Che Tong Lin, Sheng-Wei Feng, Wei Jen Chang
Software Mentions: 1
Published: over 9 years ago
10.3390/ma14164405
Bone Response to Conventional Titanium Implants and New Zirconia Implants Produced by Additive ManufacturingCited by: 6
Author(s): Jin-Cheol Kim, In‐Sung Yeo
Software Mentions: 1
Published: over 3 years ago
10.1186/s40902-019-0234-0
Effect of bFGF and fibroblasts combined with hyaluronic acid-based hydrogels on soft tissue augmentation: an experimental study in ratsCited by: 5
Author(s): Su Yeon Lee, Yongdoo Park, Soon Jung Hwang
Software Mentions: 1
Published: about 5 years ago
10.1186/s40902-020-00280-5
Influence of biodegradable polymer membrane on new bone formation and biodegradation of biphasic bone substitutes: an animal mandibular defect model studyCited by: 8
Author(s): Jeong-Kui Ku, Young-Kyun Kim, Pil‐Young Yun
Software Mentions: 1
Published: about 4 years ago
10.1186/s40902-019-0231-3
Improvement of biohistological response of facial implant materials by tantalum surface treatmentCited by: 3
Author(s): Mohammed Mousa H. Bakri, Sung Ho Lee, Jong Ho Lee
Software Mentions: 1
Published: almost 5 years ago
10.1155/2020/5919150
Enhanced Wound Healing- and Inflammasome-Associated Gene Expression in TNFAIP3-Interacting Protein 1- (TNIP1-) Deficient HaCaT Keratinocytes Parallels Reduced ReepithelializationCited by: 7
Author(s): Rambon Shamilov, Tyler W Ackley, Brian J. Aneskievich
Software Mentions: 1
Published: over 4 years ago
10.1016/j.mex.2021.101462
Concurrent sampling of transitional and coastal waters by Diffusive Gradient in Thin-films (DGT) and spot sampling for trace metals analysisCited by: 7
Author(s): Philippe Bersuder, Isabelle Amouroux, María Jesús Belzunce-Segarra, Thi Bolam, Miguel Caetano, Inês Carvalho, Margarida M. Correia dos Santos, Gary R. Fones, Jean-Louis Gonzalez, Stephane Guesdon, Joana Larreta, Barbara Marras, Brendan McHugh, Florence Menet-Nédélec, Iratxe Menchaca, Vanessa Millán Gabet, Natalia Montero, Martin Nolan, Fiona Regan, Craig D. Robinson, Nuno Rosa, Marta Rodrigo Sanz, José Germán Rodríguez, Marco Schintu, Blánaid White, Hao Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3390/microarrays4030370
SPOTing Acetyl-Lysine Dependent InteractionsCited by: 12
Author(s): S. Picaud, P. Filippakopoulos
Software Mentions: 1
Published: about 9 years ago
10.1111/1751-7915.13407
<i>Lactobacillus casei</i> expressing Internalins A and B reduces <i>Listeria monocytogenes</i> interaction with Caco‐2 cells <i>in vitro</i>Cited by: 13
Author(s): Moloko Gloria Mathipa, Mapitsi Silvester Thantsha, Arun K. Bhunia
Software Mentions: 1
Published: over 5 years ago
10.3390/mi10030180
Development and Validation of a Smartphone-Based Near-Infrared Optical Imaging Device to Measure Physiological Changes In-VivoCited by: 12
Author(s): Kacie Kaile, Anuradha Godavarty
Software Mentions: 1
Published: over 5 years ago
10.1038/s41378-021-00287-6
Leakage pressures for gasketless superhydrophobic fluid interconnects for modular lab-on-a-chip systemsCited by: 3
Author(s): Christopher Brown, Xiaoxiao Zhao, Taehyun Park, Pin-Chuan Chen, Byoung Hee You, Daniel Park, Steven A. Soper, Alison E. Baird, Michael C. Murphy
Software Mentions: 1
Published: about 3 years ago
10.1038/micronano.2017.15
A 3D-printed platform for modular neuromuscular motor unitsCited by: 55
Author(s): Caroline Cvetkovic, Max H. Rich, Ritu Raman, Hyunjoon Kong, Rashid Bashir
Software Mentions: 1
Published: over 7 years ago
10.1186/s13100-019-0146-7
Features of a novel protein, rusticalin, from the ascidian Styela rustica reveal ancestral horizontal gene transfer eventCited by: 2
Author(s): M. A. Daugavet, Sergey Shabelnikov, A. N. Shumeev, Tatiana Shaposhnikova, Leonid S. Adonin, O. I. Podgornaya
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13041-016-0268-5
PERK regulates Gq protein-coupled intracellular Ca2+ dynamics in primary cortical neuronsCited by: 15
Author(s): Siying Zhu, Barbara C. McGrath, Y. Bai, Xin Tang, Douglas R. Cavener
Software Mentions: 1
Published: about 8 years ago
10.1186/1476-4598-10-24
Differential contributory roles of nucleotide excision and homologous recombination repair for enhancing cisplatin sensitivity in human ovarian cancer cellsCited by: 52
Author(s): Qi-En Wang, Keisha Milum, Chunhua Han, Yi‐Wen Huang, Gulzar Wani, Jürgen Thomale, Altaf A. Wani
Software Mentions: 1
Published: almost 14 years ago
10.1186/1476-4598-10-69
A chalcone-related small molecule that induces methuosis, a novel form of non-apoptotic cell death, in glioblastoma cellsCited by: 128
Author(s): Jean H. Overmeyer, Ashley Young, Haymanti Bhanot, William A. Maltese
Software Mentions: 1
Published: over 13 years ago
10.1186/1476-4598-11-20
Inhibition of HSP27 alone or in combination with pAKT inhibition as therapeutic approaches to target SPARC-induced glioma cell survivalCited by: 35
Author(s): Chad R. Schultz, William Golembieski, Dan King, Stephen L. Brown, Chaya Brodie, Sandra A. Rempel
Software Mentions: 1
Published: over 12 years ago