cran: SPARQL | Projects | Ecosyste.ms: Papers

10.1186/s13040-017-0123-y

Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support
Cited by: 14
Author(s): Hossein Mohammadhassanzadeh, William Van Woensel, Samina Raza Abidi, Syed Sibte Raza Abidi
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13040-016-0118-0

The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature
Cited by: 8
Author(s): Arzucan Özgür, Junguk Hur, Yongqun He
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13040-015-0044-6

Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study
Cited by: 13
Author(s): Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute
Software Mentions: 1
Published: over 9 years ago

10.3897/BDJ.3.e5464

A Preliminary Investigation of Reversing RML: From an RDF dataset to its Column-Based data source
Cited by: 2
Author(s): Carlo Allocca, Alexandros Gougousis
Software Mentions: 1
Published: over 9 years ago

10.3897/BDJ.4.e8443

LifeWatch Greece data-services: Discovering Biodiversity Data using Semantic Web Technologies
Cited by: 0
Author(s): Nikos Minadakis, Yannis Marketakis, Martin Doerr, Chryssoula Bekiari, Panagiotis Papadakos, Alexandros Gougousis, Nicolas Bailly, Christos Arvanitidis
Software Mentions: 1
Published: about 8 years ago

10.1093/bioinformatics/btz817

Enzyme annotation in UniProtKB using Rhea
Cited by: 51
Author(s): Anne Morgat, Thierry Lombardot, Elisabeth Coudert, Kristian Axelsen, Teresa Batista Neto, Sébastien Géhant, Parit Bansal, Jerven Bolleman, Elisabeth Gasteiger, Edouard de Castro, Delphine Baratin, Monica Pozzato, Ioannis Xénarios, Sylvain Poux, Nicole Redaschi, Alan Bridge
Software Mentions: 1
Published: about 5 years ago

10.1093/bioinformatics/btv064

SPARQL-enabled identifier conversion with Identifiers.org
Cited by: 13
Author(s): Sarala M. Wimalaratne, Jerven Bolleman, Nick Juty, Toshiaki Katayama, Michel Dumontier, Nicole Redaschi, Nicolas Le Novère, Henning Hermjakob, Camille Laibe
Software Mentions: 1
Published: almost 10 years ago

10.1093/bioinformatics/btaa238

GlyGen data model and processing workflow
Cited by: 20
Author(s): Robel Kahsay, Jeet Vora, Rahi Navelkar, Reza Mousavi, Brian C. Fochtman, Xavier Holmes, Nagarajan Pattabiraman, René Ranzinger, Rupali Mahadik, Tatiana Williamson, Sujeet Kulkarni, Gaurav Agarwal, Maria Jesus Martin, Preethi Vasudev, Leyla García, Nathan Edwards, Wenjin Zhang, Darren A. Natale, Karen Ross, Kiyoko F. Aoki‐Kinoshita, Matthew P. Campbell, William S. York, Raja Mazumder
Software Mentions: 1
Published: over 4 years ago

10.1093/bioinformatics/btz835

The Cytoscape BioGateway App: explorative network building from an RDF store
Cited by: 9
Author(s): Stian Holmås, Rafael Riudavets Puig, Márcio Luís Acencio, Vladimir Mironov, Martin Kuiper
Software Mentions: 1
Published: about 5 years ago

10.1093/bioinformatics/btt539

Pattern search in BioPAX models
Cited by: 25
Author(s): Özgün Babur, Bülent Arman Aksoy, Igor Rodchenkov, S. Onur Sumer, Chris Sander, Emek Demir
Software Mentions: 1
Published: about 11 years ago

10.1155/2015/976272

Postmarketing Safety Study Tool: A Web Based, Dynamic, and Interoperable System for Postmarketing Drug Surveillance Studies
Cited by: 3
Author(s): Ali Anıl Sınacı, Gökçe Banu Laleci Ertürkmen, Suat Gönül, Mustafa Yuksel, Paolo Invernizzi, Bharat Thakrar, Anil Pacaci, Hayri Çınar, Nihan Kesim Çiçekli
Software Mentions: 1
Published: almost 10 years ago

10.1155/2017/2858423

Semantic Health Knowledge Graph: Semantic Integration of Heterogeneous Medical Knowledge and Services
Cited by: 62
Author(s): Longxiang Shi, Shijian Li, Xiaoran Yang, Jiaheng Qi, Gang Pan, Binbin Zhou
Software Mentions: 1
Published: almost 8 years ago

10.1155/2017/8327980

Linked Registries: Connecting Rare Diseases Patient Registries through a Semantic Web Layer
Cited by: 25
Author(s): Pedro Sernadela, Lorena González-Castro, Claudio Carta, Eelke van der Horst, Pedro Lopes, Rajaram Kaliyaperumal, Mark Thompson, Rachel Thompson, Núria Queralt-Rosiñach, Estrella Montes López, Libby Wood, Agata Robertson, Claudia Lamanna, Mette Gilling, Michael Orth, Roxana Merino-Martinez, Manuel Posada de la Paz, Domenica Taruscio, Hanns Lochmüller, Peter N. Robinson, Marco Roos, José Luís Oliveira
Software Mentions: 1
Published: almost 8 years ago

10.1038/bjc.2015.341

Big Data: the challenge for small research groups in the era of cancer genomics
Cited by: 44
Author(s): Aisyah Mohd Noor, Lars Holmberg, Cheryl Gillett, Anita Grigoriadis
Software Mentions: 1
Published: about 9 years ago

10.1093/bib/bbab049

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks
Cited by: 4
Author(s): Adrien Rougny, Vasundra Touré, John S. Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein
Software Mentions: 1
Published: over 3 years ago

10.1007/978-3-030-66981-2_11

Exploring the Predictive Power of News and Neural Machine Learning Models for Economic Forecasting
Cited by: 2
Author(s): Luca Barbaglia, Sergio Consoli, Sebastiano Manzan
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.mcpro.2021.100062

Reflections on the HUPO Human Proteome Project, the Flagship Project of the Human Proteome Organization, at 10 Years
Cited by: 19
Author(s): Gilbert S. Omenn
Software Mentions: 1
Published: almost 4 years ago

10.1002/wcms.1127

Cheminformatics and the Semantic Web: adding value with linked data and enhanced provenance
Cited by: 19
Author(s): Jeremy G. Frey, Colin Bird
Software Mentions: 1
Published: almost 12 years ago

10.7717/peerj.2331

The health care and life sciences community profile for dataset descriptions
Cited by: 17
Author(s): Michel Dumontier, Alasdair J. G. Gray, M. Scott Marshall, Vladimir Alexiev, Peter Ansell, Gary D. Bader, Joachim Baran, Jerven Bolleman, Alison Callahan, José Cruz-Toledo, Pascale Gaudet, Erich Gombocz, Alejandra N. González-Beltrán, Paul Groth, Melissa Haendel, Maori Ito, Simon Jupp, Nick Juty, Toshiaki Katayama, Norio Kobayashi, Kalpana Krishnaswami, Camille Laibe, Nicolas Le Novère, Simon Lin, James Malone, Michael Miller, Christopher J. Mungall, Laurens Rietveld, Sarala M. Wimalaratne, Atsuko Yamaguchi
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.524

Fast and accurate semantic annotation of bioassays exploiting a hybrid of machine learning and user confirmation
Cited by: 17
Author(s): Alex M. Clark, Barry A. Bunin, Nadia K. Litterman, Stephan C. Schürer, Ubbo Visser
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.4201

Biotea: semantics for Pubmed Central
Cited by: 5
Author(s): Alexander García, Federico López, Leyla García, Olga Giraldo, Víctor Bucheli, Michel Dumontier
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.10216

DNMSO; an ontology for representing de novo sequencing results from Tandem-MS data
Cited by: 1
Author(s): Savaş Takan, Jens Allmer
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.8580

DISNET: a framework for extracting phenotypic disease information from public sources
Cited by: 25
Author(s): Gerardo Lagunes García, Alejandro Rodríguez‐González, Lucía Prieto Santamaría, Eduardo P. García del Valle, Massimiliano Zanin, Alejandro Rodríguez-González
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.5579

Plant data visualisation using network graphs
Cited by: 1
Author(s): Afrina Adlyna Mohamad-Matrol, Siow-Wee Chang, Arpah Abu
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj-cs.445

LOPDF: a framework for extracting and producing open data of scientific documents for smart digital libraries
Cited by: 2
Author(s): Muhammad Ahtisham Aslam
Software Mentions: 1
Published: over 3 years ago

10.1111/pbi.13583

KnetMiner: a comprehensive approach for supporting evidence‐based gene discovery and complex trait analysis across species
Cited by: 36
Author(s): Keywan Hassani‐Pak, Ajit Singh, Marco Brandizi, Joseph Hearnshaw, Jeremy Parsons, Sandeep Amberkar, Andrew L. Phillips, John Doonan, Chris Rawlings
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1004989

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources
Cited by: 34
Author(s): Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan Miller, Egon Willighagen, Chris T. Evelo, Alexander R. Pico
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0062874

Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines
Cited by: 5
Author(s): Emilie Pasche, Patrick Ruch, Douglas Teodoro, Angela Huttner, Stéphan Juergen Harbarth, Julien Gobeill, Rolf Wipfli, Christian Lovis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0017005

Standard Biological Parts Knowledgebase
Cited by: 81
Author(s): Michal Galdzicki, César Rodríguez, Deepak Chandran, Herbert M. Sauro, John H. Gennari
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0076093

Semantic Annotation of Mutable Data
Cited by: 18
Author(s): Robert Morris, Lei Dou, James L. Howard, Maureen Kelly, David Lowery, Bertram Ludäscher, James Macklin, Paul J. Morris
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0089550

Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life
Cited by: 20
Author(s): Anne E. Thessen, Cynthia Parr
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0207595

Neo4j graph database realizes efficient storage performance of oilfield ontology
Cited by: 24
Author(s): Fengkui Gong, Yuhui Ma, Wenjuan Gong, Xiaoran Li, Chantao Li, Xiao Ming Yuan
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0179578

OWL2 benchmarking for the evaluation of knowledge based systems
Cited by: 2
Author(s): Sher Afgun Khan, Muhammad Abdul Qadir, Muhammad Azeem Abbas, Muhammad Afzal
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0219992

SinoPedia—A Linked Data Services platform for decentralized knowledge base
Cited by: 5
Author(s): Tao Chen, Zhang Yongjuan, Zhengjun Wang, Dongsheng Wang, Hui Li, Liu Wei
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0144578

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search
Cited by: 41
Author(s): Davide Alocci, Julien Mariethoz, Oliver Horlacher, Jerven Bolleman, Matthew P. Campbell, Frédérique Lisacek
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0217852

Split4Blank: Maintaining consistency while improving efficiency of loading RDF data with blank nodes
Cited by: 0
Author(s): Atsuko Yamaguchi, Yasunori Yamamoto
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0127677

AWSCS-A System to Evaluate Different Approaches for the Automatic Composition and Execution of Web Services Flows
Cited by: 1
Author(s): Bruno Tardiole Kuehne, Júlio Cézar Estrella, Luiz H. Nunes, Edvard Martins de Oliveira, Luis H. V. Nakamura, Carlos Henrique Gomes Ferreira, Regina Helena Carlucci Santana, Stephan Reiff-Marganiec, Marcos José Santana
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0107889

BioSWR – Semantic Web Services Registry for Bioinformatics
Cited by: 4
Author(s): Dmitry Repchevsky, Josep L. L. Gelpi
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0036759

Center of Excellence in Research Reporting in Neurosurgery - Diagnostic Ontology
Cited by: 4
Author(s): Amrapali Zaveri, Jatin Shah, Shreyasee Pradhan, Clarissa Garcia Rodrigues, Jacson Venâncio de Barros, Beng Ti Ang, Ricardo Pietrobon
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0028782

ProKinO: An Ontology for Integrative Analysis of Protein Kinases in Cancer
Cited by: 34
Author(s): Gurinder Gosal, Krys J. Kochut, Natarajan Kannan
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0198270

Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy
Cited by: 11
Author(s): Aravind Venkatesan, Gildas Tagny Ngompé, Nordine El Hassouni, Imène Chentli, Valentin Guignon, Clément Jonquet, Manuel Ruiz, Pierre Larmande
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0151573

PepeSearch: Semantic Data for the Masses
Cited by: 19
Author(s): Guillermo Vega-Gorgojo, Martin Giese, Simen Heggestøyl, Ahmet Soylu, Arild Waaler
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0160005

Knowledge Discovery from Biomedical Ontologies in Cross Domains
Cited by: 24
Author(s): Feichen Shen, Yugyung Lee
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0027506

Mining Relational Paths in Integrated Biomedical Data
Cited by: 31
Author(s): Bing He, Jie Tang, Ying Ding, Huijun Wang, Yongtao Sun, Jae Hong Shin, Bin Chen, Ganesh Moorthy, Judy Qiu, Pankaj B. Desai, David Wild
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0025513

The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web
Cited by: 93
Author(s): Janna Hastings, Leonid L. Chepelev, Egon Willighagen, Nico Adams, Christoph Steinbeck, Michel Dumontier
Software Mentions: 1
Published: about 13 years ago

10.1186/1749-8546-5-43

Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data
Cited by: 11
Author(s): Matthias Samwald, Michel Dumontier, Jun Zhao, Joanne S. Luciano, M. Scott Marshall, Kei Hoi Cheung
Software Mentions: 1
Published: almost 15 years ago

10.1186/1749-8546-5-27

Publishing Chinese medicine knowledge as Linked Data on the Web
Cited by: 14
Author(s): Jun Zhao
Software Mentions: 1
Published: almost 15 years ago

10.1186/1749-8546-5-2

Semantic Web for data harmonization in Chinese medicine
Cited by: 7
Author(s): Kei‐Hoi Cheung, Huajun Chen
Software Mentions: 1
Published: almost 15 years ago

10.1007/s12559-015-9347-7

Sherlock: A Semi-automatic Framework for Quiz Generation Using a Hybrid Semantic Similarity Measure
Cited by: 16
Author(s): Chenghua Lin, Dong Liu, Wei Pang, Zhe Wang
Software Mentions: 1
Published: over 9 years ago

10.1155/2018/6534041

EEG-Based Automatic Sleep Staging Using Ontology and Weighting Feature Analysis
Cited by: 16
Author(s): Bingtao Zhang, Tao Lei, Hong Liu, Hanshu Cai
Software Mentions: 1
Published: about 6 years ago

10.1093/database/bau130

Combining computational models, semantic annotations and simulation experiments in a graph database
Cited by: 40
Author(s): Ron Henkel, Olaf Wolkenhauer, Dagmar Waltemath
Software Mentions: 1
Published: almost 10 years ago

10.1093/database/bax018

AnnoSys—implementation of a generic annotation system for schema-based data using the example of biodiversity collection data
Cited by: 10
Author(s): Lutz Suhrbier, Wolf‐Henning Kusber, Okka Tschöpe, Anton Güntsch, Walter G. Berendsohn
Software Mentions: 1
Published: almost 8 years ago

10.1093/database/bay022

YummyData: providing high-quality open life science data
Cited by: 14
Author(s): Yasunori Yamamoto, Atsuko Yamaguchi, Andrea Splendiani
Software Mentions: 1
Published: almost 7 years ago

10.1093/database/baaa014

An open-source GIS-enabled lookup service for Nagoya Protocol party information
Cited by: 1
Author(s): Hendrikje Seifert, M. Weber, Frank Oliver Glöckner, Ivaylo Kostadinov
Software Mentions: 1
Published: almost 5 years ago

10.1093/database/baab014

An immunologically friendly classification of non-peptidic ligands
Cited by: 0
Author(s): Lindy Edwards, Rebecca Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette
Software Mentions: 1
Published: almost 4 years ago

10.1093/database/bay132

TogoGenome/TogoStanza: modularized Semantic Web genome database
Cited by: 6
Author(s): Toshiaki Katayama, Seiichiro Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yukiko Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi
Software Mentions: 1
Published: almost 6 years ago

10.1007/978-3-030-61527-7_9

Semantic Annotation of Predictive Modelling Experiments
Cited by: 1
Author(s): Ilin Tolovski, Sašo Džeroski, Panče Panov
Software Mentions: 1
Published: almost 5 years ago

10.3233/DS-170001

Knowledge-based biomedical Data Science
Cited by: 19
Author(s): Lawrence Hunter
Software Mentions: 1
Published: almost 7 years ago

10.3390/e21090903

A Formal Model for Semantic Computing Based on Generalized Probabilistic Automata
Cited by: 1
Author(s): Guangjian Huang, Shahbaz Hassan Wasti, Lina Wei, Yuncheng Jiang
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/6637810

TCDO: A Community-Based Ontology for Integrative Representation and Analysis of Traditional Chinese Drugs and Their Properties
Cited by: 1
Author(s): Yan Zhu, Lihong Liu, Bo Gao, Jing Liu, Xingchao Qiao, Chao‐Jie Lian, Yongqun He
Software Mentions: 1
Published: about 3 years ago

10.12688/f1000research.6349.2

agINFRA: a research data hub for agriculture, food and the environment
Cited by: 0
Author(s): Andreas Drakos, Vassilis Protonotarios, Nikos Manouselis
Software Mentions: 1
Published: over 9 years ago

10.12688/f1000research.6354.1

AGRIS: providing access to agricultural research data exploiting open data on the web
Cited by: 9
Author(s): Fabrizio Celli, Thembani Malapela, Karna Wegner, Imma Subirats, Elena Kokoliou, Johannes Keizer
Software Mentions: 1
Published: over 9 years ago

10.12688/f1000research.6848.2

Discovering, Indexing and Interlinking Information Resources
Cited by: 3
Author(s): Fabrizio Celli, Johannes Keizer, Yves Jaques, Stasinos Konstantopoulos, D. Vudragović
Software Mentions: 1
Published: about 9 years ago

10.12688/f1000research.5754.2

G-Links: a gene-centric link acquisition service
Cited by: 0
Author(s): Kazuki Oshita, Masaru Tomita, Kazuharu Arakawa
Software Mentions: 1
Published: about 9 years ago

10.3389/frai.2021.668220

Chatbots as a Tool to Scale Mentoring Processes: Individually Supporting Self-Study in Higher Education
Cited by: 13
Author(s): Alexander Tobias Neumann, Tamar Arndt, Laura Köbis, Roy Meissner, Anne Martin, Peter de Lange, Norbert Pengel, Ralf Klamma, Heinz-Werner Wollersheim
Software Mentions: 1
Published: over 3 years ago

10.3389/fdata.2021.701966

A Policy-Driven Approach to Secure Extraction of COVID-19 Data From Research Papers
Cited by: 4
Author(s): Lavanya Elluri, Aritran Piplai, Anantaa Kotal, Anupam Joshi, Karuna Pande Joshi
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2013.00171

Social networks for eHealth solutions on cloud
Cited by: 11
Author(s): Briti Deb, Satish Narayana Srirama
Software Mentions: 1
Published: almost 12 years ago

10.3389/fgene.2012.00197

The ontology-based answers (OBA) service: a connector for embedded usage of ontologies in applications
Cited by: 12
Author(s): Jürgen Dönitz, Edgar Wingender
Software Mentions: 1
Published: almost 13 years ago

10.3389/fgene.2019.01366

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis
Cited by: 75
Author(s): Wasin Poncheewin, Gerben D. A. Hermes, Jesse C. J. van Dam, Jasper J. Koehorst, Hauke Smidt, P.J. Schaap
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnhum.2014.00370

Pervasive brain monitoring and data sharing based on multi-tier distributed computing and linked data technology
Cited by: 47
Author(s): John K. Zao, Tchin Tze Gan, Chun Kai You, Cheng En Chung, Yu Te Wang, Sergio José Rodríguez Méndez, Tim Mullen, Chieh Cheng Yu, Christian Kothe, Ching Teng Hsiao, San Liang Chu, Ce Kuen Shieh, Tzyy-Ping Jung
Software Mentions: 1
Published: over 10 years ago

10.3389/fninf.2013.00007

A knowledge based approach to matching human neurodegenerative disease and animal models
Cited by: 5
Author(s): Sarah Maynard, Christopher J. Mungall, Suzanna Lewis, Fahim T. Imam, Maryann E. Martone
Software Mentions: 1
Published: almost 12 years ago

10.3389/fninf.2015.00013

Text mining for neuroanatomy using WhiteText with an updated corpus and a new web application
Cited by: 17
Author(s): Leon French, Po Liu, Olivia Marais, Tianna Koreman, Lucia Tseng, Artemis Y Lai, Paul Pavlidis
Software Mentions: 1
Published: over 9 years ago

10.3389/fninf.2017.00057

Extending XNAT Platform with an Incremental Semantic Framework
Cited by: 4
Author(s): Santiago Timón, M. Rincón, Rafael Martínez‐Tomás
Software Mentions: 1
Published: about 7 years ago

10.3389/fphar.2018.00435

A Semantic Transformation Methodology for the Secondary Use of Observational Healthcare Data in Postmarketing Safety Studies
Cited by: 15
Author(s): Anil Pacaci, Suat Gönül, Ali Anıl Sınacı, Mustafa Yuksel, Gökçe Banu Laleci Ertürkmen
Software Mentions: 1
Published: over 6 years ago

10.3389/frma.2020.00003

Ontology-Based Graphs of Research Communities: A Tool for Understanding Threat Reduction Networks
Cited by: 3
Author(s): John Ambrosiano, Benjamin Sims, Andrew W. Bartlow, William Rosenberger, Mark Ressler, Jeanne M. Fair
Software Mentions: 1
Published: over 4 years ago

10.1007/s10142-014-0364-5

Advances in genome studies in plants and animals
Cited by: 12
Author(s): R. Appels, Johan Nyström-Persson, Gabriel Keeble‐Gagnère
Software Mentions: 1
Published: over 10 years ago

10.1186/gb-2010-11-1-r3

NetPath: a public resource of curated signal transduction pathways
Cited by: 440
Author(s): Kumaran Kandasamy, S. Sujatha Mohan, Rajesh Raju, Shivakumar Keerthikumar, Gaurav Kumar, Abhilash Venugopal, Deepthi Telikicherla, Daniel J. Navarro, Suresh Mathivanan, Christian Pecquet, Sashi Kanth Gollapudi, Sudhir Gopal Tattikota, S. Sujatha Mohan, Hariprasad Padhukasahasram, Yashwanth Subbannayya, Renu Goel, Harrys K.C. Jacob, Jun Zhong, Raja Sekhar, Vishalakshi Nanjappa, Lavanya Balakrishnan, Roopashree Subbaiah, Y. L. Ramachandra, B. Abdul Rahiman, T. S. Keshava Prasad, Juntang Lin, Jon C. D. Houtman, Stephen Desiderio, Jean‐Christophe Renauld, Stefan N. Constantinescu, Osamu Ohara, Toshio Hirano, Masato Kubo, Sujay Singh, Purvesh Khatri, Sorin Drăghici, Gary D. Bader, Chris Sander, Warren J. Leonard, Akhilesh Pandey
Software Mentions: 1
Published: almost 15 years ago

10.5808/GI.2019.17.2.e13

Fully connecting the Observational Health Data Science and Informatics (OHDSI) initiative with the world of linked open data
Cited by: 4
Author(s): Juan M. Banda
Software Mentions: 1
Published: over 5 years ago

10.1186/s13742-015-0092-3

Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
Cited by: 12
Author(s): Mikel Egaña Aranguren, Mark D. Wilkinson
Software Mentions: 1
Published: almost 9 years ago

10.1093/glycob/cwab013

The glycoconjugate ontology (GlycoCoO) for standardizing the annotation of glycoconjugate data and its application
Cited by: 6
Author(s): Issaku Yamada, Matthew P. Campbell, Nathan Edwards, Leyla Jael Castro, Frédérique Lisacek, Julien Mariethoz, Tamiko Ono, René Ranzinger, Daisuke Shinmachi, Kiyoko F. Aoki‐Kinoshita
Software Mentions: 1
Published: over 3 years ago

10.1007/s13755-020-00130-8

Knowledge Graphs of Kawasaki Disease
Cited by: 9
Author(s): Zhisheng Huang, Qing Hu, Mingqun Liao, Cong Miao, Chengyi Wang, Guanghua Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/2047-2501-1-14

Graphical modeling and query language for hospitals
Cited by: 0
Author(s): Jānis Bārzdiņš, Juris Bārzdiņš, Edgars Rencis, Agris Šostaks
Software Mentions: 1
Published: about 11 years ago

10.1007/s13755-020-00128-2

Predicting the relationships between gut microbiota and mental disorders with knowledge graphs
Cited by: 12
Author(s): Ting Liu, Xueli Pan, Xu Wang, K. Anton Feenstra, Jaap Heringa, Zhisheng Huang
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12961-019-0453-y

ITEMAS ontology for healthcare technology innovation
Cited by: 6
Author(s): Alberto Moreno-Conde, Carlos Calderón, S Sánchez-Seda, Germán Antonio Escobar-Rodríguez, M López-Otero, Lorena Cussó, R Del-Cerro-García, María P. Segura-Sánchez, L Herrero-Urigüen, N Martí-Ras, M Albertí-Ibarz, Manuel Desco
Software Mentions: 1
Published: over 5 years ago

10.1049/htl.2015.0056

Enabling active and healthy ageing decision support systems with the smart collection of TV usage patterns
Cited by: 9
Author(s): Antonis Billis, Asterios Batziakas, Charalampos Bratsas, Marianna Tsatali, Μaria Karagianni, Panagiotis D. Bamidis
Software Mentions: 1
Published: over 8 years ago

10.1016/j.is.2013.05.007

On modeling context-aware social collaboration processes
Cited by: 12
Author(s): Vitaliy Liptchinsky, Roman Khazankin, Stefan Schulte, Benjamin Satzger, Hong Linh Truong, Schahram Dustdar
Software Mentions: 1
Published: over 10 years ago

10.4236/iim.2016.83006

Predicate Oriented Pattern Analysis for Biomedical Knowledge Discovery
Cited by: 12
Author(s): Feichen Shen, Hongfang Liu, Sunghwan Sohn, David W. Larson, Yugyung Lee
Software Mentions: 1
Published: almost 9 years ago

10.1200/CCI.20.00001

PRISM: A Platform for Imaging in Precision Medicine
Cited by: 17
Author(s): Ashish Sharma, Lawrence Tarbox, Tahsin Kurç, Jonathan P. Bona, Kirk E. Smith, Pradeeban Kathiravelu, Erich Bremer, Joel Saltz, Fred Prior
Software Mentions: 1
Published: about 4 years ago

10.1186/2041-1480-1-S1-S2

RKB: a Semantic Web knowledge base for RNA
Cited by: 4
Author(s): José Cruz-Toledo, Michel Dumontier, Marc Parisien, François Major
Software Mentions: 1
Published: almost 15 years ago

10.1186/2041-1480-1-S1-S5

Establishing a distributed system for the simple representation and integration of diverse scientific assertions
Cited by: 6
Author(s): Matthias Samwald, Holger Stenzhorn
Software Mentions: 1
Published: almost 15 years ago

10.1186/2041-1480-3-S1-S6

Linking genes to diseases with a SNPedia-Gene Wiki mashup
Cited by: 7
Author(s): Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su
Software Mentions: 1
Published: over 12 years ago

10.1186/2041-1480-2-S2-I1

Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting
Cited by: 32
Author(s): Larisa Soldatova, Susanna-Assunta Sansone, Susie Stephens, Nigam H. Shah
Software Mentions: 1
Published: over 13 years ago

10.1186/2041-1480-2-S2-S10

Integration and publication of heterogeneous text-mined relationships on the Semantic Web
Cited by: 35
Author(s): Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah
Software Mentions: 1
Published: over 13 years ago

10.1186/2041-1480-2-S2-S7

Developing a kidney and urinary pathway knowledge base
Cited by: 42
Author(s): Simon Jupp, Julie Klein, Joost P. Schanstra, Robert Stevens
Software Mentions: 1
Published: over 13 years ago

10.1186/2041-1480-2-S1-S3

Mapping between the OBO and OWL ontology languages
Cited by: 32
Author(s): Syed Hamid Tirmizi, Stuart Aitken, Dilvan de Abreu Moreira, Chris Mungall, Juan F. Sequeda, Nigam H. Shah, Daniel P. Miranker
Software Mentions: 1
Published: almost 14 years ago

10.1186/2041-1480-2-S1-S6

Linking the Resource Description Framework to cheminformatics and proteochemometrics
Cited by: 27
Author(s): Egon Willighagen, Jonathan Alvarsson, Annsofie Andersson, Martin Eklund, Samuel Lampa, Maris Lapins, Ola Spjuth, Jarl E. S. Wikberg
Software Mentions: 1
Published: almost 14 years ago

10.1186/2041-1480-3-5

The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms
Cited by: 4
Author(s): Priti Parikh, Jie Zheng, Flora J. Logan-Klumpler, Christian J. Stoeckert, Christos Louis, Pantelis Topalis, Anna V. Protasio, Amit P. Sheth, Mark Carrington, Matthew Berriman, Satya S. Sahoo
Software Mentions: 1
Published: over 12 years ago

10.1186/2041-1480-3-10

Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank
Cited by: 36
Author(s): Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute
Software Mentions: 1
Published: almost 13 years ago

10.1186/2041-1480-3-13

Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis
Cited by: 16
Author(s): Cui Tao, Yongqun He, Hannah Yang, Gregory A. Poland, Christopher G. Chute
Software Mentions: 1
Published: almost 13 years ago

10.1186/2041-1480-3-14

GalenOWL: Ontology-based drug recommendations discovery
Cited by: 36
Author(s): Charalampos Doulaverakis, George Nikolaidis, Athanassios Kleontas, Ioannis Kompatsiaris
Software Mentions: 1
Published: almost 13 years ago

Projects: cran: SPARQL

Papers Mentioning SPARQL 660