cran: SPARQL | Projects | Ecosyste.ms: Papers

10.1186/s13321-018-0271-1

A confidence predictor for logD using conformal regression and a support-vector machine
Cited by: 31
Author(s): Maris Lapins, Staffan Arvidsson, Samuel Lampa, Arvid Berg, Wesley Schaal, Jonathan Alvarsson, Ola Spjuth
Software Mentions: 2
Published: over 6 years ago

10.1007/s13218-020-00686-3

Ontologies and Data Management: A Brief Survey
Cited by: 16
Author(s): Thomas Schneider, Mantas Šimkus
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0252869

Streetonomics: Quantifying culture using street names
Cited by: 2
Author(s): Melanie Bancilhon, Marios Constantinides, Edyta P. Bogucka, Luca Maria Aiello, Daniele Quercia
Software Mentions: 2
Published: over 3 years ago

10.1186/1758-2946-3-38

The Quixote project: Collaborative and Open Quantum Chemistry data management in the Internet age
Cited by: 44
Author(s): Sam Adams, Pablo De-Castro, Pablo Echenique, Jorge Estrada, Marcus D. Hanwell, Peter Murray‐Rust, Paul Sherwood, Jens M. H. Thomas, J.E. Townsend
Software Mentions: 2
Published: about 13 years ago

10.1186/s13321-016-0170-2

The Open Spectral Database: an open platform for sharing and searching spectral data
Cited by: 9
Author(s): Stuart Chalk
Software Mentions: 2
Published: about 8 years ago

10.1007/s10115-020-01468-x

“Just-in-time” generation of datasets by considering structured representations of given consent for GDPR compliance
Cited by: 5
Author(s): Christophe Debruyne, Harshvardhan J. Pandit, David Lewis, Declan O’Sullivan
Software Mentions: 2
Published: over 4 years ago

10.1038/sdata.2018.271

Genome-wide polyadenylation site mapping datasets in the rice blast fungus Magnaporthe oryzae
Cited by: 3
Author(s): Marco Marconi, Ane Sesma, Julio Rodríguez‐Romero, María Lourdes Rosano González, Mark D. Wilkinson
Software Mentions: 2
Published: almost 6 years ago

10.1186/1758-2946-3-16

Semantic Web integration of Cheminformatics resources with the SADI framework
Cited by: 31
Author(s): Leonid L. Chepelev, Michel Dumontier
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-10-S10-S2

Semantic web data warehousing for caGrid
Cited by: 38
Author(s): James P. McCusker, Joshua Phillips, Alejandra González Beltrán, Anthony Finkelstein, Michael Krauthammer
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0040946

Identifying Novel Drug Indications through Automated Reasoning
Cited by: 16
Author(s): Luis Tari, Nguyen Vo, Shanshan Liang, Jagruti Patel, Chitta Baral, James J. Cai
Software Mentions: 2
Published: over 12 years ago

10.1186/s13326-021-00249-x

Linking common human diseases to their phenotypes; development of a resource for human phenomics
Cited by: 6
Author(s): Şenay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield
Software Mentions: 2
Published: over 3 years ago

10.1186/1758-2946-3-20

Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration
Cited by: 26
Author(s): Leonid L. Chepelev, Michel Dumontier
Software Mentions: 2
Published: over 13 years ago

10.1186/s13040-016-0102-8

Representing and querying disease networks using graph databases
Cited by: 72
Author(s): Artem Lysenko, Irina A. Roznovăţ, Mansoor Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-21417-7

Improving prediction of heart transplantation outcome using deep learning techniques
Cited by: 46
Author(s): Dennis Medved, Mattias Ohlsson, Peter Höglund, Bodil Andersson, Pierre Nugues, Johan Nilsson
Software Mentions: 2
Published: over 6 years ago

10.1007/978-3-030-59833-4_3

A Knowledge Retrieval Framework for Household Objects and Actions with External Knowledge
Cited by: 8
Author(s): Alexandros Vassiliades, Nick Bassiliades, Filippos Gouidis, Theodore Patkos
Software Mentions: 2
Published: almost 5 years ago

10.3390/s17102311

Building IoT Services for Aging in Place Using Standard-Based IoT Platforms and Heterogeneous IoT Products
Cited by: 41
Author(s): Sheik Mohammad Mostakim Fattah, Nak-Myoung Sung, Il-Yeup Ahn, Min-Woo Ryu, Jaeseok Yun
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0017243

Finding Complex Biological Relationships in Recent PubMed Articles Using Bio-LDA
Cited by: 84
Author(s): Huijun Wang, Ying Ding, Jie Tang, Xiao Dong, Bing He, Judy Qiu, David Wild
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0116656

Ontology-Based Data Integration between Clinical and Research Systems
Cited by: 73
Author(s): Sebastian Mate, Felix Köpcke, Dennis Toddenroth, Marcus Martin, Hans‐Ulrich Prokosch, Thomas Bürkle, Thomas Ganslandt
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13326-017-0160-y

Using semantics for representing experimental protocols
Cited by: 8
Author(s): Olga Giraldo, Alexander García, Federico López, Óscar Corcho
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2105-9-S4-S6

RDFScape: Semantic Web meets Systems Biology
Cited by: 27
Author(s): Andrea Splendiani
Software Mentions: 2
Published: over 16 years ago

10.1093/database/baw040

RegenBase: a knowledge base of spinal cord injury biology for translational research
Cited by: 10
Author(s): Alison Callahan, Saminda Abeyruwan, Hassan Al-Ali, Kazuhiko Sakurai, Adam R. Ferguson, Phillip G. Popovich, Nigam H. Shah, Ubbo Visser, John L. Bixby, Vance Lemmon
Software Mentions: 2
Published: almost 9 years ago

10.1093/database/baz067

SOCCOMAS: a FAIR web content management system that uses knowledge graphs and that is based on semantic programming
Cited by: 6
Author(s): Lars Vogt, Roman Baum, Philipp Bhatty, Christian Köhler, Sandra Meid, Björn Quast, Peter Grobe
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13326-017-0151-z

PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets
Cited by: 13
Author(s): Marija Djokic-Petrovic, Vladimir M Cvjetkovic, Jeremy J. Yang, Marko Živanović, David Wild
Software Mentions: 2
Published: about 7 years ago

10.1186/s12859-017-1979-z

Comparison, alignment, and synchronization of cell line information between CLO and EFO
Cited by: 4
Author(s): Edison Ong, Sirarat Sarntivijai, Simon Jupp, Helen Parkinson, Yongqun He
Software Mentions: 2
Published: almost 7 years ago

10.1093/database/bax025

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata
Cited by: 25
Author(s): Tim Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin Diesh, Nathan Dunn, Monica Muñoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good
Software Mentions: 2
Published: almost 8 years ago

10.1093/bioinformatics/btz227

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem
Cited by: 18
Author(s): Jin-Dong Kim, Yue Wang, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J. Callahan, K. Bretonnel Cohen
Software Mentions: 2
Published: over 5 years ago

10.1186/s13326-017-0154-9

Analysis and visualization of disease courses in a semantically-enabled cancer registry
Cited by: 13
Author(s): Ángel Esteban-Gil, Jesualdo Tomás Fernández-Breis, Martin Boeker
Software Mentions: 2
Published: about 7 years ago

10.1186/1472-6947-13-57

Applying representational state transfer (REST) architecture to archetype-based electronic health record systems
Cited by: 30
Author(s): Erik Sundvall, Mikael Nyström, Daniel Karlsson, Martin Eneling, Rong Chen, Håkan Örman
Software Mentions: 2
Published: over 11 years ago

10.1186/s13326-017-0136-y

RDFIO: extending Semantic MediaWiki for interoperable biomedical data management
Cited by: 2
Author(s): Samuel Lampa, Egon Willighagen, Pekka Kohonen, Ali King, Denny Vrandečić, Roland C. Grafström, Ola Spjuth
Software Mentions: 2
Published: about 7 years ago

10.1186/s13326-017-0133-1

An ontology-driven tool for structured data acquisition using Web forms
Cited by: 13
Author(s): Rafael S. Gonçalves, Samson W. Tu, Csongor Nyulas, Michael J. Tierney, Mark A. Musen
Software Mentions: 2
Published: over 7 years ago

10.1186/s13326-018-0176-y

DMTO: a realistic ontology for standard diabetes mellitus treatment
Cited by: 53
Author(s): Shaker El–Sappagh, Daehan Kwak, Farman Ali, Kyung Sup Kwak
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0122802

Construction of an Ortholog Database Using the Semantic Web Technology for Integrative Analysis of Genomic Data
Cited by: 12
Author(s): Hirokazu Chiba, Hiroyo Nishide, Ikuo Uchiyama
Software Mentions: 2
Published: over 9 years ago

10.1186/s12859-015-0469-4

An evidence-based approach to identify aging-related genes in Caenorhabditis elegans
Cited by: 9
Author(s): Alison Callahan, Juan José Cifuentes, Michel Dumontier
Software Mentions: 2
Published: almost 10 years ago

10.1093/database/bau064

Processing biological literature with customizable Web services supporting interoperable formats
Cited by: 12
Author(s): Rafał Rak, Riza Theresa Batista-Navarro, Jacob Carter, Andrew Rowley, Sophia Ananiadou
Software Mentions: 2
Published: over 10 years ago

10.1186/s13326-017-0112-6

SAFE: SPARQL Federation over RDF Data Cubes with Access Control
Cited by: 18
Author(s): Yasar Khan, Muhammad Saleem, Muntazir Mehdi, Aidan Hogan, Qaiser Mehmood, Dietrich Rebholz‐Schuhmann, Ratnesh Sahay
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pntd.0001458

A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi
Cited by: 5
Author(s): Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya S. Sahoo, Prashant Doshi, Rick L. Tarleton, Amit P. Sheth
Software Mentions: 2
Published: almost 13 years ago

10.1093/database/bav053

kpath: integration of metabolic pathway linked data
Cited by: 7
Author(s): Ismael Navas‐Delgado, María Jesús García-Godoy, Esteban López-Camacho, Maciej Rybiński, Armando Reyes-Palomares, Miguel Ángel Medina, José F. Aldana‐Montes
Software Mentions: 2
Published: almost 10 years ago

10.1093/database/baaa113

Large-scale regulatory and signaling network assembly through linked open data
Cited by: 1
Author(s): Marie Lefebvre, Alban Gaignard, Maxime Folschette, Jérémie Bourdon, Carito Guziołowski
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1002574

Assessing Drug Target Association Using Semantic Linked Data
Cited by: 132
Author(s): Bin Chen, Ying Ding, David Wild
Software Mentions: 2
Published: over 12 years ago

10.1093/database/bax059

BioSearch: a semantic search engine for Bio2RDF
Cited by: 19
Author(s): Wei Hu, Honglei Qiu, Junhui Huang, Michel Dumontier
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12911-016-0248-9

Semantic representation of reported measurements in radiology
Cited by: 6
Author(s): Heiner Oberkampf, Sonja Zillner, James A. Overton, Bernhard Bauer, Alexander Cavallaro, Michael Uder, Matthias Hammon
Software Mentions: 2
Published: almost 9 years ago

10.1093/database/bav049

An Ebola virus-centered knowledge base
Cited by: 13
Author(s): Maulik R. Kamdar, Michel Dumontier
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-9-S5-S1

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Cited by: 67
Author(s): Mikel Egaña Aranguren, Erick Antezana, Martin Kuiper, Robert Stevens
Software Mentions: 2
Published: over 16 years ago

10.1093/database/bax088

A semantic-based workflow for biomedical literature annotation
Cited by: 1
Author(s): Pedro Sernadela, José Luís Oliveira
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pcbi.1002854

Getting More Out of Biomedical Documents with GATE's Full Lifecycle Open Source Text Analytics
Cited by: 295
Author(s): Hamish Cunningham, Valentin Tablan, Angus Roberts, Kalina Bontcheva
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12911-018-0636-4

An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival
Cited by: 35
Author(s): Hansi Zhang, Yi Guo, Qian Li, Thomas J. George, Elizabeth Shenkman, François Modave, Jiang Bian
Software Mentions: 2
Published: over 6 years ago

10.1186/s13326-017-0127-z

Ontological interpretation of biomedical database content
Cited by: 7
Author(s): Filipe Santana da Silva, Ludger Jansen, Fred Freitas, Stefan Schulz
Software Mentions: 2
Published: over 7 years ago

10.1186/s12911-017-0424-6

Orchestrating differential data access for translational research: a pilot implementation
Cited by: 5
Author(s): Marco Brandizi, Olga Melnichuk, Raffael Bild, Florian Kohlmayer, Benedicto Rodriguez-Castro, Helmut Spengler, Klaus A. Kuhn, Wolfgang Kuchinke, Christian Ohmann, Timo Mustonen, Mikael Lindén, Tommi Nyrönen, Ilkka Lappalainen, Alvis Brāzma, Ugis Sarkans
Software Mentions: 2
Published: over 7 years ago

10.1093/pcp/pct178

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants
Cited by: 92
Author(s): Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Yosuke Aoki, Matsuyuki Shirota, Kengo Kinoshita
Software Mentions: 2
Published: almost 11 years ago

10.3390/s16071053

Closed-Loop Lifecycle Management of Service and Product in the Internet of Things: Semantic Framework for Knowledge Integration
Cited by: 28
Author(s): Min-Jung Yoo, Clément Grozel, Dimitris Kiritsis
Software Mentions: 2
Published: over 8 years ago

10.1186/s13326-016-0077-x

The Orthology Ontology: development and applications
Cited by: 22
Author(s): Jesualdo Tomás Fernández-Breis, Hirokazu Chiba, María del Carmen Legaz-García, Ikuo Uchiyama
Software Mentions: 2
Published: over 8 years ago

10.1186/s13326-016-0050-8

Reporting phenotypes in mouse models when considering body size as a potential confounder
Cited by: 9
Author(s): Anika Oellrich, Terrence F. Meehan, Helen Parkinson, Sirarat Sarntivijai, Jacqueline K. White, Natasha A. Karp
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj-cs.318

ShExML: improving the usability of heterogeneous data mapping languages for first-time users
Cited by: 14
Author(s): Herminio García-González, Iovka Boneva, Sławek Staworko, José Emilio Labra Gayo, Juan Manuel Cueva Lovelle
Software Mentions: 2
Published: about 4 years ago

10.12688/f1000research.10788.1

Recent advances in predicting gene–disease associations
Cited by: 30
Author(s): Kenneth Opap, Nicola Mulder
Software Mentions: 2
Published: over 7 years ago

10.1186/s13326-016-0053-5

Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards
Cited by: 7
Author(s): Guoqian Jiang, Julie Evans, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute
Software Mentions: 2
Published: over 8 years ago

10.1186/s13326-016-0075-z

Generation of open biomedical datasets through ontology-driven transformation and integration processes
Cited by: 24
Author(s): María del Carmen Legaz-García, José Antonio Miñarro-Giménez, Marcos Menárguez-Tortosa, Jesualdo Tomás Fernández-Breis
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-019-2693-9

PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison
Cited by: 19
Author(s): Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, Clément Jonquet, Amedeo Napoli, Adrien Coulet
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj-cs.335

Search, access, and explore life science nanopublications on the Web
Cited by: 1
Author(s): Fabio Giachelle, Dennis Dosso, Gianmaria Silvello
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj-cs.281

Towards FAIR protocols and workflows: the OpenPREDICT use case
Cited by: 9
Author(s): Remzi Çelebi, João Luiz Rebelo Moreira, Ahmed Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
Software Mentions: 2
Published: about 4 years ago

10.1186/s13326-015-0037-x

Colil: a database and search service for citation contexts in the life sciences domain
Cited by: 22
Author(s): Toyofumi Fujiwara, Yasunori Yamamoto
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj-cs.649

A semantic rule based digital fraud detection
Cited by: 2
Author(s): Mansoor Ahmed, Kainat Ansar, Cal B. Muckley, Abid Khan, Adeel Anjum, Muhammad Talha
Software Mentions: 2
Published: over 3 years ago

10.1186/1755-8794-2-66

A metadata approach for clinical data management in translational genomics studies in breast cancer
Cited by: 27
Author(s): Irene Papatheodorou, Charles Crichton, Lorna Morris, Peter H Maccallum, Jim Davies, James D. Brenton, Carlos Caldas
Software Mentions: 2
Published: almost 15 years ago

10.1186/s13326-015-0036-y

Ontology-based representation and analysis of host-Brucella interactions
Cited by: 8
Author(s): Yuling Lin, Zuoshuang Xiang, Yongqun He
Software Mentions: 2
Published: about 9 years ago

10.1186/s13326-015-0038-9

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
Cited by: 14
Author(s): Jesse C. J. van Dam, Jasper J. Koehorst, Peter J. Schaap, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 2
Published: about 9 years ago

10.1186/s13326-016-0100-2

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis
Cited by: 20
Author(s): Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yuling Lin, Alfred O. Hero, Barry Smith, Yongqun He
Software Mentions: 2
Published: about 8 years ago

10.1186/s13326-019-0197-1

Seeing the whole picture: integrated pre-surgery reports with PreOptique
Cited by: 1
Author(s): Guillermo Vega-Gorgojo, Laura Slaughter, Martin Giese
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-018-0411-5

Developing a healthcare dataset information resource (DIR) based on Semantic Web
Cited by: 4
Author(s): Jingyi Shi, Mingna Zheng, Lixia Yao, Yaorong Ge
Software Mentions: 2
Published: about 6 years ago

10.1186/2041-1480-5-46

Automatically exposing OpenLifeData via SADI semantic Web Services
Cited by: 12
Author(s): Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj.3811

Fish Ontology framework for taxonomy-based fish recognition
Cited by: 6
Author(s): Najib M. Ali, Haris Ahmed Khan, Amy Y-Hui Then, Chong Ving Ching, Manas Gaur, Sarinder Kaur Dhillon
Software Mentions: 2
Published: about 7 years ago

10.1002/ggn2.10050

Design of a FAIR digital data health infrastructure in Africa for COVID‐19 reporting and research
Cited by: 21
Author(s): Mirjam van Reisen, Francisca Oladipo, M.J.W. Stokmans, Mouhamed Mpezamihgo, Joseph Bamidele Awotunde, Erik Schultes, Mariam Basajja, Aliya Aktau, Samson Yohannes Amare, Getu Tadele Taye, Putu Hadi Purnama Jati, Kudakwashe Chindoza, Morgane Wirtz, M. El Ghardallou, Gertjan van Stam, Wondimu Ayele, Reginald Nalugala, Ibrahim Abdullahi, Obinna Osigwe, John Graybeal, Araya Abrha Medhanyie, Abdullahi Abubakar Kawu, Fenghong Liu, Katy Wolstencroft, Erik Flikkenschild, Yi Chun Lin, Joëlle Stocker, Mark A. Musen
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.1470

Emerging semantics to link phenotype and environment
Cited by: 15
Author(s): Anne E. Thessen, Daniel E. Bunker, Pier Luigi Buttigieg, Laurel Cooper, Wasila Dahdul, Sami Domisch, Nico M. Franz, Pankaj Jaiswal, Carolyn J. Lawrence‐Dill, Peter E. Midford, Christopher J. Mungall, Martı́n J. Ramı́rez, Chelsea D. Specht, Lars Vogt, Rutger A. Vos, Ramona Walls, Jeffrey W. White, Guanyang Zhang, Andrew R. Deans, Eva Huala, Suzanna Lewis, Paula M. Mabee
Software Mentions: 2
Published: almost 9 years ago

10.1186/2041-1480-4-37

PAV ontology: provenance, authoring and versioning
Cited by: 53
Author(s): Paolo Ciccarese, Stian Soiland‐Reyes, Khalid Belhajjame, Alasdair J. G. Gray, Carole Goble, Tim W. Clark
Software Mentions: 2
Published: almost 12 years ago

10.1186/2041-1480-5-S1-S3

Semantic Web repositories for genomics data using the eXframe platform
Cited by: 7
Author(s): Emily Merrill, Stéphane Corlosquet, Paolo Ciccarese, Tim W. Clark, Sudeshna Das
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-13-35

IntegromeDB: an integrated system and biological search engine
Cited by: 10
Author(s): Michael Baitaluk, Sergey Kozhenkov, Yulia Dubinina, Julia Ponomarenko
Software Mentions: 2
Published: almost 13 years ago

10.1186/2041-1480-5-31

CSEO – the Cigarette Smoke Exposure Ontology
Cited by: 8
Author(s): Erfan Younesi, Sam Ansari, Michaela Guendel, Shiva Ahmadi, Chris R. E. Coggins, Julia Hoeng, Martin Hofmann‐Apitius, Manuel C. Peitsch
Software Mentions: 2
Published: over 10 years ago

10.1186/2041-1480-4-40

The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines
Cited by: 36
Author(s): Erica Marcos, Bin Zhao, Yongqun He
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13326-015-0012-6

Semantic enrichment of longitudinal clinical study data using the CDISC standards and the semantic statistics vocabularies
Cited by: 11
Author(s): Hugo Leroux, Laurent Lefort
Software Mentions: 2
Published: over 9 years ago

10.1186/s13073-014-0071-9

NGS-Logistics: federated analysis of NGS sequence variants across multiple locations
Cited by: 16
Author(s): Amin Ardeshirdavani, Erika Souche, Luc Dehaspe, Jeroen Van Houdt, Joris Robert Vermeesch, Yves Moreau
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-11-S4-S24

Algorithms and semantic infrastructure for mutation impact extraction and grounding
Cited by: 33
Author(s): Jonas Bergman Laurila, Nona Naderi, René Witte, Alexandre Riazanov, Alexandre Kouznetsov, Christopher J. O. Baker
Software Mentions: 2
Published: almost 14 years ago

10.1186/2041-1480-5-20

My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models
Cited by: 12
Author(s): Olivier Palombi, Federico Ulliana, Valentin Favier, Jean-Claude Léon, Marie-Christine Rousset
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-13-S1-S10

A semantic web framework to integrate cancer omics data with biological knowledge
Cited by: 18
Author(s): Matthew Holford, James P. McCusker, Kei‐Hoi Cheung, Michael Krauthammer
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2008-9-5-r89

Calling on a million minds for community annotation in WikiProteins
Cited by: 129
Author(s): Barend Mons, Michael Ashburner, Christine Chichester, Erik M. van Mulligen, Marc Weeber, Johan T. den Dunnen, Gert-Jan van Ommen, Mark A. Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel L. Packer, Roberto Carlos dos Santos Pacheco, Suzanna Lewis, Alfred R. Berkeley, William C. Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Jan Roes, Katy Börner, Amos Marc Bairoch
Software Mentions: 2
Published: almost 17 years ago

10.1186/2041-1480-5-11

Benchmarking infrastructure for mutation text mining
Cited by: 4
Author(s): Artjom Klein, Alexandre Riazanov, Matthew Hindle, Christopher J. O. Baker
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2105-10-S10-S7

GoWeb: a semantic search engine for the life science web
Cited by: 45
Author(s): Heiko Dietze, Michael Schroeder
Software Mentions: 2
Published: about 15 years ago

10.1186/2041-1480-4-S1-S5

Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data
Cited by: 19
Author(s): Leyla Jael Castro, Casey McLaughlin, Alexander García
Software Mentions: 2
Published: almost 12 years ago

10.1186/2041-1480-5-13

Panacea, a semantic-enabled drug recommendations discovery framework
Cited by: 24
Author(s): Charalampos Doulaverakis, George Nikolaidis, Athanassios Kleontas, Ioannis Kompatsiaris
Software Mentions: 2
Published: almost 11 years ago

10.1186/2041-1480-5-19

The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events
Cited by: 16
Author(s): Yuling Lin, Yongqun He
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13326-015-0029-x

A framework for ontology-based question answering with application to parasite immunology
Cited by: 22
Author(s): Amir Asiaee, Todd Minning, Prashant Doshi, Rick L. Tarleton
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2016.00641

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base
Cited by: 23
Author(s): Alejandro Rodríguez-Iglesias, Alejandro Rodríguez‐González, Alistair G. Irvine, Ane Sesma, Martin Urban, K. E. Hammond‐Kosack, Mark D. Wilkinson
Software Mentions: 2
Published: over 8 years ago

10.1002/minf.201200070

PharmaTrek: A Semantic Web Explorer for Open Innovation in Multitarget Drug Discovery
Cited by: 17
Author(s): Maria C. Carrascosa, Oriol L. Massaguer, Jordi Mestres
Software Mentions: 2
Published: over 12 years ago

10.1186/2041-1480-3-16

Profiling structured product labeling with NDF-RT and RxNorm
Cited by: 14
Author(s): Qian Zhu, Guoqian Jiang, Christopher G. Chute
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2009-10-5-r58

The Cell Cycle Ontology: An application ontology for the representation and integrated analysis of the cell cycle process
Cited by: 47
Author(s): Erick Antezana, Mikel Egaña, Ward Blondé, Aitzol Illarramendi, Iñaki Bilbao, Bernard De Baets, Robert Stevens, Vladimir Mironov, Martin Kuiper
Software Mentions: 2
Published: almost 16 years ago

10.3389/fninf.2013.00018

NeuroLex.org: an online framework for neuroscience knowledge
Cited by: 66
Author(s): Stephen Larson, Maryann E. Martone
Software Mentions: 2
Published: almost 12 years ago

10.3389/fninf.2014.00021

Pain Research Forum: application of scientific social media frameworks in neuroscience
Cited by: 8
Author(s): Sudeshna Das, Patricia G. McCaffrey, Megan W. T. Talkington, Neil A Andrews, Stéphane Corlosquet, Adrian J. Ivinson, Tim W. Clark
Software Mentions: 2
Published: over 10 years ago

10.1186/s12859-019-3192-8

Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers
Cited by: 6
Author(s): Jonathan P. Bona, Mathias Brochhausen, William R. Hogan
Software Mentions: 2
Published: almost 5 years ago

10.1186/2041-1480-4-S1-S6

Query enhancement through the practical application of ontology: the IEDB and OBI
Cited by: 15
Author(s): Randi Vita, James A. Overton, Jason A. Greenbaum, Alessandro Sette, Bjoern Peters
Software Mentions: 2
Published: almost 12 years ago

10.1111/1751-7915.13794

Galactocerebroside biosynthesis pathways of <i>Mycoplasma</i> species: an antigen triggering Guillain–Barré–Stohl syndrome
Cited by: 5
Author(s): Erika Gaspari, Jasper J. Koehorst, Joachim Frey, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 2
Published: over 3 years ago

10.1186/s13073-019-0686-y

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database
Cited by: 33
Author(s): Jake Lever, Martin Jones, Arpad Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J.M. Jones
Software Mentions: 2
Published: almost 5 years ago

10.1186/2041-1480-2-S2-S1

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
Cited by: 79
Author(s): Joanne S. Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim W. Clark, Christine Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, James P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud’hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-12-S10-S17

Scenario driven data modelling: a method for integrating diverse sources of data and data streams
Cited by: 4
Author(s): Shelton D. Griffith, Daniel J. Quest, Thomas Brettin, Robert W. Cottingham
Software Mentions: 2
Published: about 13 years ago

Projects: cran: SPARQL

Papers Mentioning SPARQL 660