cran: SPARQL | Projects | Ecosyste.ms: Papers

10.3390/s19081747

Meaningful Integration of Data from Heterogeneous Health Services and Home Environment Based on Ontology
Cited by: 32
Author(s): Cong Peng, Prashant Goswami
Software Mentions: 3
Published: over 5 years ago

10.3390/s19214798

MicroServices Suite for Smart City Applications
Cited by: 23
Author(s): Claudio Badii, Pierfrancesco Bellini, Angelo Difino, Paolo Nesi, Gianni Pantaleo, Michela Paolucci
Software Mentions: 3
Published: about 5 years ago

10.3390/s18124226

Design Methodology of Microservices to Support Predictive Analytics for IoT Applications
Cited by: 25
Author(s): Sajjad Ali, Muhammad Aslam Jarwar, Ilyoung Chong
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2105-10-309

SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services
Cited by: 58
Author(s): Damian D. G. Gessler, Gary Schiltz, Gregory D. May, Shulamit Avraham, Christopher D. Town, David M. Grant, Rex T. Nelson
Software Mentions: 3
Published: about 15 years ago

10.3390/s19020351

Embracing the Future Internet of Things
Cited by: 22
Author(s): Flavio Cirillo, Fang–Jing Wu, Gürkan Solmaz, Ernő Kovács
Software Mentions: 3
Published: almost 6 years ago

10.3390/s20041152

A Dynamic Dashboarding Application for Fleet Monitoring Using Semantic Web of Things Technologies
Cited by: 9
Author(s): Sander Vanden Hautte, Pieter Moens, Joachim Van Herwegen, Dieter De Paepe, Bram Steenwinckel, Stijn Verstichel, Femke Ongenae, Sofie Van Hoecke
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12911-018-0635-5

OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system
Cited by: 17
Author(s): Juan Antonio Lossio-Ventura, William R. Hogan, François Modave, Yi Guo, Zhe He, Xi Yang, Hansi Zhang, Jiang Bian
Software Mentions: 3
Published: over 6 years ago

10.3390/s16071022

Collaboration-Centred Cities through Urban Apps Based on Open and User-Generated Data
Cited by: 14
Author(s): Unai Aguilera, Diego López-de-Ipiña, Jorge Pérez
Software Mentions: 3
Published: over 8 years ago

10.3390/s18020474

Design and Implementation of Cloud-Centric Configuration Repository for DIY IoT Applications
Cited by: 37
Author(s): Shabir Ahmad, Hang Lei, Do‐Hyeun Kim
Software Mentions: 3
Published: almost 7 years ago

10.3390/s21165435

An Indoor Navigation Methodology for Mobile Devices by Integrating Augmented Reality and Semantic Web
Cited by: 5
Author(s): Jesús Iván Rubio-Sandoval, José-Lázaro Martínez-Rodríguez, Iván López-Arévalo, Ana B. Ríos-Alvarado, Adolfo Josué Rodríguez-Rodríguez, David Tomás Vargas-Requena
Software Mentions: 3
Published: over 3 years ago

10.1186/s12911-020-01341-5

KGen: a knowledge graph generator from biomedical scientific literature
Cited by: 25
Author(s): Anderson Rossanez, Júlio Cesar dos Reis, Ricardo da Silva Torres, Hélène de Ribaupierre
Software Mentions: 3
Published: almost 4 years ago

10.7717/peerj.3997

Indicators for the use of robotic labs in basic biomedical research: a literature analysis
Cited by: 9
Author(s): Paul Groth, Jessica Cox
Software Mentions: 3
Published: about 7 years ago

10.3390/s150924054

A User-Centric Knowledge Creation Model in a Web of Object-Enabled Internet of Things Environment
Cited by: 19
Author(s): Muhammad Golam Kibria, Sheik Mohammad Mostakim Fattah, Kwanghyeon Jeong, Ilyoung Chong, Youn Kwae Jeong
Software Mentions: 3
Published: about 9 years ago

10.3390/s18072052

A Plug-and-Play Human-Centered Virtual TEDS Architecture for the Web of Things
Cited by: 29
Author(s): Dixys Hernández Rojas, Tiago M. Fernández‐Caramés, Paula Fraga‐Lamas, Carlos J. Escudero
Software Mentions: 3
Published: over 6 years ago

10.3390/s20040953

IoT-Stream: A Lightweight Ontology for Internet of Things Data Streams and Its Use with Data Analytics and Event Detection Services
Cited by: 52
Author(s): Tarek Elsaleh, Shirin Enshaeifar, Roonak Rezvani, Sahr Thomas Acton, Valentinas Janeiko, María Bermúdez-Edo
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0230500

Deep learning based searching approach for RDF graphs
Cited by: 4
Author(s): Hatem Soliman
Software Mentions: 3
Published: over 4 years ago

10.1155/2014/560296

OntoTrader: An Ontological Web Trading Agent Approach for Environmental Information Retrieval
Cited by: 3
Author(s): Luís Iribarne, Nicolás Padilla, Rosa Ayala, José Andrés Asensio, Javier Criado
Software Mentions: 3
Published: almost 11 years ago

10.1242/dev.196097

Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms
Cited by: 9
Author(s): Stephanie H. Nowotarski, Erin L Davies, Sofia Robb, E. J. Ross, Nicolas Matentzoglu, Viraj Doddihal, Mol Mir, Melainia McClain, Alejandro Sánchez Alvarado
Software Mentions: 3
Published: over 3 years ago

10.1093/database/baz106

Enabling semantic queries across federated bioinformatics databases
Cited by: 22
Author(s): Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson‐Rechavi, Christophe Dessimoz
Software Mentions: 3
Published: almost 6 years ago

10.3390/s120709286

Model-Driven Methodology for Rapid Deployment of Smart Spaces Based on Resource-Oriented Architectures
Cited by: 13
Author(s): Iván Corredor, Ana M. Bernardos, Josué Iglesias, José R. Casar
Software Mentions: 3
Published: over 12 years ago

10.1186/2041-1480-2-S1-S1

Biomedical semantics in the Semantic Web
Cited by: 12
Author(s): Andrea Splendiani, Albert Burger, Adrian Paschke, Paolo Romano, M. Scott Marshall
Software Mentions: 3
Published: over 13 years ago

10.1038/s41597-020-0409-7

Semantic concept schema of the linear mixed model of experimental observations
Cited by: 6
Author(s): Hanna Ćwiek‐Kupczyńska, Katarzyna Filipiak, Augustyn Markiewicz, Philippe Rocca-Serra, Alejandra González-Beltrán, Susanna Assunta Sansone, Émilie Millet, Fred van Eeuwijk, Agnieszka Ławrynowicz, Paweł Krajewski
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-27946-5

Probabilistic Prognostic Estimates of Survival in Metastatic Cancer Patients (PPES-Met) Utilizing Free-Text Clinical Narratives
Cited by: 16
Author(s): Imon Banerjee, Michael F. Gensheimer, Suzanne Bakken Henry, S. Aggarwal, Daniel T. Chang
Software Mentions: 3
Published: over 6 years ago

10.1038/s41597-019-0241-0

Distributed radiomics as a signature validation study using the Personal Health Train infrastructure
Cited by: 36
Author(s): Zhenwei Shi, Ivan Zhovannik, Alberto Traverso, Frank J. W. M. Dankers, Timo M. Deist, Petros Kalendralis, R. Monshouwer, Johan Bussink, Rianne Fijten, Hugo J.W.L. Aerts, André Dekker, Leonard Wee
Software Mentions: 3
Published: about 5 years ago

10.1186/2041-1480-4-6

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
Cited by: 27
Author(s): Toshiaki Katayama, Mark D. Wilkinson, Gos Micklem, Seiichiro Kawashima, Atsuko Yamaguchi, Mitsuteru Nakao, Yasunori Yamamoto, Shinobu Okamoto, Kenta Oouchida, Hong Woo Chun, Jan Aerts, Hammad Afzal, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, François Belleau, Jerven Bolleman, Raoul Jean Pierre Bonnal, Brad Chapman, Peter J. A. Cock, Tore Eriksson, Paul M. Gordon, Naohisa Goto, Kazuhiro Hayashi, Heiko Horn, Ryosuke Ishiwata, Eli Kaminuma, Arek Kasprzyk, Hideya Kawaji, Nobuhiro Kido, Young Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Kyung Hoon Kwon, Alberto Labarga, Anna‐Lena Lamprecht, Yuling Lin, Pierre Livet, Luke McCarthy, Hideyuki Morita, Katsuhiko Murakami, Koji Nagao, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Keiichiro Ono, Kazuki Oshita, Keun Joon Park, Pjotr Prins, Taro Saito, Matthias Samwald, Venkata Satagopam, Yasumasa Shigemoto, Richard N. Smith, Andrea Splendiani, Hideaki Sugawara, James Taylor, Rutger A. Vos, David Withers, Chisato Yamasaki, Christian M. Zmasek, Shoko Kawamoto, Kosaku Okubo, Kiyoshi Asai, Toshihisa Takagi
Software Mentions: 3
Published: almost 12 years ago

10.1186/1471-2105-12-218

OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript
Cited by: 36
Author(s): Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen Parkinson, Morris A. Swertz
Software Mentions: 3
Published: over 13 years ago

10.1186/1471-2164-13-S4-S10

Automated extraction and semantic analysis of mutation impacts from the biomedical literature
Cited by: 30
Author(s): Nona Naderi, René Witte
Software Mentions: 3
Published: almost 13 years ago

10.1038/s41597-019-0046-1

Navigating in vitro bioactivity data by investigating available resources using model compounds
Cited by: 1
Author(s): Sten Ilmjärv, Fiona Augsburger, Jerven Bolleman, Robin Liechti, Alan Bridge, Jenny Sandström, Vincent Jaquet, Ioannis Xenarios, Karl-Heinz Krause
Software Mentions: 3
Published: over 5 years ago

10.1186/1758-2946-2-7

Collaborative development of predictive toxicology applications
Cited by: 94
Author(s): Barry Hardy, Nicki Douglas, Christoph Helma, Micha Rautenberg, Nina Jeliazkova, Vedrin Jeliazkov, Ivelina Nikolova, Romualdo Benigni, Olga Tcheremenskaia, Stefan Krämer, Tobias Girschick, Fabian Buchwald, Jörg Wicker, Andreas Karwath, Martin Gütlein, Andreas Maunz, Haralambos Sarimveis, Georgia Melagraki, Antreas Afantitis, Pantelis Sopasakis, D.T. Gallagher, Vladimir Poroikov, Д. А. Филимонов, Alexey Zakharov, Alexey Lagunin, Tatyana A. Gloriozova, С. С. Новиков, N. P. Skvortsova, Dmitry Druzhilovsky, Sunil Kumar Chawla, Indira Ghosh, Surajit Ray, Hitesh Patel, Sylvia Escher
Software Mentions: 3
Published: about 14 years ago

10.1186/1471-2105-11-S12-S7

SADI, SHARE, and the in silico scientific method
Cited by: 30
Author(s): Mark D. Wilkinson, Erin McCarthy, Benjamin P. Vandervalk, David Withers, Edward A. Kawas, Soroush Samadian
Software Mentions: 3
Published: almost 14 years ago

10.1186/1758-2946-3-18

AMBIT RESTful web services: an implementation of the OpenTox application programming interface
Cited by: 58
Author(s): Nina Jeliazkova, Vedrin Jeliazkov
Software Mentions: 3
Published: over 13 years ago

10.3390/s141122039

IoT-Based User-Driven Service Modeling Environment for a Smart Space Management System
Cited by: 19
Author(s): Hoan-Suk Choi, Woo-Seop Rhee
Software Mentions: 3
Published: about 10 years ago

10.1186/s12859-015-0761-3

An automated real-time integration and interoperability framework for bioinformatics
Cited by: 8
Author(s): Pedro Lopes, José Luís Oliveira
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0231916

Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge
Cited by: 1
Author(s): Lance M. Hannestad, Vlado Dančík, Meera Godden, Imelda W. Suen, Kenneth C. Huellas-Bruskiewicz, Benjamin M. Good, Christopher J. Mungall, Richard Bruskiewich
Software Mentions: 3
Published: over 3 years ago

10.1186/s13326-017-0174-5

OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system
Cited by: 40
Author(s): Viktor Senderov, Kiril Simov, Nico M. Franz, Pavel Stoev, Terry Catapano, Donat Agosti, Guido Sautter, Robert Morris, Lyubomir Penev
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13326-016-0111-z

Consolidating drug data on a global scale using Linked Data
Cited by: 20
Author(s): Milos Jovanovik, Dimitar Trajanov
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13326-016-0079-8

NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease
Cited by: 16
Author(s): Anandhi Iyappan, Shweta Bagewadi Kawalia, Tamara Raschka, Martin Hofmann‐Apitius, Philipp Senger
Software Mentions: 3
Published: over 8 years ago

10.1002/mp.14322

FAIR‐compliant clinical, radiomics and DICOM metadata of RIDER, interobserver, Lung1 and head‐Neck1 TCIA collections
Cited by: 16
Author(s): Petros Kalendralis, Zhenwei Shi, Alberto Traverso, Ananya Choudhury, Matthijs Sloep, Ivan Zhovannik, Martijn P.A. Starmans, Detlef Grittner, Peter Feltens, R. Monshouwer, Stefan Klein, Rianne Fijten, Hugo J.W.L. Aerts, André Dekker, Johan van Soest, Leonard Wee
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2105-10-S10-S11

BioGateway: a semantic systems biology tool for the life sciences
Cited by: 61
Author(s): Erick Antezana, Ward Blondé, Mikel Egaña, Alistair Rutherford, Robert Stevens, Bernard De Baets, Vladimir Mironov, Martin Kuiper
Software Mentions: 3
Published: about 15 years ago

10.1093/molbev/msz150

Advances and Applications in the Quest for Orthologs
Cited by: 68
Author(s): Natasha Glover, Christophe Dessimoz, Ingo Ebersberger, Kristoffer Forslund, Toni Gabaldón, Jaime Huerta-Cepas, Maria Jesus Martin, Matthieu Muffato, Mateus Patrício, Cécile Pereira, Alan Wilter Sousa da Silva, Yan Wang, Erik L. L. Sonnhammer, Paul D. Thomas
Software Mentions: 3
Published: over 5 years ago

10.1186/s13326-017-0146-9

Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data
Cited by: 16
Author(s): Alokkumar Jha, Yasar Khan, Muntazir Mehdi, Rezaul Karim, Qaiser Mehmood, Achille Zappa, Dietrich Rebholz‐Schuhmann, Ratnesh Sahay
Software Mentions: 3
Published: about 7 years ago

10.1155/2014/957231

BioTCM-SE: A Semantic Search Engine for the Information Retrieval of Modern Biology and Traditional Chinese Medicine
Cited by: 3
Author(s): Xi Chen, Huajun Chen, Xuan Bi, Peiqin Gu, Jiaoyan Chen, Zhaohui Wu
Software Mentions: 3
Published: almost 11 years ago

10.1002/mp.13844

Technical Note: Ontology‐guided radiomics analysis workflow (O‐RAW)
Cited by: 35
Author(s): Zhenwei Shi, Alberto Traverso, Johan van Soest, André Dekker, Leonard Wee
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-017-1840-4

BioCarian: search engine for exploratory searches in heterogeneous biological databases
Cited by: 10
Author(s): Nazar Zaki, Chandana Tennakoon
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0165395

TCGA Expedition: A Data Acquisition and Management System for TCGA Data
Cited by: 56
Author(s): Uma Chandran, Olga Medvedeva, M. Michael Barmada, Philip D. Blood, Anish Chakka, Soumya Luthra, Antonio M. Ferreira, Kim F. Wong, Adrian V. Lee, Zhihui Zhang, Robert Budden, James R. Scott, Annerose Berndt, Jeremy M. Berg, Rebecca S. Jacobson
Software Mentions: 3
Published: about 8 years ago

10.12688/wellcomeopenres.15355.2

GeneDB and Wikidata
Cited by: 2
Author(s): Magnus Manske, Ulrike Böhme, Christoph Püthe, Matthew Berriman
Software Mentions: 3
Published: about 5 years ago

10.3897/zookeys.150.1766

Data issues in the life sciences
Cited by: 93
Author(s): Anne E. Thessen, David J. Patterson
Software Mentions: 3
Published: almost 13 years ago

10.1186/2041-1480-6-3

Implementation of linked data in the life sciences at BioHackathon 2011
Cited by: 15
Author(s): Kiyoko F. Aoki‐Kinoshita, Akira R. Kinjo, Mizuki Morita, Yoshinobu Igarashi, Yi An Chen, Yasumasa Shigemoto, Takatomo Fujisawa, Yukie Akune, Takeo Katoda, Anna Kokubu, Mori Takaaki, Mitsuteru Nakao, Seiichiro Kawashima, Shinobu Okamoto, Toshiaki Katayama, Soichi Ogishima
Software Mentions: 3
Published: almost 10 years ago

10.1016/j.patter.2020.100155

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response
Cited by: 54
Author(s): Justin Reese, Deepak Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica Munoz‐Torres, Melissa Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
Software Mentions: 3
Published: almost 4 years ago

10.1155/2020/3041498

SCALEUS-FD: A FAIR Data Tool for Biomedical Applications
Cited by: 5
Author(s): Arnaldo Pereira, Rui Pedro Lopes, José Luís Oliveira
Software Mentions: 3
Published: about 4 years ago

10.1186/1471-2105-12-98

CDAO-Store: Ontology-driven Data Integration for Phylogenetic Analysis
Cited by: 20
Author(s): Brandon Chisham, Ben Wright, Hieu Giang Le, Tran Cao Son, Enrico Pontelli
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0191917

Reducing vertices in property graphs
Cited by: 4
Author(s): Dominik Tomaszuk, Karol Pąk
Software Mentions: 3
Published: almost 7 years ago

10.1186/2041-1480-5-5

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Cited by: 47
Author(s): Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki‐Kinoshita, Seiichiro Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Ono Hiromasa, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi An Chen, Hirokazu Chiba, Peter J. A. Cock, K. Bretonnel Cohen, Alexandru Constantin, Geraint Duck, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Naohisa Goto, Robert Hoehndorf, Yoshinobu Igarashi, Hidetoshi Itaya, Maori Ito, Wataru Iwasaki, Matúš Kalaš, Takeo Katoda, Taejoon Kim, Anna Kokubu, Yusuke Komiyama, Masaaki Kotera, Camille Laibe, Hilmar Lapp, Thomas Lütteke, M. Scott Marshall, Mori Takaaki, Hiroshi Mori, Mizuki Morita, Katsuhiko Murakami, Mitsuteru Nakao, Hisashi Narimatsu, Hiroyo Nishide, Yosuke Nishimura, Johan Nyström-Persson, Soichi Ogishima, Yasunobu Okamura, Shujiro Okuda, Kazuki Oshita, Nicolle H. Packer, Pjotr Prins, René Ranzinger, Philippe Rocca-Serra, Susanna Assunta Sansone, Hiromichi Sawaki, Sung Ho Shin, Andrea Splendiani, Francesco Strozzi, Shu Tadaka, Filip V. Toukach, Ikuo Uchiyama, Masahito Umezaki, Rutger A. Vos, Patricia L. Whetzel, Issaku Yamada, Chisato Yamasaki, Riu Yamashita, William S. York, Christian M. Zmasek, Shoko Kawamoto, Toshihisa Takagi
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13326-016-0072-2

PhenoImageShare: an image annotation and query infrastructure
Cited by: 12
Author(s): Solomon Adebayo, Kenneth McLeod, Ilinca Tudose, David Osumi-Sutherland, Tony Burdett, Richard Baldock, Albert Burger, Helen Parkinson
Software Mentions: 3
Published: over 8 years ago

10.1021/acs.jcim.0c01322

Automated Calibration of a Poly(oxymethylene) Dimethyl Ether Oxidation Mechanism Using the Knowledge Graph Technology
Cited by: 12
Author(s): Jiaru Bai, Rory Geeson, Feroz Farazi, Sebastian Mosbach, Jethro Akroyd, Eric J. Bringley, Markus Kraft
Software Mentions: 3
Published: over 3 years ago

10.1155/2014/506740

Using Data Crawlers and Semantic Web to Build Financial XBRL Data Generators: The SONAR Extension Approach
Cited by: 1
Author(s): Miguel Ángel Rodríguez-García, Alejandro Rodríguez-González, Ricardo Colomo‐Palacios, Rafael Valencia-Garcı́a, Juan Miguel Gómez-Berbís, Francisco García‐Sánchez
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj.6739

Ozymandias: a biodiversity knowledge graph
Cited by: 18
Author(s): Roderic Page
Software Mentions: 3
Published: over 5 years ago

10.1093/database/baw015

Wikidata as a semantic framework for the Gene Wiki initiative
Cited by: 47
Author(s): Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su
Software Mentions: 3
Published: almost 9 years ago

10.3390/s150204470

Architecture of a Service-Enabled Sensing Platform for the Environment
Cited by: 23
Author(s): Alexander Kotsev, Francesco Pantisano, Sven Schade, Simon Jirka
Software Mentions: 3
Published: almost 10 years ago

10.1186/2041-1480-4-S1-S6

Query enhancement through the practical application of ontology: the IEDB and OBI
Cited by: 15
Author(s): Randi Vita, James A. Overton, Jason A. Greenbaum, Alessandro Sette, Bjoern Peters
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2105-16-S10-S3

Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task
Cited by: 18
Author(s): Jin-Dong Kim, Jung‐Jae Kim, Xu Han, Dietrich Rebholz‐Schuhmann
Software Mentions: 2
Published: over 9 years ago

10.1186/2041-1480-3-16

Profiling structured product labeling with NDF-RT and RxNorm
Cited by: 14
Author(s): Qian Zhu, Guoqian Jiang, Christopher G. Chute
Software Mentions: 2
Published: almost 13 years ago

10.1186/1471-2105-9-S5-S1

Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Cited by: 67
Author(s): Mikel Egaña Aranguren, Erick Antezana, Martin Kuiper, Robert Stevens
Software Mentions: 2
Published: over 16 years ago

10.1093/bioinformatics/btt141

A self-updating road map of The Cancer Genome Atlas
Cited by: 31
Author(s): David E. Robbins, Alexander Grüneberg, Helena F. Deus, Murat M. Tanik, Jonas S. Almeida
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2105-15-257

The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web
Cited by: 10
Author(s): Brian J. Stucky, John Deck, Tom Conlin, Lukasz Ziemba, Nico Cellinese, Robert Guralnick
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-10-S10-S13

OGO: an ontological approach for integrating knowledge about orthology
Cited by: 17
Author(s): José Antonio Miñarro-Giménez, Marisa Madrid, Jesualdo Tomás Fernández‐Breis
Software Mentions: 2
Published: about 15 years ago

10.1186/2041-1480-2-S2-S1

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
Cited by: 79
Author(s): Joanne S. Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim W. Clark, Christine Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, James P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud’hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier
Software Mentions: 2
Published: over 13 years ago

10.1186/2041-1480-2-S2-S3

HyQue: evaluating hypotheses using Semantic Web technologies
Cited by: 33
Author(s): Alison Callahan, Michel Dumontier, Nigam H. Shah
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2105-12-257

BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results
Cited by: 106
Author(s): Ubbo Visser, Saminda Abeyruwan, Uma D. Vempati, Robin P. Smith, Vance Lemmon, Stephan C. Schürer
Software Mentions: 2
Published: over 13 years ago

10.1186/2041-1480-2-9

Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology
Cited by: 25
Author(s): Yuling Lin, Zuoshuang Xiang, Yongqun He
Software Mentions: 2
Published: about 13 years ago

10.1093/bioinformatics/btz227

Open Agile text mining for bioinformatics: the PubAnnotation ecosystem
Cited by: 18
Author(s): Jin-Dong Kim, Yue Wang, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J. Callahan, K. Bretonnel Cohen
Software Mentions: 2
Published: over 5 years ago

10.1186/2041-1480-2-8

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation
Cited by: 106
Author(s): Mark D. Wilkinson, Benjamin P. Vandervalk, Erin McCarthy
Software Mentions: 2
Published: almost 14 years ago

10.1186/2041-1480-3-S1-S7

OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia
Cited by: 24
Author(s): Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry Hardy
Software Mentions: 2
Published: almost 13 years ago

10.1186/2041-1480-2-S2-S4

An open annotation ontology for science on web 3.0
Cited by: 114
Author(s): Paolo Ciccarese, Marco Ocana, Leyla Jael Castro, Sudeshna Das, Tim W. Clark
Software Mentions: 2
Published: over 13 years ago

10.1186/2041-1480-4-S1-S5

Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data
Cited by: 19
Author(s): Leyla Jael Castro, Casey McLaughlin, Alexander García
Software Mentions: 2
Published: almost 12 years ago

10.12688/hrbopenres.12851.2

Data linkage in medical science using the resource description framework: the AVERT model
Cited by: 5
Author(s): Brian P. Reddy, Brett Houlding, Lucy Hederman, Mark Canney, Christophe Debruyne, Ciaran O'Brien, Alan Meehan, Declan O’Sullivan, Mark A. Little
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-9-S4-S6

RDFScape: Semantic Web meets Systems Biology
Cited by: 27
Author(s): Andrea Splendiani
Software Mentions: 2
Published: over 16 years ago

10.3390/healthcare9030322

An Efficient Agent Based Data Management Method of NoSQL Environments for Health Care Applications
Cited by: 1
Author(s): Theodore Kotsilieris
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2105-15-279

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases
Cited by: 24
Author(s): Dominik Schweiger, Zlatko Trajanoski, Stephan Pabinger
Software Mentions: 2
Published: over 10 years ago

10.3390/healthcare8040573

An Ontological Clinical Decision Support System Based on Clinical Guidelines for Diabetes Patients in Sri Lanka
Cited by: 8
Author(s): Sajith Madhusanka, Anusha Indika Walisadeera, Gilmini Dantanarayana, Jeevani S. Goonetillake, Athula Ginige
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13040-016-0102-8

Representing and querying disease networks using graph databases
Cited by: 72
Author(s): Artem Lysenko, Irina A. Roznovăţ, Mansoor Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-8-S3-S4

AlzPharm: integration of neurodegeneration data using RDF
Cited by: 39
Author(s): Hugo Y. K. Lam, Luis N. Marenco, Tim W. Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, George S. K. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei‐Hoi Cheung
Software Mentions: 2
Published: over 17 years ago

10.1093/gigascience/gix029

Calculating the quality of public high-throughput sequencing data to obtain a suitable subset for reanalysis from the Sequence Read Archive
Cited by: 9
Author(s): Toshio Ohta, Takeru Nakazato, Hidemasa Bono
Software Mentions: 2
Published: over 7 years ago

10.1186/s13073-019-0686-y

Text-mining clinically relevant cancer biomarkers for curation into the CIViC database
Cited by: 33
Author(s): Jake Lever, Martin Jones, Arpad Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J.M. Jones
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2105-11-S6-S15

Next generation models for storage and representation of microbial biological annotation
Cited by: 8
Author(s): Daniel J. Quest, Miriam Land, Thomas Brettin, Robert W. Cottingham
Software Mentions: 2
Published: about 14 years ago

10.1093/jamia/ocx160

SemEHR: A general-purpose semantic search system to surface semantic data from clinical notes for tailored care, trial recruitment, and clinical research*
Cited by: 88
Author(s): Honghan Wu, Giulia Toti, Katherine I. Morley, Zina Ibrahim, Amos Folarin, Roy Jackson, Ismail E. Kartoglu, Asha Agrawal, Clive Stringer, Darren Gale, Genevieve Gorrell, Angus Roberts, Matthew Broadbent, Robert Stewart, Richard Dobson
Software Mentions: 2
Published: almost 7 years ago

10.1186/gb-2009-10-5-r58

The Cell Cycle Ontology: An application ontology for the representation and integrated analysis of the cell cycle process
Cited by: 47
Author(s): Erick Antezana, Mikel Egaña, Ward Blondé, Aitzol Illarramendi, Iñaki Bilbao, Bernard De Baets, Robert Stevens, Vladimir Mironov, Martin Kuiper
Software Mentions: 2
Published: almost 16 years ago

10.3389/fpls.2016.00641

Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base
Cited by: 23
Author(s): Alejandro Rodríguez-Iglesias, Alejandro Rodríguez‐González, Alistair G. Irvine, Ane Sesma, Martin Urban, K. E. Hammond‐Kosack, Mark D. Wilkinson
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-10-S10-S2

Semantic web data warehousing for caGrid
Cited by: 38
Author(s): James P. McCusker, Joshua Phillips, Alejandra González Beltrán, Anthony Finkelstein, Michael Krauthammer
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0040946

Identifying Novel Drug Indications through Automated Reasoning
Cited by: 16
Author(s): Luis Tari, Nguyen Vo, Shanshan Liang, Jagruti Patel, Chitta Baral, James J. Cai
Software Mentions: 2
Published: over 12 years ago

10.3389/fninf.2013.00018

NeuroLex.org: an online framework for neuroscience knowledge
Cited by: 66
Author(s): Stephen Larson, Maryann E. Martone
Software Mentions: 2
Published: almost 12 years ago

10.1186/gb-2008-9-5-r89

Calling on a million minds for community annotation in WikiProteins
Cited by: 129
Author(s): Barend Mons, Michael Ashburner, Christine Chichester, Erik M. van Mulligen, Marc Weeber, Johan T. den Dunnen, Gert-Jan van Ommen, Mark A. Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel L. Packer, Roberto Carlos dos Santos Pacheco, Suzanna Lewis, Alfred R. Berkeley, William C. Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Jan Roes, Katy Börner, Amos Marc Bairoch
Software Mentions: 2
Published: almost 17 years ago

10.1186/s13073-014-0071-9

NGS-Logistics: federated analysis of NGS sequence variants across multiple locations
Cited by: 16
Author(s): Amin Ardeshirdavani, Erika Souche, Luc Dehaspe, Jeroen Van Houdt, Joris Robert Vermeesch, Yves Moreau
Software Mentions: 2
Published: about 10 years ago

10.1186/s40537-020-00383-w

Querying knowledge graphs in natural language
Cited by: 25
Author(s): Shiqi Liang, Kurt Stockinger, Tarcisio Mendes de Farias, Maria Anisimova, Manuel Gil
Software Mentions: 2
Published: almost 4 years ago

10.1186/2041-1480-5-11

Benchmarking infrastructure for mutation text mining
Cited by: 4
Author(s): Artjom Klein, Alexandre Riazanov, Matthew Hindle, Christopher J. O. Baker
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0017243

Finding Complex Biological Relationships in Recent PubMed Articles Using Bio-LDA
Cited by: 84
Author(s): Huijun Wang, Ying Ding, Jie Tang, Xiao Dong, Bing He, Judy Qiu, David Wild
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0116656

Ontology-Based Data Integration between Clinical and Research Systems
Cited by: 73
Author(s): Sebastian Mate, Felix Köpcke, Dennis Toddenroth, Marcus Martin, Hans‐Ulrich Prokosch, Thomas Bürkle, Thomas Ganslandt
Software Mentions: 2
Published: almost 10 years ago

10.3389/fdata.2021.644651

Enterprise Integration and Interoperability for Big Data-Driven Processes in the Frame of Industry 4.0
Cited by: 9
Author(s): Alexandros Bousdekis, Gregoris Mentzas
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-017-1979-z

Comparison, alignment, and synchronization of cell line information between CLO and EFO
Cited by: 4
Author(s): Edison Ong, Sirarat Sarntivijai, Simon Jupp, Helen Parkinson, Yongqun He
Software Mentions: 2
Published: almost 7 years ago

10.1186/1472-6947-13-57

Applying representational state transfer (REST) architecture to archetype-based electronic health record systems
Cited by: 30
Author(s): Erik Sundvall, Mikael Nyström, Daniel Karlsson, Martin Eneling, Rong Chen, Håkan Örman
Software Mentions: 2
Published: over 11 years ago

Projects: cran: SPARQL

Papers Mentioning SPARQL 660