Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SNFtool

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SNFtool

Similarity Network Fusion
6 versions
Latest release: over 3 years ago
3 dependent packages
365 downloads last month

Papers Mentioning SNFtool 9

A deep neural network approach to predicting clinical outcomes of neuroblastoma patients
Cited by: 14
Author(s): Léon-Charles Tranchevent, Francisco Azuaje, Jagath C. Rajapakse
Software Mentions: 10
Published: almost 5 years ago

10.7554/eLife.64090

Single-cell chromatin accessibility profiling of glioblastoma identifies an invasive cancer stem cell population associated with lower survival
Cited by: 44
Author(s): Paul Guilhamon, Charles Chesnelong, Michelle Kushida, Ana Nikolić, Divya Singhal, Graham MacLeod, Seyed Ali Madani Tonekaboni, Florence M.G. Cavalli, Christopher Arlidge, Nishani Rajakulendran, Naghmeh Rastegar, Xiaoguang Hao, Rozina Hassam, Laura J. Smith, Heather Whetstone, Fiona J. Coutinho, Bettina Nadorp, Katrina Ellestad, H. Artee Luchman, Jennifer A. Chan, Molly S. Shoichet, Michael D. Taylor, Benjamin Haibe‐Kains, Samuel Weiss, Stéphane Angers, Marco Gallo, Peter B. Dirks, Mathieu Lupien
Software Mentions: 7
Published: almost 4 years ago

10.1007/s00401-019-02020-0

Second-generation molecular subgrouping of medulloblastoma: an international meta-analysis of Group 3 and Group 4 subtypes
Cited by: 161
Author(s): Tanvi Sharma, Ed C. Schwalbe, Daniel Williamson, Martin Sill, Volker Hovestadt, Martin Mynarek, Stefan Rutkowski, Giles Robinson, Amar Gajjar, Florence M.G. Cavalli, Vijay Ramaswamy, Michael D. Taylor, Janet C. Lindsey, Rebecca Hill, Natalie Jäger, Andrey Korshunov, Debbie Hicks, Simon Bailey, Marcel Kool, Lukas Chávez, Paul A. Northcott, Stefan M. Pfister, Steven C. Clifford
Software Mentions: 6
Published: over 5 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 5 years ago

10.1186/s12920-016-0192-7

Integrative regression network for genomic association study
Cited by: 9
Author(s): Reddy Rani Vangimalla, Hyun-Hwan Jeong, Kyung-Ah Sohn
Software Mentions: 4
Published: over 8 years ago

10.3390/cancers13112528

Biomarker Identification through Multiomics Data Analysis of Prostate Cancer Prognostication Using a Deep Learning Model and Similarity Network Fusion
Cited by: 26
Author(s): Tzu Hao Wang, Cheng Yang Lee, Tzong-Yi Lee, Hsien Da Huang, Justin Bo Kai Hsu, Tzu Hao Chang
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pbio.2005143

Glucotypes reveal new patterns of glucose dysregulation
Cited by: 151
Author(s): Heather Hall, Dalia Perelman, Alessandra Breschi, Patricia Limcaoco, Ryan Kellogg, Tracey McLaughlin, M Snyder
Software Mentions: 2
Published: over 6 years ago

10.1172/jci.insight.141316

Childhood severe acute malnutrition is associated with metabolic changes in adulthood
Cited by: 8
Author(s): Debbie Thompson, Céline Bourdon, Paraskevi Massara, Michael S. Boyne, Terrence Forrester, Gerard Bryan Gonzales, Robert Bandsma
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12885-021-08359-6

Predicting breast cancer drug response using a multiple-layer cell line drug response network model
Cited by: 7
Author(s): Shujun Huang, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 1
Published: over 3 years ago