cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-14-S5-S3

Joint genotype inference with germline and somatic mutations
Cited by: 4
Author(s): Eric Bareke, Virginie Saillour, Jean-François Spinella, Ramón Vidal, Jasmine Healy, Daniel Sinnett, Miklós Csürös
Software Mentions: 1
Published: over 13 years ago

10.1002/mgg3.111

Taurodontism, variations in tooth number, and misshapened crowns inWnt10anull mice and human kindreds
Cited by: 79
Author(s): Jie Yang, Shih‐Kai Wang, Murim Choi, Brendan N. Reid, Yuanyuan Hu, Yuan Ling Lee, Curtis Herzog, Hera Kim‐Berman, Moses Lee, Paul J. Benke, Kevin C K Lloyd, James P. Simmer, Jan C.‐C. Hu
Software Mentions: 1
Published: almost 12 years ago

10.1002/mgg3.1238

Spinal muscular atrophy caused by a novel Alu ‐mediated deletion of exons 2a‐5 in SMN1 undetectable with routine genetic testing
Cited by: 6
Author(s): Ivana Jedličková, Anna Přistoupilová, Lenka Nosková, Filip Majer, Viktor Stránecký, Hana Hartmannová, Kateřina Hodaňová, Helena Trešlová, Michaela Hýblová, Peter Solár, Gabriel Minárik, Mária Giertlová, Stanislav Kmoch
Software Mentions: 1
Published: over 6 years ago

10.1002/mgg3.178

Fam83h null mice support a neomorphic mechanism for human <scp>ADHCAI</scp>
Cited by: 33
Author(s): Shih‐Kai Wang, Yuanyuan Hu, Jie Yang, Charles E. Smith, Amelia S. Richardson, Yasuo Yamakoshi, Yuan Ling Lee, Figen Seymen, Mine Koruyucu, Koray Gençay, Moses Lee, Murim Choi, Jung Wook Kim, Jan C.‐C. Hu, James P. Simmer
Software Mentions: 1
Published: almost 11 years ago

10.1007/s00438-013-0763-7

A genome-wide transcriptional profiling of sporulating Bacillus subtilis strain lacking PrpE protein phosphatase
Cited by: 0
Author(s): Adam Iwanicki, Krzysztof Hinc, Anna Ronowicz, Arkadiusz Piotrowski, Aleksandra Wołoszyk, Michał Obuchowski
Software Mentions: 1
Published: about 13 years ago

10.1186/s10020-021-00304-4

LRRC4 functions as a neuron-protective role in experimental autoimmune encephalomyelitis
Cited by: 9
Author(s): Yan Zhang, Di Li, Qingbei Zeng, Jianbo Feng, Haijuan Fu, Zhaohui Luo, Bo Xiao, Huan Yang, Minghua Wu
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2105-6-99

Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Cited by: 53
Author(s): Markus Wistrand, Erik L. L. Sonnhammer
Software Mentions: 1
Published: over 21 years ago

10.3892/mmr.2015.3583

Analysis of gene expression profiles associated with glioma progression
Cited by: 16
Author(s): Guozhang Hu, Bo Wei, Lina Wang, Le Wang, Daliang Kong, Ying Jin, Zhigang Sun
Software Mentions: 1
Published: over 11 years ago

10.3892/mmr.2015.3363

Screening for characteristic microRNAs between pre-invasive and invasive stages of cervical cancer
Cited by: 7
Author(s): Xiaolu Zhu, Shang‐Yun Wen, Zhihong Ai, Juan Wang, Yanli Xü, Yincheng Teng
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-12-381

Combined analysis of transcriptome and metabolite data reveals extensive differences between black and brown nearly-isogenic soybean (Glycine max) seed coats enabling the identification of pigment isogenes
Cited by: 39
Author(s): Nik Kovinich, Ammar Saleem, John T. Arnason, Brian Miki
Software Mentions: 1
Published: almost 15 years ago

10.1111/j.1365-2958.2012.08165.x

Mycobacterium tuberculosisWhiB4 regulates oxidative stress response to modulate survival and disseminationin vivo
Cited by: 80
Author(s): Manbeena Chawla, Pankti Parikh, Alka Saxena, MohamedHusen Munshi, Mayank R. Mehta, Deborah Mai, Anup Srivastava, K. Narasimhulu, Kevin Redding, Nimi Vashi, Dhiraj Kumar, Adrie J. C. Steyn, Amit Singh
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-019-44732-z

Climate change will decrease the range size of snake species under negligible protection in the Brazilian Atlantic Forest hotspot
Cited by: 33
Author(s): Ricardo Lourenço-de-Moraes, Fernando Miranda Lansac‐Tôha, Leilane Talita Fatoreto Schwind, Rodrigo Leite Arrieira, Rafael Rogério Rosa, Levi Carina Terribile, Priscila Lemes, Thiago F. Rangel, José Alexandre Felizola Diniz‐Filho, Rogério Pereira Bastos, Dayani Bailly
Software Mentions: 1
Published: about 7 years ago

10.1007/s12035-018-1036-6

Evaluation of Animal Models by Comparison with Human Late-Onset Alzheimer’s Disease
Cited by: 18
Author(s): Bu Yeo Kim, Hye Sun Lim, Yoonju Kim, Yu Jin Kim, Imhoi Koo, Soo Jin Jeong
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-45427-1

Network analysis of noncoding RNAs in pepper provides insights into fruit ripening control
Cited by: 28
Author(s): Jinhua Zuo, Yunxiang Wang, Beiwei Zhu, Yunbo Luo, Qing Wang, Lipu Gao
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-7-297

Impact of RNA structure on the prediction of donor and acceptor splice sites
Cited by: 19
Author(s): Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi
Software Mentions: 1
Published: about 20 years ago

10.1186/1471-2164-11-65

Tungsten carbide cobalt nanoparticles exert hypoxia-like effects on the gene expression level in human keratinocytes
Cited by: 41
Author(s): Wibke Busch, Dana Kühnel, Kristin Schirmer, Stefan Scholz
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-019-46365-8

A sweet orange mutant impaired in carotenoid biosynthesis and reduced ABA levels results in altered molecular responses along peel ripening
Cited by: 20
Author(s): Paco Romero, Marı́a T. Lafuente, María Jesús Rodrigo
Software Mentions: 1
Published: about 7 years ago

10.1002/1878-0261.12325

Molecular subtype classification of urothelial carcinoma in Lynch syndrome
Cited by: 27
Author(s): Christina Therkildsen, Pontus Eriksson, Mattias Höglund, Mats Jönsson, Gottfrid Sjödahl, Mef Nilbert, Fredrik Liedberg
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-8-281

Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis
Cited by: 174
Author(s): Yong‐Mei Bi, Rong-Lin Wang, Tong Zhu, Steven J. Rothstein
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-10-275

7TMRmine: a Web server for hierarchical mining of 7TMR proteins
Cited by: 21
Author(s): Guoquing Lu, Zhifang Wang, Alan M. Jones, Etsuko N. Moriyama
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2164-13-S8-S9

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data
Cited by: 6
Author(s): Yuan Yuan, Clift Norris, Yanxun Xu, Kam Wah Tsui, Yuan Ji, Han Liang
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms14011105

Identification of Recurrence Related microRNAs in Hepatocellular Carcinoma after Surgical Resection
Cited by: 22
Author(s): Zhen Yang, Ruoyu Miao, Guangbing Li, Yan Wu, Simon C. Robson, Xiaobo Yang, Yi Zhao, Haitao Zhao, Yang Zhong
Software Mentions: 1
Published: over 13 years ago

10.15252/msb.20199427

Programmable CRISPR‐Cas transcriptional activation in bacteria
Cited by: 46
Author(s): Hsing‐I Ho, Jennifer R. Fang, Jacky Cheung, Harris H. Wang
Software Mentions: 1
Published: about 6 years ago

10.1007/s00706-018-2203-1

Reliable calibration by nonlinear standard addition method in the presence of additive interference effects
Cited by: 8
Author(s): Marcin Wieczorek, Marek Dębosz, Paweł Świt, Aleksandra Piech, Joanna Kasperek, Paweł Kościelniak
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40462-015-0032-y

Analysis and visualisation of movement: an interdisciplinary review
Cited by: 119
Author(s): Urška Demšar, Kevin Buchin, Francesca Cagnacci, Kamran Safi, Bettina Speckmann, Nico Van de Weghe, Daniel Weiskopf, Robert Weibel
Software Mentions: 1
Published: over 11 years ago

10.1016/j.vaccine.2011.05.065

Pneumococcal conjugate vaccination at birth in a high-risk setting: No evidence for neonatal T-cell tolerance
Cited by: 24
Author(s): Anita H. J. van den Biggelaar, William Pomat, Anthony Bosco, Suparat Phuanukoonnon, Catherine J. Devitt, Marie A. Nadal-Sims, Peter Siba, Peter Richmond, Deborah Lehmann, Patrick G. Holt
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2164-14-589

Impact of microRNAs on regulatory networks and pathways in human colorectal carcinogenesis and development of metastasis
Cited by: 136
Author(s): Silvia Pizzini, Andrea Bisognin, Susanna Mandruzzato, M. Biasiolo, Arianna Facciolli, Lisa Perilli, Elisabetta Rossi, Giovanni Esposito, Massimo Rugge, Pierluigi Pilati, Simone Mocellin, Donato Nitti, Stefania Bortoluzzi, Paola Zanovello
Software Mentions: 1
Published: almost 13 years ago

10.3390/vaccines8020212

Investigating the Impact of Delivery System Design on the Efficacy of Self-Amplifying RNA Vaccines
Cited by: 28
Author(s): Giulia Anderluzzi, Gustavo Lou, Simona Gallorini, Michela Brazzoli, Russell Johnson, Derek T. O’Hagan, Barbara C. Baudner, Yvonne Perrie
Software Mentions: 1
Published: about 6 years ago

10.3390/vaccines8030495

Estimating the Fiscal Consequences of National Immunization Programs Using a “Government Perspective” Public Economic Framework
Cited by: 3
Author(s): Mark P. Connolly, Nikolaos Kotsopoulos
Software Mentions: 1
Published: almost 6 years ago

10.1111/vop.12597

Optical coherence tomography and molecular analysis of sudden acquired retinal degeneration syndrome ( <scp>SARDS</scp> ) eyes suggests the immune‐mediated nature of retinal damage
Cited by: 26
Author(s): Siniša D. Grozdanić, Tatjana Lazic, Helga Kecova, Kabhilan Mohan, Markus H. Kuehn
Software Mentions: 1
Published: almost 8 years ago

10.14202/vetworld.2016.1287-1293

Value added by Spirulina platensis in two different diets on growth performance, gut microbiota, and meat quality of Japanese quails
Cited by: 20
Author(s): Mohamed S. Yusuf, Marwa A. Hassan, Mohamed M. Abdel-Daim, Adel S. El Nabtiti, Amira Ahmed, Sherief A Moawed, Ahmed K. Elsayed, Hengmi Cui
Software Mentions: 1
Published: over 9 years ago

10.14202/vetworld.2017.880-887

Influence of microclimatic ammonia levels on productive performance of different broilers' breeds estimated with univariate and multivariate approaches
Cited by: 15
Author(s): Essam S. Soliman, Sherif A. Moawed, Rania Hassan
Software Mentions: 1
Published: almost 9 years ago

10.14202/vetworld.2018.259-267

Modeling the potential risk factors of bovine viral diarrhea prevalence in Egypt using univariable and multivariable logistic regression analyses
Cited by: 27
Author(s): Abdelfattah Selim, Mahmoud M. Elhaig, Sherif A. Moawed, E. M. El-Nahas
Software Mentions: 1
Published: over 8 years ago

10.14202/vetworld.2019.664-670

Isolation and molecular characterization of Mycoplasma spp. in sheep and goats in Egypt
Cited by: 8
Author(s): Mounier mohamed Abdel Halium, Fayez Awadalla Salib, Sherif Marouf, Emil saad Abdel Massieh
Software Mentions: 1
Published: about 7 years ago

10.1186/1743-422X-4-97

Comparative genomics of Bacillus thuringiensis phage 0305φ8-36: defining patterns of descent in a novel ancient phage lineage
Cited by: 25
Author(s): Stephen C. Hardies, Julie A. Thomas, Philip Serwer
Software Mentions: 1
Published: over 19 years ago

10.3390/ijms140611560

MicroRNA-Regulated Protein-Protein Interaction Networks and Their Functions in Breast Cancer
Cited by: 55
Author(s): Chia Hsien Lee, Wen-Hsing Kuo, Lin Chen, Yen Jen Oyang, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-019-47396-x

Early detection of unilateral ureteral obstruction by desorption electrospray ionization mass spectrometry
Cited by: 11
Author(s): Shibdas Banerjee, Anna Wong, Xingru Yan, Bo Wu, Hongjuan Zhao, Robert Tibshirani, Richard N. Zare, James D. Brooks
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-10-404

Streptococcus pneumoniae nasopharyngeal colonization induces type I interferons and interferon-induced gene expression
Cited by: 42
Author(s): Elizabeth A. Joyce, Stephen J. Popper, Stanley Falkow
Software Mentions: 1
Published: over 17 years ago

10.1186/1743-422X-10-164

A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid
Cited by: 32
Author(s): M. C. Herranz, Annette Niehl, Merlín Rosales, Nicola Fiore, Alan Zamorano, Antonio Granell, Vicente Pallás
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-019-48163-8

Wavelength-adaptable effective q-plates with passively tunable retardance
Cited by: 7
Author(s): B Radhakrishna, Gururaj Kadiri, G. Raghavan
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12985-019-1242-5

Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report
Cited by: 2
Author(s): Hany Soliman, Mohamed Abouelhoda, Mahmoud N. El Rouby, Ola Ahmed, Gamal Esmat, Zeinab K. Hassan, Mohammed M. Hafez, Dina A. Mehaney, Manojkumar Selvaraju, Rania K. Darwish, Yehia A. Osman, Abdel-Rahman N. Zekri
Software Mentions: 1
Published: over 6 years ago

10.1186/s12985-019-1274-x

Decay of infectious adenovirus and coliphages in freshwater habitats is differentially affected by ambient sunlight and the presence of indigenous protozoa communities
Cited by: 44
Author(s): Brian R. McMinn, Eric R. Rhodes, Emma M. Huff, Asja Korajkic
Software Mentions: 1
Published: over 6 years ago

10.1186/s12985-020-1280-z

Whole genome sequencing and genetic variations in several dengue virus type 1 strains from unusual dengue epidemic of 2017 in Vietnam
Cited by: 14
Author(s): Thuy Thi Dang, My Ha Pham, Huy Vu Bui, Duyet Van Le
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-11-354

Development of an oligo DNA microarray for the European sea bass and its application to expression profiling of jaw deformity
Cited by: 35
Author(s): Serena Ferraresso, Massimo Milan, Caterina Pellizzari, Nicola Vitulo, Richard Reinhardt, Adelino V.M. Canário, Tomaso Patarnello, Luca Bargelloni
Software Mentions: 1
Published: about 16 years ago

10.1093/ve/veab003

Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution
Cited by: 25
Author(s): Masashi Iwamoto, Yukino Shibata, Jun Kawasaki, Shohei Kojima, Yung‐Tsung Li, Shingo Iwami, Masamichi Muramatsu, Hui‐Lin Wu, Kazuhiro Wada, Keizō Tomonaga, Koichi Watashi, Masayuki Horie
Software Mentions: 1
Published: over 5 years ago

10.3390/v8010019

Complete Genome Sequence of Germline Chromosomally Integrated Human Herpesvirus 6A and Analyses Integration Sites Define a New Human Endogenous Virus with Potential to Reactivate as an Emerging Infection
Cited by: 43
Author(s): Joshua Tweedy, Maria A. Spyrou, Max Pearson, Dirk Laßner, Uwe Kühl, Ursula A. Gompels
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-7-399

Cancer diagnosis marker extraction for soft tissue sarcomas based on gene expression profiling data by using projective adaptive resonance theory (PART) filtering method
Cited by: 28
Author(s): Hiro Takahashi, Toru Nemoto, Teruhiko Yoshida, Hiroyuki Honda, Tadashi Hasegawa
Software Mentions: 1
Published: almost 20 years ago

10.3390/v10010040

CRISPR-Cas Targeting of Host Genes as an Antiviral Strategy
Cited by: 32
Author(s): Shuliang Chen, Xijie Yu, Deyin Guo
Software Mentions: 1
Published: over 8 years ago

10.3390/v10060313

The Odd “RB” Phage—Identification of Arabinosylation as a New Epigenetic Modification of DNA in T4-Like Phage RB69
Cited by: 16
Author(s): Julie A. Thomas, Jared Orwenyo, Lai-Xi Wang, Lindsay W. Black
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-15-346

Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars
Cited by: 29
Author(s): Jun‐ichi Yonemaru, Ritsuko Mizobuchi, Hiroshi Katô, Tetsuro Yamamoto, Eiji Yamamoto, Kazuki Matsubara, Hideyuki Hirabayashi, Yoshinobu Takeuchi, Hiroshi Tsunematsu, Takuro Ishii, Hiroto Ohta, Hideo Maeda, Kaworu Ebana, Masahiro Yano
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-019-50418-3

Targeted mutagenesis of the ryanodine receptor by Platinum TALENs causes slow swimming behaviour in Pacific bluefin tuna (Thunnus orientalis)
Cited by: 11
Author(s): Kentaro Higuchi, Yukinori Kazeto, Yuichi Ozaki, Toshiya Yamaguchi, Yukinori Shimada, Yoshiaki Ina, Satoshi Soma, Yoshitaka Sakakura, Ryoji Goto, Takahiro Matsubara, Issei Nishiki, Yoshiaki Iwasaki, Motoshige Yasuike, Yoji Nakamura, Aiko Matsuura, Shukei Masuma, Tetsushi Sakuma, Takashi Yamamoto, Tetsuji Masaoka, Takanori Kobayashi, Atushi Fujiwara, Gén Kobashi
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2105-15-S11-S10

SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data
Cited by: 7
Author(s): Yan Peng, Andrew S. Maxwell, Natalie D. Barker, Jennifer G. Laird, Alan J. Kennedy, Nan Wang, Chaoyang Zhang, Ping Gong
Software Mentions: 1
Published: almost 12 years ago

10.3390/v12060666

Dry Panels Supporting External Quality Assessment Programs for Next Generation Sequencing-Based HIV Drug Resistance Testing
Cited by: 6
Author(s): Marc Noguera-Julián, Emma R. Lee, Robert W. Shafer, Rami Kantor, Hezhao Ji
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-015-1277-y

Characterization of a novel RXR receptor in the salmon louse (Lepeophtheirus salmonis, Copepoda) regulating growth and female reproduction
Cited by: 17
Author(s): Christiane Eichner, Sussie Dalvin, Rasmus Skern‐Mauritzen, Ketil Malde, Heidi Kongshaug, Frank Nilsen
Software Mentions: 1
Published: over 11 years ago

10.3390/v13040620

Multiple Viral Infections Detected in Phytophthora condilina by Total and Small RNA Sequencing
Cited by: 17
Author(s): Leticia Botella, T. Jung
Software Mentions: 1
Published: over 5 years ago

10.3390/v13071288

Lentiviral Vectors for Delivery of Gene-Editing Systems Based on CRISPR/Cas: Current State and Perspectives
Cited by: 25
Author(s): Wendy Dong, Boris Kantor
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-10-292

Disorders of sex development expose transcriptional autonomy of genetic sex and androgen-programmed hormonal sex in human blood leukocytes
Cited by: 22
Author(s): Paul‐Martin Holterhus, Jan-Hendrik Bebermeier, Ralf Werner, János Demeter, Annette Richter‐Unruh, Gunnar Cario, Mahesh Appari, Reiner Siebert, Felix G. Riepe, James D. Brooks, Olaf Hiort
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-12-405

Transcriptional responses to glucose in Saccharomyces cerevisiae strains lacking a functional protein kinase A
Cited by: 23
Author(s): Daniela Livas, Marinka J. H. Almering, Jean‐Marc Daran, Jack T. Pronk, Juana M. Gancedo
Software Mentions: 1
Published: almost 15 years ago

10.1038/s41598-019-51418-z

Denoising of Aligned Genomic Data
Cited by: 6
Author(s): Irena Fischer-Hwang, Idoia Ochoa, Tsachy Weissman, Mikel Hernáez
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-15-273

SNP Discovery for mapping alien introgressions in wheat
Cited by: 78
Author(s): Vijay K. Tiwari, Shichen Wang, Sunish K. Sehgal, Jan Vrána, Bernd Friebe, Marie Kubaláková, Praveen Chhuneja, Jaroslav Doležel, Eduard Akhunov, Bhanu Kalia, Jamal S. M. Sabir, Bikram S. Gill
Software Mentions: 1
Published: over 12 years ago

10.3897/zookeys.67.704

Revision of the rove beetle genus Antimerus (Coleoptera, Staphylinidae, Staphylininae), a puzzling endemic Australian lineage of the tribe Staphylinini
Cited by: 7
Author(s): Alexey Solodovnikov, Alfred F. Newton
Software Mentions: 1
Published: over 15 years ago

10.3897/zookeys.100.1540

Belowground carabid beetle diversity in the western Palaearctic – effects of history and climate on range-restricted taxa (Coleoptera, Carabidae)
Cited by: 21
Author(s): Andreas Schuldt, Thorsten Aßmann
Software Mentions: 1
Published: about 15 years ago

10.3897/zookeys.147.2047

Carabidae diversity along an altitudinal gradient in a Peruvian cloud forest (Coleoptera)
Cited by: 47
Author(s): Sarah A. Maveety, Robert A. Browne, Terry L. Erwin
Software Mentions: 1
Published: over 14 years ago

10.3897/zookeys.172.1889

Review of Australasian spider flies (Diptera, Acroceridae) with a revision of Panops Lamarck
Cited by: 10
Author(s): Shaun L. Winterton
Software Mentions: 1
Published: over 14 years ago

10.3897/zookeys.365.5859

Reviewing population studies for forensic purposes: Dog mitochondrial DNA
Cited by: 9
Author(s): Sophie Verscheure, Thierry Backeljau, Stijn Desmyter
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-018-4636-7

Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423
Cited by: 24
Author(s): Hadrien Máté de Gérando, François Wasels, Angélique Bisson, Benjamin Clément, Frédérique Bidard, Etienne Jourdier, Ana M. López-Contreras, Nicolas Lopes Ferreira
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-9-187

Significance analysis of microarray for relative quantitation of LC/MS data in proteomics
Cited by: 56
Author(s): Bryan A. P. Roxas, Qingbo Li
Software Mentions: 1
Published: over 18 years ago

10.3390/ijms141020326

MicroRNA Expression Profiling of the Porcine Developing Hypothalamus and Pituitary Tissue
Cited by: 18
Author(s): Lifan Zhang, Zhaowei Cai, Song Wei, Huiyun Zhou, Hongmei Zhou, Xiaoling Jiang, N. Xu
Software Mentions: 1
Published: almost 13 years ago

10.1097/PR9.0000000000000944

The methyl donor S-adenosyl methionine reverses the DNA methylation signature of chronic neuropathic pain in mouse frontal cortex
Cited by: 6
Author(s): Lucas Topham, Stéphanie Grégoire, HyungMo Kang, Mali Salmon‐Divon, Elad Lax, Magali Millecamps, Moshe Szyf, Laura S. Stone
Software Mentions: 1
Published: about 5 years ago

10.1097/PR9.0000000000000620

Impact of patient information leaflets on pain medication intake behavior: a pilot study
Cited by: 13
Author(s): Julia Schmitz, Sandra Kamping, Janine Wiegratz, Maike Müller, Jan Stork, Luana Colloca, Herta Flor, Regine Klinger
Software Mentions: 1
Published: over 8 years ago

10.12669/pjms.37.4.3618

Treatment of Chronic Large and Persistent Macular Hole by a new technique in a Tertiary Care Hospital
Cited by: 3
Author(s): Tanweer Hasan Khan, Fawad Rizvi Syed, Asaad Mahmood Syed, Lubna Feroz
Software Mentions: 1
Published: about 5 years ago

10.12669/pjms.335.12990

Vitamin D supplementation improves FEV1 in patients of Bronchial Asthma
Cited by: 8
Author(s): Muhammad Zafar Majeed Babar, Mazhar Hussain, Sadia Majeed
Software Mentions: 1
Published: almost 9 years ago

10.1017/S0031182016001797

Rumen fluke (Calicophoron daubneyi) on Welsh farms: prevalence, risk factors and observations on co-infection withFasciola hepatica
Cited by: 44
Author(s): Rhys Aled Jones, Peter M. Brophy, Erik T. Mitchell, H. Williams
Software Mentions: 1
Published: over 9 years ago

10.1186/1756-3305-5-162

Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplus
Cited by: 22
Author(s): Andrew M. Heekin, Felix D. Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A. Brayton
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13071-015-0914-2

Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations
Cited by: 16
Author(s): Marcelo Ramalho-Ortigão, Iliano V. Coutinho-Abreu, Valdir Queiroz Balbino, Carlos Alberto Santiago Figueirêdo, Rami Mukbel, Hussan Dayem, Hanafi A. Hanafi, Shabaan S. El-Hossary, Emad El Din Y. Fawaz, Mahmoud N. Abo‐Shehada, David F. Hoel, Gwen Stayback, Mariha Wadsworth, Douglas A. Shoue, Jenica Abrudan, Neil F. Lobo, Andrew R. Mahon, Scott J. Emrich, Shaden Kamhawi, Frank H. Collins, Mary Ann McDowell
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-019-52090-z

Identification of key genes involved in the biosynthesis of triterpenic acids in the mint family
Cited by: 19
Author(s): Zahra Aminfar, Babak Rabiei, Masoud Tohidfar, Mohammad Hossein Mirjalili
Software Mentions: 1
Published: over 6 years ago

10.1186/s13071-018-2816-6

Molecular and morphological characterisation of Pharyngostrongylus kappa Mawson, 1965 (Nematoda: Strongylida) from Australian macropodid marsupials with the description of a new species, P. patriciae n. sp.
Cited by: 1
Author(s): Tanapan Sukee, Ian Beveridge, Abdul Jabbar
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-6-67

Cited by: 28
Author(s): Li Fu, Casey S Fu-Liu
Software Mentions: 1
Published: over 21 years ago

10.1186/s13071-016-1544-z

The persistence and ecological impacts of a cyanobacterium genetically engineered to express mosquitocidal Bacillus thuringiensis toxins
Cited by: 0
Author(s): Irene Ketseoglou, Gustav Bouwer
Software Mentions: 1
Published: about 10 years ago

10.1186/s13071-019-3578-5

Redescription and molecular characterisation of the fish ectoparasite Anilocra capensis Leach, 1818 (Isopoda: Cymothoidae), with description of six new species of Anilocra Leach, 1818 from Africa
Cited by: 13
Author(s): Rachel L. Welicky, Nico J. Smit
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-53371-3

Continuation of tropical Pacific Ocean temperature trend may weaken extreme El Niño and its linkage to the Southern Annular Mode
Cited by: 21
Author(s): Eun‐Pa Lim, Harry H. Hendon, Pandora Hope, Christine Chung, François Delage, Michael J. McPhaden
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-3305-6-276

The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis
Cited by: 24
Author(s): Andrew M. Heekin, Felix D. Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Scot E. Dowd, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A. Brayton
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-15-180

Whole genome sequencing of the black grouse (Tetrao tetrix): reference guided assembly suggests faster-Z and MHC evolution
Cited by: 38
Author(s): Biao Wang, Robert Ekblom, Ignas Bunikis, Heli Siitari, Jacob Höglund
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-019-53639-8

Appetitive and aversive motivation in depression: The temporal dynamics of task-elicited asymmetries in alpha oscillations
Cited by: 17
Author(s): Simone MesserottiÂ Benvenuti, Giulia Buodo, Rocco Mennella, Elisa Dal Bò, Daniela Palomba
Software Mentions: 1
Published: over 6 years ago

10.1080/20010001.2018.1516072

Evaluation of aging, diabetes mellitus, and skin wounds by scanning acoustic microscopy with protease digestion
Cited by: 5
Author(s): Katsutoshi Miura, Kensuke Yamashita
Software Mentions: 1
Published: over 8 years ago

10.20411/pai.v6i2.461

Lack of Atorvastatin Effect on Monocyte Gene Expression and Inflammatory Markers in HIV-1- infected ART-suppressed Individuals at Risk of non-AIDS Comorbidities
Cited by: 1
Author(s): Anjana Yadav, Andrew V. Kossenkov, Louise C. Showe, Sarah J. Ratcliffe, Grace Choi, Luis J. Montaner, Pablo Tebas, Pamela A. Shaw, Ronald G. Collman
Software Mentions: 1
Published: almost 5 years ago

10.1007/s12253-020-00865-5

Metabolic Parameters as Predictors for Progression Free and Overall Survival of Patients with Metastatic Colorectal Cancer
Cited by: 6
Author(s): Zsuzsanna Németh, W. Wijker, Zsolt Lengyel, Erika Hitre, Katalin Borbély
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.49

A new 12-gene diagnostic biomarker signature of melanoma revealed by integrated microarray analysis
Cited by: 55
Author(s): Wanting Liu, Yonghong Peng, Desmond J. Tobin
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-14-315

Exploring the larval transcriptome of the common sole (Solea solea L.)
Cited by: 42
Author(s): Serena Ferraresso, Alessio Bonaldo, Luca Parma, Stefano Cinotti, Paola Massi, Luca Bargelloni, Pier Paolo Gatta
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-13-500

Accurate variant detection across non-amplified and whole genome amplified DNA using targeted next generation sequencing
Cited by: 22
Author(s): Abdou ElSharawy, Jason Warner, Jeff Olson, Michael Förster, Markus B. Schilhabel, Darren R. Link, Stefan Rose-John, Stefan Schreiber, Philip Rosenstiel, James Brayer, André Franke
Software Mentions: 1
Published: almost 14 years ago

10.7717/peerj.788

Loss of CITED1, an MITF regulator, drives a phenotype switchin vitroand can predict clinical outcome in primary melanoma tumours
Cited by: 19
Author(s): Jill Howlin, Helena Cirenajwis, Barbara Lettiero, Johan Staaf, Martin Lauss, Lao H. Saal, Åke Borg, Sofia K. Gruvberger-Saal, Göran Jönsson
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-8-87

Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Cited by: 40
Author(s): Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M. Ismail, Jin Xu, Xinping Cui, Timothy J. Close
Software Mentions: 1
Published: over 19 years ago

10.7717/peerj.9338

URMAP, an ultra-fast read mapper
Cited by: 7
Author(s): Robert C. Edgar
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-021-07772-2

A two-way rectification method for identifying differentially expressed genes by maximizing the co-function relationship
Cited by: 0
Author(s): Bolin Chen, Li Gao, Xuequn Shang
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2105-9-231

Automating dChip: toward reproducible sharing of microarray data analysis
Cited by: 61
Author(s): Cheng Li
Software Mentions: 1
Published: about 18 years ago

10.1038/s41598-019-54444-z

Determinants of Brain Rhythm Burst Statistics
Cited by: 26
Author(s): Arthur S. Powanwe, André Longtin
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8349

Multiple genome pattern analysis and signature gene identification for the Caucasian lung adenocarcinoma patients with different tobacco exposure patterns
Cited by: 1
Author(s): Yanmei Dong, Li-da Qin, Yifan Tong, Qian He, Ling Wang, Kai Song
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55084-z

A novel panel of differentially-expressed microRNAs in breast cancer brain metastasis may predict patient survival
Cited by: 13
Author(s): Athina Giannoudis, Kim Clarke, Rasheed Zakaria, Damir Varešlija, Mosavar Farahani, Lucille Rainbow, Angela Platt-Higgins, Stuart Ruthven, Katherine A. Brougham, Philip S. Rudland, Michael D. Jenkinson, Leonie S. Young, Francesco Falciani, Carlo Palmieri
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-13-S2-S4

Haplotype and minimum-chimerism consensus determination using short sequence data
Cited by: 19
Author(s): Shawn T. O’Neil, Scott J. Emrich
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-019-55057-2

Interaction between androgen receptor and coregulator SLIRP is regulated by Ack1 tyrosine kinase and androgen
Cited by: 6
Author(s): Dinuka De Silva, Zhentao Zhang, Yuanbo Liu, Joel S. Parker, Chenxi Xu, Ling Cai, Gang Greg Wang, H. Shelton Earp, Young E. Whang
Software Mentions: 1
Published: over 6 years ago

Projects: cran: SAM

Science Score: 85/100

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Penalties:

Papers Mentioning SAM 4,566