cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-15-S9-S12

ARYANA: Aligning Reads by Yet Another Approach
Cited by: 0
Author(s): Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12881-018-0580-2

Case report of familial sudden cardiac death caused by a DSG2 p.F531C mutation as genetic background when carrying with heterozygous KCNE5 p.D92E/E93X mutation
Cited by: 8
Author(s): Yenn‐Jiang Lin, Jiana Huang, Siqi He, Ruiling Feng, Zhian Zhong, Yang Liu, Weitao Ye, Xin Li, Hongtao Liao, Hongwen Fei, Fang Rao, Zhi‐Xin Shan, Chunyu Deng, Xianzhang Zhan, Yumei Xue, Hui Liu, Bin Zhang, Kejian Wang, Qianhuan Zhang, Shulin Wu, Xiufang Lin
Software Mentions: 1
Published: almost 8 years ago

10.1093/bioinformatics/bts456

YAHA: fast and flexible long-read alignment with optimal breakpoint detection
Cited by: 63
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: almost 14 years ago

10.1186/1741-7015-7-9

A compact VEGF signature associated with distant metastases and poor outcomes
Cited by: 156
Author(s): Zhiyuan Hu, Cheng Fan, Chad Livasy, Xiaping He, Daniel S. Oh, Matthew G. Ewend, Lisa A. Carey, Subbaya Subramanian, Robert B. West, Francis Ikpatt, Olufunmilayo I. Olopade, Matt van de Rijn, Charles M. Perou
Software Mentions: 1
Published: about 17 years ago

10.1007/s00422-013-0574-2

Revealing instances of coordination among multiple cortical areas
Cited by: 10
Author(s): Moshe Abeles
Software Mentions: 1
Published: over 12 years ago

10.18632/aging.101253

Identification of an 88-microRNA signature in whole blood for diagnosis of hepatocellular carcinoma and other chronic liver diseases
Cited by: 17
Author(s): Xiao Ran Long, Yaojun Zhang, Mei Yin Zhang, Keng Chen, Xi Zheng, Hui Yun Wang
Software Mentions: 1
Published: almost 9 years ago

10.1186/1745-6150-6-50

Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome
Cited by: 46
Author(s): Manfredo J. Seufferheld, Kyung Mo Kim, James B. Whitfield, Alejandro A. Valerio, Gustavo Caetano‐Anollés
Software Mentions: 1
Published: over 15 years ago

10.1186/1741-7015-9-2

Differential endothelial cell gene expression by African Americans versusCaucasian Americans: a possible contribution to health disparity in vascular disease and cancer
Cited by: 34
Author(s): Peng Wei, Liming Milbauer, Judy Enenstein, Julia Nguyen, Wei Pan, Robert P. Hebbel
Software Mentions: 1
Published: over 15 years ago

10.1186/1741-7015-8-1

IGF-I induced genes in stromal fibroblasts predict the clinical outcome of breast and lung cancer patients
Cited by: 69
Author(s): Michal Rajski, Rosanna Zanetti-Dällenbach, Brigitte Vogel, Richard Herrmann, Christoph Rochlitz, Martin Buess
Software Mentions: 1
Published: over 16 years ago

10.1186/s12916-016-0671-x

Risk factors for hospital re-presentation among older adults following fragility fractures: a systematic review and meta-analysis
Cited by: 16
Author(s): Saira Mathew, Elise Gane, Kristiann C. Heesch, Steven McPhail
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-21836-6

Onset and Evolution of Southern Annular Mode-Like Changes at Centennial Timescale
Cited by: 79
Author(s): Patricio I. Moreno, Isabel Vilanova, Rodrigo Villa-Martínez, Robert B. Dunbar, David A. Mucciarone, Michael R. Kaplan, René D. Garreaud, Maisa Rojas, Christopher Moy, Ricardo De Pol‐Holz, Fabrice Lambert
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-22292-y

Identification of genomic differences among peripheral arterial beds in atherosclerotic and healthy arteries
Cited by: 61
Author(s): Marja Steenman, O. Espitia, Blandine Maurel, Béatrice Guyomarch, Marie-Françoise Heymann, M.‐A. Pistorius, Benjamin Ory, Dominique Heymann, Rémi Houlgatte, Yann Gouëffic, Thibaut Quillard
Software Mentions: 1
Published: over 8 years ago

10.1186/s40659-019-0216-9

Intestinal transcriptional profiling reveals fava bean-induced immune response in DBA/1 mice
Cited by: 1
Author(s): Guankui Du, Mochao Xiao, Quangang Zhu, Chen Zhou, Ao Wang, Wei Cai
Software Mentions: 1
Published: over 7 years ago

10.1186/s12879-017-2899-2

Examining the online approaches used by hospitals in Sydney, Australia to inform patients about healthcare associated infections and infection prevention strategies
Cited by: 8
Author(s): J. Park, Holly Seale
Software Mentions: 1
Published: over 8 years ago

10.3390/biology1010005

Biomarker Gene Signature Discovery Integrating Network Knowledge
Cited by: 27
Author(s): Yupeng Cun, Holger Fröhlich
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-018-21889-7

Global Gene Expression Analysis in an in vitro Fibroblast Model of Idiopathic Pulmonary Fibrosis Reveals Potential Role for CXCL14/CXCR4
Cited by: 26
Author(s): L. Raposo Rodríguez, Margaret C. Emblom-Callahan, Mantej K. Chhina, Sarah Bui, Bilal Aljeburry, Luc H. Tran, Rebecca Novak, M. Lemma, Steven D. Nathan, Geraldine M. Grant
Software Mentions: 1
Published: about 8 years ago

10.3390/biology10070578

Influence of Varying Dietary ω6 to ω3 Fatty Acid Ratios on the Hepatic Transcriptome, and Association with Phenotypic Traits (Growth, Somatic Indices, and Tissue Lipid Composition), in Atlantic Salmon (Salmo salar)
Cited by: 2
Author(s): Tomer Katan, Xi Xue, Albert Caballero‐Solares, Richard G. Taylor, Christopher C. Parrish, Matthew L. Rise
Software Mentions: 1
Published: almost 5 years ago

10.3390/biology6010014

MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data
Cited by: 2
Author(s): Christopher Noune, Caroline Hauxwell
Software Mentions: 1
Published: over 9 years ago

10.1186/s40364-021-00303-x

LncRNAs serve as novel biomarkers for diagnosis and prognosis of childhood ALL
Cited by: 9
Author(s): Xuanmei Huang, Libin Huang, Qing Xie, Ling Zhang, Shaohui Huang, Mingye Hong, Jiangbin Li, Zunnan Huang, Hua Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12938-021-00930-3

Extended classifier system with continuous real-coded variables for feature extraction of instantaneous pulse-rate variability and respiration of individuals with gaming disorder
Cited by: 1
Author(s): Hung Ming, Tzu Chien Hsiao
Software Mentions: 1
Published: over 4 years ago

10.1186/s12938-021-00882-8

Event-related EEG oscillatory responses elicited by dynamic facial expression
Cited by: 1
Author(s): Tuba Aktürk, Tom A. de Graaf, Yasemin Abra, Sevilay Şahoğlu-Göktaş, Dilek Özkan, Aysun Kula, Bahar Güntekin
Software Mentions: 1
Published: about 5 years ago

10.1186/1475-925X-13-81

The influence of emotion on keyboard typing: an experimental study using visual stimuli
Cited by: 12
Author(s): Po-Ming Lee, Wei-Hsuan Tsui, Tzu‐Chien Hsiao
Software Mentions: 1
Published: almost 12 years ago

10.1186/1475-925X-3-34

Review and standardization of cell phone exposure calculations using the SAM phantom and anatomically correct head models
Cited by: 24
Author(s): Brian B. Beard, Wolfgang Kainz
Software Mentions: 1
Published: over 21 years ago

10.1186/s12938-021-00848-w

Attention-based multi-scale features fusion for unobtrusive atrial fibrillation detection using ballistocardiogram signal
Cited by: 7
Author(s): Fangfang Jiang, Chuhang Hong, Tianqing Cheng, Haoqian Wang, Bowen Xu, Biyong Zhang
Software Mentions: 1
Published: over 5 years ago

10.2349/biij.3.1.e25

Using magnetoencephalography to investigate brain activity during high frequency deep brain stimulation in a cluster headache patient
Cited by: 18
Author(s): NJ Ray, Morten L. Kringelbach, Ned Jenkinson, Owen Slf., Paul Davies, S Wang, Nick de Pennington, PC Hansen, John Stein, TZ Aziz
Software Mentions: 1
Published: over 19 years ago

10.1155/2015/492395

Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes
Cited by: 31
Author(s): Madeeha Aqil, Saurav Mallik, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Shahid Jameel
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2334-10-88

Parvovirus B19 infection and severe anaemia in Kenyan children: a retrospective case control study
Cited by: 25
Author(s): James Wildig, Yvonne E. Cossart, Norbert Peshu, Nimmo Gicheru, James Tuju, Thomas N. Williams, Charles R. Newton
Software Mentions: 1
Published: about 16 years ago

10.1155/2018/8475463

Siji Antiviral Mixture Protects against CA16 Induced Brain Injury through Inhibiting PERK/STAT3/NF-κB Pathway
Cited by: 1
Author(s): Huimin Xiao, Ruiyang Zhao, Yue He, Yang Liu, Qin He, Siwang Wang, Fei Chen
Software Mentions: 1
Published: almost 8 years ago

10.1155/2020/8595473

Contributions of Gene Modules Regulated by Essential Noncoding RNA in Colon Adenocarcinoma Progression
Cited by: 0
Author(s): Chunhua Li, Xihe Yu, Jianping Lu, Lei Zheng, Dahua Xu, Zelong Xu, Liqiang Wang, Ying Cui, Yeshuang Li, Hong Wang, Jiankai Xu, Kongning Li
Software Mentions: 1
Published: about 6 years ago

10.1155/2013/317926

Profiling of Hepatocellular Carcinoma Cell Cycle Regulating Genes Targeted by Calycosin
Cited by: 14
Author(s): Dongqing Zhang, Shufang Wang, Li Zhu, Yao Tian, Haibao Wang, Yuan Zhuang, Yu Li, Deqing Wang
Software Mentions: 1
Published: over 13 years ago

10.1155/2015/625192

Age-Specific Gene Expression Profiles of Rhesus Monkey Ovaries Detected by Microarray Analysis
Cited by: 8
Author(s): Hengxi Wei, Xiangjie Liu, Jihong Yuan, Li Li, Dongdong Zhang, Xiaolong Guo, Lin Liu, Shouquan Zhang
Software Mentions: 1
Published: over 11 years ago

10.1155/2015/949624

Transcriptional Changes Associated with Long-Term Left Ventricle Volume Overload in Rats: Impact on Enzymes Related to Myocardial Energy Metabolism
Cited by: 9
Author(s): Élise Roussel, Marie‐Claude Drolet, Élisabeth Walsh-Wilkinson, Wahiba Dhahri, Dominic Lachance, Suzanne Gascon, Otman Sarrhini, Jacques Rousseau, Roger Lecomte, Jacques Couët, Marie Arsenault
Software Mentions: 1
Published: over 11 years ago

10.1155/2019/3843295

Breast Tumor Detection and Classification Using Intravoxel Incoherent Motion Hyperspectral Imaging Techniques
Cited by: 6
Author(s): Si-Wa Chan, Yung-Chieh Chang, Po-Chiun Huang, Yen-Chieh Ouyang, Yu-Tzu Chang, Ruey-Feng Chang, Jyh‐Wen Chai, Clayton Chi‐Chang Chen, Hsian‐Min Chen, Chein‐I Chang, Chia-Chieh Lin
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.44736

Scc2 counteracts a Wapl-independent mechanism that releases cohesin from chromosomes during G1
Cited by: 28
Author(s): Manoj Srinivasan, Naomi J Petela, Johanna C. Scheinost, James E. Collier, Menelaos Voulgaris, Maurici B. Roig, Frédéric Beckouët, Bin Hu, Kim Nasmyth
Software Mentions: 1
Published: almost 7 years ago

10.1155/2014/543673

Complex Network-Driven View of Genomic Mechanisms Underlying Parkinson’s Disease: Analyses in Dorsal Motor Vagal Nucleus, Locus Coeruleus, and Substantia Nigra
Cited by: 22
Author(s): Beatriz Raposo Corradini, Priscila Iamashita, Edilaine Tampellini, José Marcelo Farfel, Lea T. Grinberg, Carlos Alberto Moreira-Filho
Software Mentions: 1
Published: over 12 years ago

10.1155/2018/5895628

Global, Survival, and Apoptotic Transcriptome during Mouse and Human Early Embryonic Development
Cited by: 9
Author(s): D. Haouzi, I. Boumela, Karim Chébli, S. Hamamah
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/561819

Targeted Next-Generation Sequencing Reveals Hot Spots and Doubly Heterozygous Mutations in Chinese Patients with Familial Cardiomyopathy
Cited by: 9
Author(s): Yue Zhao, Yue Feng, Yunmei Zhang, Xiaoqing Ding, Yuzhu Song, A-Mei Zhang, Li Liu, Hong Zhang, Jindong Ding, Xueshan Xia
Software Mentions: 1
Published: over 11 years ago

10.1155/2017/6423021

Bioinformatics Genes and Pathway Analysis for Chronic Neuropathic Pain after Spinal Cord Injury
Cited by: 36
Author(s): Guan Zhang, Ping Yang
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2334-13-257

Microarray analysis of MicroRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1)
Cited by: 63
Author(s): Hongjiang Song, Qi Wang, Yang Guo, Shunai Liu, Rui Song, Xuesong Gao, Dai Li, Baoshun Li, Deli Zhang, Jun Cheng
Software Mentions: 1
Published: about 13 years ago

10.1155/2016/6125204

Structural and Histochemical Alterations in the Aortic Valves of Elderly Patients: A Comparative Study of Aortic Stenosis, Aortic Regurgitation, and Normal Valves
Cited by: 19
Author(s): Katsutoshi Miura, Hideki Katoh
Software Mentions: 1
Published: over 10 years ago

10.1155/2014/171487

Alteration of Interictal Brain Activity in Patients with Temporal Lobe Epilepsy in the Left Dominant Hemisphere: A Resting-State MEG Study
Cited by: 4
Author(s): Haitao Zhu, Jing Zhu, Tiezhu Zhao, Yong Wu, Hongyi Liu, Ting Wu, Lu Yang, Yuanjie Zou, Rui Zhang, Gang Zheng
Software Mentions: 1
Published: over 12 years ago

10.1155/2014/527029

Survey of Network-Based Approaches to Research of Cardiovascular Diseases
Cited by: 8
Author(s): Anida Sarajlić, Nataša Pržulj
Software Mentions: 1
Published: over 12 years ago

10.1155/2014/850802

ECR-MAPK Regulation in Liver Early Development
Cited by: 4
Author(s): Xiu-Ju Zhao, Hexian Zhuo
Software Mentions: 1
Published: over 12 years ago

10.1155/2013/354582

Comparative Gene Expression Profiling in Human Cumulus Cells according to Ovarian Gonadotropin Treatments
Cited by: 33
Author(s): Saïd Assou, D. Haouzi, H. Déchaud, Anna Gala, A. Ferrières, S. Hamamah
Software Mentions: 1
Published: over 13 years ago

10.1155/2014/651751

Microarray-Based RNA Profiling of Breast Cancer: Batch Effect Removal Improves Cross-Platform Consistency
Cited by: 19
Author(s): Martin Jakob Larsen, Mads Thomassen, Qihua Tan, Kristina Pilekær Sørensen, Torben A. Kruse
Software Mentions: 1
Published: over 12 years ago

10.1186/s12865-020-00373-w

Reduced polyfunctional T cells and increased cellular activation markers in adult allergy patients reporting adverse reactions to food
Cited by: 3
Author(s): Friederike Sonnet, Ellen Namork, Eva Stylianou, Ingvild Gaare-Olstad, Kanutte Huse, Sandra Andorf, Siri Mjaaland, Hubert Dirven, Unni Cecilie Nygaard
Software Mentions: 1
Published: almost 6 years ago

10.1155/2014/951937

Endometrial Receptivity Profile in Patients with Premature Progesterone Elevation on the Day of hCG Administration
Cited by: 46
Author(s): D. Haouzi, Laurence Bissonnette, Anna Gala, Saïd Assou, Frida Entezami, Hélène Perrochia, H. Déchaud, Jean‐Noël Hugues, S. Hamamah
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2172-9-5

Intragraft gene expression profile associated with the induction of tolerance
Cited by: 6
Author(s): Tomoko Doki, Michael J. Mello, Dennis Mock, Jacqueline M. Evans, Mary Kearns‐Jonker
Software Mentions: 1
Published: over 18 years ago

10.1155/2013/317912

Development of Pineapple Microsatellite Markers and Germplasm Genetic Diversity Analysis
Cited by: 13
Author(s): Shuo Feng, Tong HeLin, Chun‐Xiang You, Jingyi Wang, Yeyuan Chen, Guangming Sun, Jun He, Yan Wu
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2172-5-20

Cited by: 55
Author(s): Yulei Shen, Javeed Iqbal, Li Xiao, Ryan C. Lynch, Andreas Rosenwald, Louis M. Staudt, Simon Sherman, Karen Dybkær, Guimei Zhou, James D. Eudy, Jan Delabie, Timothy W. McKeithan, Wing C. Chan
Software Mentions: 1
Published: over 22 years ago

10.1155/2014/536591

Computational Analysis of mRNA Expression Profiles Identifies theITGFamily andPIK3R3as Crucial Genes for Regulating Triple Negative Breast Cancer Cell Migration
Cited by: 13
Author(s): Sukhontip Klahan, Mei-Shin Wu, Edward Hsi, Chi‐Cheng Huang, Ming‐Feng Hou, Wei Chiao Chang
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-018-23325-2

Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms
Cited by: 17
Author(s): Dayang Chen, Hefu Zhen, Yong Qiu, Ping Liu, Peng Zeng, Jun Xia, Qianyu Shi, Lin Xie, Zhu Zhu, Ya Gao, Guodong Huang, Jian Wang, Huanming Yang, Fang Chen
Software Mentions: 1
Published: about 8 years ago

10.1155/2016/8208904

Expression of Migration-Related Genes in Human Colorectal Cancer and Activity of a Disintegrin and Metalloproteinase 17
Cited by: 19
Author(s): Katarzyna Walkiewicz, Paweł Kozieł, Martyna Bednarczyk, Adam Błażelonis, Urszula Mazurek, Małgorzata Muc-Wierzgoń
Software Mentions: 1
Published: over 10 years ago

10.1155/2014/138410

msiDBN: A Method of Identifying Critical Proteins in Dynamic PPI Networks
Cited by: 4
Author(s): Yuan Zhang, Nan Du, Kang Li, Jinchao Feng, Kebin Jia, Aidong Zhang
Software Mentions: 1
Published: over 12 years ago

10.7603/s40681-014-0010-5

Coronary artery aneurysms occurrence risk analysis between Kawasaki disease and LRP1B gene in Taiwanese children
Cited by: 8
Author(s): Ying Lin, Xiang Liu, Jen‐Ping Chang, Wen Kuei Chien, Jin Hua Chen, Hsinyi Tsang, Chien Hui Hung, Ting Hsu Lin, Shaohui Huang, Chien-Chang Liao, Cheng Wen Lin, Tsung Jung Ho, Fuu Jen Tsai
Software Mentions: 1
Published: about 12 years ago

10.3390/biomedicines9091258

Master Regulators of Epithelial-Mesenchymal Transition and WNT Signaling Pathways in Juvenile Nasopharyngeal Angiofibromas
Cited by: 2
Author(s): Naiade Calanca, Sara Martoreli Silveira Binato, Sabrina Daniela da Silva, Helena Brentani, Luiz Ubirajara Sennes, Clóvis Antônio Lopes Pinto, Maria Aparecida Custódio Domingues, Carlos Eduardo Fonseca-Alves, Cláudia Aparecida Rainho, Sílvia Regina Rogatto
Software Mentions: 1
Published: over 4 years ago

10.1186/2052-1839-14-7

Combined meta-analysis of systemic effects of allogeneic stem cell transplantation and systemic sclerosis
Cited by: 3
Author(s): Dmitry N. Grigoryev, Jignesh Dalal, Mara L. Becker, Shui Q. Ye
Software Mentions: 1
Published: about 12 years ago

10.1186/1472-6963-6-95

Development and testing of innovative patient resources for the management of coronary heart disease (CHD): a descriptive study
Cited by: 24
Author(s): Julie Redfern, Elizabeth Ellis, Tom Briffa, Ben Freedman
Software Mentions: 1
Published: over 19 years ago

10.1523/ENEURO.0531-19.2020

The Neural Dynamics of Individual Differences in Episodic Autobiographical Memory
Cited by: 10
Author(s): Raluca Petrican, Daniela J. Palombo, Signy Sheldon, Brian Levine
Software Mentions: 1
Published: over 6 years ago

10.1186/s12877-020-01535-6

“Study protocol for the ≥65 years NOrthern jutland Cohort of Fall risk Assessment with Objective measurements (the NOCfao study)”
Cited by: 1
Author(s): Morten Villumsen, Bo Grarup, Steffan Wittrup Christensen, Thorvaldur Skuli Palsson, Rogério Pessoto Hirata
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-7-99

Determination of strongly overlapping signaling activity from microarray data
Cited by: 26
Author(s): Ghislain Bidaut, Karsten Suhre, Jean‐Michel Claverie, Michael F. Ochs
Software Mentions: 1
Published: over 20 years ago

10.3390/biom6040042

CoverageAnalyzer (CAn): A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles
Cited by: 16
Author(s): Ralf Hauenschild, Stephan Werner, Lyudmil Tserovski, Andreas Hildebrandt, Yuri Motorin, Mark Helm
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-23726-3

Insensitivity to atorvastatin is associated with increased accumulation of intracellular lipid droplets and fatty acid metabolism in breast cancer cells
Cited by: 23
Author(s): Barbara Lettiero, Maria Inasu, Siker Kimbung, Signe Borgquist
Software Mentions: 1
Published: about 8 years ago

10.3390/biom7010003

DNA Methylation Targeting: The DNMT/HMT Crosstalk Challenge
Cited by: 93
Author(s): Omar Castillo-Aguilera, Patrick Depreux, Ludovic Halby, Paola B. Arimondo, Laurence Goossens
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-9-344

Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803
Cited by: 69
Author(s): Zhigang Zhang, Ninad D Pendse, Katherine N. Phillips, James B. Cotner, Arkady B. Khodursky
Software Mentions: 1
Published: almost 18 years ago

10.1042/BSR20181016

The effect of HMGB1 on the clinicopathological and prognostic features of cervical cancer
Cited by: 12
Author(s): Li Pan, Meng-Fei Xu, Hongwei Cai, Niresh Thapa, Cancan He, Zhen Song
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-16-S18-S5

Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data
Cited by: 7
Author(s): Kouichi Kimura, Atsushi Koike
Software Mentions: 1
Published: over 10 years ago

10.3390/bios10110162

Carbon-Based Quantum Dots for Electrochemical Detection of Monoamine Neurotransmitters—Review
Cited by: 15
Author(s): Saheed E. Elugoke, Abolanle S. Adekunle, Omolola E. Fayemi, Bhekie B. Mamba, El‐Sayed M. Sherif, Eno E. Ebenso
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-07222-5

Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition
Cited by: 3
Author(s): Hemant Gupta, Khyati Chandratre, Siddharth Sinha, Teng Huang, Xiaobing Wu, Jian Cui, Michael Q. Zhang, San Ming Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-383

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells
Cited by: 19
Author(s): Sheila Z. Kimaro Mlacha, Sandra Romero-Steiner, Julie C. Dunning Hotopp, Nikhil Kumar, Nadeeza Ishmael, David R. Riley, Umar Farooq, Todd Creasy, Luke J. Tallon, Xinyue Liu, Cynthia S. Goldsmith, Jacquelyn S. Sampson, George M. Carlone, Susan K. Hollingshead, J. Anthony G. Scott, Hervé Tettelin
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-018-23978-z

IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
Cited by: 20
Author(s): Daichi Shigemizu, Fuyuki Miya, Shintaro Akiyama, Shujiro Okuda, Keith A. Boroevich, Akihiro Fujimoto, Hidewaki Nakagawa, Kouichi Ozaki, Shumpei Niida, Yonehiro Kanemura, Nobuhiko Okamoto, Shinji Saitoh, Mitsuhiro Kato, Mami Yamasaki, Tatsuo Matsunaga, Hideki Mutai, Kenjiro Kosaki, Tatsuhiko Tsunoda
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-015-2058-3

Blood transcriptomics of drug-naïve sporadic Parkinson’s disease patients
Cited by: 61
Author(s): Raffaella Calligaris, Mihaela Banica, Paola Roncaglia, Elisa Robotti, Sara Finaurini, Christina Vlachouli, Lucia Antonutti, Francesco Iorio, Annamaria Carissimo, Tatiana Cattaruzza, Andrea Ceiner, Dejan Lazarevic, Alberto Cucca, Nicola Pangher, Emílio Marengo, Diego di Bernardo, Gilberto Pizzolato, Stefano Gustincich
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-26427-z

Chytridiomycosis causes catastrophic organism-wide metabolic dysregulation including profound failure of cellular energy pathways
Cited by: 16
Author(s): Laura F. Grogan, Lee F. Skerratt, Lee Berger, Scott D. Cashins, Robert D. Trengove, Joel Gummer
Software Mentions: 1
Published: about 8 years ago

10.1186/s13068-015-0415-8

SorGSD: a sorghum genome SNP database
Cited by: 41
Author(s): Hong Luo, Wenming Zhao, Yanqing Wang, Yan Xia, Xiaoyuan Wu, Limin Zhang, Bixia Tang, Junwei Zhu, Fang Lü, Zhenglin Du, Wubishet A. Bekele, Shuaishuai Tai, David R. Jordan, Ian D. Godwin, Rod J. Snowdon, Emma Mace, Hai‐Chun Jing, Jianxun Luo
Software Mentions: 1
Published: over 10 years ago

10.1186/s13068-015-0260-9

Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum
Cited by: 30
Author(s): Keerthi P. Venkataramanan, Lie Min, Shuyu Hou, Shawn W. Jones, Matthew T. Ralston, Kelvin H. Lee, Eleftherios T. Papoutsakis
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13068-019-1554-0

Metabolic engineering of Bacillus amyloliquefaciens for enhanced production of S-adenosylmethionine by coupling of an engineered S-adenosylmethionine pathway and the tricarboxylic acid cycle
Cited by: 15
Author(s): Liying Ruan, Lü Li, Dian Zou, Cong Jiang, Zhiyou Wen, Shouwen Chen, Yu Deng, Xuetuan Wei
Software Mentions: 1
Published: over 6 years ago

10.1186/1754-6834-7-31

Transcriptional comparison of the filamentous fungus Neurospora crassagrowing on three major monosaccharides D-glucose, D-xylose and L-arabinose
Cited by: 53
Author(s): Jingen Li, Liangcai Lin, Yong Li, Chaoguang Tian, Yanhe Ma
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-018-26425-1

Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic
Cited by: 13
Author(s): Kazue Nakanaga, Yoshitoshi Ogura, Atsushi Toyoda, Mitsunori Yoshida, Hanako Fukano, Nagatoshi Fujiwara, Yuji Miyamoto, Noboru Nakata, Yuko Kazumi, Shingo Maeda, Tadasuke Ooka, Masamichi Goto, Kazunari Tanigawa, Satoshi Mitarai, Koichi Suzuki, Norihisa Ishii, Manabu Ato, Tetsuya Hayashi, Yoshihiko Hoshino
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-5-71

Inter-Platform comparability of microarrays in acute lymphoblastic leukemia
Cited by: 31
Author(s): Stephanie A Mitchell, Kevin M. Brown, M. M. Henry, Michelle Mintz, Daniel Catchpoole, Bonnie LaFleur, Dietrich A. Stephan
Software Mentions: 1
Published: over 21 years ago

10.1038/boneres.2017.30

New insights into the vitamin D requirements during pregnancy
Cited by: 84
Author(s): Bruce W. Hollis, Carol L. Wagner
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41416-019-0725-x

Anti-VEGF therapy resistance in ovarian cancer is caused by GM-CSF-induced myeloid-derived suppressor cell recruitment
Cited by: 57
Author(s): Naoki Horikawa, Kaoru Abiko, Noriomi Matsumura, Tsukasa Baba, Junzo Hamanishi, Ken Yamaguchi, Ryusuke Murakami, Mana Taki, Masao Ukita, Yuko Hosoe, Masafumi Koshiyama, Ikuo Konishi, Masaki Mandai
Software Mentions: 1
Published: over 6 years ago

10.1038/s41416-021-01377-y

The circulating soluble form of the CD40 costimulatory immune checkpoint receptor and liver metastasis risk in rectal cancer
Cited by: 7
Author(s): Sebastian Meltzer, Annette Torgunrud, Hanna Abrahamsson, Arne M. Solbakken, Kjersti Flatmark, Svein Dueland, Kine Mari Bakke, Paula A. Bousquet, Anne Negård, Christin Johansen, Lars Gustav Lyckander, Finn Ole Larsen, Jesper Sølver Schou, Kathrine Røe Redalen, Anne Hansen Ree
Software Mentions: 1
Published: about 5 years ago

10.1038/bjc.2017.102

Decreased levels of baseline and drug-induced tubulin polymerisation are hallmarks of resistance to taxanes in ovarian cancer cells and are associated with epithelial-to-mesenchymal transition
Cited by: 36
Author(s): George E. Durán, Yan C. Wang, François Moisan, E. Brian Francisco, Branimir I. Šikić
Software Mentions: 1
Published: about 9 years ago

10.1002/brb3.686

Resting state and personality component (BIS/BAS) predict the brain activity (EEG and fNIRS measure) in response to emotional cues
Cited by: 24
Author(s): Michela Balconi, Maria Elide Vanutelli, Elisabetta Grippa
Software Mentions: 1
Published: about 9 years ago

10.1007/s40708-017-0069-3

Emotion recognition based on EEG features in movie clips with channel selection
Cited by: 89
Author(s): Mehmet Siraç Özerdem, Hasan Polat
Software Mentions: 1
Published: almost 9 years ago

10.3390/brainsci11010035

Oscillatory EEG Signatures of Affective Processes during Interaction with Adaptive Computer Systems
Cited by: 3
Author(s): Mathias Vukelić, Katharina Lingelbach, Kathrin Pollmann, Matthias Peißner
Software Mentions: 1
Published: over 5 years ago

10.3390/brainsci11020128

The Influence of Video Format on Engagement and Performance in Online Learning
Cited by: 18
Author(s): Sergej Lackmann, Pierre-Majorique Léger, Patrick Charland, Caroline Aubé, Jean Talbot
Software Mentions: 1
Published: over 5 years ago

10.3390/brainsci8080157

Magnetoencephalography: Clinical and Research Practices
Cited by: 9
Author(s): Jennifer R. Stapleton-Kotloski, Robert J. Kotloski, Gautam Popli, Dwayne W. Godwin
Software Mentions: 1
Published: almost 8 years ago

10.3390/brainsci6010001

REM-Enriched Naps Are Associated with Memory Consolidation for Sad Stories and Enhance Mood-Related Reactivity
Cited by: 35
Author(s): Médhi Gilson, Gaétane Deliens, Rachel Leproult, Alice Bodart, Antoine Nonclercq, Rudy Ercek, Philippe Peigneux
Software Mentions: 1
Published: over 10 years ago

10.3390/brainsci11020274

A Muscular and Cerebral Physiological Indices Assessment for Stress Measuring during Virtual Wheelchair Guidance
Cited by: 2
Author(s): Mohamed Moncef Ben Khelifa, Hachem A. Lamti, Vincent Hugel
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-10-5

Bayesian optimal discovery procedure for simultaneous significance testing
Cited by: 22
Author(s): Jing Cao, Xian-Jin Xie, Song Zhang, Angelique W. Whitehurst, Michael A. White
Software Mentions: 1
Published: over 17 years ago

10.1590/1414-431X20209021

Expression of CHPF modulates cell proliferation and invasion in lung cancer
Cited by: 6
Author(s): Chengsong Cao, Yong Liu, Qun Wang, Jing Zhao, Ming Shi, Jian Zheng
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.100900

Altered lipid metabolism in the aging kidney identified by three layered omic analysis
Cited by: 45
Author(s): Fabian Braun, Markus M. Rinschen, Valerie Bartels, Peter Frommolt, Bianca Habermann, Jan H.J. Hoeijmakers, Björn Schumacher, Martijn E.T. Dollé, Roman‐Ulrich Müller, Thomas Benzing, Bernhard Schermer, Christine Kurschat
Software Mentions: 1
Published: over 10 years ago

10.1186/bcr1732

Molecular response to aromatase inhibitor treatment in primary breast cancer
Cited by: 109
Author(s): Alan Mackay, Ander Urruticoechea, JM Dixon, Tim Dexter, Kerry Fenwick, Alan Ashworth, Suzanne Drury, Alexey Larionov, Oliver Young, Sharon White, William R. Miller, Dean B. Evans, Mitch Dowsett
Software Mentions: 1
Published: about 19 years ago

10.1186/bcr2590

Molecular subtypes of breast cancer are associated with characteristic DNA methylation patterns
Cited by: 251
Author(s): Karolina Holm, Cecilia Hegardt, Johan Staaf, Johan Vallon‐Christersson, Göran Jönsson, Håkan Olsson, Åke Borg, Markus Ringnér
Software Mentions: 1
Published: about 16 years ago

10.1186/s12864-021-07892-9

InvertypeR: Bayesian inversion genotyping with Strand-seq data
Cited by: 3
Author(s): Vincent C.T. Hanlon, Carl-Adam Mattsson, Diana C.J. Spierings, Victor Guryev, Peter M Lansdorp
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13058-014-0415-9

A joint analysis of metabolomics and genetics of breast cancer
Cited by: 150
Author(s): Xiaohu Tang, Chao-Chieh Lin, Ivan Spasojević, Edwin S. Iversen, Jen-Tsan Chi, Jeffrey R. Marks
Software Mentions: 1
Published: almost 12 years ago

10.3390/microorganisms7110499

Elucidating Escherichia Coli O157:H7 Colonization and Internalization in Cucumbers Using an Inverted Fluorescence Microscope and Hyperspectral Microscopy
Cited by: 6
Author(s): Yeting Sun, Dan Wang, Yue Ma, Hongyang Guan, Hao Liang, Xiaoyan Zhao
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-3402-y

An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.)
Cited by: 24
Author(s): Ye Jiang, Yuhua Yang, Bin Chen, Jiaqin Shi, Meizhong Luo, Jiasui Zhan, Xinfa Wang, Guihua Liu, Hanzhong Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-11-85

MicroRNAs show diverse and dynamic expression patterns in multiple tissues of Bombyx mori
Cited by: 59
Author(s): Shiping Liu, Song Gao, Danyu Zhang, Jiyun Yin, Xiang Zhang, Qingyou Xia
Software Mentions: 1
Published: over 16 years ago

Projects: cran: SAM

Science Score: 85/100

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Penalties:

Papers Mentioning SAM 4,566