cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0024595

Suppression of Breast Tumor Growth and Metastasis by an Engineered Transcription Factor
Cited by: 46
Author(s): Adriana S. Beltran, Angela Russo, Haydee Lara, Cheng Fan, Paul M. Lizardi, Pilar Blancafort
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0158991

Affective Pictures and the Open Library of Affective Foods (OLAF): Tools to Investigate Emotions toward Food in Adults
Cited by: 31
Author(s): Laura Miccoli, R. Delgado, Pedro Guerra, Francesco Versace, Sonia Rodríguez‐Ruiz, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0149982

The Economic Impact of Eradicating Peste des Petits Ruminants: A Benefit-Cost Analysis
Cited by: 77
Author(s): B. Jones, Karl M. Rich, Jeffrey C. Mariner, J. Anderson, Martyn Jeggo, Sam Thevasagayam, Yi Cai, A. R. Peters, P. L. Roeder
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0019321

The Involvement of SMILE/TMTC3 in Endoplasmic Reticulum Stress Response
Cited by: 26
Author(s): Maud Racapé, Jean‐Paul Duong Van Huyen, Richard Danger, Magali Giral, Françoise Bleicher, Yohann Foucher, Annaïck Pallier, Paul Pilet, Petra Tafelmeyer, Joanna Ashton‐Chess, Emilie Dugast, Ségolène Pettré, Béatrice Charreau, Jean‐Paul Soulillou, Sophie Brouard
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0020060

Non-Parametric Change-Point Method for Differential Gene Expression Detection
Cited by: 30
Author(s): Yao Wang, Chunguo Wu, Zhaohua Ji, Bing–Hong Wang, Yanchun Liang
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0044822

Distinct Functional Patterns of Gene Promoter Hypomethylation and Hypermethylation in Cancer Genomes
Cited by: 25
Author(s): Xiaopei Shen, Zheng He, Hongdong Li, Chen Yao, Yang Zhang, Lang He, Shan Li, Jian Huang, Zheng Guo
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0005987

Induction of Empathy by the Smell of Anxiety
Cited by: 188
Author(s): Alexander Prehn‐Kristensen, Christian D. Wiesner, Til Ole Bergmann, Stephan Wolff, Olav Jansen, H. Maximilian Mehdorn, Roman Ferstl, Bettina M. Pause
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0234343

Predictors of in-hospital mortality among under-five children with severe acute malnutrition in South-Western Uganda
Cited by: 7
Author(s): Timothy Nduhukire, Daniel Atwine, Rachel Luwaga, Joseph Byonanebye
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0154604

Manipulating the Prion Protein Gene Sequence and Expression Levels with CRISPR/Cas9
Cited by: 19
Author(s): Lech Kaczmarczyk, Ylva Mende, Branko Zevnik, Walker S. Jackson
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0126070

Tn-Seq Explorer: A Tool for Analysis of High-Throughput Sequencing Data of Transposon Mutant Libraries
Cited by: 61
Author(s): Sina Solaimanpour, Felipe Sarmiento, Jan Mrázek
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0221764

Bayesian multilevel model of micro RNA levels in ovarian-cancer and healthy subjects
Cited by: 7
Author(s): Paweł Wiczling, Emilia Daghir-Wojtkowiak, Roman Kaliszan, Michał J. Markuszewski, Janusz Limon, Magdalena Koczkowska, Maciej Stukan, Alina Kuźniacka, Magdalena Ratajska
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0009730

Distinct Types of Fibrocyte Can Differentiate from Mononuclear Cells in the Presence and Absence of Serum
Cited by: 53
Author(s): S. John Curnow, Marianne Elizabeth Fairclough, Caroline Schmutz, Steve Kissane, Alastair K Denniston, Kate Nash, Christopher D. Buckley, Janet M. Lord, Mike Salmon
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0122285

The Role of HOXB9 and miR-196a in Head and Neck Squamous Cell Carcinoma
Cited by: 49
Author(s): Lav Darda, Fahad Hakami, Richard Morgan, Craig Murdoch, D Lambert, Keith D. Hunter
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0228584

The role of mobility in sexual risk behaviour and HIV acquisition among sub-Saharan African migrants residing in two European cities
Cited by: 14
Author(s): Sónia Dias, Ana Gama, Jasna Loos, Luis Roxo, Daniel Simões, Christiana Nöstlinger
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0134955

Simultaneous Hypoxia and Low Extracellular pH Suppress Overall Metabolic Rate and Protein Synthesis In Vitro
Cited by: 17
Author(s): Brita Singers Sørensen, Morten Busk, Jens Overgaard, Michael R. Horsman, Jan Alsner
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0024287

Structural Mechanism of S-Adenosyl Methionine Binding to Catechol O-Methyltransferase
Cited by: 29
Author(s): Douglas Tsao, Luda Diatchenko, Nikolay V. Dokholyan
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0058469

Additional Routes to Staphylococcus aureus Daptomycin Resistance as Revealed by Comparative Genome Sequencing, Transcriptional Profiling, and Phenotypic Studies
Cited by: 49
Author(s): Yang Song, Aileen Rubio, Radheshyam K. Jayaswal, Jared Silverman, Brian J. Wilkinson
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0012243

Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis
Cited by: 31
Author(s): Felix Rückert, Gihan Dawelbait, Christof Winter, Arndt Hartmann, Axel Denz, Ole Ammerpohl, Michael Schroeder, Hans K. Schackert, Bence Sipos, Günter Klöppel, Holger Kalthoff, Hans‐Detlev Saeger, Christian Pilarsky, Robert Grützmann
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0066714

Principal Component Analysis Based Feature Extraction Approach to Identify Circulating microRNA Biomarkers
Cited by: 62
Author(s): Y-h. Taguchi, Yoshiki Murakami
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0093243

Serum Inflammatory Mediators as Markers of Human Lyme Disease Activity
Cited by: 47
Author(s): Mark J. Soloski, Lauren A. Crowder, Lauren J. Lahey, Catriona A. Wagner, William H. Robinson, John N. Aucott
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0043769

Transcriptional Profiling of Midgut Immunity Response and Degeneration in the Wandering Silkworm, Bombyx mori
Cited by: 40
Author(s): Qiufang Xu, Aijun Lü, Guohua Xiao, Bing Yang, Jie Zhang, Xuquan Li, Jingmin Guan, Qi-Miao Shao, Brenda T. Beerntsen, Peng Zhang, Chengshu Wang, Erjun Ling
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0112119

Defining Landscape Resistance Values in Least-Cost Connectivity Models for the Invasive Grey Squirrel: A Comparison of Approaches Using Expert-Opinion and Habitat Suitability Modelling
Cited by: 49
Author(s): Claire D. Stevenson-Holt, Kevin Watts, Chloe Bellamy, Owen Nevin, Andrew D. Ramsey
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0026369

Strain-Dependent Host Transcriptional Responses to Toxoplasma Infection Are Largely Conserved in Mammalian and Avian Hosts
Cited by: 22
Author(s): Yi-Ching Ong, Jon P. Boyle, John C. Boothroyd
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0182588

HspB5 correlates with poor prognosis in colorectal cancer and prompts epithelial-mesenchymal transition through ERK signaling
Cited by: 18
Author(s): Qinghua Li, Yanlan Wang, Yuexing Lai, Ping Xu, Zhiwen Yang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0139542

Pathos & Ethos: Emotions and Willingness to Pay for Tobacco Products
Cited by: 14
Author(s): Francesco Bogliacino, Cristiano Codagnone, Giuseppe Veltri, Amitav Chakravarti, Pietro Ortoleva, George Gaskell, Andriy Ivchenko, Francisco Lupiáñez-Villanueva, Francesco Mureddu, Caroline Rudisill
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0121887

Catecholamines Promote Actinobacillus pleuropneumoniae Growth by Regulating Iron Metabolism
Cited by: 14
Author(s): Lü Li, Zhaohui Chen, Weicheng Bei, Zhipeng Su, Qi Huang, Liang Zhang, Huanchun Chen, Rui Zhou
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0254940

Sports ingroup love does not make me like the sponsor’s beverage but gets me buying it
Cited by: 0
Author(s): Sara Franco, Ana María Abreu, Rui Biscaia, Sandra Gama
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0114515

Meet OLAF, a Good Friend of the IAPS! The Open Library of Affective Foods: A Tool to Investigate the Emotional Impact of Food in Adolescents
Cited by: 44
Author(s): Laura Miccoli, R. Delgado, Sonia Rodríguez‐Ruiz, Pedro Guerra, Eduardo García-Mármol, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0046247

Selecting Biological Meaningful Environmental Dimensions of Low Discrepancy among Ranges to Predict Potential Distribution of Bean Plataspid Invasion
Cited by: 16
Author(s): Gengping Zhu, Matthew J. Petersen, Wenjun Bu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0113925

Insights into Molecular Features of Venerupis decussata Oocytes: A Microarray-Based Study
Cited by: 5
Author(s): Marianna Pauletto, Massimo Milan, Joana Sousa, Arnaud Huvet, Sandra Joaquim, Domitília Matias, Alexandra Leitão, Tomaso Patarnello, Luca Bargelloni
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0064963

Elevational Distribution and Conservation Biogeography of Phanaeine Dung Beetles (Coleoptera: Scarabaeinae) in Bolivia
Cited by: 38
Author(s): Sebastián K. Herzog, A. Caroli Hamel‐Leigue, Trond H. Larsen, Darren J. Mann, Rodrigo W. Soria-Auza, Bruce D. Gill, W. D. Edmonds, Sacha Spector
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0027027

Testing the Water–Energy Theory on American Palms (Arecaceae) Using Geographically Weighted Regression
Cited by: 32
Author(s): Wolf L. Eiserhardt, Stine Bjorholm, Jens‐Christian Svenning, Thiago F. Rangel, Henrik Balslev
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0043571

Using Activity-Related Behavioural Features towards More Effective Automatic Stress Detection
Cited by: 68
Author(s): Dimitrios Giakoumis, Anastasios Drosou, Pietro Cipresso, Dimitrios Tzovaras, George Hassapis, Andrea Gaggioli, Giuseppe Riva
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0075012

Differentially Expressed MicroRNAs in Chondrocytes from Distinct Regions of Developing Human Cartilage
Cited by: 44
Author(s): Audrey McAlinden, Nobish Varghese, Louisa Wirthlin, Li‐Wei Chang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0201784

Genetic parameters and quantitative trait loci analysis associated with body size and timing at metamorphosis into glass eels in captive-bred Japanese eels (Anguilla japonica)
Cited by: 9
Author(s): Kazuharu Nomura, Atushi Fujiwara, Yoshiaki Iwasaki, Issei Nishiki, Aiko Matsuura, Akiyuki Ozaki, Ryusuke Sudo, Hideki Tanaka
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0010776

In Vivo Identification of Solar Radiation-Responsive Gene Network: Role of the p38 Stress-Dependent Kinase
Cited by: 12
Author(s): Nicolas Mouchet, H. Adamski, R. Bouvet, Sébastien Corre, Yann Courbebaisse, Éric Watier, Jean Mosser, Christophe Chesné, Marie‐Dominique Galibert
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0005805

Gene Expression in Peripheral Blood Leukocytes in Monozygotic Twins Discordant for Chronic Fatigue: No Evidence of a Biomarker
Cited by: 24
Author(s): Andrea Byrnes, Andreas Jacks, Karin Dahlman-Wright, Birgitta Evengård, Fred A. Wright, Nancy L. Pedersen, Patrick F. Sullivan
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0015590

Olfactory Stem Cells, a New Cellular Model for Studying Molecular Mechanisms Underlying Familial Dysautonomia
Cited by: 45
Author(s): Nathalie Boone, Béatrice Loriod, Aurélie Bergon, Oualid Sbai, Christine Formisano-Tréziny, Jean Gabert, Michel Khrestchatisky, Catherine Nguyen, François Féron, Felicia B. Axelrod, El Chérif Ibrahim
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0020557

Predicting Protein Folds with Fold-Specific PSSM Libraries
Cited by: 8
Author(s): Young Ki Hong, Sree V. Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian B. van Rossum, Randen L. Patterson
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0065319

The Dynamics of Soybean Leaf and Shoot Apical Meristem Transcriptome Undergoing Floral Initiation Process
Cited by: 42
Author(s): Chui Eng Wong, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0170245

Weakening self-control biases the emotional evaluation of appetitive cues
Cited by: 7
Author(s): Christian D. Wiesner, Christoph Lindner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0057172

Autophagy and Cellular Senescence Mediated by Sox2 Suppress Malignancy of Cancer Cells
Cited by: 43
Author(s): Yong‐Yeon Cho, Dong Joon Kim, Hye Suk Lee, Chul Ho Jeong, Eun Jin Cho, Myong Ok Kim, Sun‐Sig Byun, Kun Yeong Lee, Ke Yao, Andria Carper, Alyssa Langfald, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0061296

A Beamformer Analysis of MEG Data Reveals Frontal Generators of the Musically Elicited Mismatch Negativity
Cited by: 30
Author(s): Claudia Lappe, Olaf Steinsträter, Christo Pantev
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0007856

Correlating Global Gene Regulation to Angiogenesis in the Developing Chick Extra-Embryonic Vascular System
Cited by: 60
Author(s): Sophie Javerzat, Mélanie Franco, John Herbert, N. Platonova, Anne-Lise Peille, Véronique Pantesco, John De Vos, Saïd Assou, Roy Bicknell, Andréas Bikfalvi, Martin Hagedorn
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0059636

Androgen Inhibits Abdominal Fat Accumulation and Negatively Regulates the PCK1 Gene in Male Chickens
Cited by: 25
Author(s): Jinlin Duan, Fan Su, Yi Shao, Junying Li, Ling Yao, Ke Teng, Hongwei Li, Changxin Wu
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0018613

Differential Glucose-Regulation of MicroRNAs in Pancreatic Islets of Non-Obese Type 2 Diabetes Model Goto-Kakizaki Rat
Cited by: 160
Author(s): Jonathan L.S. Esguerra, Caroline Bolmeson, Corrado Cilio, Lena Eliasson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0006213

Involvement of the Post-Transcriptional Regulator Hfq in Yersinia pestis Virulence
Cited by: 90
Author(s): Jing Geng, Yajun Song, Lei Yang, Yanyan Feng, Yefeng Qiu, Gang Li, Jingyu Guo, Yujing Bi, Yi Qu, Wang Wang, Xiaoyi Wang, Zhaobiao Guo, Ruifu Yang, Yanping Han
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0082006

ROS Stress Resets Circadian Clocks to Coordinate Pro-Survival Signals
Cited by: 81
Author(s): Teruya Tamaru, Mitsuru Hattori, Yasuharu Ninomiya, Genki Kawamura, Guillaume Varès, Kousuke Honda, Durga Prasad Mishra, Bing Wang, Ivor J. Benjamin, Paolo Sassone‐Corsi, Toshio Ozawa, Ken Takamatsu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0030840

Progesterone Inhibits Epithelial-to-Mesenchymal Transition in Endometrial Cancer
Cited by: 63
Author(s): Paul H. van der Horst, Yong-Yi Wang, Ingrid Vandenput, Liesbeth C. Kühne, Patricia C. Ewing, Wilfred F. J. van IJcken, Marten van der Zee, Frédéric Amant, Curt W. Burger, Leen J. Blok
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008189

Integrative Discovery of Epigenetically Derepressed Cancer Testis Antigens in NSCLC
Cited by: 64
Author(s): Chad A. Glazer, Ian Smith, Michael F. Ochs, Shahnaz Begum, William H. Westra, Steven S. Chang, Wenyue Sun, Sheetal Bhan, Zubair Khan, Steven A. Ahrendt, Joseph A. Califano
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0109611

The Long-HER Study: Clinical and Molecular Analysis of Patients with HER2+ Advanced Breast Cancer Who Become Long-Term Survivors with Trastuzumab-Based Therapy
Cited by: 23
Author(s): Angelo Gámez‐Pozo, Ramón María Pérez Carrión, Luis Manso, Carmen Crespo, C. Mendiola, Rocío López-Vacas, Julia Berges-Soria, Isabel Álvarez López, Mireia Margelı́, Juan Lucas Bayo Calero, Xavier Farré, Ana Santaballa, Eva Ciruelos, Renata Afonso, Juan Lao, G. Catalán, J Gallego, José Miramón López, F.J. Salvador Bofill, Manuel Ruíz-Borrego, Enrique Espinosa, Juan Ángel Fresno Vara, Pilar Zamora
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0031246

Potential Geographic Distribution of Brown Marmorated Stink Bug Invasion (Halyomorpha halys)
Cited by: 151
Author(s): Gengping Zhu, Wenjun Bu, Yubao Gao, Guoqing Liu
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0043334

Spatial Genetic Structure in Natural Populations of Phragmites australis in a Mosaic of Saline Habitats in the Yellow River Delta, China
Cited by: 20
Author(s): Lexuan Gao, Shaoqing Tang, Liqiong Zhuge, Ming Nie, Zhu Zhu, Bo Li, Ji Hyun Yang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0098069

Switch in FOXA1 Status Associates with Endometrial Cancer Progression
Cited by: 22
Author(s): Ingvild L. Tangen, Camilla Krakstad, Mari K. Halle, Henrica M.J. Werner, Anne Margrete Øyan, Kanthida Kusonmano, Kjell Petersen, Karl‐Henning Kalland, Lars A. Akslen, Jone Trovik, Antoni Hurtado, Helga B. Salvesen
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0022730

Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1)
Cited by: 48
Author(s): Ankit Gupta, Pruthvi Nagilla, Hai-Son Le, Coulton Bunney, Courtney Zych, Anbupalam Thalamuthu, Ziv Bar‐Joseph, Sinnakaruppan Mathavan, Velpandi Ayyavoo
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0006527

Apoptosis of CD4+CD25high T Cells in Type 1 Diabetes May Be Partially Mediated by IL-2 Deprivation
Cited by: 74
Author(s): Parthav Jailwala, Jill Waukau, Sanja Glišić, Swapan Kumar Jana, S.J. Ehlenbach, Martin J. Hessner, Ramin Alemzadeh, Shigemi Matsuyama, Purushottam W. Laud, Xujing Wang, Soumitra Ghosh
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0111589

Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae
Cited by: 4
Author(s): Sandra Mota, Neide Vieira, Sónia Barbosa, Thierry Delaveau, Claire Torchet, Agnès Le Saux, Mathilde Garcia, Ana Sofia Pereira, Sophie Lemoine, Fanny Coulpier, Xavier Darzacq, Lionel Bénard, Margarida Casal, Frédéric Devaux, Sandra Paiva
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0025195

Does Lateral Transmission Obscure Inheritance in Hunter-Gatherer Languages?
Cited by: 69
Author(s): Claire Bowern, Patience Epps, Russell D. Gray, Jane H. Hill, Keith Hunley, Patrick McConvell, Jason Zentz
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0070096

Downregulation of Steroid Receptor Coactivator-2 Modulates Estrogen-Responsive Genes and Stimulates Proliferation of MCF-7 Breast Cancer Cells
Cited by: 23
Author(s): Ingvild S. Fenne, Thomas Helland, Marianne Hauglid Flågeng, Simon N. Dankel, Gunnar Mellgren
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0045839

Genome-Wide Expression Profiling Identifies Type 1 Interferon Response Pathways in Active Tuberculosis
Cited by: 193
Author(s): Tom H. M. Ottenhoff, Ranjeeta Hari Dass, Ninghan Yang, Mingzi M. Zhang, Hazel E. E. Wong, Edhyana Sahiratmadja, Chiea‐Chuen Khor, Bachti Alisjahbana, Reinout van Crevel, Sangkot Marzuki, Mark Seielstad, Esther van de Vosse, Martin L. Hibberd
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0076459

A SNP Based High-Density Linkage Map of Apis cerana Reveals a High Recombination Rate Similar to Apis mellifera
Cited by: 15
Author(s): Yuan Shi, Liang Sun, Huang Zhi, Xiao Wu, Yangyang Zhu, Hua Jun Zheng, Zhi Zeng
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0062909

Complex Genetic Architecture of Cardiac Disease in a Wild Type Inbred Strain of Drosophila melanogaster
Cited by: 5
Author(s): Zhi Zhang, Benjamin Hsieh, Amy R. Poe, Julie Anderson, Karen Ocorr, Greg Gibson, Rolf Bodmer
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0201742

Glial responses during epileptogenesis in Mus musculus point to potential therapeutic targets
Cited by: 19
Author(s): Georgia Kalozoumi, Olga V. Kel-Margoulis, Elizabeth Vafiadaki, David Greenberg, Hélène Bernard, Hermona Soreq, Antoine Depaulis, Despina Sanoudou
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0185281

Identification of a novel frameshift mutation in the ILDR1 gene in a UAE family, mutations review and phenotype genotype correlation
Cited by: 6
Author(s): Abdelaziz Tlili, Abdullah Fahd Al Mutery, Mona Mahfood, Walaa Kamal Eldin Mohamed, Khalid Bajou
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0000116

MiRNA-Directed Regulation of VEGF and Other Angiogenic Factors under Hypoxia
Cited by: 609
Author(s): Hua Zhong, Qing Lv, Michael Fraser, Chung-Kwun Amy Wong, Guoping Cai, Dayong Gu, Yanhong Ji, Chen Zhao, Jifeng Wang, Burton B. Yang, Yaou Zhang
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0197333

Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing
Cited by: 52
Author(s): Sabine Hellwig, David A. Nix, Keith M. Gligorich, John O’Shea, Alun Thomas, Carrie L. Fuertes, Preetida J. Bhetariya, Gábor Marth, Mary P. Bronner, Hunter R. Underhill
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0182272

Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data
Cited by: 19
Author(s): Bo Young Kim, Jung Hoon Park, Hye Yeong Jo, Soo Kyung Koo, Mi-Hyun Park
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0151224

Generation of Antigen Microarrays to Screen for Autoantibodies in Heart Failure and Heart Transplantation
Cited by: 16
Author(s): Andrzej Chruscinski, Flora Huang, Albert Nguyen, Jocelyn Lioe, Laura C. Tumiati, Stella Kozuszko, Kathryn Tinckam, Vivek Rao, Shannon Dunn, Michael A. Persinger, Gary Levy, Heather J. Ross
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0005212

The Yeast PNC1 Longevity Gene Is Up-Regulated by mRNA Mistranslation
Cited by: 19
Author(s): Raquel M. Silva, Iven C. N. Duarte, João A. Paredes, Tatiana Lima-Costa, Michel Perrot, Hélian Boucherie, Brian J. Goodfellow, Ana Catarina Gomes, Denisa D. Mateus, Gabriela Moura, Manuel A. S. Santos
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0223881

Real vs. immersive-virtual emotional experience: Analysis of psycho-physiological patterns in a free exploration of an art museum
Cited by: 46
Author(s): Javier Marín‐Morales, Juan Luis Higuera-Trujillo, Alberto Greco, Jaime Guixeres, Carmen Llinares, Claudio Gentili, Enzo Pasquale Scilingo, Mariano Alcañíz, Gaetano Valenza
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0115241

Functional and Evolutionary Significance of Human MicroRNA Seed Region Mutations
Cited by: 35
Author(s): Christopher G. Hill, Neda Jabbari, Lilya V. Matyunina, John F. McDonald
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0034185

Deficiency in Nucleotide Excision Repair Family Gene Activity, Especially ERCC3, Is Associated with Non-Pigmented Hair Fiber Growth
Cited by: 7
Author(s): Man Yu, Robert H. Bell, Maggie M. Ho, Gph Leung, Anne Haegert, Nicholas Carr, Jerry Shapiro, Kevin J. McElwee
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0004706

In Silico Simulation of Corticosteroids Effect on an NFkB- Dependent Physicochemical Model of Systemic Inflammation
Cited by: 63
Author(s): Panagiota T. Foteinou, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0040476

Molecular Characterization of Circulating Tumor Cells in Human Metastatic Colorectal Cancer
Cited by: 78
Author(s): Jorge Barbazán, Lorena Alonso-Alconada, Laura Muinelo‐Romay, María Vieito, Alicia Abalo, Marta Alonso-Nocelo, Sonia Candamio, Elena Gallardo, B. Díaz Fernández, Ihab Abdulkader, María de los Ángeles Casares, Antonio Gómez-Tato, Rafael López‐López, Miguel Abal
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0058471

The miR-183/Taok1 Target Pair Is Implicated in Cochlear Responses to Acoustic Trauma
Cited by: 34
Author(s): Minal Patel, Qunfeng Cai, Dalian Ding, Richard Salvi, Zihua Hu, Bo Hu
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0071989

Functional Comparison between Genes Dysregulated in Ulcerative Colitis and Colorectal Carcinoma
Cited by: 7
Author(s): Wenyuan Zhao, Lishuang Qi, Qing Yao, Hongwei Wang, Beibei Chen, Ruiping Wang, Yunyan Gu, Chunyang Liu, Chenguang Wang, Zheng Guo
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0235259

Recovery rate and its predictors among children with severe acute malnutrition in Addis Ababa, Ethiopia: A retrospective cohort study
Cited by: 4
Author(s): Zebenay Workneh Bitew, Animut Alebel, Teshager Worku, Ayinalem Alemu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0009189

A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems
Cited by: 39
Author(s): Tim Hohm, Eckart Zitzler, Rüdiger Simon
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0058235

Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
Cited by: 74
Author(s): Midori Kato‐Maeda, Christine Ho, Ben Passarelli, Niaz Banaei, Jennifer Grinsdale, Laura L Flores, J.P. Anderson, Megan Murray, Graham Rose, L. Masae Kawamura, Nader Pourmand, Muhammad Tariq, Sébastien Gagneux, Philip C. Hopewell
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0155901

Validation of Novel Biomarkers for Prostate Cancer Progression by the Combination of Bioinformatics, Clinical and Functional Studies
Cited by: 40
Author(s): Saeid Alinezhad, Riina Minna Väänänen, Jesse Mattsson, Yifeng Li, Terhi Tallgrén, Natalia Tong Ochoa, Anders Bjartell, Malin Åkerfelt, Pekka Taimen, Peter J. Boström, Kim Pettersson, Matthias Nees
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0008136

Gender Differences in a Drosophila Transcriptomic Model of Chronic Pentylenetetrazole Induced Behavioral Deficit
Cited by: 7
Author(s): Abhay Sharma, Farhan Mohammad, Priyanka Singh
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0059722

High-Throughput Carrier Screening Using TaqMan Allelic Discrimination
Cited by: 25
Author(s): Anastasia Fedick, Jing Su, Chaim Jalas, Lesley E. Northrop, Batsal Devkota, Josef Ekstein, Nathan R. Treff
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0074140

Sporadic Colorectal Cancer Development Shows Rejuvenescence Regarding Epithelial Proliferation and Apoptosis
Cited by: 10
Author(s): Katalin Leiszter, Orsolya Galamb, Ferenc Sípos, Tibor Krenács, Gábor Veres, Barnabás Wichmann, Alexandra Kalmár, Árpád V. Patai, Kinga Tóth, Gábor Valcz, Béla Molnár, Zsolt Tulassay
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0219574

On the trail of Scandinavia’s early metallurgy: Provenance, transfer and mixing
Cited by: 26
Author(s): H. Nørgaard, Ernst Pernicka, Helle Vandkilde
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0129776

Modulation of PICALM Levels Perturbs Cellular Cholesterol Homeostasis
Cited by: 10
Author(s): Jacob L. Mercer, Joseph P. Argus, Donna Crabtree, Melissa M. Keenan, Moses Q. Wilks, Jen‐Tsan Chi, Steven J. Bensinger, Catherine Lavau, Daniel S. Wechsler
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0044583

Analysis of the Transcriptomes Downstream of Eyeless and the Hedgehog, Decapentaplegic and Notch Signaling Pathways in Drosophila melanogaster
Cited by: 11
Author(s): Landry Nfonsam, Carlos Cano, Joann Mudge, Faye Schilkey, Jennifer Curtiss
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0080114

GSTM1 Gene Expression Correlates to Leiomyoma Volume Regression in Response to Mifepristone Treatment
Cited by: 21
Author(s): Mikael Engman, Suby Jo Varghese, Kristina Lagerstedt‐Robinson, Helena Malmgren, Anna Hammarsjö, Birgitta Byström, Parameswaran Grace Lalitkumar, Kristina Gemzell‐Danielsson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0029686

Reproducibility and Concordance of Differential DNA Methylation and Gene Expression in Cancer
Cited by: 20
Author(s): Chen Yao, Hongdong Li, Xiaopei Shen, Zheng He, Lang He, Zheng Guo
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0016703

A PXR-Mediated Negative Feedback Loop Attenuates the Expression of CYP3A in Response to the PXR Agonist Pregnenalone-16α-Carbonitrile
Cited by: 25
Author(s): Ian Bailey, G. Gordon Gibson, Kathryn E. Plant, Mark Graham, Nick Plant
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0161922

Protein Profiling of Bladder Urothelial Cell Carcinoma
Cited by: 6
Author(s): Jinghai Hu, Fei Ye, Miao Cui, Peng Lee, Chengguo Wei, Yuanyuan Hao, Xiaoqing Wang, Yanbo Wang, Zhihua Lu, Matthew D. Galsky, Russell McBride, Li Wang, Dongwen Wang, Carlos Cordon‐Cardo, Wang Chun-xi, David Y. Zhang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0219615

Presenting new stimuli to study emotion: Development and validation of the Objects-on-Hands Picture Database
Cited by: 4
Author(s): Natália Lisandra Fernandes, Josefa N. S. Pandeirada, James S. Nairne
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0087502

AtWuschel Promotes Formation of the Embryogenic Callus in Gossypium hirsutum
Cited by: 48
Author(s): Wu Zheng, Xueyan Zhang, Zuoren Yang, Jiahe Wu, Fenglian Li, Lanling Duan, Chuanliang Liu, Lili Lu, Chaojun Zhang, Fuguang Li
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0244697

Let’s not be indifferent about robots: Neutral ratings on bipolar measures mask ambivalence in attitudes towards robots
Cited by: 9
Author(s): Julia G. Stapels, Friederike Anne Eyssel
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0004904

Comparative Transcriptional Profiling of Bacillus cereus Sensu Lato Strains during Growth in CO2-Bicarbonate and Aerobic Atmospheres
Cited by: 35
Author(s): Karla D. Passalacqua, Anjana Varadarajan, Benjamin Byrd, Nicholas H. Bergman
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0127028

Systemic Monocytic-MDSCs Are Generated from Monocytes and Correlate with Disease Progression in Breast Cancer Patients
Cited by: 111
Author(s): Caroline Bergenfelz, Anna-Maria Larsson, Kristoffer von Stedingk, Sofia K. Gruvberger-Saal, Kristina Aaltonen, Sara Jansson, Helena Jernström, Helena Janols, Marlene Wullt, Anders Bredberg, Lisa Rydén, Karin Leandersson
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0043464

Hmgb3 Is Regulated by MicroRNA-206 during Muscle Regeneration
Cited by: 37
Author(s): Simona Maciotta, Mirella Meregalli, Letizia Cassinelli, D. Parolini, Andrea Farini, Giulia Del Fraro, Francesco Gandolfi, Mattia Forcato, Sérgio Ferrari, Davide Gabellini, Silvio Bicciato, Giulio Cossu, Yvan Torrente
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0095157

Gene Expression Profiling Identifies Microphthalmia-Associated Transcription Factor (MITF) and Dickkopf-1 (DKK1) as Regulators of Microenvironment-Driven Alterations in Melanoma Phenotype
Cited by: 26
Author(s): Mariusz L. Hartman, Beata Talar, Muhammad Zaeem Noman, Anna Gajos-Michniewicz, Salem Chouaı̈b, Małgorzata Czyż
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0002360

The Genomic Analysis of Erythrocyte microRNA Expression in Sickle Cell Diseases
Cited by: 160
Author(s): Shaoyin Chen, Yulei Wang, Marilyn J. Telen, Jen‐Tsan Chi
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0031048

Insights into the Mutation-Induced HHH Syndrome from Modeling Human Mitochondrial Ornithine Transporter-1
Cited by: 54
Author(s): Jing‐Fang Wang, Kuo‐Chen Chou
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0038668

Selective Hyper-responsiveness of the Interferon System in Major Depressive Disorders and Depression Induced by Interferon Therapy
Cited by: 21
Author(s): Joerg F. Schlaak, Martin Trippler, Carolina Hoyo-Becerra, Yeşim Erim, Bernhard Kis, Bo Wang, Norbert Scherbaum, Guido Gerken
Software Mentions: 1
Published: almost 14 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566