cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0000323

Gene Expression Patterns in Pancreatic Tumors, Cells and Tissues
Cited by: 92
Author(s): Anson W. Lowe, Mari Olsen, Hao Ying, Sum P. Lee, Kyu Taek Lee, Xin Chen, Matt van de Rijn, Patrick O. Brown
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0128608

Neural Correlates of Emotional Interference in Social Anxiety Disorder
Cited by: 28
Author(s): Stephanie Boehme, Viktoria Ritter, Susan Tefikow, Ulrich Stangier, Bernhard Strauß, Wolfgang H. R. Miltner, Thomas Straube
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0022251

Examining the Effects of One- and Three-Dimensional Spatial Filtering Analyses in Magnetoencephalography
Cited by: 12
Author(s): Samuel Johnson, Garreth Prendergast, Mark Hymers, Gary Green
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0083495

Systematic Identification of Core Transcription Factors Mediating Dysregulated Links Bridging Inflammatory Bowel Diseases and Colorectal Cancer
Cited by: 3
Author(s): Yun Xiao, Huihui Fan, Yunpeng Zhang, Wei Xing, Yanyan Ping, Hongying Zhao, Chaohan Xu, Yiqun Li, Li Wang, Feng Li, Jing Hu, Teng Huang, Yanling Lv, Huan Ren, Xia Li
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0002655

Genes Differentially Expressed in Conidia and Hyphae of Aspergillus fumigatus upon Exposure to Human Neutrophils
Cited by: 106
Author(s): Janyce A. Sugui, H. Stanley Kim, Kol A. Zarember, Yun C. Chang, John I. Gallin, Willian C. Nierman, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0240186

Mitochondrial genomes of stick insects (Phasmatodea) and phylogenetic considerations
Cited by: 12
Author(s): Nan Song, Xinghao Li, Risong Na
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0075619

Variant Callers for Next-Generation Sequencing Data: A Comparison Study
Cited by: 137
Author(s): Xiangtao Liu, Shizhong Han, Zuoheng Wang, Joel Gelernter, Bao Zhu Yang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0095415

Classifying Different Emotional States by Means of EEG-Based Functional Connectivity Patterns
Cited by: 188
Author(s): You Yun Lee, Shulan Hsieh
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0184192

Effects of proteasome inhibitor MG-132 on the parasite Schistosoma mansoni
Cited by: 12
Author(s): Enyara Rezende Morais, Kátia C. Oliveira, Renato Graciano de Paula, Alice M.M. Ornelas, Érika B. C. Moreira, Fernanda Rafacho Badoco, Lizandra G. Magalhães, Sérgio Verjovski-Almeida, Vanderlei Rodrigues
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0101967

Genetic Variability and Population Divergence in the Rare Fritillaria tubiformis subsp. moggridgei Rix (Liliaceae) as Revealed by RAPD Analysis
Cited by: 16
Author(s): Marco Mucciarelli, Diana Ferrazzini, P. Belletti
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0122444

Integrating Solid-State NMR and Computational Modeling to Investigate the Structure and Dynamics of Membrane-Associated Ghrelin
Cited by: 13
Author(s): Gerrit Vortmeier, Stephanie H. DeLuca, Sylvia Els‐Heindl, Constance Chollet, Holger A. Scheidt, Annette G. Beck‐Sickinger, Jens Meiler, Daniel Huster
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0199508

Taste and odor preferences following Roux-en-Y surgery in humans
Cited by: 27
Author(s): Hannah D. Kittrell, William Graber, Evelyn Mariani, Krzysztof Czaja, A. Hajnal, Patricia M. Di Lorenzo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0241455

S-adenosyl methionine synthetase SAMS-5 mediates dietary restriction-induced longevity in Caenorhabditis elegans
Cited by: 5
Author(s): Chia Chang Chen, Chiao Yin Lim, Pin Jung Lee, Ao Lin Hsu, Tsui Ting Ching
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0197372

Small molecule inhibitors and CRISPR/Cas9 mutagenesis demonstrate that SMYD2 and SMYD3 activity are dispensable for autonomous cancer cell proliferation
Cited by: 44
Author(s): Michael J. Thomenius, Jennifer Totman, Darren M. Harvey, Lorna H. Mitchell, Thomas V. Riera, Kat Cosmopoulos, Alexandra R. Grassian, Christine Klaus, Megan Foley, Elizabeth A. Admirand, Haris Jahić, Christina R. Majer, Tim J. Wigle, Suzanne L. Jacques, Jodi Gureasko, Dorothy Brach, Trupti Lingaraj, Kip A. West, Sherri Smith, Nathalie Rioux, Nigel J. Waters, Cuyue Tang, Alejandra Raimondi, Michael J. Munchhof, James E. Mills, Scott Ribich, Margaret Porter Scott, Kevin W. Kuntz, William P. Janzen, Mikel P. Moyer, J. Joshua Smith, Richard Chesworth, Robert A. Copeland, P.A. Boriack-Sjodin
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0088217

pY RNA1-s2: A Highly Retina-Enriched Small RNA That Selectively Binds to Matrin 3 (Matr3)
Cited by: 16
Author(s): Fumiyoshi Yamazaki, Hyun Hee Kim, Pierre Lau, Cheol Kyu Hwang, P. Michael Iuvone, David C. Klein, Samuel Clokie
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0122483

Mapping Molecular Differences and Extracellular Matrix Gene Expression in Segmental Outflow Pathways of the Human Ocular Trabecular Meshwork
Cited by: 75
Author(s): Janice A. Vranka, Jeremy T. Bradley, Yong Yang, Kate E. Keller, Ted S. Acott
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0141979

Cytochrome P450 Oxidoreductase Influences CYP2B6 Activity in Cyclophosphamide Bioactivation
Cited by: 26
Author(s): Ibrahim El-Serafi, Parvaneh Afsharian, Ali Moshfegh, Manal M. Hassan, Ylva Terelius
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0073984

Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches
Cited by: 14
Author(s): Sri Devan Appasamy, Effirul Ikhwan Ramlan, Mohd Firdaus-Raih
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0039477

Bovine Polledness – An Autosomal Dominant Trait with Allelic Heterogeneity
Cited by: 111
Author(s): Ivica Međugorac, Doris Seichter, Alexander Graf, Ingolf Ruß, Helmut Blum, Karl Heinrich Göpel, Sophie Rothammer, M. Förster, Stefan Krebs
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0013596

Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding
Cited by: 1
Author(s): Young Ki Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0087268

Global Gene Expression Analysis Reveals a Link between NDRG1 and Vesicle Transport
Cited by: 24
Author(s): Hanne A. Askautrud, Elisabet Gjernes, Gjermund Gunnes, Marit Sletten, Douglas T. Ross, Anne Lise Børresen-Dale, Nina Iversen, Michael A. Tranulis, Eirik Frengen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0232928

Large EEG amplitude effects are highly similar across Necker cube, smiley, and abstract stimuli
Cited by: 11
Author(s): Ellen Joos, Anne Giersch, Lukas Hecker, Julia Schipp, Sven Heinrich, Ludger Tebartz van Elst, Jürgen Kornmeier
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0197082

Identification of a peptide inhibitor for the histone methyltransferase WHSC1
Cited by: 19
Author(s): Michael J. Morrison, P.A. Boriack-Sjodin, Kerren K. Swinger, Tim J. Wigle, D Sadalge, Kevin W. Kuntz, Margaret Porter Scott, William P. Janzen, Richard Chesworth, Kenneth W. Duncan, Darren M. Harvey, John W. Lampe, Lorna H. Mitchell, Robert A. Copeland
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0079413

Transcriptome Analysis of PPARγ Target Genes Reveals the Involvement of Lysyl Oxidase in Human Placental Cytotrophoblast Invasion
Cited by: 22
Author(s): N. Segond, Séverine A. Degrelle, Sarah Berndt, É. Clouqueur, Christine Rouault, Bruno Saubaméa, Philippe Dessen, Keith S. K. Fong, Katalin Csiszàr, Josette Badet, Danièle Évain-Brion, Thierry Fournier
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0006077

A Novel In Vitro Multiple-Stress Dormancy Model for Mycobacterium tuberculosis Generates a Lipid-Loaded, Drug-Tolerant, Dormant Pathogen
Cited by: 368
Author(s): Chirajyoti Deb, Chang-Muk Lee, Vinod S. Dubey, Jaiyanth Daniel, Bassam Abomoelak, Tatiana D. Sirakova, Santosh Pawar, Linda Rogers, Pappachan E. Kolattukudy
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0014143

Molecular Characterization of c-Abl/c-Src Kinase Inhibitors Targeted against Murine Tumour Progenitor Cells that Express Stem Cell Markers
Cited by: 18
Author(s): Thomas Kruewel, Silvia Schenone, Marco Radi, Giovanni Maga, Astrid Rohrbeck, Maurizio Botta, Jürgen Borlak
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0239980

Can we accurately predict where we look at paintings?
Cited by: 3
Author(s): Olivier Le Meur, Tugdual Le Pen, Rémi Cozot
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0065683

ToP: A Trend-of-Disease-Progression Procedure Works Well for Identifying Cancer Genes from Multi-State Cohort Gene Expression Data for Human Colorectal Cancer
Cited by: 13
Author(s): Feng-Hsiang Chung, Henry Hsin‐Chung Lee, Hoong-Chien Lee
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0033293

Functional Connectivity of Pain-Mediated Affect Regulation in Borderline Personality Disorder
Cited by: 81
Author(s): Inga Niedtfeld, Peter Kirsch, Lars Schulze, Sabine C. Herpertz, Martin Bohus, Christian Schmahl
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0219745

Severe acute malnutrition and mortality in children in the community: Comparison of indicators in a multi-country pooled analysis
Cited by: 31
Author(s): Catherine Schwinger, Michael Golden, Emmanuel Grellety, Dominique Roberfroid, Benjamin Guesdon
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0050663

Identifying Conserved and Novel MicroRNAs in Developing Seeds of Brassica napus Using Deep Sequencing
Cited by: 59
Author(s): Ana Paula Körbes, Ronei Dorneles Machado, Frank Guzmán, Maurício Pereira Almerão, Luiz Felipe Valter de Oliveira, Guilherme Loss-Morais, Andreia Carina Turchetto‐Zolet, Alexandro Cagliari, Felipe dos Santos Maraschin, Márcia Margis‐Pinheiro, Rogério Margis
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0147500

Characterization of Heterogeneous Prostate Tumors in Targeted Pten Knockout Mice
Cited by: 12
Author(s): Hanneke Korsten, Angelique C. J. Ziel-van der Made, Wytske M. van Weerden, Theodorus H. van der Kwast, Jan Trapman, Petra W. van Duijn
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0250283

Metagenomic insights into mixotrophic denitrification facilitated nitrogen removal in a full-scale A2/O wastewater treatment plant
Cited by: 8
Author(s): Shulei Liu, Yasong Chen, Lin Xiao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0035425

Effects of DHA- Rich n-3 Fatty Acid Supplementation on Gene Expression in Blood Mononuclear Leukocytes: The OmegAD Study
Cited by: 74
Author(s): Inger Vedin, Tommy Cederholm, Yvonne Freund‐Levi, Hans Basun, Anita Garlind, Gerd Faxén Irving, Maria Eriksdotter, Lars‐Olof Wahlund, Ingrid Dahlman, Jan Palmblad
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0005992

Identification of Global Transcriptional Dynamics
Cited by: 16
Author(s): Eric Yang, Richard R. Almon, Debra C. DuBois, W J Jusko, Ioannis P. Androulakis
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0047537

Clinical Relevance of Loss of 11p15 in Primary and Metastatic Breast Cancer: Association with Loss of PRKCDBP Expression in Brain Metastases
Cited by: 20
Author(s): Harriet Wikman, Bettina Sielaff-Frimpong, Jolanthe Kropidlowski, Isabell Witzel, Karin Milde‐Langosch, Guido Sauter, Manfred Westphal, Katrin Lamszus, Klaus Pantel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0001479

Genomewide Expression Analysis in Zebrafish mind bomb Alleles with Pancreas Defects of Different Severity Identifies Putative Notch Responsive Genes
Cited by: 15
Author(s): Ashok N. Hegde, Nick Chuanxin Qiu, Xuehui Qiu, Soo Yei Ho, Kenny Qi-Ye Tay, Joshy George, Felicia Ng, Kunde Ramamoorthy Govindarajan, Zhiyuan Gong, Sinnakaruppan Mathavan, Yun-Jin Jiang
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0054918

A Comparison of Ku0063794, a Dual mTORC1 and mTORC2 Inhibitor, and Temsirolimus in Preclinical Renal Cell Carcinoma Models
Cited by: 53
Author(s): Hao Zhang, Dror Berel, Yanping Wang, Ping Li, Neil A. Bhowmick, Robert A. Figlin, Hyung L. Kim
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0244964

Harmonic organisation conveys both universal and culture-specific cues for emotional expression in music
Cited by: 24
Author(s): George Athanasopoulos, Tuomas Eerola, Imre Lahdelma, Μάξιμος Καλιακάτσος-Παπακώστας
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0033201

MicroRNA Expression Is Down-Regulated and Reorganized in Prefrontal Cortex of Depressed Suicide Subjects
Cited by: 270
Author(s): Neil R. Smalheiser, Giovanni Lugli, Hooriyah S. Rizavi, Vetle I. Torvik, Gustavo Turecki, Yogesh K. Dwivedi
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0182588

HspB5 correlates with poor prognosis in colorectal cancer and prompts epithelial-mesenchymal transition through ERK signaling
Cited by: 18
Author(s): Qinghua Li, Yanlan Wang, Yuexing Lai, Ping Xu, Zhiwen Yang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0139542

Pathos & Ethos: Emotions and Willingness to Pay for Tobacco Products
Cited by: 14
Author(s): Francesco Bogliacino, Cristiano Codagnone, Giuseppe Veltri, Amitav Chakravarti, Pietro Ortoleva, George Gaskell, Andriy Ivchenko, Francisco Lupiáñez-Villanueva, Francesco Mureddu, Caroline Rudisill
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0121887

Catecholamines Promote Actinobacillus pleuropneumoniae Growth by Regulating Iron Metabolism
Cited by: 14
Author(s): Lü Li, Zhaohui Chen, Weicheng Bei, Zhipeng Su, Qi Huang, Liang Zhang, Huanchun Chen, Rui Zhou
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0254940

Sports ingroup love does not make me like the sponsor’s beverage but gets me buying it
Cited by: 0
Author(s): Sara Franco, Ana María Abreu, Rui Biscaia, Sandra Gama
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0114515

Meet OLAF, a Good Friend of the IAPS! The Open Library of Affective Foods: A Tool to Investigate the Emotional Impact of Food in Adolescents
Cited by: 44
Author(s): Laura Miccoli, R. Delgado, Sonia Rodríguez‐Ruiz, Pedro Guerra, Eduardo García-Mármol, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0046247

Selecting Biological Meaningful Environmental Dimensions of Low Discrepancy among Ranges to Predict Potential Distribution of Bean Plataspid Invasion
Cited by: 16
Author(s): Gengping Zhu, Matthew J. Petersen, Wenjun Bu
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0113925

Insights into Molecular Features of Venerupis decussata Oocytes: A Microarray-Based Study
Cited by: 5
Author(s): Marianna Pauletto, Massimo Milan, Joana Sousa, Arnaud Huvet, Sandra Joaquim, Domitília Matias, Alexandra Leitão, Tomaso Patarnello, Luca Bargelloni
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0064963

Elevational Distribution and Conservation Biogeography of Phanaeine Dung Beetles (Coleoptera: Scarabaeinae) in Bolivia
Cited by: 38
Author(s): Sebastián K. Herzog, A. Caroli Hamel‐Leigue, Trond H. Larsen, Darren J. Mann, Rodrigo W. Soria-Auza, Bruce D. Gill, W. D. Edmonds, Sacha Spector
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0027027

Testing the Water–Energy Theory on American Palms (Arecaceae) Using Geographically Weighted Regression
Cited by: 32
Author(s): Wolf L. Eiserhardt, Stine Bjorholm, Jens‐Christian Svenning, Thiago F. Rangel, Henrik Balslev
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0043571

Using Activity-Related Behavioural Features towards More Effective Automatic Stress Detection
Cited by: 68
Author(s): Dimitrios Giakoumis, Anastasios Drosou, Pietro Cipresso, Dimitrios Tzovaras, George Hassapis, Andrea Gaggioli, Giuseppe Riva
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0075012

Differentially Expressed MicroRNAs in Chondrocytes from Distinct Regions of Developing Human Cartilage
Cited by: 44
Author(s): Audrey McAlinden, Nobish Varghese, Louisa Wirthlin, Li‐Wei Chang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0201784

Genetic parameters and quantitative trait loci analysis associated with body size and timing at metamorphosis into glass eels in captive-bred Japanese eels (Anguilla japonica)
Cited by: 9
Author(s): Kazuharu Nomura, Atushi Fujiwara, Yoshiaki Iwasaki, Issei Nishiki, Aiko Matsuura, Akiyuki Ozaki, Ryusuke Sudo, Hideki Tanaka
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0010776

In Vivo Identification of Solar Radiation-Responsive Gene Network: Role of the p38 Stress-Dependent Kinase
Cited by: 12
Author(s): Nicolas Mouchet, H. Adamski, R. Bouvet, Sébastien Corre, Yann Courbebaisse, Éric Watier, Jean Mosser, Christophe Chesné, Marie‐Dominique Galibert
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0005805

Gene Expression in Peripheral Blood Leukocytes in Monozygotic Twins Discordant for Chronic Fatigue: No Evidence of a Biomarker
Cited by: 24
Author(s): Andrea Byrnes, Andreas Jacks, Karin Dahlman-Wright, Birgitta Evengård, Fred A. Wright, Nancy L. Pedersen, Patrick F. Sullivan
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0015590

Olfactory Stem Cells, a New Cellular Model for Studying Molecular Mechanisms Underlying Familial Dysautonomia
Cited by: 45
Author(s): Nathalie Boone, Béatrice Loriod, Aurélie Bergon, Oualid Sbai, Christine Formisano-Tréziny, Jean Gabert, Michel Khrestchatisky, Catherine Nguyen, François Féron, Felicia B. Axelrod, El Chérif Ibrahim
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0020557

Predicting Protein Folds with Fold-Specific PSSM Libraries
Cited by: 8
Author(s): Young Ki Hong, Sree V. Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian B. van Rossum, Randen L. Patterson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0065319

The Dynamics of Soybean Leaf and Shoot Apical Meristem Transcriptome Undergoing Floral Initiation Process
Cited by: 42
Author(s): Chui Eng Wong, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0170245

Weakening self-control biases the emotional evaluation of appetitive cues
Cited by: 7
Author(s): Christian D. Wiesner, Christoph Lindner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0057172

Autophagy and Cellular Senescence Mediated by Sox2 Suppress Malignancy of Cancer Cells
Cited by: 43
Author(s): Yong‐Yeon Cho, Dong Joon Kim, Hye Suk Lee, Chul Ho Jeong, Eun Jin Cho, Myong Ok Kim, Sun‐Sig Byun, Kun Yeong Lee, Ke Yao, Andria Carper, Alyssa Langfald, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0061296

A Beamformer Analysis of MEG Data Reveals Frontal Generators of the Musically Elicited Mismatch Negativity
Cited by: 30
Author(s): Claudia Lappe, Olaf Steinsträter, Christo Pantev
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0007856

Correlating Global Gene Regulation to Angiogenesis in the Developing Chick Extra-Embryonic Vascular System
Cited by: 60
Author(s): Sophie Javerzat, Mélanie Franco, John Herbert, N. Platonova, Anne-Lise Peille, Véronique Pantesco, John De Vos, Saïd Assou, Roy Bicknell, Andréas Bikfalvi, Martin Hagedorn
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0059636

Androgen Inhibits Abdominal Fat Accumulation and Negatively Regulates the PCK1 Gene in Male Chickens
Cited by: 25
Author(s): Jinlin Duan, Fan Su, Yi Shao, Junying Li, Ling Yao, Ke Teng, Hongwei Li, Changxin Wu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0018613

Differential Glucose-Regulation of MicroRNAs in Pancreatic Islets of Non-Obese Type 2 Diabetes Model Goto-Kakizaki Rat
Cited by: 160
Author(s): Jonathan L.S. Esguerra, Caroline Bolmeson, Corrado Cilio, Lena Eliasson
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0006213

Involvement of the Post-Transcriptional Regulator Hfq in Yersinia pestis Virulence
Cited by: 90
Author(s): Jing Geng, Yajun Song, Lei Yang, Yanyan Feng, Yefeng Qiu, Gang Li, Jingyu Guo, Yujing Bi, Yi Qu, Wang Wang, Xiaoyi Wang, Zhaobiao Guo, Ruifu Yang, Yanping Han
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0082006

ROS Stress Resets Circadian Clocks to Coordinate Pro-Survival Signals
Cited by: 81
Author(s): Teruya Tamaru, Mitsuru Hattori, Yasuharu Ninomiya, Genki Kawamura, Guillaume Varès, Kousuke Honda, Durga Prasad Mishra, Bing Wang, Ivor J. Benjamin, Paolo Sassone‐Corsi, Toshio Ozawa, Ken Takamatsu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0030840

Progesterone Inhibits Epithelial-to-Mesenchymal Transition in Endometrial Cancer
Cited by: 63
Author(s): Paul H. van der Horst, Yong-Yi Wang, Ingrid Vandenput, Liesbeth C. Kühne, Patricia C. Ewing, Wilfred F. J. van IJcken, Marten van der Zee, Frédéric Amant, Curt W. Burger, Leen J. Blok
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008189

Integrative Discovery of Epigenetically Derepressed Cancer Testis Antigens in NSCLC
Cited by: 64
Author(s): Chad A. Glazer, Ian Smith, Michael F. Ochs, Shahnaz Begum, William H. Westra, Steven S. Chang, Wenyue Sun, Sheetal Bhan, Zubair Khan, Steven A. Ahrendt, Joseph A. Califano
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0109611

The Long-HER Study: Clinical and Molecular Analysis of Patients with HER2+ Advanced Breast Cancer Who Become Long-Term Survivors with Trastuzumab-Based Therapy
Cited by: 23
Author(s): Angelo Gámez‐Pozo, Ramón María Pérez Carrión, Luis Manso, Carmen Crespo, C. Mendiola, Rocío López-Vacas, Julia Berges-Soria, Isabel Álvarez López, Mireia Margelı́, Juan Lucas Bayo Calero, Xavier Farré, Ana Santaballa, Eva Ciruelos, Renata Afonso, Juan Lao, G. Catalán, J Gallego, José Miramón López, F.J. Salvador Bofill, Manuel Ruíz-Borrego, Enrique Espinosa, Juan Ángel Fresno Vara, Pilar Zamora
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0031246

Potential Geographic Distribution of Brown Marmorated Stink Bug Invasion (Halyomorpha halys)
Cited by: 151
Author(s): Gengping Zhu, Wenjun Bu, Yubao Gao, Guoqing Liu
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0043334

Spatial Genetic Structure in Natural Populations of Phragmites australis in a Mosaic of Saline Habitats in the Yellow River Delta, China
Cited by: 20
Author(s): Lexuan Gao, Shaoqing Tang, Liqiong Zhuge, Ming Nie, Zhu Zhu, Bo Li, Ji Hyun Yang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0098069

Switch in FOXA1 Status Associates with Endometrial Cancer Progression
Cited by: 22
Author(s): Ingvild L. Tangen, Camilla Krakstad, Mari K. Halle, Henrica M.J. Werner, Anne Margrete Øyan, Kanthida Kusonmano, Kjell Petersen, Karl‐Henning Kalland, Lars A. Akslen, Jone Trovik, Antoni Hurtado, Helga B. Salvesen
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0022730

Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1)
Cited by: 48
Author(s): Ankit Gupta, Pruthvi Nagilla, Hai-Son Le, Coulton Bunney, Courtney Zych, Anbupalam Thalamuthu, Ziv Bar‐Joseph, Sinnakaruppan Mathavan, Velpandi Ayyavoo
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0006527

Apoptosis of CD4+CD25high T Cells in Type 1 Diabetes May Be Partially Mediated by IL-2 Deprivation
Cited by: 74
Author(s): Parthav Jailwala, Jill Waukau, Sanja Glišić, Swapan Kumar Jana, S.J. Ehlenbach, Martin J. Hessner, Ramin Alemzadeh, Shigemi Matsuyama, Purushottam W. Laud, Xujing Wang, Soumitra Ghosh
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0111589

Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae
Cited by: 4
Author(s): Sandra Mota, Neide Vieira, Sónia Barbosa, Thierry Delaveau, Claire Torchet, Agnès Le Saux, Mathilde Garcia, Ana Sofia Pereira, Sophie Lemoine, Fanny Coulpier, Xavier Darzacq, Lionel Bénard, Margarida Casal, Frédéric Devaux, Sandra Paiva
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0025195

Does Lateral Transmission Obscure Inheritance in Hunter-Gatherer Languages?
Cited by: 69
Author(s): Claire Bowern, Patience Epps, Russell D. Gray, Jane H. Hill, Keith Hunley, Patrick McConvell, Jason Zentz
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0070096

Downregulation of Steroid Receptor Coactivator-2 Modulates Estrogen-Responsive Genes and Stimulates Proliferation of MCF-7 Breast Cancer Cells
Cited by: 23
Author(s): Ingvild S. Fenne, Thomas Helland, Marianne Hauglid Flågeng, Simon N. Dankel, Gunnar Mellgren
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0045839

Genome-Wide Expression Profiling Identifies Type 1 Interferon Response Pathways in Active Tuberculosis
Cited by: 193
Author(s): Tom H. M. Ottenhoff, Ranjeeta Hari Dass, Ninghan Yang, Mingzi M. Zhang, Hazel E. E. Wong, Edhyana Sahiratmadja, Chiea‐Chuen Khor, Bachti Alisjahbana, Reinout van Crevel, Sangkot Marzuki, Mark Seielstad, Esther van de Vosse, Martin L. Hibberd
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0076459

A SNP Based High-Density Linkage Map of Apis cerana Reveals a High Recombination Rate Similar to Apis mellifera
Cited by: 15
Author(s): Yuan Shi, Liang Sun, Huang Zhi, Xiao Wu, Yangyang Zhu, Hua Jun Zheng, Zhi Zeng
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0062909

Complex Genetic Architecture of Cardiac Disease in a Wild Type Inbred Strain of Drosophila melanogaster
Cited by: 5
Author(s): Zhi Zhang, Benjamin Hsieh, Amy R. Poe, Julie Anderson, Karen Ocorr, Greg Gibson, Rolf Bodmer
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0201742

Glial responses during epileptogenesis in Mus musculus point to potential therapeutic targets
Cited by: 19
Author(s): Georgia Kalozoumi, Olga V. Kel-Margoulis, Elizabeth Vafiadaki, David Greenberg, Hélène Bernard, Hermona Soreq, Antoine Depaulis, Despina Sanoudou
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0185281

Identification of a novel frameshift mutation in the ILDR1 gene in a UAE family, mutations review and phenotype genotype correlation
Cited by: 6
Author(s): Abdelaziz Tlili, Abdullah Fahd Al Mutery, Mona Mahfood, Walaa Kamal Eldin Mohamed, Khalid Bajou
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0000116

MiRNA-Directed Regulation of VEGF and Other Angiogenic Factors under Hypoxia
Cited by: 609
Author(s): Hua Zhong, Qing Lv, Michael Fraser, Chung-Kwun Amy Wong, Guoping Cai, Dayong Gu, Yanhong Ji, Chen Zhao, Jifeng Wang, Burton B. Yang, Yaou Zhang
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0197333

Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing
Cited by: 52
Author(s): Sabine Hellwig, David A. Nix, Keith M. Gligorich, John O’Shea, Alun Thomas, Carrie L. Fuertes, Preetida J. Bhetariya, Gábor Marth, Mary P. Bronner, Hunter R. Underhill
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0182272

Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data
Cited by: 19
Author(s): Bo Young Kim, Jung Hoon Park, Hye Yeong Jo, Soo Kyung Koo, Mi-Hyun Park
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0151224

Generation of Antigen Microarrays to Screen for Autoantibodies in Heart Failure and Heart Transplantation
Cited by: 16
Author(s): Andrzej Chruscinski, Flora Huang, Albert Nguyen, Jocelyn Lioe, Laura C. Tumiati, Stella Kozuszko, Kathryn Tinckam, Vivek Rao, Shannon Dunn, Michael A. Persinger, Gary Levy, Heather J. Ross
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0005212

The Yeast PNC1 Longevity Gene Is Up-Regulated by mRNA Mistranslation
Cited by: 19
Author(s): Raquel M. Silva, Iven C. N. Duarte, João A. Paredes, Tatiana Lima-Costa, Michel Perrot, Hélian Boucherie, Brian J. Goodfellow, Ana Catarina Gomes, Denisa D. Mateus, Gabriela Moura, Manuel A. S. Santos
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0223881

Real vs. immersive-virtual emotional experience: Analysis of psycho-physiological patterns in a free exploration of an art museum
Cited by: 46
Author(s): Javier Marín‐Morales, Juan Luis Higuera-Trujillo, Alberto Greco, Jaime Guixeres, Carmen Llinares, Claudio Gentili, Enzo Pasquale Scilingo, Mariano Alcañíz, Gaetano Valenza
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0115241

Functional and Evolutionary Significance of Human MicroRNA Seed Region Mutations
Cited by: 35
Author(s): Christopher G. Hill, Neda Jabbari, Lilya V. Matyunina, John F. McDonald
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0034185

Deficiency in Nucleotide Excision Repair Family Gene Activity, Especially ERCC3, Is Associated with Non-Pigmented Hair Fiber Growth
Cited by: 7
Author(s): Man Yu, Robert H. Bell, Maggie M. Ho, Gph Leung, Anne Haegert, Nicholas Carr, Jerry Shapiro, Kevin J. McElwee
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0004706

In Silico Simulation of Corticosteroids Effect on an NFkB- Dependent Physicochemical Model of Systemic Inflammation
Cited by: 63
Author(s): Panagiota T. Foteinou, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0040476

Molecular Characterization of Circulating Tumor Cells in Human Metastatic Colorectal Cancer
Cited by: 78
Author(s): Jorge Barbazán, Lorena Alonso-Alconada, Laura Muinelo‐Romay, María Vieito, Alicia Abalo, Marta Alonso-Nocelo, Sonia Candamio, Elena Gallardo, B. Díaz Fernández, Ihab Abdulkader, María de los Ángeles Casares, Antonio Gómez-Tato, Rafael López‐López, Miguel Abal
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0058471

The miR-183/Taok1 Target Pair Is Implicated in Cochlear Responses to Acoustic Trauma
Cited by: 34
Author(s): Minal Patel, Qunfeng Cai, Dalian Ding, Richard Salvi, Zihua Hu, Bo Hu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0071989

Functional Comparison between Genes Dysregulated in Ulcerative Colitis and Colorectal Carcinoma
Cited by: 7
Author(s): Wenyuan Zhao, Lishuang Qi, Qing Yao, Hongwei Wang, Beibei Chen, Ruiping Wang, Yunyan Gu, Chunyang Liu, Chenguang Wang, Zheng Guo
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0235259

Recovery rate and its predictors among children with severe acute malnutrition in Addis Ababa, Ethiopia: A retrospective cohort study
Cited by: 4
Author(s): Zebenay Workneh Bitew, Animut Alebel, Teshager Worku, Ayinalem Alemu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0009189

A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems
Cited by: 39
Author(s): Tim Hohm, Eckart Zitzler, Rüdiger Simon
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0058235

Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
Cited by: 74
Author(s): Midori Kato‐Maeda, Christine Ho, Ben Passarelli, Niaz Banaei, Jennifer Grinsdale, Laura L Flores, J.P. Anderson, Megan Murray, Graham Rose, L. Masae Kawamura, Nader Pourmand, Muhammad Tariq, Sébastien Gagneux, Philip C. Hopewell
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0155901

Validation of Novel Biomarkers for Prostate Cancer Progression by the Combination of Bioinformatics, Clinical and Functional Studies
Cited by: 40
Author(s): Saeid Alinezhad, Riina Minna Väänänen, Jesse Mattsson, Yifeng Li, Terhi Tallgrén, Natalia Tong Ochoa, Anders Bjartell, Malin Åkerfelt, Pekka Taimen, Peter J. Boström, Kim Pettersson, Matthias Nees
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0008136

Gender Differences in a Drosophila Transcriptomic Model of Chronic Pentylenetetrazole Induced Behavioral Deficit
Cited by: 7
Author(s): Abhay Sharma, Farhan Mohammad, Priyanka Singh
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0059722

High-Throughput Carrier Screening Using TaqMan Allelic Discrimination
Cited by: 25
Author(s): Anastasia Fedick, Jing Su, Chaim Jalas, Lesley E. Northrop, Batsal Devkota, Josef Ekstein, Nathan R. Treff
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0074140

Sporadic Colorectal Cancer Development Shows Rejuvenescence Regarding Epithelial Proliferation and Apoptosis
Cited by: 10
Author(s): Katalin Leiszter, Orsolya Galamb, Ferenc Sípos, Tibor Krenács, Gábor Veres, Barnabás Wichmann, Alexandra Kalmár, Árpád V. Patai, Kinga Tóth, Gábor Valcz, Béla Molnár, Zsolt Tulassay
Software Mentions: 1
Published: almost 13 years ago

Projects: cran: SAM

Science Score: 85/100

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Penalties:

Papers Mentioning SAM 4,566