Projects: cran: SAM
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SAM
Sparse Additive Modelling
9 versions
Latest release: almost 5 years ago
4 dependent packages
341 downloads last month
Science Score: 85/100
Starting Score: 100 points
Bonuses:
Penalties:
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-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (85)
Papers Mentioning SAM 4,566
10.1016/j.ccr.2007.02.015
The Differentiation and Stress Response Factor XBP-1 Drives Multiple Myeloma PathogenesisCited by: 354
Author(s): Daniel R. Carrasco, Kumar Sukhdeo, Marina Protopopova, Raktim Sinha, Miriam Enos, Daniel E. Carrasco, Zheng Ma, Mala Mani, Joel M. Henderson, Geraldine S. Pinkus, Nikhil C. Munshi, James W. Horner, Elena Ivanova, Alexei Protopopov, Kenneth C. Anderson, Giovanni Tonon, Ronald A. DePinho
Software Mentions: 1
Published: about 19 years ago
10.1186/1475-2867-11-9
A 6-gene signature identifies four molecular subgroups of neuroblastomaCited by: 27
Author(s): Frida Abel, Daniel Dalevi, Maria Nethander, Rebecka Jörnsten, Katleen De Preter, Joëlle Vermeulen, Raymond L. Stallings, Per Kogner, John M. Maris, Staffan Nilsson
Software Mentions: 1
Published: over 15 years ago
10.1186/s12935-018-0547-6
Identification of four differentially methylated genes as prognostic signatures for stage I lung adenocarcinomaCited by: 15
Author(s): Weiming Luo, Zheng-Yu Wang, Zhang Xin
Software Mentions: 1
Published: about 8 years ago
10.1186/s12935-021-02127-z
Allele frequency deviation (AFD) as a new prognostic model to predict overall survival in lung adenocarcinoma (LUAD)Cited by: 3
Author(s): Aisha Al-Dherasi, Yuwei Liao, Sultan Al-Mosaib, Rulin Hua, Yichen Wang, Ying Yu, Yu Zhang, Xuehong Zhang, Raeda Jalayta, Haithm Mousa, Abdullah Al-Danakh, Fawze Alnadari, Marwan Almoiliqy, Salem Baldi, Leming Shi, Dekang Lv, Chi Kong Li, Quentin Liu
Software Mentions: 1
Published: almost 5 years ago
10.1002/cam4.1672
Molecular profiles of tumor contrast enhancement: A radiogenomic analysis in anaplastic gliomasCited by: 9
Author(s): Xing Liu, Yiming Li, Zimin Sun, Shaowu Li, Kai Wang, Xing Fan, Yuqing Liu, Lei Wang, Yinyan Wang, Tao Jiang
Software Mentions: 1
Published: almost 8 years ago
10.1002/cam4.1537
A regulatory mutant on <i><scp>TRIM</scp>26</i> conferring the risk of nasopharyngeal carcinoma by inducing low immune responseCited by: 12
Author(s): Xiaoming Lyu, Xiaowei Zhu, Manli Zhao, Xianbo Zuo, Zhong-Xi Huang, Xiao Liu, Tao Jiang, Xu Yang, Xin Li, Xiaobing Long, Jianguo Wang, Jinbang Li, Mingyu Han, Shuang Wang, Tengfei Liu, Bo Zhang, Tao Sun, Zhi Cheng, Mo-Chang Qiu, Lei Dong, Liduan Zheng, Longcheng Zhang, Jiahong Wang, Gan-Guan Wei, Kangde Yao, Qian Wang, Hou-Feng Zheng
Software Mentions: 1
Published: almost 8 years ago
10.1186/s40170-018-0177-4
Metabolic characterization of isocitrate dehydrogenase (IDH) mutant and IDH wildtype gliomaspheres uncovers cell type-specific vulnerabilitiesCited by: 51
Author(s): Matthew C. Garrett, Jantzen Sperry, Daniel Braas, Yan Wang, Thuc Le, Jack Mottahedeh, Kirsten Ludwig, Ascia Eskin, Yue Qin, Rachelle Levy, Joshua J. Breunig, Frank Pajonk, Thomas G. Graeber, Caius G. Radu, Heather R. Christofk, Robert M. Prins, Albert Lai, Linda M. Liau, Giovanni Coppola, Harley I. Kornblum
Software Mentions: 1
Published: about 8 years ago
10.1155/2012/839837
MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate CancerCited by: 26
Author(s): Mohammed Alshalalfa
Software Mentions: 1
Published: over 13 years ago
10.1186/s40170-016-0152-x
Metabolic clusters of breast cancer in relation to gene- and protein expression subtypesCited by: 56
Author(s): Tonje Husby Haukaas, Leslie R. Euceda, Guro F. Giskeødegård, Santosh Lamichhane, Marit Krohn, Sandra Jernström, Miriam Ragle Aure, Ole Christian Lingjærde, Ellen Schlichting, Øystein Garred, Eldri Undlien Due, Gordon B. Mills, Kristine Kleivi Sahlberg, Anne‐Lise Børresen‐Dale, Tone Frost Bathen
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13021-014-0009-y
A wood density and aboveground biomass variability assessment using pre-felling inventory data in Costa RicaCited by: 5
Author(s): Sienna Svob, J. Pablo Arroyo‐Mora, Margaret Kalácska
Software Mentions: 1
Published: over 11 years ago
10.1155/2012/858562
Cardiac Responses during Picture Viewing in Young Male Patients with SchizophreniaCited by: 3
Author(s): Roelie Hempel, Julian F. Thayer, Christian Röder, H.G. van Steenis, Nico J.M. van Beveren, Joke H.M. Tulen
Software Mentions: 1
Published: over 13 years ago
10.1186/1476-7120-6-3
Exercise-induced intra-ventricular gradients as a frequent potential cause of myocardial ischemia in cardiac syndrome X patientsCited by: 14
Author(s): Carlos Cotrim, Ana G. Almeida, Manuel Carrageta
Software Mentions: 1
Published: over 18 years ago
10.1186/1476-7120-11-26
Clinical applications of exercise stress echocardiography in the treadmill with upright evaluation during and after exerciseCited by: 14
Author(s): Carlos Cotrim, Isabel João, Paula Fazendas, Ana Rita Almeida, Luís Rocha Lopes, Bruno Stuart, Inês Cruz, Daniel Caldeira, María José Loureiro, Gonçalo Morgado, Hélder Pereira
Software Mentions: 1
Published: almost 13 years ago
10.1186/1476-7120-5-6
A new technique for assessing arterial pressure wave forms and central pressure with tissue DopplerCited by: 14
Author(s): Brian Haluska, Leanne Jeffriess, P. Mottram, Stéphane Carlier, Thomas H. Marwick
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2105-12-S13-S15
Finding consistent disease subnetworks across microarray datasetsCited by: 39
Author(s): Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
Software Mentions: 1
Published: over 14 years ago
10.1038/leu.2013.367
Excess congenital non-synonymous variation in leukemia-associated genes in MLL− infant leukemia: a Children’s Oncology Group reportCited by: 33
Author(s): Mark C. Valentine, Amy M. Linabery, Sara E. Chasnoff, Andrew Hughes, Cates Mallaney, Nicolás Fuster Sánchez, Joseph Giacalone, Nyla A. Heerema, Joanne M. Hilden, Logan G. Spector, Julie A. Ross, Todd E. Druley
Software Mentions: 1
Published: over 12 years ago
10.3390/life11060539
Origin of Life on Mars: Suitability and OpportunitiesCited by: 14
Author(s): B. C. Clark, Vera M. Kolb, A. Steele, Christopher H. House, N. Lanza, P. J. Gasda, S. J. VanBommel, H. E. Newsom, Jesús Martínez‐Frías
Software Mentions: 1
Published: almost 5 years ago
10.1186/1471-2105-10-43
An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filtersCited by: 17
Author(s): Qingbo Li, Bryan A. P. Roxas
Software Mentions: 1
Published: over 17 years ago
10.3390/life8040056
Catalytic/Protective Properties of Martian Minerals and Implications for Possible Origin of Life on MarsCited by: 31
Author(s): Teresa Fornaro, A. Steele, J. R. Brucato
Software Mentions: 1
Published: over 7 years ago
10.3390/life11080863
Enhanced Expression of Thaumatin-like Protein Gene (LeTLP1) Endows Resistance to Trichoderma atroviride in Lentinula edodesCited by: 6
Author(s): Xiaolong Ma, Xiaolin Fan, Jinjie Wang, Ruiping Xu, Lianlian Yan, Yan Zhou, Yuhua Gong, Yang Xiao
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms19030853
Impairment of Meristem Proliferation in Plants Lacking the Mitochondrial Protease AtFTSH4Cited by: 10
Author(s): Alicja Dołzbłasz, Edyta M. Gola, Katarzyna Sokołowska, Elwira Smakowska-Luzan, Adriana Twardawska, Hanna Janska
Software Mentions: 1
Published: about 8 years ago
10.26508/lsa.201800228
Mitochondrial acetyl-CoA reversibly regulates locus-specific histone acetylation and gene expressionCited by: 30
Author(s): Oswaldo A. Lozoya, Tianyuan Wang, Dagoberto Grenet, Taylor C. Wolfgang, Mack Sobhany, Douglas Ganini da Silva, Gonzalo Riadi, Navdeep S. Chandel, Richard P. Woychik, Janine H. Santos
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2105-12-305
IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq dataCited by: 27
Author(s): Hyunsoo Kim, Yingtao Bi, Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri
Software Mentions: 1
Published: almost 15 years ago
10.1038/s41377-021-00632-4
Nano-precision metrology of X-ray mirrors with laser speckle angular measurementCited by: 8
Author(s): Hongchang Wang, Simone Moriconi, Kawal Sawhney
Software Mentions: 1
Published: over 4 years ago
10.1186/s12936-019-2771-5
Hospital-derived antibody profiles of malaria patients in Southwest IndiaCited by: 8
Author(s): Apoorva Venkatesh, Aarti Jain, Huw Davies, Ligia Periera, Jennifer Maki, Edwin Gomes, Philip L. Felgner, Sanjeeva Srivastava, Swati Patankar, Pradipsinh K. Rathod
Software Mentions: 1
Published: about 7 years ago
10.1186/1475-2875-10-242
Global gene expression profiling of Plasmodium falciparum in response to the anti-malarial drug pyronaridineCited by: 14
Author(s): Kanyanan Kritsiriwuthinan, Sastra Chaotheing, Philip Shaw, Chayaphat Wongsombat, Porntip Chavalitshewinkoon-Petmitr, Sumalee Kamchonwongpaisan
Software Mentions: 1
Published: almost 15 years ago
10.3390/md9091566
NMR-Based Metabolomic Investigations on the Differential Responses in Adductor Muscles from Two Pedigrees of Manila Clam Ruditapes philippinarum to Cadmium and ZincCited by: 29
Author(s): Huifeng Wu, Xiaoli Liu, Jianmin Zhao, Junbao Yu
Software Mentions: 1
Published: over 14 years ago
10.3390/md15020040
Short-Chain Chitin Oligomers: Promoters of Plant GrowthCited by: 70
Author(s): Alexander J. Winkler, José Alfonso Domínguez Núñez, Inmaculada Aranaz, César Poza‐Carrión, Katrina M. Ramonell, Shauna Somerville, Marta Berrocal-Lobo
Software Mentions: 1
Published: over 9 years ago
10.3390/ma13020455
The Influence of the Internal Forces of the Buckling Modes on the Load-Carrying Capacity of Composite Medium-Length Beams under BendingCited by: 17
Author(s): Monika Zaczynska, Zbigniew Kołakowski
Software Mentions: 1
Published: over 6 years ago
10.3390/ma14133468
Eigenproblem Versus the Load-Carrying Capacity of Hybrid Thin-Walled Columns with Open Cross-Sections in the Elastic RangeCited by: 0
Author(s): Zbigniew Kołakowski, Andrzej Teter
Software Mentions: 1
Published: almost 5 years ago
10.3390/ma13153314
Catastrophic Influence of Global Distortional Modes on the Post-Buckling Behavior of Opened ColumnsCited by: 5
Author(s): Andrzej Teter, Zbigniew Kołakowski
Software Mentions: 1
Published: almost 6 years ago
10.3390/ma13112567
Multi-Mode Buckling Analysis of FGM Channel Section BeamsCited by: 5
Author(s): Monika Zaczynska, Filip Kaźmierczyk
Software Mentions: 1
Published: almost 6 years ago
10.3390/ma11071152
Elasto-Plastic Mechanical Properties and Failure Mechanism of Innovative Ti-(SiCf/Al3Ti) Laminated Composites for Sphere-Plane Contact at the Early Stage of Penetration ProcessCited by: 11
Author(s): Jingchuan Liu, Lan Zhang, Fengchun Jiang, Mengqi Zhang, Liquan Wang, Feihong Yun
Software Mentions: 1
Published: almost 8 years ago
10.3390/ma11020243
Hyperspectral-Enhanced Dark Field Microscopy for Single and Collective Nanoparticle Characterization in Biological EnvironmentsCited by: 67
Author(s): Paula Zamora-Pérez, Dionysia Tsoutsi, Rui-Xue Xu, Pilar Rivera-Gil
Software Mentions: 1
Published: over 8 years ago
10.3390/ma13010074
The Buckling and Post-Buckling of Steel C-Columns in Elevated TemperatureCited by: 6
Author(s): L. Czechowski, Sławomir Kędziora, Zbigniew Kołakowski
Software Mentions: 1
Published: over 6 years ago
10.3390/ma14051157
Influence of Tool Geometry and Process Parameters on the Properties of Friction Stir Spot Welded Multiple (AA 5754 H111) Aluminium SheetsCited by: 10
Author(s): Danka Labus Zlatanović, Sebastian Baloš, Jean Pierre Bergmann, Stefan Rasche, Milan Pećanac, Saurav Goel
Software Mentions: 1
Published: over 5 years ago
10.3390/ma14092117
Approach of Pavement Surface Layer Degradation Caused by Tire Contact Using Semi-Analytical ModelCited by: 5
Author(s): Edem Yawo Manyo, B. Picoux, Philippe Reynaud, Rémi Tautou, Daniel Nélias, Fatima Allou, Christophe Petit
Software Mentions: 1
Published: about 5 years ago
10.3390/ma9020112
Residual Stress Analysis Based on Acoustic and Optical MethodsCited by: 11
Author(s): S. Yoshida, Tomohiro Sasaki, Masaru Usui, Shuichi Sakamoto, David Gurney, Ik Keun Park
Software Mentions: 1
Published: over 10 years ago
10.3390/ma10020204
Study on Damage Evaluation and Machinability of UD-CFRP for the Orthogonal Cutting Operation Using Scanning Acoustic Microscopy and the Finite Element MethodCited by: 22
Author(s): Dongyao Wang, Xiaodong He, Zhonghai Xu, Weicheng Jiao, Yue Fan, Long Jiang, Linlin Li, Wenbo Liu, Rongguo Wang
Software Mentions: 1
Published: over 9 years ago
10.3390/ma12060918
The Study of Buckling and Post-Buckling of a Step-Variable FGM BoxCited by: 9
Author(s): L. Czechowski, Zbigniew Kołakowski
Software Mentions: 1
Published: about 7 years ago
10.1111/mcn.12920
Combined protocol for severe and moderate acute malnutrition in emergencies: Stakeholder perspectives in four countriesCited by: 2
Author(s): Sarah L Dalglish, Mamoudou Seni Badou, Amin Sirat, Omar Abdullahi, Mena Fundi Eso Adalbert, Marie Biotteau, Amelia Goldsmith, Naoko Kozuki
Software Mentions: 1
Published: over 6 years ago
10.1111/mcn.13035
How do nutrition professionals working in low‐income countries perceive and prioritize actions to prevent wasting? A mixed‐methods studyCited by: 2
Author(s): Scott Ickes, Christina Craig, Rebecca Heidkamp
Software Mentions: 1
Published: almost 6 years ago
10.15766/mep_2374-8265.10839
Cardiac Auscultation Lab Using a Heart Sounds Auscultation Simulation ManikinCited by: 8
Author(s): Antonia Quinn, Jennifer Kaminsky, Andrew F. Adler, Shirley Eisner, Robin K. Ovitsh
Software Mentions: 1
Published: over 6 years ago
10.15766/mep_2374-8265.11107
Respiratory Auscultation Lab Using a Cardiopulmonary Auscultation Simulation ManikinCited by: 4
Author(s): Jennifer Kaminsky, R. M. Bianchi, Shirley Eisner, Robin K. Ovitsh, Ana María López, Leanna Smith, Nawar Talukder, Antonia Quinn
Software Mentions: 1
Published: over 5 years ago
10.15766/mep_2374-8265.10952
Suicide Assessment and Management Team-Based Learning ModuleCited by: 1
Author(s): Sarah Lerchenfeldt, Suzan Kamel-ElSayed, Gustavo Patino, David M. Thomas, Jolyn Wagner
Software Mentions: 1
Published: almost 6 years ago
10.1080/10872981.2018.1438719
The challenges of implementing advanced access for residents in family medicine in Quebec. Do promising strategies exist?Cited by: 9
Author(s): Sabina Abou Malham, Nassera Touati, Lara Maillet, Mylaine Bréton
Software Mentions: 1
Published: over 8 years ago
10.1155/2015/984825
Lysosome and Cytoskeleton Pathways Are Robustly Enriched in the Blood of Septic Patients: A Meta-Analysis of Transcriptomic DataCited by: 23
Author(s): Jie Ma, Chuanxi Chen, Andreas S. Barth, Chris Cheadle, Xiangdong Guan, Li Gao
Software Mentions: 1
Published: over 11 years ago
10.1155/2013/137629
Genes Related to Mitochondrial Functions, Protein Degradation, and Chromatin Folding Are Differentially Expressed in Lymphomonocytes of Rett Syndrome PatientsCited by: 53
Author(s): Alessandra Pecorelli, Guido Leoni, Franco Cervellati, Raffaella Canali, Cinzia Signorini, Silvia Leoncini, Alessio Cortelazzo, Claudio De Felice, Lucia Ciccoli, Joussef Hayek, Giuseppe Valacchi
Software Mentions: 1
Published: over 13 years ago
10.1097/MD.0000000000012032
Exploring the molecular mechanism associated with breast cancer bone metastasis using bioinformatic analysis and microarray genetic interaction networkCited by: 18
Author(s): Xinhua Chen, Zhe Pei, Hao Peng, Zhihong Zheng
Software Mentions: 1
Published: almost 8 years ago
10.1097/MD.0000000000014157
Identification of a novel mutation of FGFR3 gene in a large Chinese pedigree with hypochondroplasia by next-generation sequencingCited by: 7
Author(s): Guixiang Yao, Guangxin Wang, Dawei Wang, Guohai Su
Software Mentions: 1
Published: over 7 years ago
10.1097/MD.0000000000019749
Targeted next generation sequencing revealed a novel deletion-frameshift mutation of KCNH2 gene in a Chinese Han family with long QT syndromeCited by: 3
Author(s): Fengli Du, Guangxin Wang, Dawei Wang, Guosheng Su, Guixiang Yao, Wei Zhang, Guohai Su
Software Mentions: 1
Published: about 6 years ago
10.1016/j.media.2020.101699
Surgical spectral imagingCited by: 76
Author(s): Neil T. Clancy, Geoffrey Jones, Lena Maier-Hein, Daniel S. Elson, Danail Stoyanov
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00795-019-00229-2
Stage-dependent differential gene expression profiles of cranial neural crest-like cells derived from mouse-induced pluripotent stem cellsCited by: 4
Author(s): Ayano Odashima, Shin Onodera, Akiko Saito, Yuuki Ogihara, Tatsuya Ichinohe, Toshifumi Azuma
Software Mentions: 1
Published: almost 7 years ago
10.4317/medoral.23521
Quality and readability of the dental information obtained by patients on Internet: criteria for selecting medical consultation websitesCited by: 2
Author(s): Sara Allegue-Magaz, Miguel Peñarrocha Diago, Cintia Chamorro-Petronacci, Alejandro I. Lorenzo-Pouso, Andrés Blanco Carrión, Abel Garcı́a Garcı́a, Mario Pérez‐Sayáns
Software Mentions: 1
Published: over 6 years ago
10.4317/medoral.20229
Molecular genetic study of novel biomarkers for early diagnosis of oral squamous cell carcinomaCited by: 14
Author(s): Yong-Deok Kim, Jeon Eun-Hyoung, Yeon-Sun Kim, Kang-Mi Pang, Jin‐Yong Lee, Sung-Hwan Cho, Taeyun Kim, Taesung Park, Soung Min Kim, Myung-Jin Kim, Jong-Ho Lee
Software Mentions: 1
Published: over 11 years ago
10.3758/s13421-018-0882-9
Dissociating visuo-spatial and verbal working memory: It’s all in the featuresCited by: 11
Author(s): Marie Poirier, James M. Yearsley, Jean Saint‐Aubin, Claudette Fortin, Geneviève Gallant, Dominic Guitard
Software Mentions: 1
Published: over 7 years ago
10.3390/metabo11020128
Behavioral and Metabolome Differences between C57BL/6 and DBA/2 Mouse Strains: Implications for Their Use as Models for Depression- and Anxiety-Like PhenotypesCited by: 5
Author(s): Michaela D. Filiou, Markus Nussbaumer, Larysa Teplytska, Christoph W. Turck
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms19092705
Characterization of the XTH Gene Family: New Insight to the Roles in Soybean Flooding ToleranceCited by: 41
Author(s): Li Song, Babu Valliyodan, Silvas J. Prince, Jinrong Wan, Henry T. Nguyen
Software Mentions: 1
Published: over 7 years ago
10.3390/metabo10110425
Integrative Metabolomic and Transcriptomic Analyses Reveal Metabolic Changes and Its Molecular Basis in Rice Mutants of the Strigolactone PathwayCited by: 7
Author(s): Xiujuan Zhou, Ling Liu, Yufei Li, Kang Li, Xiaoli Liu, Junjie Zhou, Chenkun Yang, Xianqing Liu, Chuanying Fang, Jie Luo
Software Mentions: 1
Published: over 5 years ago
10.3390/metabo11010053
Comprehensive Comparative Analysis of Local False Discovery Rate Control MethodsCited by: 1
Author(s): Shin June Kim, Young-Sook Oh, Jaesik Jeong
Software Mentions: 1
Published: over 5 years ago
10.3390/metabo9090188
2-Deoxy-d-Glucose-Induced Metabolic Alteration in Human Oral Squamous SCC15 Cells: Involvement of N-Glycosylation of Axl and MetCited by: 11
Author(s): Naeun Lee, Won‐Jun Jang, Ji Hae Seo, Sooyeun Lee, Chul‐Ho Jeong
Software Mentions: 1
Published: over 6 years ago
10.3390/microarrays3040340
t-Test at the Probe Level: An Alternative Method to Identify Statistically Significant Genes for Microarray DataCited by: 3
Author(s): Marcelo Boareto, Nestor Caticha
Software Mentions: 1
Published: over 11 years ago
10.1186/s12934-016-0547-y
Effects of nitrogen availability on polymalic acid biosynthesis in the yeast-like fungus Aureobasidium pullulansCited by: 29
Author(s): Yongkang Wang, Xueqin Song, Yongjun Zhang, Bochu Wang, Xiang Zou
Software Mentions: 1
Published: almost 10 years ago
10.1186/1475-2859-13-88
Production of medium chain length polyhydroxyalkanoate in metabolic flux optimized Pseudomonas putidaCited by: 77
Author(s): José Manuel Borrero‐de Acuña, Agata Bielecka, Susanne Häußler, Max Schobert, Martina Jahn, Christoph Wittmann, Dieter Jahn, Ignacio Poblete‐Castro
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12934-016-0527-2
Rewiring a secondary metabolite pathway towards itaconic acid production in Aspergillus nigerCited by: 63
Author(s): Abeer Hossain, An Liu, Anja Brickwedde, Lars Wilms, Martien P. M. Caspers, Karin Overkamp, Peter J. Punt
Software Mentions: 1
Published: almost 10 years ago
10.1186/1475-2859-8-18
Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin productionCited by: 45
Author(s): Elisabetta Carata, Clelia Peano, Salvatore Maurizio Tredici, Francesco Ferrari, Adelfia Talà, Giorgio Corti, Silvio Bicciato, Gianluca De Bellis, Pietro Alifano
Software Mentions: 1
Published: about 17 years ago
10.1186/s12859-021-04088-6
Fast and SNP-aware short read alignment with SALTCited by: 0
Author(s): Wei Quan, Bo Liu, Yadong Wang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12859-017-1470-x
BATVI: Fast, sensitive and accurate detection of virus integrationsCited by: 17
Author(s): Chandana Tennakoon, Wing-Kin Sung
Software Mentions: 1
Published: over 9 years ago
10.1002/mbo3.1015
Links between <i>S</i>‐adenosylmethionine and Agr‐based quorum sensing for biofilm development in <i>Listeria monocytogenes</i> EGD‐eCited by: 11
Author(s): Yue-Jia Lee, Chinling Wang
Software Mentions: 1
Published: about 6 years ago
10.1128/MRA.01014-19
Genome Sequence of Lactobacillus fermentum 47-7, a Good In Vitro Probiotic Strain Isolated from a Healthy Thai InfantCited by: 1
Author(s): Atthaphon Konyanee, Panjamaporn Yotpanya, Marutpong Panya, Chulapan Engchanil, Namfon Suebwongsa, Wises Namwat, Hlainghlaing Thaw, Kiatichai Faksri, Nipaporn Sankuntaw, Viraphong Lulitanond
Software Mentions: 1
Published: over 6 years ago
10.1186/s40168-019-0679-5
Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosisCited by: 117
Author(s): Bo-Young Hong, Takanori Sobue, Linda Choquette, Amanda K. Dupuy, Angela Thompson, Joseph A. Burleson, Andrew L. Salner, Peter K. Schauer, Pujan Joshi, Evan Fox, Dong-Guk Shin, George M. Weinstock, Linda D. Strausbaugh, Anna Dongari-Bagtzoglou, Douglas E. Peterson, Patricia I. Diaz
Software Mentions: 1
Published: about 7 years ago
10.1186/1471-2105-12-90
Using context to improve protein domain identificationCited by: 32
Author(s): Alejandro Ochoa, Manuel Llinás, Mona Singh
Software Mentions: 1
Published: about 15 years ago
10.1186/1471-2105-7-414
Semi-supervised discovery of differential genesCited by: 2
Author(s): Shigeyuki Oba, Shin lshii
Software Mentions: 1
Published: over 19 years ago
10.1186/1471-2105-11-299
poolMC: Smart pooling of mRNA samples in microarray experimentsCited by: 35
Author(s): Raghunandan M. Kainkaryam, Angela Bruex, Anna C. Gilbert, John Schiefelbein, Peter J. Woolf
Software Mentions: 1
Published: about 16 years ago
10.1186/s40168-020-00956-0
Polinton-like viruses are abundant in aquatic ecosystemsCited by: 27
Author(s): Christopher M. Bellas, Rubén Sommaruga
Software Mentions: 1
Published: over 5 years ago
10.1186/s12859-020-03584-5
Hap10: reconstructing accurate and long polyploid haplotypes using linked readsCited by: 8
Author(s): Sina Majidian, Mohammad Hossein Kahaei, Dick de Ridder
Software Mentions: 1
Published: almost 6 years ago
10.3390/microorganisms8010133
Inter-Versus Intra-Host Sequence Diversity of pH1N1 and Associated Clinical OutcomesCited by: 2
Author(s): Hebah A. Al-Khatib, Muna Al Maslamani, Peter Coyle, Iain Thompson, Elmoubasher Farag, Asmaa A. Al Thani, Hadi M. Yassine
Software Mentions: 1
Published: over 6 years ago
10.12669/pjms.335.12990
Vitamin D supplementation improves FEV1 in patients of Bronchial AsthmaCited by: 8
Author(s): Muhammad Zafar Majeed Babar, Mazhar Hussain, Sadia Majeed
Software Mentions: 1
Published: over 8 years ago
10.1017/S0031182016001797
Rumen fluke (<i>Calicophoron daubneyi</i>) on Welsh farms: prevalence, risk factors and observations on co-infection with<i>Fasciola hepatica</i>Cited by: 44
Author(s): Rhys Aled Jones, Peter M. Brophy, Erik T. Mitchell, H. Williams
Software Mentions: 1
Published: over 9 years ago
10.1186/1756-3305-5-162
Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplusCited by: 22
Author(s): Andrew M. Heekin, Felix D. Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A. Brayton
Software Mentions: 1
Published: almost 14 years ago
10.1186/s13071-015-0914-2
Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populationsCited by: 16
Author(s): Marcelo Ramalho-Ortigão, Iliano V. Coutinho-Abreu, Valdir Queiroz Balbino, Carlos Alberto Santiago Figueirêdo, Rami Mukbel, Hussan Dayem, Hanafi A. Hanafi, Shabaan S. El-Hossary, Emad El Din Y. Fawaz, Mahmoud N. Abo‐Shehada, David F. Hoel, Gwen Stayback, Mariha Wadsworth, Douglas A. Shoue, Jenica Abrudan, Neil F. Lobo, Andrew R. Mahon, Scott J. Emrich, Shaden Kamhawi, Frank H. Collins, Mary Ann McDowell
Software Mentions: 1
Published: about 11 years ago
10.1186/s13071-018-2816-6
Molecular and morphological characterisation of Pharyngostrongylus kappa Mawson, 1965 (Nematoda: Strongylida) from Australian macropodid marsupials with the description of a new species, P. patriciae n. sp.Cited by: 1
Author(s): Tanapan Sukee, Ian Beveridge, Abdul Jabbar
Software Mentions: 1
Published: about 8 years ago
10.1186/s13071-016-1544-z
The persistence and ecological impacts of a cyanobacterium genetically engineered to express mosquitocidal Bacillus thuringiensis toxinsCited by: 0
Author(s): Irene Ketseoglou, Gustav Bouwer
Software Mentions: 1
Published: about 10 years ago
10.1186/s13071-019-3578-5
Redescription and molecular characterisation of the fish ectoparasite Anilocra capensis Leach, 1818 (Isopoda: Cymothoidae), with description of six new species of Anilocra Leach, 1818 from AfricaCited by: 13
Author(s): Rachel L. Welicky, Nico J. Smit
Software Mentions: 1
Published: almost 7 years ago
10.1186/1756-3305-6-276
The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovisCited by: 24
Author(s): Andrew M. Heekin, Felix D. Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Scot E. Dowd, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A. Brayton
Software Mentions: 1
Published: over 12 years ago
10.3390/ijms19124019
Transcriptome Sequence Analysis Elaborates a Complex Defensive Mechanism of Grapevine (Vitis vinifera L.) in Response to Salt StressCited by: 45
Author(s): Le Guan, Muhammad Salman Haider, Nadeem Khan, Maazullah Nasim, Songtao Jiu, Muhammad Fiaz, Xudong Zhu, Kekun Zhang, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago
10.1080/20010001.2018.1516072
Evaluation of aging, diabetes mellitus, and skin wounds by scanning acoustic microscopy with protease digestionCited by: 5
Author(s): Katsutoshi Miura, Kensuke Yamashita
Software Mentions: 1
Published: over 8 years ago
10.20411/pai.v6i2.461
Lack of Atorvastatin Effect on Monocyte Gene Expression and Inflammatory Markers in HIV-1- infected ART-suppressed Individuals at Risk of non-AIDS ComorbiditiesCited by: 1
Author(s): Anjana Yadav, Andrew V. Kossenkov, Louise C. Showe, Sarah J. Ratcliffe, Grace Choi, Luis J. Montaner, Pablo Tebas, Pamela A. Shaw, Ronald G. Collman
Software Mentions: 1
Published: almost 5 years ago
10.1007/s12253-020-00865-5
Metabolic Parameters as Predictors for Progression Free and Overall Survival of Patients with Metastatic Colorectal CancerCited by: 6
Author(s): Zsuzsanna Németh, W. Wijker, Zsolt Lengyel, Erika Hitre, Katalin Borbély
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.49
A new 12-gene diagnostic biomarker signature of melanoma revealed by integrated microarray analysisCited by: 55
Author(s): Wanting Liu, Yonghong Peng, Desmond J. Tobin
Software Mentions: 1
Published: about 13 years ago
10.1186/s12859-018-2253-8
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long readsCited by: 8
Author(s): Stefano Beretta, Murray Patterson, Tobias Marschall, Marcel Martin, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni
Software Mentions: 1
Published: almost 8 years ago
10.7717/peerj.788
Loss of CITED1, an MITF regulator, drives a phenotype switch<i>in vitro</i>and can predict clinical outcome in primary melanoma tumoursCited by: 19
Author(s): Jill Howlin, Helena Cirenajwis, Barbara Lettiero, Johan Staaf, Martin Lauss, Lao H. Saal, Åke Borg, Sofia K. Gruvberger-Saal, Göran Jönsson
Software Mentions: 1
Published: over 11 years ago
10.1186/1471-2105-9-114
Effects of dependence in high-dimensional multiple testing problemsCited by: 197
Author(s): KI Kyung In Kim, Mark A. van de Wiel
Software Mentions: 1
Published: over 18 years ago
10.7717/peerj.9338
URMAP, an ultra-fast read mapperCited by: 7
Author(s): Robert C. Edgar
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.8349
Multiple genome pattern analysis and signature gene identification for the Caucasian lung adenocarcinoma patients with different tobacco exposure patternsCited by: 1
Author(s): Yanmei Dong, Li-da Qin, Yifan Tong, Qian He, Ling Wang, Kai Song
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.6116
Elevational patterns of the percentages of plant genera with tropical and temperate affinities in NepalCited by: 1
Author(s): Yunyun Lai, Jianmeng Feng
Software Mentions: 1
Published: over 7 years ago
10.1155/2019/5030475
High Levels of <i>β</i>-Amyloid, Tau, and Phospho-Tau in Red Blood Cells as Biomarkers of Neuropathology in Senescence-Accelerated MouseCited by: 17
Author(s): Rebecca Piccarducci, Deborah Pietrobono, Carolina Pellegrini, Simona Daniele, Matteo Fornai, Luca Antonioli, Maria Letizia Trincavelli, Corrado Blandizzi, Claudia Martini
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.808
Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search spaceCited by: 33
Author(s): Richard Wilton, Tamás Budavàri, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay
Software Mentions: 1
Published: over 11 years ago
10.7717/peerj.7314
Mitochondrial DNA in human identification: a reviewCited by: 56
Author(s): António Amorim, Teresa Fernandes, Nuno Taveira
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.3932
Influence of current climate, historical climate stability and topography on species richness and endemism in Mesoamerican geophyte plantsCited by: 39
Author(s): Victoria Sosa, Israel Loera
Software Mentions: 1
Published: over 8 years ago