cran: SAM | Projects | Ecosyste.ms: Papers

10.1038/s41438-020-00362-5

Rapid dehydration of grape berries dampens the post-ripening transcriptomic program and the metabolite profile evolution
Cited by: 15
Author(s): Sara Zenoni, Alessandra Amato, Erica D’Incà, Flavia Guzzo, Giovanni Battista Tornielli
Software Mentions: 1
Published: about 4 years ago

10.7189/jogh.07.020416

Developmental and behavioural problems in children with severe acute malnutrition in Malawi: A cross-sectional study.
Cited by: 17
Author(s): Meta van den Heuvel, Wieger Voskuijl, Kate Chidzalo, Marko Kerac, Sijmen A. Reijneveld, Robert Bandsma, Melissa Gladstone
Software Mentions: 1
Published: almost 7 years ago

10.7189/jogh.11.04014

Smoking-attributable mortality in South America: A systematic review
Cited by: 2
Author(s): Alexandra Giraldo-Osorio, Mónica Pérez-Ríos, Julia Rey-Brandariz, Leonor Varela-Lema, Agustín Montes, Adriana Rodríguez-R, Nerea Mourino, Alberto Ruano-Raviña
Software Mentions: 1
Published: over 3 years ago

10.1002/hbm.24445

Characterizing hippocampal dynamics with MEG: A systematic review and evidence‐based guidelines
Cited by: 40
Author(s): Emily Ruzich, Maité Crespo‐García, Sarang S. Dalal, Justin F. Schneiderman
Software Mentions: 1
Published: about 6 years ago

10.1002/hbm.25126

Structural correlates of atypical visual and motor cortical oscillations in pediatric‐onset multiple sclerosis
Cited by: 6
Author(s): Amy Waldman, John Sollee, Ritobrato Datta, Amy M. Lavery, Geraldine Liu, Tomás S. Alemán, Brenda Banwell, William Gaetz
Software Mentions: 1
Published: over 4 years ago

10.1002/hbm.23189

Modulation of post-movement beta rebound by contraction force and rate of force development
Cited by: 54
Author(s): Adam Fry, Karen J. Mullinger, George O’Neill, Eleanor L. Barratt, Peter G. Morris, Markus Bauer, Jonathan P. Folland, Matthew J. Brookes
Software Mentions: 1
Published: over 8 years ago

10.1038/s41439-019-0057-7

Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing
Cited by: 7
Author(s): Masao Nagasaki, Yoshio Kuroki, Tomoko Shibata, Fumiki Katsuoka, Tsuneyo Mimori, Yosuke Kawai, Naoko Minegishi, Atsushi Hozawa, Shinichi Kuriyama, Yôichi Suzuki, Hiroshi Kawame, Fuji Nagami, Takako Toda, Soichi Ogishima, Kazuyuki Kojima, Kazuharu Misawa, Osamu Takahashi, Nobuo Fuse, Hiroshi Tanaka, Nobuo Yaegashi, Kengo Kinoshita, Shiego Kure, Jun Yasuda, Masayuki Yamamoto
Software Mentions: 1
Published: over 5 years ago

10.1038/s41439-019-0045-y

A novel compound heterozygous mutation in TTC8 identified in a Japanese patient
Cited by: 8
Author(s): Shigeru Satō, Takeshi Morimoto, Kikuko Hotta, Takashi Fujikado, Kohji Nishida
Software Mentions: 1
Published: over 5 years ago

10.1186/1742-4933-10-19

Slower immune system aging in women versus men in the Japanese population
Cited by: 142
Author(s): Katsuíku Hirokawa, Masanori Utsuyama, Yoshio Hayashi, Masanobu Kitagawa, Takashi Makinodan, Tamás Fülöp
Software Mentions: 1
Published: over 11 years ago

10.1186/1752-0509-7-S2-S10

HSA: A Heuristic Splice Alignment Tool
Cited by: 7
Author(s): Jingde Bu, Xuebin Chi, Zhong Jin
Software Mentions: 1
Published: about 11 years ago

10.1186/1752-0509-5-99

Integrative network analysis reveals active microRNAs and their functions in gastric cancer
Cited by: 79
Author(s): Chien Wei Tseng, Lin Chen, Chiung Nien Chen, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: over 13 years ago

10.1186/1750-9378-2-16

Genome wide expression analysis in HPV16 Cervical Cancer: identification of altered metabolic pathways
Cited by: 55
Author(s): Carlos Pérez‐Plasencia, Guelaguetza Vázquez-Ortíz, Ricardo López-Romero, Patricia Piña‐Sánchez, José Moreno, Mauricio Salcedo
Software Mentions: 1
Published: about 17 years ago

10.1186/s13027-017-0157-2

High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer
Cited by: 32
Author(s): Wendy K. Glenn, Christopher C. Ngan, Timothy G. Amos, Richard J. Edwards, Joshua M. Swift, Louise Lutze-Mann, Fei Shang, Noel J. Whitaker, James S. Lawson
Software Mentions: 1
Published: over 7 years ago

10.1186/s13027-019-0228-7

The burden of cancers associated with HIV in the South African public health sector, 2004–2014: a record linkage study
Cited by: 42
Author(s): Tafadzwa Dhokotera, Julia Bohlius, Adrian Spoerri, Matthias Egger, Jabulani Ncayiyana, Victor Olago, Elvira Singh, Mazvita Sengayi
Software Mentions: 1
Published: over 5 years ago

10.1186/1752-0509-4-51

Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma
Cited by: 229
Author(s): Huiqing Liu, A. Rose Brannon, Anupama Reddy, Gabriela Alexe, Michael Seiler, Alexandra Arreola, Jay Oza, Ming Yao, David Juan, Louis S. Liou, Shridar Ganesan, Arnold J. Levine, W. Kimryn Rathmell, Gyan Bhanot
Software Mentions: 1
Published: over 14 years ago

10.1155/2015/164087

Identification of Differentially Expressed Genes in Pituitary Adenomas by Integrating Analysis of Microarray Data
Cited by: 17
Author(s): Peng Zhao, Wei Hu, Hongyun Wang, Shengyuan Yu, Chuzhong Li, Jiwei Bai, Songbai Gui, Yazhou Zhang
Software Mentions: 1
Published: almost 10 years ago

10.3390/insects11110743

Changes in Honey Bee Head Proteome in Response to Dietary 24-Methylenecholesterol
Cited by: 1
Author(s): Priyadarshini Chakrabarti, Ramesh R. Sagili
Software Mentions: 1
Published: about 4 years ago

10.3390/insects12080666

Stage- and Rearing-Dependent Metabolomics Profiling of Ophiocordyceps sinensis and Its Pipeline Products
Cited by: 2
Author(s): Rui Tang, Xuehong Qiu, Li Cao, Hailin Long, Richou Han
Software Mentions: 1
Published: over 3 years ago

10.1093/inthealth/ihx022

Monitoring and discharging children being treated for severe acute malnutrition using mid-upper arm circumference: secondary data analysis from rural Gambia
Cited by: 14
Author(s): Alice Burrell, Marko Kerac, Helen M Nabwera
Software Mentions: 1
Published: over 7 years ago

10.1155/2014/721453

Differential Network Analyses of Alzheimer’s Disease Identify Early Events in Alzheimer’s Disease Pathology
Cited by: 10
Author(s): Jing Xia, David M. Rocke, George Perry, Monika Ray
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep10720

Myo-inositol improves the host’s ability to eliminate balofloxacin-resistant Escherichia coli
Cited by: 45
Author(s): Xinhai Chen, Bing-wen Zhang, Hui Li, Xuan‐xian Peng
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.20101

Differential expression profiles of long non-coding RNAs as potential biomarkers for the early diagnosis of acute myocardial infarction
Cited by: 20
Author(s): Ling Li, Yirui Cong, Xueqin Gao, Yini Wang, Ping Lin
Software Mentions: 1
Published: over 7 years ago

10.1038/srep45806

Frequency-dependent oscillatory neural profiles during imitation
Cited by: 5
Author(s): Hisato Sugata, Masayuki Hirata, Yuichi Tamura, Hisao Onishi, Tetsu Goto, Toshihiko Araki, Shiro Yorifuji
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00405-3

MicroRNA-140-5p regulates osteosarcoma chemoresistance by targeting HMGN5 and autophagy
Cited by: 47
Author(s): Yichen Meng, Rui Gao, Jun Ma, Jinqiu Zhao, Enjie Xu, Ce Wang, Xuhui Zhou
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.19674

Whole-exome sequencing reveals novel mutations and epigenetic regulation in hypopharyngeal carcinoma
Cited by: 11
Author(s): Ping Wu, Honglong Wu, Yurong Tang, Shi Luo, Xing Fang, Chubo Xie, Jian He, Suping Zhao, Xiaofeng Wang, Jiajia Xu, Xi Chen, Dongfang Li, Huanming Yang, Jian Wang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01167-8

MicroRNA expression profiling defines the impact of electronic cigarettes on human airway epithelial cells
Cited by: 48
Author(s): Siva Kumar Solleti, Soumyaroop Bhattacharya, Auṣāf Aḥmad, Qian Wang, Jared A. Mereness, Tirumalai Rangasamy, Thomas J. Mariani
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01392-1

Hypertension reduces soluble guanylyl cyclase expression in the mouse aorta via the Notch signaling pathway
Cited by: 36
Author(s): Catarina Rippe, Baoyi Zhu, Katarzyna Krawczyk, Ed VanBavel, Sebastian Albinsson, Jonas Sjölund, Erik N. T. P. Bakker, Karl Swärd
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01913-y

ALOX5 exhibits anti-tumor and drug-sensitizing effects in MLL-rearranged leukemia
Cited by: 22
Author(s): Yungui Wang, Jennifer R. Skibbe, Chao Hu, Lei Dong, Kyle Ferchen, Rui Su, Chenying Li, Hao Huang, Hengyou Weng, Huilin Huang, Xi Qin, Jie Jin, Jianjun Chen, Xi Jiang
Software Mentions: 1
Published: over 7 years ago

10.1186/1752-0509-7-120

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress
Cited by: 65
Author(s): Qinghua Wang, Keerthi P. Venkataramanan, Hongzhan Huang, Eleftherios T. Papoutsakis, Cathy H. Wu
Software Mentions: 1
Published: about 11 years ago

10.1186/1752-0509-5-158

Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network
Cited by: 22
Author(s): Liu Hui, Jianzhong Su, Junhua Li, Hongbo Liu, Jie Lv, Boyan Li, Hong Qiao, Yan Zhang
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-017-02581-8

Extensive phenotypic characterization of a new transgenic mouse reveals pleiotropic perturbations in physiology due to mesenchymal hGH minigene expression
Cited by: 2
Author(s): Aimilios Kaklamanos, Jan Rozman, Manolis Roulis, Niki Karagianni, Marietta Armaka, Moya Wu, Laura Brachthäuser, Julia Calzada‐Wack, Marion Horsch, Johannes Beckers, Birgit Rathkolb, Thure Adler, Frauke Neff, Eckhard Wolf, Valérie Gailus‐Durner, Helmut Fuchs, Martin Hrabě de Angelis, George Kollias
Software Mentions: 1
Published: over 7 years ago

10.1186/1752-0509-4-177

Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses
Cited by: 52
Author(s): Harin Kanani, Bhaskar Dutta, Maria I. Klapa
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-6-152

Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach
Cited by: 32
Author(s): Shengjun Fan, Qiang Geng, Zhenyu Pan, Xin Li, Lu Tie, Yan Pan, Xuejun Li
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-017-03650-8

In-depth method assessments of differentially expressed protein detection for shotgun proteomics data with missing values
Cited by: 28
Author(s): Jinxia Wang, Liwei Li, Tao Chen, Jie Ma, Yunping Zhu, Jujuan Zhuang, Cheng Chang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03755-0

Trilocular phenotype in Brassica juncea L. resulted from interruption of CLAVATA1 gene homologue (BjMc1) transcription
Cited by: 28
Author(s): Ping Xu, Shiyun Cao, Kaining Hu, Xiaohua Wang, Wei Huang, Gang Wang, Zewen Lv, Zhongsong Liu, Jing Wen, Bin Yi, Chaozhi Ma, Jinxing Tu, Tingdong Fu, Jinxiong Shen
Software Mentions: 1
Published: over 7 years ago

10.1186/1752-0509-6-68

Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis
Cited by: 116
Author(s): Jihong Fu, Wentao Tang, Peng Du, Guanghui Wang, Wei Chen, Jingming Li, Yunxiang Zhu, Jun Gao, Long Cui
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-017-02239-5

Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples
Cited by: 29
Author(s): Carmen F. Manso, David F. Bibby, Jean L. Mbisa
Software Mentions: 1
Published: over 7 years ago

10.1186/1752-0509-7-S4-S1

A novel approach to minimize false discovery rate in genome-wide data analysis
Cited by: 2
Author(s): Yuanzhe Bei, Pengyu Hong
Software Mentions: 1
Published: almost 12 years ago

10.1186/1752-0509-3-11

A Drosophila systems model of pentylenetetrazole induced locomotor plasticity responsive to antiepileptic drugs
Cited by: 26
Author(s): Farhan Mohammad, Priyanka Singh, Abhay Sharma
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-017-04679-5

Disentangling environmental and spatial effects on phylogenetic structure of angiosperm tree communities in China
Cited by: 7
Author(s): Hong Qian, Shengbin Chen, Jin Long Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06601-5

Isokinetic angle-specific moments and ratios characterizing hamstring and quadriceps strength in anterior cruciate ligament deficient knees
Cited by: 18
Author(s): Hongshi Huang, Jianqiao Guo, Jie Yang, Yanfang Jiang, Yuanyuan Yu, Steffen Müller, Gexue Ren, Yingfang Ao
Software Mentions: 1
Published: over 7 years ago

10.1186/s12918-015-0215-6

Mathematical analysis of the regulation of competing methyltransferases
Cited by: 21
Author(s): Michael C. Reed, Mary V. Gamble, Megan N. Hall, H. Frederik Nijhout
Software Mentions: 1
Published: about 9 years ago

10.1523/ENEURO.0022-19.2019

Transcriptomic Signatures of Postnatal and Adult Intrinsically Photosensitive Ganglion Cells
Cited by: 17
Author(s): Daniel Berg, Katherine Kartheiser, Megan L. Leyrer, Alexandra Saali, David M. Berson
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.20843

MAPK, NFκB, and VEGF signaling pathways regulate breast cancer liver metastasis
Cited by: 16
Author(s): Xinhua Chen, Zhihong Zheng, Limin Chen, Hongyu Zheng
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-09211-3

Histone/protein deacetylase 11 targeting promotes Foxp3+ Treg function
Cited by: 57
Author(s): Jianbing Huang, Liqing Wang, Satinder Dahiya, Ulf H. Beier, Rongxiang Han, Arabinda Samanta, Joel Bergman, Eduardo M. Sotomayor, Edward Seto, Alan P. Kozikowski, Wayne W. Hancock
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09274-2

Different elevational patterns of rodent species richness between the southern and northern slopes of a mountain
Cited by: 24
Author(s): Ling Shuai, Chun Lei Ren, Wen Bo Yan, Yan Song, Zhi Zeng
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09905-8

Differential evolutionary patterns and expression levels between sex-specific and somatic tissue-specific genes in peanut
Cited by: 9
Author(s): Hui Song, Qingping Zhang, Pei Tian, Nan Zhang
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.22495

Identification of the genetic and clinical characteristics of neuroblastomas using genome-wide analysis
Cited by: 21
Author(s): Kumiko Uryu, Riki Nishimura, Keisuke Kataoka, Yusuke Sato, Atsuko Nakazawa, Hiromichi Suzuki, Kenichi Yoshida, Masafumi Seki, Mitsuteru Hiwatari, Tomoya Isobe, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Katsuyoshi Koh, Ryoji Hanada, Akira Oka, Yasuhide Hayashi, Miki Ohira, Takehiko Kamijo, Hiroki Nagase, Tetsuya Takimoto, Tatsuro Tajiri, Akira Nakagawara, Seishi Ogawa, Junko Takita
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10361-7

High predictive values of RBC membrane-based diagnostics by biophotonics in an integrated approach for Autism Spectrum Disorders
Cited by: 26
Author(s): Giorgia Giacometti, Carla Ferreri, Anna Sansone, Chryssostomos Chatgilialoglu, Carla Marzetti, Ellas Spyratou, Alexandros G. Georgakilas, Marina Marini, Provvidenza Maria Abruzzo, Alessandra Bolotta, Alessandro Ghezzo, Renato Minguzzi, Annio Posar, Paola Visconti
Software Mentions: 1
Published: about 7 years ago

10.1186/1472-6793-8-23

Molecular analysis of photic inhibition of blood-feeding in Anopheles gambiae
Cited by: 55
Author(s): Suchismita Das, George Dimopoulos
Software Mentions: 1
Published: almost 17 years ago

10.18632/oncotarget.23213

Schisandrol B and schisandrin B inhibit TGFβ1-mediated NF-κB activation via a Smad-independent mechanism
Cited by: 17
Author(s): Jung Nyeo Chun, Soonbum Park, Sanghoon Lee, Jae Kyung Kim, Eun Jung Park, Min Ji Kang, Hye Kyung Kim, Jong Kwan Park, Insuk So, Ju Hong Jeon
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-10800-5

Genetic variants in ERCC1 and XPC predict survival outcome of non-small cell lung cancer patients treated with platinum-based therapy
Cited by: 15
Author(s): Ruoxin Zhang, Ming Jia, Huijing Xue, Yuan Xu, Mengyun Wang, Meiling Zhu, Menghong Sun, Jianhua Chang, Qingyi Wei
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11555-9

LNGFR targets the Wnt/β-catenin pathway and promotes the osteogenic differentiation in rat ectomesenchymal stem cells
Cited by: 22
Author(s): Gang Li, Junyu Liu, Yingying Wang, Kun Yang, Manzhu Zhao, Yong Xiao, Xiang Wen, Luchuan Liu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10615-4

Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations
Cited by: 25
Author(s): Rajneesh Srivastava, Güngör Budak, Soma Dash, Salil A. Lachke, Sarath Chandra Janga
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10428-5

Efficient feeder cells preparation system for large-scale preparation and application of induced pluripotent stem cells
Cited by: 9
Author(s): Pengdong Li, Qianqian Wang, Lixiang Zhan, Xia He, Guangfan Chi, Shuang Liu, Ziran Xu, Yuhan Xia, Shuzhi Teng, Lisha Li, Yulin Li
Software Mentions: 1
Published: about 7 years ago

10.1186/1752-0509-6-112

Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study
Cited by: 13
Author(s): Mohammed Alshalalfa, Gary D. Bader, Anna Goldenberg, Quaid Morris, Reda Alhajj
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41598-017-13981-1

Comprehensive analysis of correlations among codon usage bias, gene expression, and substitution rate in Arachis duranensis and Arachis ipaënsis orthologs
Cited by: 40
Author(s): Hui Song, Hongjuan Gao, Jing Liu, Pei Tian, Nan Zhang
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.23704

Methyl donor S-adenosylmethionine (SAM) supplementation attenuates breast cancer growth, invasion, and metastasis<i>in vivo</i>; therapeutic and chemopreventive applications
Cited by: 47
Author(s): Niaz Mahmood, David Cheishvili, Ani Arakelian, Imrana Tanvir, Haseeb Ahmed Khan, Anne-Sophie Pépin, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-15570-8

Associations between Th17-related inflammatory cytokines and asthma in adults: A Case-Control Study
Cited by: 17
Author(s): Ting Zhou, Xiji Huang, Yun Zhou, Jixuan Ma, Min Zhou, Yuewei Liu, Lili Xiao, Jing Yuan, Jungang Xie, Weihong Chen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16183-x

Ketamine’s antidepressant effect is mediated by energy metabolism and antioxidant defense system
Cited by: 48
Author(s): Katja Weckmann, Michael J. Deery, Julie A. Howard, Renata Feret, John M. Asara, Frederik Dethloff, Michaela D. Filiou, Jamie Iannace, Christiana Labermaier, Giuseppina Maccarrone, Christian Webhofer, Larysa Teplytska, Kathryn S. Lilley, Marianne B. Müller, Christoph W. Turck
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15993-3

Characterization of the early molecular changes in the glomeruli of Cd151 −/− mice highlights induction of mindin and MMP-10
Cited by: 10
Author(s): Crystal Naudin, Brian C. Smith, Danielle R. Bond, Matthew D. Dun, Rodney J. Scott, Leonie K. Ashman, Judith Weidenhofer, Séverine Roselli
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.24072

Grade progression in urothelial carcinoma can occur with high or low mutational homology: a first-step toward tumor-specific care in initial low-grade bladder cancer
Cited by: 3
Author(s): Ralf Kittler, Christine Y. Shiang, Ryan Hutchinson, Rahul K. Kollipara, Payal Kapur, Franto Francis, Yair Lotan
Software Mentions: 1
Published: almost 7 years ago

10.1186/1752-0509-3-20

Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation
Cited by: 32
Author(s): Albert C. Huang, Limei Hu, Stuart Kauffman, Wei Zhang, Ilya Shmulevich
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-017-18599-x

Prediction of co-expression genes and integrative analysis of gene microarray and proteomics profile of Keshan disease
Cited by: 9
Author(s): Sen Wang, Rui Yan, Bin Wang, Peiru Du, Wenfeng Tan, Mikko J. Lammi, Xiong Guo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19461-4

Hydroclimatic conditions trigger record harmful algal bloom in western Patagonia (summer 2016)
Cited by: 109
Author(s): Jorge León‐Muñoz, Mauricio A. Urbina, René D. Garreaud, José Luis Iriarte
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20430-0

Pulmonary fibrosis in vivo displays increased p21 expression reduced by 5-HT2B receptor antagonists in vitro – a potential pathway affecting proliferation
Cited by: 13
Author(s): Anna Löfdahl, Kristina Rydell‐Törmänen, Anna Karin Larsson‐Callerfelt, Christina Wenglén, Gunilla Westergren‐Thorsson
Software Mentions: 1
Published: almost 7 years ago

10.1186/1752-0509-5-52

A computational framework for gene regulatory network inference that combines multiple methods and datasets
Cited by: 33
Author(s): R. Gupta, Anna Stincone, Philipp Antczak, Sarah M. Durant, Roy Bicknell, Andréas Bikfalvi, Francesco Falciani
Software Mentions: 1
Published: over 13 years ago

10.18632/oncotarget.23130

Thyroid follicular adenomas and carcinomas: molecular profiling provides evidence for a continuous evolution
Cited by: 28
Author(s): Geert Dom, Sandra Frank, Sébastien Floor, Pashalina Kehagias, Frédérick Libert, Catherine Hoang, Guy Andry, Alex Spinette, Ligia Craciun, Nicolas de Saint Aubin, Christophe Trésallet, Frédérique Tissier, Frédérique Savagner, Samira Majjaj, Ilse Gutierrez-Roelens, Étienne Marbaix, Jacques Emile Dumont, Carine Maenhaut
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19421-y

Metabolomics profiling reveals differential adaptation of major energy metabolism pathways associated with autophagy upon oxygen and glucose reduction
Cited by: 17
Author(s): Katja Weckmann, Philip Diefenthäler, Marius W. Baeken, Kamran Yusifli, Christoph W. Turck, John M. Asara, Christian Behl, Parvana Hajieva
Software Mentions: 1
Published: almost 7 years ago

10.1186/1752-0509-5-2

Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation
Cited by: 7
Author(s): Patrik Sahlin, Pontus Melke, Henrik Jönsson
Software Mentions: 1
Published: almost 14 years ago

10.18632/oncotarget.23971

Genomic BCR-ABL1 breakpoint characterization by a multi-strategy approach for “personalized monitoring” of residual disease in chronic myeloid leukemia patients
Cited by: 27
Author(s): Cosimo Cumbo, Luciana Impera, Crescenzio Francesco Minervini, Paola Orsini, Luisa Anelli, Antonella Zagaria, Nicoletta Coccaro, Giuseppina Tota, Angela Minervini, Paola Casieri, Claudia Brunetti, Antonella Russo Rossi, Elisa Parciante, Giorgina Specchia, Francesco Albano
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21836-6

Onset and Evolution of Southern Annular Mode-Like Changes at Centennial Timescale
Cited by: 79
Author(s): Patricio I. Moreno, Isabel Vilanova, Rodrigo Villa-Martínez, Robert B. Dunbar, David A. Mucciarone, Michael R. Kaplan, René D. Garreaud, Maisa Rojas, Christopher Moy, Ricardo De Pol‐Holz, Fabrice Lambert
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-22292-y

Identification of genomic differences among peripheral arterial beds in atherosclerotic and healthy arteries
Cited by: 61
Author(s): Marja Steenman, O. Espitia, Blandine Maurel, Béatrice Guyomarch, Marie-Françoise Heymann, M.‐A. Pistorius, Benjamin Ory, Dominique Heymann, Rémi Houlgatte, Yann Gouëffic, Thibaut Quillard
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-21889-7

Global Gene Expression Analysis in an in vitro Fibroblast Model of Idiopathic Pulmonary Fibrosis Reveals Potential Role for CXCL14/CXCR4
Cited by: 26
Author(s): L. Raposo Rodríguez, Margaret C. Emblom-Callahan, Mantej K. Chhina, Sarah Bui, Bilal Aljeburry, Luc H. Tran, Rebecca Novak, M. Lemma, Steven D. Nathan, Geraldine M. Grant
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.23976

Intrauterine hyperglycemia induces intergenerational Dlk1-Gtl2 methylation changes in mouse placenta
Cited by: 14
Author(s): Ying Jiang, Yi-Chen Yu, Guo-Hui Ding, Qian Gao, Feng Chen, Qiong Luo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-23325-2

Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms
Cited by: 17
Author(s): Dayang Chen, Hefu Zhen, Yong Qiu, Ping Liu, Peng Zeng, Jun Xia, Qianyu Shi, Lin Xie, Zhu Zhu, Ya Gao, Guodong Huang, Jian Wang, Huanming Yang, Fang Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/nu13093198

Milk Exosomes Transfer Oligosaccharides into Macrophages to Modulate Immunity and Attenuate Adherent-Invasive E. coli (AIEC) Infection
Cited by: 15
Author(s): Yingying He, Zhicheng He, Serena Leone, Shubai Liu
Software Mentions: 1
Published: about 3 years ago

10.1186/s12893-016-0126-5

Emergency radiological examination of the externally stabilized pelvis – there is a catch to it: lessons learned from two cases with symphyseal disruption despite initial inconspicuous computed tomography
Cited by: 3
Author(s): Jörg Bayer, Thorsten Hammer, Dirk Maier, Norbert P. Südkamp, Oliver Hauschild
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-23726-3

Insensitivity to atorvastatin is associated with increased accumulation of intracellular lipid droplets and fatty acid metabolism in breast cancer cells
Cited by: 23
Author(s): Barbara Lettiero, Maria Inasu, Siker Kimbung, Signe Borgquist
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2482-14-18

Use of human fibrin glue (Ti sseel) versus sta ples for mesh fixation in laparoscopic transabdominal preperitoneal hernioplasty (TISTA): a randomized controlled trial (NCT01641718)
Cited by: 2
Author(s): Sascha Müller, René Warschkow, Ulrich Beutner, Cornelia Lüthi, Kristjan Ukegjini, Bruno M. Schmied, Ignazio Tarantino
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-23978-z

IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
Cited by: 20
Author(s): Daichi Shigemizu, Fuyuki Miya, Shintaro Akiyama, Shujiro Okuda, Keith A. Boroevich, Akihiro Fujimoto, Hidewaki Nakagawa, Kouichi Ozaki, Shumpei Niida, Yonehiro Kanemura, Nobuhiko Okamoto, Shinji Saitoh, Mitsuhiro Kato, Mami Yamasaki, Tatsuo Matsunaga, Hideki Mutai, Kenjiro Kosaki, Tatsuhiko Tsunoda
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26427-z

Chytridiomycosis causes catastrophic organism-wide metabolic dysregulation including profound failure of cellular energy pathways
Cited by: 16
Author(s): Laura F. Grogan, Lee F. Skerratt, Lee Berger, Scott D. Cashins, Robert D. Trengove, Joel Gummer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26425-1

Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic
Cited by: 13
Author(s): Kazue Nakanaga, Yoshitoshi Ogura, Atsushi Toyoda, Mitsunori Yoshida, Hanako Fukano, Nagatoshi Fujiwara, Yuji Miyamoto, Noboru Nakata, Yuko Kazumi, Shingo Maeda, Tadasuke Ooka, Masamichi Goto, Kazunari Tanigawa, Satoshi Mitarai, Koichi Suzuki, Norihisa Ishii, Manabu Ato, Tetsuya Hayashi, Yoshihiko Hoshino
Software Mentions: 1
Published: over 6 years ago

10.1186/1472-6807-10-S1-S2

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers
Cited by: 16
Author(s): Peng Chen, Jinyan Li
Software Mentions: 1
Published: almost 15 years ago

10.1186/s13018-020-01987-x

Sustained acoustic medicine as a non-surgical and non-opioid knee osteoarthritis treatment option: a health economic cost-effectiveness analysis for symptom management
Cited by: 5
Author(s): Thomas M. Best, Stephanie C. Petterson, Kevin D. Plancher
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-018-29301-0

Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia
Cited by: 22
Author(s): Djamel Gully, Pierre Czernic, Stéphane Cruveiller, Frédéric Mahé, C. F. H. Longin, David Vallenet, Philippe François, Sabine Nidelet, Stéphanie Rialle, Éric Giraud, Jean‐François Arrighi, Moumita Dasgupta, Fabienne Cartieaux
Software Mentions: 1
Published: over 6 years ago

10.1186/s12887-017-0950-5

Developmental performance of hospitalized severely acutely malnourished under-six children in low- income setting
Cited by: 9
Author(s): Teklu Gemechu Abessa, Liesbeth Bruckers, Patrick Kolsteren, Marita Granitzer
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-30067-8

Acute Physical Activity Enhances Executive Functions in Children with ADHD
Cited by: 64
Author(s): Valentin Benzing, Yu Kai Chang, Mirko Schmidt
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-31217-8

Identification of chronological and photoageing-associated microRNAs in human skin
Cited by: 15
Author(s): Ankit Srivastava, Magnus Karlsson, Claire Marionnet, Françoise Bernerd, Audrey Guéniche, Charles El Rawadi, Mona Ståhle, Enikö Sonkoly, Lionel Breton, Andor Pivarcsi
Software Mentions: 1
Published: about 6 years ago

10.1186/2052-1847-6-6

Cardiac performance, biomarkers and gene expression studies in previously sedentary men participating in half-marathon training
Cited by: 8
Author(s): Danica D. Vance, Gordon L. Chen, Mark Stoutenberg, Robert J. Myerburg, Kevin A. Jacobs, Lubov Nathanson, Arlette C. Perry, David Seo, Pascal J. Goldschmidt‐Clermont, Evadnie Rampersaud
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13104-016-2296-8

Immunoassay of S-adenosylmethionine and S-adenosylhomocysteine: the methylation index as a biomarker for disease and health status
Cited by: 22
Author(s): Xiujuan Hao, Yan Huang, Ming Qiu, Chunlin Yin, Haiyan Ren, Hongjie Gan, Huijun Li, Yaxia Zhou, Jiazhi Xia, Wenting Li, Lijuan Guo, Isaac Angres
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-32063-4

Affective computing in virtual reality: emotion recognition from brain and heartbeat dynamics using wearable sensors
Cited by: 220
Author(s): Javier Marín‐Morales, Alberto Greco, Jaime Guixeres, Carmen Llinares, Enzo Pasquale Scilingo, Mariano Alcañíz, Gaetano Valenza
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32788-2

Scanning Acoustic Microscopy and Time-Resolved Fluorescence Spectroscopy for Characterization of Atherosclerotic Plaques
Cited by: 13
Author(s): Bükem Bilen, Belkıs Gökbulut, Ülkü Kafa, Emre Heves, Mehmet Nacı Incı, Mehmet Ünlü
Software Mentions: 1
Published: about 6 years ago

10.1186/s12903-019-0718-4

Emotional stimuli candidates for behavioural intervention in the prevention of early childhood caries: a pilot study
Cited by: 4
Author(s): Michaela Bartošová, Miroslav Světlák, Martina Kukletová, Petra Bořilová Linhartová, Ladislav Dušek, Lýdie Izakovičová Hollá
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-34004-7

Amplification of the Melanocortin-1 Receptor in Nephrotic Syndrome Identifies a Target for Podocyte Cytoskeleton Stabilization
Cited by: 13
Author(s): Lovisa Bergwall, Hanna Wallentin, Johannes Elvin, Peidi Liu, Roberto Boi, Carina Sihlbom, Kyle Hayes, Dale Wright, Börje Haraldsson, Jenny Nyström, Lisa Buvall
Software Mentions: 1
Published: about 6 years ago

10.3390/nu8050251

Challenges in Implementing the Integrated Community-Based Outpatient Therapeutic Program for Severely Malnourished Children in Rural Southern Ethiopia
Cited by: 18
Author(s): Elazar Tadesse, Eva‐Charlotte Ekström, Yemane Berhane
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-37480-z

Determination of Ultrastructural Properties of Human Carotid Atherosclerotic Plaques by Scanning Acoustic Microscopy, Micro-Computer Tomography, Scanning Electron Microscopy and Energy Dispersive X-Ray Spectroscopy
Cited by: 8
Author(s): Bükem Bilen, Leyla Türker Şener, Işıl Albeniz, Meltem Sezen, Mehmet Ünlü, Murat Uğurlucan
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36859-2

Cellular and animal models of skin alterations in the autism-related ADNP syndrome
Cited by: 26
Author(s): Pilar Mollinedo, Oxana Kapitansky, Domingo González‐Lamuño, Adi Zaslavsky, Pedro J. Real, Illana Gozes, Alberto Gandarillas, José L. Fernández-Luna
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13104-019-4764-4

Reliability of crowdsourcing as a method for collecting emotions labels on pictures
Cited by: 6
Author(s): Olga Korovina, Marcos Báez, Fabio Casati
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-38702-8

Comparative Physiological and Metabolic Analysis Reveals a Complex Mechanism Involved in Drought Tolerance in Chickpea (Cicer arietinum L.) Induced by PGPR and PGRs
Cited by: 162
Author(s): Naeem Khan, Asghari Bano, Rahman Ma, J. Guo, Zhiyu Kang, Babar Ma
Software Mentions: 1
Published: almost 6 years ago

Projects: cran: SAM

Papers Mentioning SAM 4,566