cran: SAM | Projects | Ecosyste.ms: Papers

10.1016/j.ccr.2007.02.015

The Differentiation and Stress Response Factor XBP-1 Drives Multiple Myeloma Pathogenesis
Cited by: 354
Author(s): Daniel R. Carrasco, Kumar Sukhdeo, Marina Protopopova, Raktim Sinha, Miriam Enos, Daniel E. Carrasco, Zheng Ma, Mala Mani, Joel M. Henderson, Geraldine S. Pinkus, Nikhil C. Munshi, James W. Horner, Elena Ivanova, Alexei Protopopov, Kenneth C. Anderson, Giovanni Tonon, Ronald A. DePinho
Software Mentions: 1
Published: about 19 years ago

10.1186/1475-2867-11-9

A 6-gene signature identifies four molecular subgroups of neuroblastoma
Cited by: 27
Author(s): Frida Abel, Daniel Dalevi, Maria Nethander, Rebecka Jörnsten, Katleen De Preter, Joëlle Vermeulen, Raymond L. Stallings, Per Kogner, John M. Maris, Staffan Nilsson
Software Mentions: 1
Published: over 15 years ago

10.1186/s12935-018-0547-6

Identification of four differentially methylated genes as prognostic signatures for stage I lung adenocarcinoma
Cited by: 15
Author(s): Weiming Luo, Zheng-Yu Wang, Zhang Xin
Software Mentions: 1
Published: about 8 years ago

10.1186/s12935-021-02127-z

Allele frequency deviation (AFD) as a new prognostic model to predict overall survival in lung adenocarcinoma (LUAD)
Cited by: 3
Author(s): Aisha Al-Dherasi, Yuwei Liao, Sultan Al-Mosaib, Rulin Hua, Yichen Wang, Ying Yu, Yu Zhang, Xuehong Zhang, Raeda Jalayta, Haithm Mousa, Abdullah Al-Danakh, Fawze Alnadari, Marwan Almoiliqy, Salem Baldi, Leming Shi, Dekang Lv, Chi Kong Li, Quentin Liu
Software Mentions: 1
Published: almost 5 years ago

10.1002/cam4.1672

Molecular profiles of tumor contrast enhancement: A radiogenomic analysis in anaplastic gliomas
Cited by: 9
Author(s): Xing Liu, Yiming Li, Zimin Sun, Shaowu Li, Kai Wang, Xing Fan, Yuqing Liu, Lei Wang, Yinyan Wang, Tao Jiang
Software Mentions: 1
Published: almost 8 years ago

10.1002/cam4.1537

A regulatory mutant on <scp>TRIM</scp>26 conferring the risk of nasopharyngeal carcinoma by inducing low immune response
Cited by: 12
Author(s): Xiaoming Lyu, Xiaowei Zhu, Manli Zhao, Xianbo Zuo, Zhong-Xi Huang, Xiao Liu, Tao Jiang, Xu Yang, Xin Li, Xiaobing Long, Jianguo Wang, Jinbang Li, Mingyu Han, Shuang Wang, Tengfei Liu, Bo Zhang, Tao Sun, Zhi Cheng, Mo-Chang Qiu, Lei Dong, Liduan Zheng, Longcheng Zhang, Jiahong Wang, Gan-Guan Wei, Kangde Yao, Qian Wang, Hou-Feng Zheng
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40170-018-0177-4

Metabolic characterization of isocitrate dehydrogenase (IDH) mutant and IDH wildtype gliomaspheres uncovers cell type-specific vulnerabilities
Cited by: 51
Author(s): Matthew C. Garrett, Jantzen Sperry, Daniel Braas, Yan Wang, Thuc Le, Jack Mottahedeh, Kirsten Ludwig, Ascia Eskin, Yue Qin, Rachelle Levy, Joshua J. Breunig, Frank Pajonk, Thomas G. Graeber, Caius G. Radu, Heather R. Christofk, Robert M. Prins, Albert Lai, Linda M. Liau, Giovanni Coppola, Harley I. Kornblum
Software Mentions: 1
Published: about 8 years ago

10.1155/2012/839837

MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer
Cited by: 26
Author(s): Mohammed Alshalalfa
Software Mentions: 1
Published: over 13 years ago

10.1186/s40170-016-0152-x

Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes
Cited by: 56
Author(s): Tonje Husby Haukaas, Leslie R. Euceda, Guro F. Giskeødegård, Santosh Lamichhane, Marit Krohn, Sandra Jernström, Miriam Ragle Aure, Ole Christian Lingjærde, Ellen Schlichting, Øystein Garred, Eldri Undlien Due, Gordon B. Mills, Kristine Kleivi Sahlberg, Anne‐Lise Børresen‐Dale, Tone Frost Bathen
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13021-014-0009-y

A wood density and aboveground biomass variability assessment using pre-felling inventory data in Costa Rica
Cited by: 5
Author(s): Sienna Svob, J. Pablo Arroyo‐Mora, Margaret Kalácska
Software Mentions: 1
Published: over 11 years ago

10.1155/2012/858562

Cardiac Responses during Picture Viewing in Young Male Patients with Schizophrenia
Cited by: 3
Author(s): Roelie Hempel, Julian F. Thayer, Christian Röder, H.G. van Steenis, Nico J.M. van Beveren, Joke H.M. Tulen
Software Mentions: 1
Published: over 13 years ago

10.1186/1476-7120-6-3

Exercise-induced intra-ventricular gradients as a frequent potential cause of myocardial ischemia in cardiac syndrome X patients
Cited by: 14
Author(s): Carlos Cotrim, Ana G. Almeida, Manuel Carrageta
Software Mentions: 1
Published: over 18 years ago

10.1186/1476-7120-11-26

Clinical applications of exercise stress echocardiography in the treadmill with upright evaluation during and after exercise
Cited by: 14
Author(s): Carlos Cotrim, Isabel João, Paula Fazendas, Ana Rita Almeida, Luís Rocha Lopes, Bruno Stuart, Inês Cruz, Daniel Caldeira, María José Loureiro, Gonçalo Morgado, Hélder Pereira
Software Mentions: 1
Published: almost 13 years ago

10.1186/1476-7120-5-6

A new technique for assessing arterial pressure wave forms and central pressure with tissue Doppler
Cited by: 14
Author(s): Brian Haluska, Leanne Jeffriess, P. Mottram, Stéphane Carlier, Thomas H. Marwick
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-12-S13-S15

Finding consistent disease subnetworks across microarray datasets
Cited by: 39
Author(s): Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
Software Mentions: 1
Published: over 14 years ago

10.1038/leu.2013.367

Excess congenital non-synonymous variation in leukemia-associated genes in MLL− infant leukemia: a Children’s Oncology Group report
Cited by: 33
Author(s): Mark C. Valentine, Amy M. Linabery, Sara E. Chasnoff, Andrew Hughes, Cates Mallaney, Nicolás Fuster Sánchez, Joseph Giacalone, Nyla A. Heerema, Joanne M. Hilden, Logan G. Spector, Julie A. Ross, Todd E. Druley
Software Mentions: 1
Published: over 12 years ago

10.3390/life11060539

Origin of Life on Mars: Suitability and Opportunities
Cited by: 14
Author(s): B. C. Clark, Vera M. Kolb, A. Steele, Christopher H. House, N. Lanza, P. J. Gasda, S. J. VanBommel, H. E. Newsom, Jesús Martínez‐Frías
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2105-10-43

An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters
Cited by: 17
Author(s): Qingbo Li, Bryan A. P. Roxas
Software Mentions: 1
Published: over 17 years ago

10.3390/life8040056

Catalytic/Protective Properties of Martian Minerals and Implications for Possible Origin of Life on Mars
Cited by: 31
Author(s): Teresa Fornaro, A. Steele, J. R. Brucato
Software Mentions: 1
Published: over 7 years ago

10.3390/life11080863

Enhanced Expression of Thaumatin-like Protein Gene (LeTLP1) Endows Resistance to Trichoderma atroviride in Lentinula edodes
Cited by: 6
Author(s): Xiaolong Ma, Xiaolin Fan, Jinjie Wang, Ruiping Xu, Lianlian Yan, Yan Zhou, Yuhua Gong, Yang Xiao
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms19030853

Impairment of Meristem Proliferation in Plants Lacking the Mitochondrial Protease AtFTSH4
Cited by: 10
Author(s): Alicja Dołzbłasz, Edyta M. Gola, Katarzyna Sokołowska, Elwira Smakowska-Luzan, Adriana Twardawska, Hanna Janska
Software Mentions: 1
Published: about 8 years ago

10.26508/lsa.201800228

Mitochondrial acetyl-CoA reversibly regulates locus-specific histone acetylation and gene expression
Cited by: 30
Author(s): Oswaldo A. Lozoya, Tianyuan Wang, Dagoberto Grenet, Taylor C. Wolfgang, Mack Sobhany, Douglas Ganini da Silva, Gonzalo Riadi, Navdeep S. Chandel, Richard P. Woychik, Janine H. Santos
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-12-305

IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data
Cited by: 27
Author(s): Hyunsoo Kim, Yingtao Bi, Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri
Software Mentions: 1
Published: almost 15 years ago

10.1038/s41377-021-00632-4

Nano-precision metrology of X-ray mirrors with laser speckle angular measurement
Cited by: 8
Author(s): Hongchang Wang, Simone Moriconi, Kawal Sawhney
Software Mentions: 1
Published: over 4 years ago

10.1186/s12936-019-2771-5

Hospital-derived antibody profiles of malaria patients in Southwest India
Cited by: 8
Author(s): Apoorva Venkatesh, Aarti Jain, Huw Davies, Ligia Periera, Jennifer Maki, Edwin Gomes, Philip L. Felgner, Sanjeeva Srivastava, Swati Patankar, Pradipsinh K. Rathod
Software Mentions: 1
Published: about 7 years ago

10.1186/1475-2875-10-242

Global gene expression profiling of Plasmodium falciparum in response to the anti-malarial drug pyronaridine
Cited by: 14
Author(s): Kanyanan Kritsiriwuthinan, Sastra Chaotheing, Philip Shaw, Chayaphat Wongsombat, Porntip Chavalitshewinkoon-Petmitr, Sumalee Kamchonwongpaisan
Software Mentions: 1
Published: almost 15 years ago

10.3390/md9091566

NMR-Based Metabolomic Investigations on the Differential Responses in Adductor Muscles from Two Pedigrees of Manila Clam Ruditapes philippinarum to Cadmium and Zinc
Cited by: 29
Author(s): Huifeng Wu, Xiaoli Liu, Jianmin Zhao, Junbao Yu
Software Mentions: 1
Published: over 14 years ago

10.3390/md15020040

Short-Chain Chitin Oligomers: Promoters of Plant Growth
Cited by: 70
Author(s): Alexander J. Winkler, José Alfonso Domínguez Núñez, Inmaculada Aranaz, César Poza‐Carrión, Katrina M. Ramonell, Shauna Somerville, Marta Berrocal-Lobo
Software Mentions: 1
Published: over 9 years ago

10.3390/ma13020455

The Influence of the Internal Forces of the Buckling Modes on the Load-Carrying Capacity of Composite Medium-Length Beams under Bending
Cited by: 17
Author(s): Monika Zaczynska, Zbigniew Kołakowski
Software Mentions: 1
Published: over 6 years ago

10.3390/ma14133468

Eigenproblem Versus the Load-Carrying Capacity of Hybrid Thin-Walled Columns with Open Cross-Sections in the Elastic Range
Cited by: 0
Author(s): Zbigniew Kołakowski, Andrzej Teter
Software Mentions: 1
Published: almost 5 years ago

10.3390/ma13153314

Catastrophic Influence of Global Distortional Modes on the Post-Buckling Behavior of Opened Columns
Cited by: 5
Author(s): Andrzej Teter, Zbigniew Kołakowski
Software Mentions: 1
Published: almost 6 years ago

10.3390/ma13112567

Multi-Mode Buckling Analysis of FGM Channel Section Beams
Cited by: 5
Author(s): Monika Zaczynska, Filip Kaźmierczyk
Software Mentions: 1
Published: almost 6 years ago

10.3390/ma11071152

Elasto-Plastic Mechanical Properties and Failure Mechanism of Innovative Ti-(SiCf/Al3Ti) Laminated Composites for Sphere-Plane Contact at the Early Stage of Penetration Process
Cited by: 11
Author(s): Jingchuan Liu, Lan Zhang, Fengchun Jiang, Mengqi Zhang, Liquan Wang, Feihong Yun
Software Mentions: 1
Published: almost 8 years ago

10.3390/ma11020243

Hyperspectral-Enhanced Dark Field Microscopy for Single and Collective Nanoparticle Characterization in Biological Environments
Cited by: 67
Author(s): Paula Zamora-Pérez, Dionysia Tsoutsi, Rui-Xue Xu, Pilar Rivera-Gil
Software Mentions: 1
Published: over 8 years ago

10.3390/ma13010074

The Buckling and Post-Buckling of Steel C-Columns in Elevated Temperature
Cited by: 6
Author(s): L. Czechowski, Sławomir Kędziora, Zbigniew Kołakowski
Software Mentions: 1
Published: over 6 years ago

10.3390/ma14051157

Influence of Tool Geometry and Process Parameters on the Properties of Friction Stir Spot Welded Multiple (AA 5754 H111) Aluminium Sheets
Cited by: 10
Author(s): Danka Labus Zlatanović, Sebastian Baloš, Jean Pierre Bergmann, Stefan Rasche, Milan Pećanac, Saurav Goel
Software Mentions: 1
Published: over 5 years ago

10.3390/ma14092117

Approach of Pavement Surface Layer Degradation Caused by Tire Contact Using Semi-Analytical Model
Cited by: 5
Author(s): Edem Yawo Manyo, B. Picoux, Philippe Reynaud, Rémi Tautou, Daniel Nélias, Fatima Allou, Christophe Petit
Software Mentions: 1
Published: about 5 years ago

10.3390/ma9020112

Residual Stress Analysis Based on Acoustic and Optical Methods
Cited by: 11
Author(s): S. Yoshida, Tomohiro Sasaki, Masaru Usui, Shuichi Sakamoto, David Gurney, Ik Keun Park
Software Mentions: 1
Published: over 10 years ago

10.3390/ma10020204

Study on Damage Evaluation and Machinability of UD-CFRP for the Orthogonal Cutting Operation Using Scanning Acoustic Microscopy and the Finite Element Method
Cited by: 22
Author(s): Dongyao Wang, Xiaodong He, Zhonghai Xu, Weicheng Jiao, Yue Fan, Long Jiang, Linlin Li, Wenbo Liu, Rongguo Wang
Software Mentions: 1
Published: over 9 years ago

10.3390/ma12060918

The Study of Buckling and Post-Buckling of a Step-Variable FGM Box
Cited by: 9
Author(s): L. Czechowski, Zbigniew Kołakowski
Software Mentions: 1
Published: about 7 years ago

10.1111/mcn.12920

Combined protocol for severe and moderate acute malnutrition in emergencies: Stakeholder perspectives in four countries
Cited by: 2
Author(s): Sarah L Dalglish, Mamoudou Seni Badou, Amin Sirat, Omar Abdullahi, Mena Fundi Eso Adalbert, Marie Biotteau, Amelia Goldsmith, Naoko Kozuki
Software Mentions: 1
Published: over 6 years ago

10.1111/mcn.13035

How do nutrition professionals working in low‐income countries perceive and prioritize actions to prevent wasting? A mixed‐methods study
Cited by: 2
Author(s): Scott Ickes, Christina Craig, Rebecca Heidkamp
Software Mentions: 1
Published: almost 6 years ago

10.15766/mep_2374-8265.10839

Cardiac Auscultation Lab Using a Heart Sounds Auscultation Simulation Manikin
Cited by: 8
Author(s): Antonia Quinn, Jennifer Kaminsky, Andrew F. Adler, Shirley Eisner, Robin K. Ovitsh
Software Mentions: 1
Published: over 6 years ago

10.15766/mep_2374-8265.11107

Respiratory Auscultation Lab Using a Cardiopulmonary Auscultation Simulation Manikin
Cited by: 4
Author(s): Jennifer Kaminsky, R. M. Bianchi, Shirley Eisner, Robin K. Ovitsh, Ana María López, Leanna Smith, Nawar Talukder, Antonia Quinn
Software Mentions: 1
Published: over 5 years ago

10.15766/mep_2374-8265.10952

Suicide Assessment and Management Team-Based Learning Module
Cited by: 1
Author(s): Sarah Lerchenfeldt, Suzan Kamel-ElSayed, Gustavo Patino, David M. Thomas, Jolyn Wagner
Software Mentions: 1
Published: almost 6 years ago

10.1080/10872981.2018.1438719

The challenges of implementing advanced access for residents in family medicine in Quebec. Do promising strategies exist?
Cited by: 9
Author(s): Sabina Abou Malham, Nassera Touati, Lara Maillet, Mylaine Bréton
Software Mentions: 1
Published: over 8 years ago

10.1155/2015/984825

Lysosome and Cytoskeleton Pathways Are Robustly Enriched in the Blood of Septic Patients: A Meta-Analysis of Transcriptomic Data
Cited by: 23
Author(s): Jie Ma, Chuanxi Chen, Andreas S. Barth, Chris Cheadle, Xiangdong Guan, Li Gao
Software Mentions: 1
Published: over 11 years ago

10.1155/2013/137629

Genes Related to Mitochondrial Functions, Protein Degradation, and Chromatin Folding Are Differentially Expressed in Lymphomonocytes of Rett Syndrome Patients
Cited by: 53
Author(s): Alessandra Pecorelli, Guido Leoni, Franco Cervellati, Raffaella Canali, Cinzia Signorini, Silvia Leoncini, Alessio Cortelazzo, Claudio De Felice, Lucia Ciccoli, Joussef Hayek, Giuseppe Valacchi
Software Mentions: 1
Published: over 13 years ago

10.1097/MD.0000000000012032

Exploring the molecular mechanism associated with breast cancer bone metastasis using bioinformatic analysis and microarray genetic interaction network
Cited by: 18
Author(s): Xinhua Chen, Zhe Pei, Hao Peng, Zhihong Zheng
Software Mentions: 1
Published: almost 8 years ago

10.1097/MD.0000000000014157

Identification of a novel mutation of FGFR3 gene in a large Chinese pedigree with hypochondroplasia by next-generation sequencing
Cited by: 7
Author(s): Guixiang Yao, Guangxin Wang, Dawei Wang, Guohai Su
Software Mentions: 1
Published: over 7 years ago

10.1097/MD.0000000000019749

Targeted next generation sequencing revealed a novel deletion-frameshift mutation of KCNH2 gene in a Chinese Han family with long QT syndrome
Cited by: 3
Author(s): Fengli Du, Guangxin Wang, Dawei Wang, Guosheng Su, Guixiang Yao, Wei Zhang, Guohai Su
Software Mentions: 1
Published: about 6 years ago

10.1016/j.media.2020.101699

Surgical spectral imaging
Cited by: 76
Author(s): Neil T. Clancy, Geoffrey Jones, Lena Maier-Hein, Daniel S. Elson, Danail Stoyanov
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00795-019-00229-2

Stage-dependent differential gene expression profiles of cranial neural crest-like cells derived from mouse-induced pluripotent stem cells
Cited by: 4
Author(s): Ayano Odashima, Shin Onodera, Akiko Saito, Yuuki Ogihara, Tatsuya Ichinohe, Toshifumi Azuma
Software Mentions: 1
Published: almost 7 years ago

10.4317/medoral.23521

Quality and readability of the dental information obtained by patients on Internet: criteria for selecting medical consultation websites
Cited by: 2
Author(s): Sara Allegue-Magaz, Miguel Peñarrocha Diago, Cintia Chamorro-Petronacci, Alejandro I. Lorenzo-Pouso, Andrés Blanco Carrión, Abel Garcı́a Garcı́a, Mario Pérez‐Sayáns
Software Mentions: 1
Published: over 6 years ago

10.4317/medoral.20229

Molecular genetic study of novel biomarkers for early diagnosis of oral squamous cell carcinoma
Cited by: 14
Author(s): Yong-Deok Kim, Jeon Eun-Hyoung, Yeon-Sun Kim, Kang-Mi Pang, Jin‐Yong Lee, Sung-Hwan Cho, Taeyun Kim, Taesung Park, Soung Min Kim, Myung-Jin Kim, Jong-Ho Lee
Software Mentions: 1
Published: over 11 years ago

10.3758/s13421-018-0882-9

Dissociating visuo-spatial and verbal working memory: It’s all in the features
Cited by: 11
Author(s): Marie Poirier, James M. Yearsley, Jean Saint‐Aubin, Claudette Fortin, Geneviève Gallant, Dominic Guitard
Software Mentions: 1
Published: over 7 years ago

10.3390/metabo11020128

Behavioral and Metabolome Differences between C57BL/6 and DBA/2 Mouse Strains: Implications for Their Use as Models for Depression- and Anxiety-Like Phenotypes
Cited by: 5
Author(s): Michaela D. Filiou, Markus Nussbaumer, Larysa Teplytska, Christoph W. Turck
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19092705

Characterization of the XTH Gene Family: New Insight to the Roles in Soybean Flooding Tolerance
Cited by: 41
Author(s): Li Song, Babu Valliyodan, Silvas J. Prince, Jinrong Wan, Henry T. Nguyen
Software Mentions: 1
Published: over 7 years ago

10.3390/metabo10110425

Integrative Metabolomic and Transcriptomic Analyses Reveal Metabolic Changes and Its Molecular Basis in Rice Mutants of the Strigolactone Pathway
Cited by: 7
Author(s): Xiujuan Zhou, Ling Liu, Yufei Li, Kang Li, Xiaoli Liu, Junjie Zhou, Chenkun Yang, Xianqing Liu, Chuanying Fang, Jie Luo
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo11010053

Comprehensive Comparative Analysis of Local False Discovery Rate Control Methods
Cited by: 1
Author(s): Shin June Kim, Young-Sook Oh, Jaesik Jeong
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo9090188

2-Deoxy-d-Glucose-Induced Metabolic Alteration in Human Oral Squamous SCC15 Cells: Involvement of N-Glycosylation of Axl and Met
Cited by: 11
Author(s): Naeun Lee, Won‐Jun Jang, Ji Hae Seo, Sooyeun Lee, Chul‐Ho Jeong
Software Mentions: 1
Published: over 6 years ago

10.3390/microarrays3040340

t-Test at the Probe Level: An Alternative Method to Identify Statistically Significant Genes for Microarray Data
Cited by: 3
Author(s): Marcelo Boareto, Nestor Caticha
Software Mentions: 1
Published: over 11 years ago

10.1186/s12934-016-0547-y

Effects of nitrogen availability on polymalic acid biosynthesis in the yeast-like fungus Aureobasidium pullulans
Cited by: 29
Author(s): Yongkang Wang, Xueqin Song, Yongjun Zhang, Bochu Wang, Xiang Zou
Software Mentions: 1
Published: almost 10 years ago

10.1186/1475-2859-13-88

Production of medium chain length polyhydroxyalkanoate in metabolic flux optimized Pseudomonas putida
Cited by: 77
Author(s): José Manuel Borrero‐de Acuña, Agata Bielecka, Susanne Häußler, Max Schobert, Martina Jahn, Christoph Wittmann, Dieter Jahn, Ignacio Poblete‐Castro
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12934-016-0527-2

Rewiring a secondary metabolite pathway towards itaconic acid production in Aspergillus niger
Cited by: 63
Author(s): Abeer Hossain, An Liu, Anja Brickwedde, Lars Wilms, Martien P. M. Caspers, Karin Overkamp, Peter J. Punt
Software Mentions: 1
Published: almost 10 years ago

10.1186/1475-2859-8-18

Phenotypes and gene expression profiles of Saccharopolyspora erythraea rifampicin-resistant (rif) mutants affected in erythromycin production
Cited by: 45
Author(s): Elisabetta Carata, Clelia Peano, Salvatore Maurizio Tredici, Francesco Ferrari, Adelfia Talà, Giorgio Corti, Silvio Bicciato, Gianluca De Bellis, Pietro Alifano
Software Mentions: 1
Published: about 17 years ago

10.1186/s12859-021-04088-6

Fast and SNP-aware short read alignment with SALT
Cited by: 0
Author(s): Wei Quan, Bo Liu, Yadong Wang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-017-1470-x

BATVI: Fast, sensitive and accurate detection of virus integrations
Cited by: 17
Author(s): Chandana Tennakoon, Wing-Kin Sung
Software Mentions: 1
Published: over 9 years ago

10.1002/mbo3.1015

Links between S‐adenosylmethionine and Agr‐based quorum sensing for biofilm development in Listeria monocytogenes EGD‐e
Cited by: 11
Author(s): Yue-Jia Lee, Chinling Wang
Software Mentions: 1
Published: about 6 years ago

10.1128/MRA.01014-19

Genome Sequence of Lactobacillus fermentum 47-7, a Good In Vitro Probiotic Strain Isolated from a Healthy Thai Infant
Cited by: 1
Author(s): Atthaphon Konyanee, Panjamaporn Yotpanya, Marutpong Panya, Chulapan Engchanil, Namfon Suebwongsa, Wises Namwat, Hlainghlaing Thaw, Kiatichai Faksri, Nipaporn Sankuntaw, Viraphong Lulitanond
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-019-0679-5

Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosis
Cited by: 117
Author(s): Bo-Young Hong, Takanori Sobue, Linda Choquette, Amanda K. Dupuy, Angela Thompson, Joseph A. Burleson, Andrew L. Salner, Peter K. Schauer, Pujan Joshi, Evan Fox, Dong-Guk Shin, George M. Weinstock, Linda D. Strausbaugh, Anna Dongari-Bagtzoglou, Douglas E. Peterson, Patricia I. Diaz
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-12-90

Using context to improve protein domain identification
Cited by: 32
Author(s): Alejandro Ochoa, Manuel Llinás, Mona Singh
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2105-7-414

Semi-supervised discovery of differential genes
Cited by: 2
Author(s): Shigeyuki Oba, Shin lshii
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-11-299

poolMC: Smart pooling of mRNA samples in microarray experiments
Cited by: 35
Author(s): Raghunandan M. Kainkaryam, Angela Bruex, Anna C. Gilbert, John Schiefelbein, Peter J. Woolf
Software Mentions: 1
Published: about 16 years ago

10.1186/s40168-020-00956-0

Polinton-like viruses are abundant in aquatic ecosystems
Cited by: 27
Author(s): Christopher M. Bellas, Rubén Sommaruga
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-020-03584-5

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Cited by: 8
Author(s): Sina Majidian, Mohammad Hossein Kahaei, Dick de Ridder
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms8010133

Inter-Versus Intra-Host Sequence Diversity of pH1N1 and Associated Clinical Outcomes
Cited by: 2
Author(s): Hebah A. Al-Khatib, Muna Al Maslamani, Peter Coyle, Iain Thompson, Elmoubasher Farag, Asmaa A. Al Thani, Hadi M. Yassine
Software Mentions: 1
Published: over 6 years ago

10.12669/pjms.335.12990

Vitamin D supplementation improves FEV1 in patients of Bronchial Asthma
Cited by: 8
Author(s): Muhammad Zafar Majeed Babar, Mazhar Hussain, Sadia Majeed
Software Mentions: 1
Published: over 8 years ago

10.1017/S0031182016001797

Rumen fluke (Calicophoron daubneyi) on Welsh farms: prevalence, risk factors and observations on co-infection withFasciola hepatica
Cited by: 44
Author(s): Rhys Aled Jones, Peter M. Brophy, Erik T. Mitchell, H. Williams
Software Mentions: 1
Published: over 9 years ago

10.1186/1756-3305-5-162

Analysis of Babesia bovis infection-induced gene expression changes in larvae from the cattle tick, Rhipicephalus (Boophilus) microplus
Cited by: 22
Author(s): Andrew M. Heekin, Felix D. Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A. Brayton
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13071-015-0914-2

Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations
Cited by: 16
Author(s): Marcelo Ramalho-Ortigão, Iliano V. Coutinho-Abreu, Valdir Queiroz Balbino, Carlos Alberto Santiago Figueirêdo, Rami Mukbel, Hussan Dayem, Hanafi A. Hanafi, Shabaan S. El-Hossary, Emad El Din Y. Fawaz, Mahmoud N. Abo‐Shehada, David F. Hoel, Gwen Stayback, Mariha Wadsworth, Douglas A. Shoue, Jenica Abrudan, Neil F. Lobo, Andrew R. Mahon, Scott J. Emrich, Shaden Kamhawi, Frank H. Collins, Mary Ann McDowell
Software Mentions: 1
Published: about 11 years ago

10.1186/s13071-018-2816-6

Molecular and morphological characterisation of Pharyngostrongylus kappa Mawson, 1965 (Nematoda: Strongylida) from Australian macropodid marsupials with the description of a new species, P. patriciae n. sp.
Cited by: 1
Author(s): Tanapan Sukee, Ian Beveridge, Abdul Jabbar
Software Mentions: 1
Published: about 8 years ago

10.1186/s13071-016-1544-z

The persistence and ecological impacts of a cyanobacterium genetically engineered to express mosquitocidal Bacillus thuringiensis toxins
Cited by: 0
Author(s): Irene Ketseoglou, Gustav Bouwer
Software Mentions: 1
Published: about 10 years ago

10.1186/s13071-019-3578-5

Redescription and molecular characterisation of the fish ectoparasite Anilocra capensis Leach, 1818 (Isopoda: Cymothoidae), with description of six new species of Anilocra Leach, 1818 from Africa
Cited by: 13
Author(s): Rachel L. Welicky, Nico J. Smit
Software Mentions: 1
Published: almost 7 years ago

10.1186/1756-3305-6-276

The ovarian transcriptome of the cattle tick, Rhipicephalus (Boophilus) microplus, feeding upon a bovine host infected with Babesia bovis
Cited by: 24
Author(s): Andrew M. Heekin, Felix D. Guerrero, Kylie G. Bendele, Leo Saldivar, Glen A. Scoles, Scot E. Dowd, Cedric Gondro, Vishvanath Nene, Appolinaire Djikeng, Kelly A. Brayton
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms19124019

Transcriptome Sequence Analysis Elaborates a Complex Defensive Mechanism of Grapevine (Vitis vinifera L.) in Response to Salt Stress
Cited by: 45
Author(s): Le Guan, Muhammad Salman Haider, Nadeem Khan, Maazullah Nasim, Songtao Jiu, Muhammad Fiaz, Xudong Zhu, Kekun Zhang, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago

10.1080/20010001.2018.1516072

Evaluation of aging, diabetes mellitus, and skin wounds by scanning acoustic microscopy with protease digestion
Cited by: 5
Author(s): Katsutoshi Miura, Kensuke Yamashita
Software Mentions: 1
Published: over 8 years ago

10.20411/pai.v6i2.461

Lack of Atorvastatin Effect on Monocyte Gene Expression and Inflammatory Markers in HIV-1- infected ART-suppressed Individuals at Risk of non-AIDS Comorbidities
Cited by: 1
Author(s): Anjana Yadav, Andrew V. Kossenkov, Louise C. Showe, Sarah J. Ratcliffe, Grace Choi, Luis J. Montaner, Pablo Tebas, Pamela A. Shaw, Ronald G. Collman
Software Mentions: 1
Published: almost 5 years ago

10.1007/s12253-020-00865-5

Metabolic Parameters as Predictors for Progression Free and Overall Survival of Patients with Metastatic Colorectal Cancer
Cited by: 6
Author(s): Zsuzsanna Németh, W. Wijker, Zsolt Lengyel, Erika Hitre, Katalin Borbély
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.49

A new 12-gene diagnostic biomarker signature of melanoma revealed by integrated microarray analysis
Cited by: 55
Author(s): Wanting Liu, Yonghong Peng, Desmond J. Tobin
Software Mentions: 1
Published: about 13 years ago

10.1186/s12859-018-2253-8

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads
Cited by: 8
Author(s): Stefano Beretta, Murray Patterson, Tobias Marschall, Marcel Martin, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.788

Loss of CITED1, an MITF regulator, drives a phenotype switchin vitroand can predict clinical outcome in primary melanoma tumours
Cited by: 19
Author(s): Jill Howlin, Helena Cirenajwis, Barbara Lettiero, Johan Staaf, Martin Lauss, Lao H. Saal, Åke Borg, Sofia K. Gruvberger-Saal, Göran Jönsson
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-9-114

Effects of dependence in high-dimensional multiple testing problems
Cited by: 197
Author(s): KI Kyung In Kim, Mark A. van de Wiel
Software Mentions: 1
Published: over 18 years ago

10.7717/peerj.9338

URMAP, an ultra-fast read mapper
Cited by: 7
Author(s): Robert C. Edgar
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.8349

Multiple genome pattern analysis and signature gene identification for the Caucasian lung adenocarcinoma patients with different tobacco exposure patterns
Cited by: 1
Author(s): Yanmei Dong, Li-da Qin, Yifan Tong, Qian He, Ling Wang, Kai Song
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6116

Elevational patterns of the percentages of plant genera with tropical and temperate affinities in Nepal
Cited by: 1
Author(s): Yunyun Lai, Jianmeng Feng
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/5030475

High Levels of β-Amyloid, Tau, and Phospho-Tau in Red Blood Cells as Biomarkers of Neuropathology in Senescence-Accelerated Mouse
Cited by: 17
Author(s): Rebecca Piccarducci, Deborah Pietrobono, Carolina Pellegrini, Simona Daniele, Matteo Fornai, Luca Antonioli, Maria Letizia Trincavelli, Corrado Blandizzi, Claudia Martini
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.808

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space
Cited by: 33
Author(s): Richard Wilton, Tamás Budavàri, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay
Software Mentions: 1
Published: over 11 years ago

10.7717/peerj.7314

Mitochondrial DNA in human identification: a review
Cited by: 56
Author(s): António Amorim, Teresa Fernandes, Nuno Taveira
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.3932

Influence of current climate, historical climate stability and topography on species richness and endemism in Mesoamerican geophyte plants
Cited by: 39
Author(s): Victoria Sosa, Israel Loera
Software Mentions: 1
Published: over 8 years ago

Projects: cran: SAM

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning SAM 4,566