cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/s12864-016-3402-y

An integrated analysis of QTL mapping and RNA sequencing provides further insights and promising candidates for pod number variation in rapeseed (Brassica napus L.)
Cited by: 24
Author(s): Ye Jiang, Yuhua Yang, Bin Chen, Jiaqin Shi, Meizhong Luo, Jiasui Zhan, Xinfa Wang, Guihua Liu, Hanzhong Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-7-69

Specific age related signatures in Drosophila body parts transcriptome
Cited by: 97
Author(s): Fabrice Girardot, Christelle Lasbleiz, Véronique Monnier, Hervé Tricoire
Software Mentions: 1
Published: over 18 years ago

10.1155/2012/639038

Global Gene Expression Profiling of Human Osteosarcomas Reveals Metastasis-Associated Chemokine Pattern
Cited by: 31
Author(s): Heidi M. Namløs, Stine H. Kresse, Christoph Müller, Jörn Henriksen, Rita Holdhus, Gunnar Sæter, Øyvind S. Bruland, Bodil Bjerkehagen, Vidar M. Steen, Ola Myklebost
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-021-07892-9

InvertypeR: Bayesian inversion genotyping with Strand-seq data
Cited by: 3
Author(s): Vincent C.T. Hanlon, Carl-Adam Mattsson, Diana C.J. Spierings, Victor Guryev, Peter M Lansdorp
Software Mentions: 1
Published: over 3 years ago

10.1155/2012/805614

Comparative Gene Expression Profiling of Benign and Malignant Lesions Reveals Candidate Therapeutic Compounds for Leiomyosarcoma
Cited by: 16
Author(s): Badreddin Edris, Jonathan A. Fletcher, Robert B. West, Matt van de Rijn, Andrew H. Beck
Software Mentions: 1
Published: almost 13 years ago

10.3109/03009742.2011.623137

Gene expression analysis of rheumatoid arthritis synovial lining regions by cDNA microarray combined with laser microdissection: up-regulation of inflammation-associated STAT1, IRF1, CXCL9, CXCL10, and CCL5
Cited by: 67
Author(s): Satoshi Yoshida, Fumiko Arakawa, Fujio Higuchi, Yukinao Ishibashi, Masafumi Goto, Yasuo Sugita, Yuko Nomura, Daisuke Niino, Kay Shimizu, Ryosuke Aoki, Keiko Hashikawa, Yoshizo Kimura, Kaori Yasuda, Kosuke Tashiro, Satoru Kuhara, Kensei Nagata, Koichi Ohshima
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-5-71

Inter-Platform comparability of microarrays in acute lymphoblastic leukemia
Cited by: 31
Author(s): Stephanie A Mitchell, Kevin M. Brown, M. M. Henry, Michelle Mintz, Daniel Catchpoole, Bonnie LaFleur, Dietrich A. Stephan
Software Mentions: 1
Published: about 20 years ago

10.1186/s12864-015-2058-3

Blood transcriptomics of drug-naïve sporadic Parkinson’s disease patients
Cited by: 61
Author(s): Raffaella Calligaris, Mihaela Banica, Paola Roncaglia, Elisa Robotti, Sara Finaurini, Christina Vlachouli, Lucia Antonutti, Francesco Iorio, Annamaria Carissimo, Tatiana Cattaruzza, Andrea Ceiner, Dejan Lazarevic, Alberto Cucca, Nicola Pangher, Emílio Marengo, Diego di Bernardo, Gilberto Pizzolato, Stefano Gustincich
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-12-37

The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds
Cited by: 60
Author(s): Sara Naurin, Bengt Hansson, Dennis Hasselquist, Yong Hwan Kim, Staffan Bensch
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-10-398

Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress
Cited by: 47
Author(s): Harkamal Walia, Clyde Wilson, Abdelbagi M. Ismail, Timothy J. Close, Xinping Cui
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-14-383

Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells
Cited by: 19
Author(s): Sheila Z. Kimaro Mlacha, Sandra Romero-Steiner, Julie C. Dunning Hotopp, Nikhil Kumar, Nadeeza Ishmael, David R. Riley, Umar Farooq, Todd Creasy, Luke J. Tallon, Xinyue Liu, Cynthia S. Goldsmith, Jacquelyn S. Sampson, George M. Carlone, Susan K. Hollingshead, J. Anthony G. Scott, Hervé Tettelin
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-07222-5

Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition
Cited by: 3
Author(s): Hemant Gupta, Khyati Chandratre, Siddharth Sinha, Teng Huang, Xiaobing Wu, Jian Cui, Michael Q. Zhang, San Ming Wang
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13049-016-0216-5

Non-technical skills evaluation in the critical care air ambulance environment: introduction of an adapted rating instrument - an observational study
Cited by: 27
Author(s): Julia A Myers, David Powell, Alex Psirides, Karyn Hathaway, Sarah Aldington, Michael Haney
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-9-344

Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803
Cited by: 69
Author(s): Zhigang Zhang, Ninad D Pendse, Katherine N. Phillips, James B. Cotner, Arkady B. Khodursky
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-14-195

5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea
Cited by: 60
Author(s): Chi Keung Cheng, Chun Hang Au, Sarah K. Wilke, Jason E. Stajich, Miriam E. Zolan, Patricia J. Pukkila, Hoi Shan Kwan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12877-020-01535-6

“Study protocol for the ≥65 years NOrthern jutland Cohort of Fall risk Assessment with Objective measurements (the NOCfao study)”
Cited by: 1
Author(s): Morten Villumsen, Bo Grarup, Steffan Wittrup Christensen, Thorvaldur Skuli Palsson, Rogério Pessoto Hirata
Software Mentions: 1
Published: over 4 years ago

10.1093/schbul/sby117

Attenuated Post-Movement Beta Rebound Associated With Schizotypal Features in Healthy People
Cited by: 18
Author(s): Benjamin A. E. Hunt, Elizabeth B. Liddle, Lauren E. Gascoyne, Lorenzo Magazzini, Bethany Routley, Krish D. Singh, Peter G. Morris, Matthew J. Brookes, Peter F. Liddle
Software Mentions: 1
Published: about 6 years ago

10.1038/sdata.2014.39

Flow-dependent regulation of genome-wide mRNA and microRNA expression in endothelial cells in vivo
Cited by: 24
Author(s): Sandeep Kumar, Chan Woo Kim, Dong Ju Son, Chih-Wen Ni, Hanjoong Jo
Software Mentions: 1
Published: about 10 years ago

10.1186/1472-6963-6-95

Development and testing of innovative patient resources for the management of coronary heart disease (CHD): a descriptive study
Cited by: 24
Author(s): Julie Redfern, Elizabeth Ellis, Tom Briffa, Ben Freedman
Software Mentions: 1
Published: almost 18 years ago

10.1186/2052-1839-14-7

Combined meta-analysis of systemic effects of allogeneic stem cell transplantation and systemic sclerosis
Cited by: 3
Author(s): Dmitry N. Grigoryev, Jignesh Dalal, Mara L. Becker, Shui Q. Ye
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2172-5-20

Cited by: 55
Author(s): Yulei Shen, Javeed Iqbal, Li Xiao, Ryan C. Lynch, Andreas Rosenwald, Louis M. Staudt, Simon Sherman, Karen Dybkær, Guimei Zhou, James D. Eudy, Jan Delabie, Timothy W. McKeithan, Wing C. Chan
Software Mentions: 1
Published: almost 21 years ago

10.1186/1471-2172-9-5

Intragraft gene expression profile associated with the induction of tolerance
Cited by: 6
Author(s): Tomoko Doki, Michael J. Mello, Dennis Mock, Jacqueline M. Evans, Mary Kearns‐Jonker
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12865-020-00373-w

Reduced polyfunctional T cells and increased cellular activation markers in adult allergy patients reporting adverse reactions to food
Cited by: 3
Author(s): Friederike Sonnet, Ellen Namork, Eva Stylianou, Ingvild Gaare-Olstad, Kanutte Huse, Sandra Andorf, Siri Mjaaland, Hubert Dirven, Unni Cecilie Nygaard
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-16-S18-S5

Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data
Cited by: 7
Author(s): Kouichi Kimura, Atsushi Koike
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2334-13-257

Microarray analysis of MicroRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1)
Cited by: 63
Author(s): Hongjiang Song, Qi Wang, Yang Guo, Shunai Liu, Rui Song, Xuesong Gao, Dai Li, Baoshun Li, Deli Zhang, Jun Cheng
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2334-10-88

Parvovirus B19 infection and severe anaemia in Kenyan children: a retrospective case control study
Cited by: 25
Author(s): James Wildig, Yvonne E. Cossart, Norbert Peshu, Nimmo Gicheru, James Tuju, Thomas N. Williams, Charles R. Newton
Software Mentions: 1
Published: over 14 years ago

10.1186/s12879-017-2899-2

Examining the online approaches used by hospitals in Sydney, Australia to inform patients about healthcare associated infections and infection prevention strategies
Cited by: 8
Author(s): J. Park, Holly Seale
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2105-10-5

Bayesian optimal discovery procedure for simultaneous significance testing
Cited by: 22
Author(s): Jing Cao, Xian-Jin Xie, Song Zhang, Angelique W. Whitehurst, Michael A. White
Software Mentions: 1
Published: almost 16 years ago

10.1038/sdata.2018.120

Emotional ratings and skin conductance response to visual, auditory and haptic stimuli
Cited by: 54
Author(s): Elia Gatti, Elena Calzolari, Emanuela Maggioni, Marianna Obrist
Software Mentions: 1
Published: over 6 years ago

10.1186/s12916-016-0671-x

Risk factors for hospital re-presentation among older adults following fragility fractures: a systematic review and meta-analysis
Cited by: 16
Author(s): Saira Mathew, Elise Gane, Kristiann C. Heesch, Steven McPhail
Software Mentions: 1
Published: about 8 years ago

10.1186/1741-7015-8-1

IGF-I induced genes in stromal fibroblasts predict the clinical outcome of breast and lung cancer patients
Cited by: 69
Author(s): Michal Rajski, Rosanna Zanetti-Dällenbach, Brigitte Vogel, Richard Herrmann, Christoph Rochlitz, Martin Buess
Software Mentions: 1
Published: almost 15 years ago

10.1186/1741-7015-9-2

Differential endothelial cell gene expression by African Americans versusCaucasian Americans: a possible contribution to health disparity in vascular disease and cancer
Cited by: 34
Author(s): Peng Wei, Liming Milbauer, Judy Enenstein, Julia Nguyen, Wei Pan, Robert P. Hebbel
Software Mentions: 1
Published: almost 14 years ago

10.1186/1741-7015-7-9

A compact VEGF signature associated with distant metastases and poor outcomes
Cited by: 156
Author(s): Zhiyuan Hu, Cheng Fan, Chad Livasy, Xiaping He, Daniel S. Oh, Matthew G. Ewend, Lisa A. Carey, Subbaya Subramanian, Robert B. West, Francis Ikpatt, Olufunmilayo I. Olopade, Matt van de Rijn, Charles M. Perou
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2105-7-49

Effects of filtering by Present call on analysis of microarray experiments
Cited by: 235
Author(s): Jeanette N. McClintick, Howard J. Edenberg
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2105-15-S7-S1

ADaM: augmenting existing approximate fast matching algorithms with efficient and exact range queries
Cited by: 2
Author(s): Nathan Clement, Lee Parnell Thompson, Daniel P. Miranker
Software Mentions: 1
Published: over 10 years ago

10.1038/s41597-019-0339-4

Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel
Cited by: 2
Author(s): Marco L. Leung, Deborah Watson, Courtney Vaccaro, Fernanda Mafra, Adam S Wenocur, Tiancheng Wang, Håkon Håkonarson, Avni Santani
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12881-018-0580-2

Case report of familial sudden cardiac death caused by a DSG2 p.F531C mutation as genetic background when carrying with heterozygous KCNE5 p.D92E/E93X mutation
Cited by: 8
Author(s): Yenn‐Jiang Lin, Jiana Huang, Siqi He, Ruiling Feng, Zhian Zhong, Yang Liu, Weitao Ye, Xin Li, Hongtao Liao, Hongwen Fei, Fang Rao, Zhi‐Xin Shan, Chunyu Deng, Xianzhang Zhan, Yumei Xue, Hui Liu, Bin Zhang, Kejian Wang, Qianhuan Zhang, Shulin Wu, Xiufang Lin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-020-0366-1

The Chieti Affective Action Videos database, a resource for the study of emotions in psychology
Cited by: 12
Author(s): Adolfo Di Crosta, Pasquale La Malva, Claudio Manna, Anna Marín, Rocco Palumbo, Maria Cristina Verrocchio, Michela Cortini, Nicola Mammarella, Alberto Di Domenico
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-8-72

Transcriptional profiling of Actinobacillus pleuropneumoniae under iron-restricted conditions
Cited by: 59
Author(s): Vincent Deslandes, John H. E. Nash, Josée Harel, James W. Coulton, Mario Jacques
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-8-264

Genomic expression during human myelopoiesis
Cited by: 30
Author(s): Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Dario Basso, Silvio Bicciato, Roberta Zini, Claudia Gemelli, Gian Antonio Danieli, Sérgio Ferrari
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2164-9-369

Peripheral arterial occlusive disease: Global gene expression analyses suggest a major role for immune and inflammatory responses
Cited by: 57
Author(s): Shijun Fu, Hulin Zhao, Jiantao Shi, Arhat Abzhanov, Keith Crawford, Lucila Ohno-Machado, Jianqin Zhou, Yanzhi Du, Winston Patrick Kuo, Ji Zhang, Mier Jiang, Jiamin Jin
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-7-19

OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments
Cited by: 18
Author(s): Morgan N. Price, Adam P. Arkin, Eric J. Alm
Software Mentions: 1
Published: almost 19 years ago

10.1186/1755-8794-4-78

MicroRNA profiling of diverse endothelial cell types
Cited by: 89
Author(s): Matthew N. McCall, Oliver A. Kent, Jianshi Yu, Karen Fox-Talbot, Ari Zaiman, Marc K. Halushka
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-10-240

Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology
Cited by: 17
Author(s): Tao Xu, Jianlei Gu, Yan Zhou, Linfang Du
Software Mentions: 1
Published: over 15 years ago

10.1038/srep02191

Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans
Cited by: 103
Author(s): John R. Erb-Downward, Nicole R. Falkowski, Katie L. Mason, Ryan Muraglia, Gary B. Huffnagle
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-6-122

Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains
Cited by: 87
Author(s): Stefano Campanaro, Alessandro Vezzi, Nicola Vitulo, Federico M. Lauro, Michela D’Angelo, Francesca Simonato, Alessandro Cestaro, G Malacrida, Giulio Bertoloni, Giorgio Valle, Douglas H. Bartlett
Software Mentions: 1
Published: about 19 years ago

10.1186/1471-2164-13-177

Improving the performance of true single molecule sequencing for ancient DNA
Cited by: 39
Author(s): Aurélien Ginolhac, Julia T. Vilstrup, Jesper Stenderup, Morten Rasmussen, Mathias Stiller, Beth Shapiro, Grant D. Zazula, Duane G. Froese, Kathleen E. Steinmann, John F. Thompson, Khaled A. S. Al-Rasheid, M. Thomas P. Gilbert, Eske Willerslev, Ludovic Orlando
Software Mentions: 1
Published: over 12 years ago

10.1186/1755-8794-3-53

Concomitant heterochromatinisation and down-regulation of gene expression unveils epigenetic silencing of RELBin an aggressive subset of chronic lymphocytic leukemia in males
Cited by: 15
Author(s): Jean‐Brice Marteau, O. Rigaud, Thibaut Brugat, Nathalie Gault, Laurent Vallat, Mogens Kruhøffer, Torben F. Ørntoft, Florence Nguyen‐Khac, Sylvie Chevillard, Hélène Merle‐Beral, Jozo Delić
Software Mentions: 1
Published: about 14 years ago

10.1186/1755-8794-3-30

Identification of protein-coding and non-coding RNA expression profiles in CD34+and in stromal cells in refractory anemia with ringed sideroblasts
Cited by: 12
Author(s): Mariana Ozello Baratti, Yuri B Moreira, Fabı́ola Traina, Fernando Ferreira Costa, Sérgio Verjovski-Almeida, Sara T. Olalla-Saad
Software Mentions: 1
Published: over 14 years ago

10.1038/srep07857

Cancer systems biology of TCGA SKCM: Efficient detection of genomic drivers in melanoma
Cited by: 74
Author(s): Jian Guan, Rohit Gupta, Fabian V. Filipp
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep08785

Excess of Rare Variants in Genes that are Key Epigenetic Regulators of Spermatogenesis in the Patients with Non-Obstructive Azoospermia
Cited by: 36
Author(s): Zesong Li, Yi Huang, Honggang Li, Jingchu Hu, Xiao Liu, Tao Jiang, Guangqing Sun, Aifa Tang, Xiaojuan Sun, Weiping Qian, Yong Zeng, Jun Xie, Wei Zhao, Yu Xu, Tingting He, Chengliang Dong, Qunlong Liu, Lisha Mou, Jingxiao Lu, Zheguang Lin, Song Wu, Shengjie Gao, Guangwu Guo, Qiang Feng, Yingrui Li, Xiuqing Zhang, Jun Wang, Huanming Yang, Jian Wang, Chengliang Xiong, Zhiming Cai, Yaoting Gui
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-5-15

Fibroblasts from phenotypically normal palmar fascia exhibit molecular profiles highly similar to fibroblasts from active disease in Dupuytren's Contracture
Cited by: 25
Author(s): Latha Satish, William A. LaFramboise, Sharon L. Johnson, Linda Vi, Anna Njarlangattil, Christina Raykha, John M. Krill-Burger, Phillip H. Gallo, David B. O’Gorman, Bing Siang Gan, Mark E. Baratz, Garth D. Ehrlich, Sandeep Kathju
Software Mentions: 1
Published: over 12 years ago

10.1186/1755-8794-6-22

Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways
Cited by: 12
Author(s): Cecilia Mancini, Paola Roncaglia, Alessandro Brussino, Giovanni Stevanin, Nicola Lo Buono, Helena Krmac, Francesca Maltecca, Elena Gazzano, Anna Bartoletti-Stella, Maria Antonietta Calvaruso, Luisa Iommarini, Claudia Cagnoli, Sylvie Forlani, Isabelle Le Ber, Alexandra Dürr, Alexis Brice, Dario Ghigo, Giorgio Casari, Anna Maria Porcelli, Ada Funaro, Giuseppe Gasparre, Stefano Gustincich, Alfredo Brusco
Software Mentions: 1
Published: over 11 years ago

10.1186/1755-8794-1-37

An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma
Cited by: 112
Author(s): Domenica Ronchetti, Marta Lionetti, Laura Mosca, Luca Agnelli, Adrian Andronache, Sonia Fabris, Giorgio Lambertenghi Deliliers, Antonino Neri
Software Mentions: 1
Published: over 16 years ago

10.1186/1755-8794-2-55

Anti-oncogenic and pro-differentiation effects of clorgyline, a monoamine oxidase A inhibitor, on high grade prostate cancer cells
Cited by: 29
Author(s): Hongjuan Zhao, V. Flamand, Donna M. Peehl
Software Mentions: 1
Published: over 15 years ago

10.1186/1755-8794-3-27

Effect of methylene blue on the genomic response to reperfusion injury induced by cardiac arrest and cardiopulmonary resuscitation in porcine brain
Cited by: 24
Author(s): Cécile Martijn, Lars Wiklund
Software Mentions: 1
Published: over 14 years ago

10.7554/eLife.56611

Cohesion is established during DNA replication utilising chromosome associated cohesin rings as well as those loaded de novo onto nascent DNAs
Cited by: 31
Author(s): Manoj Srinivasan, Marco Fumasoni, Naomi J Petela, Andrew W. Murray, Kim Nasmyth
Software Mentions: 1
Published: over 4 years ago

10.1111/acel.12619

Transcription factors CEP-1/p53 and CEH-23 collaborate with AAK-2/AMPK to modulate longevity in Caenorhabditis<i>elegans</i>.
Cited by: 21
Author(s): Hung‐Hao Chang, Steve Pisano, Amaresh Chaturbedi, Jennifer Chen, Sarah Gordon, Aiswarya Baruah, Siu Sylvia Lee
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-4-74

Microarray analysis of peripheral blood lymphocytes from ALS patients and the SAFE detection of the KEGG ALS pathway
Cited by: 32
Author(s): Jean Luc C. Mougeot, Zhen Li, Andrea E. Price, Fred A. Wright, Benjamin Rix Brooks
Software Mentions: 1
Published: about 13 years ago

10.1186/1755-8794-3-24

Examining smoking-induced differential gene expression changes in buccal mucosa
Cited by: 22
Author(s): Doris M. Kupfer, Vicky L. White, Marita C Jenkins, Dennis Burian
Software Mentions: 1
Published: over 14 years ago

10.1038/srep11895

Identification of reproducible drug-resistance-related dysregulated genes in small-scale cancer cell line experiments
Cited by: 10
Author(s): Lu Ao, Haidan Yan, Tingting Zheng, Yan Wang, Man‐Li Tong, Qingzhou Guan, Xiangyu Li, Hao Cai, Mengyao Li, Zheng Guo
Software Mentions: 1
Published: over 9 years ago

10.1038/srep11035

Identification of ULK1 as a novel biomarker involved in miR-4487 and miR-595 regulation in neuroblastoma SH-SY5Y cell autophagy
Cited by: 29
Author(s): Yi Chen, Shuya Wang, Lan Zhang, Tao Xie, Sicheng Song, Jian Huang, Yonghui Zhang, Liang Ouyang, Bo Liu
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-3-3

Association of adipocyte genes with ASP expression: a microarray analysis of subcutaneous and omental adipose tissue in morbidly obese subjects
Cited by: 55
Author(s): Robin MacLaren, Wei Cui, Huiling Lü, Serge Simard, Katherine Cianflone
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-6-27

Small nucleolar RNAs as new biomarkers in chronic lymphocytic leukemia
Cited by: 70
Author(s): Domenica Ronchetti, Laura Mosca, Giovanna Cutrona, Giacomo Tuana, Massimo Gentile, Sonia Fabris, Luca Agnelli, Gabriella Ciceri, Serena Matis, Carlotta Massucco, Monica Colombo, Daniele Reverberi, Anna Grazia Recchia, Sabrina Bossio, Massimo Negrini, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-8-63

Target genes of myostatin loss-of-function in muscles of late bovine fetuses
Cited by: 69
Author(s): Isabelle Cassar-Malek, Florent Passelaigue, Carine Bernard, Jean J. Léger, Jean-François Hocquette
Software Mentions: 1
Published: almost 18 years ago

10.1186/1755-8794-2-51

Hepatic inflammation mediated by hepatitis C virus core protein is ameliorated by blocking complement activation
Cited by: 18
Author(s): Mau‐Song Chang, Chau‐Ting Yeh, Deng‐Yn Lin, Yu‐Pin Ho, Cheng–Lung Hsu, D. Montgomery Bissell
Software Mentions: 1
Published: over 15 years ago

10.1186/1755-8794-4-41

Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines
Cited by: 30
Author(s): Siew Hong Lam, Serene G. P. Lee, Chin Yo Lin, Jane S. Thomsen, Pan Fu, K. R. K. Murthy, Haixia Li, Kunde Ramamoorthy Govindarajan, Lin C H Nick, Guillaume Bourque, Zhiyuan Gong, Thomas Lufkin, Edison T. Liu, Sinnakaruppan Mathavan
Software Mentions: 1
Published: over 13 years ago

10.1038/srep10752

Characterization of species-specific genes regulated by E2-2 in human plasmacytoid dendritic cells
Cited by: 11
Author(s): Man Cheng, Xuyuan Zhang, Haisheng Yu, Pu Du, Joël Plumas, Laurence Chaperot, Lishan Su, Liguo Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-015-1524-2

Microarray: a global analysis of biomineralization-related gene expression profiles during larval development in the pearl oyster, Pinctada fucata
Cited by: 45
Author(s): Jun Li, Dong Yang, Shiting Liu, Shiguo Li, Guangrui Xu, Guilan Zheng, Liping Xie, Rongqing Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12920-015-0082-4

Effects of statin on circulating microRNAome and predicted function regulatory network in patients with unstable angina
Cited by: 18
Author(s): Jingjin Li, Hong Chen, Jingyi Ren, Junxian Song, Feng Zhang, Jing Zhang, Chongyou Lee, Sufang Li, Qiang Geng, Yin Cao, Ning Xu
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-3-17

Predicting environmental chemical factors associated with disease-related gene expression data
Cited by: 24
Author(s): Chirag Patel, Atul J. Butte
Software Mentions: 1
Published: over 14 years ago

10.1186/1755-8794-3-58

Comparative gene expression profiling analysis of urothelial carcinoma of the renal pelvis and bladder
Cited by: 51
Author(s): Zhongfa Zhang, Kyle A. Furge, Ximing J. Yang, Bin Tean Teh, Donna E. Hansel
Software Mentions: 1
Published: almost 14 years ago

10.1111/acel.12701

FOXO protects against age-progressive axonal degeneration
Cited by: 45
Author(s): Inah Hwang, Han Oh, Evan E. Santo, Do Yeon Kim, John W. Chen, Roderick T. Bronson, Jason W. Locasale, Yoonmi Na, Jaclyn Lee, Sandra M. Reed, Miklós Tóth, Wen H. Yu, Florian L. Muller, Jihye Paik
Software Mentions: 1
Published: almost 7 years ago

10.1186/1755-8794-6-S2-S4

Curation-free biomodules mechanisms in prostate cancer predict recurrent disease
Cited by: 8
Author(s): James L. Chen, Alexander O. Hsu, Xinan Yang, Jiànróng Lǐ, Younghee Lee, Gurunadh Parinandi, Haiquan Li, Yves A. Lussier
Software Mentions: 1
Published: over 11 years ago

10.1186/s12859-020-03918-3

S-conLSH: alignment-free gapped mapping of noisy long reads
Cited by: 8
Author(s): Angana Chakraborty, Burkhard Morgenstern, Sanghamitra Bandyopadhyay
Software Mentions: 1
Published: almost 4 years ago

10.1186/1755-8794-3-2

Gene profiling of the erythro- and megakaryoblastic leukaemias induced by the Graffi murine retrovirus
Cited by: 4
Author(s): Véronique Voisin, Philippe Legault, Diana Paulina Salazar Ospina, Yaacov Ben‐David, Éric Rassart
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-6-S1-S11

A novel method for finding non-small cell lung cancer diagnosis biomarkers
Cited by: 15
Author(s): Quôc-Nam Trân
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12859-015-0594-0

Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data
Cited by: 16
Author(s): Susan Higashi, Cyril Fournier, Christian Gautier, Christine Gaspin, Marie‐France Sagot
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-1-54

The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile
Cited by: 35
Author(s): Oi Lian Kon, Tai‐Tung Yip, Meng Fatt Ho, Weng Hoong Chan, Wai Keong Wong, Soo-Yong Tan, Wai Har Ng, Siok Yuen Kam, Alvin Kh Eng, Patrick A. Ho, Rosa Viner, Hock Soo Ong, M. Priyanthi Kumarasinghe
Software Mentions: 1
Published: about 16 years ago

10.1186/1755-8794-1-13

The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis
Cited by: 425
Author(s): Adam I. Riker, Steven A. Enkemann, Øystein Fodstad, Suhu Liu, Shengxiang Ren, Christopher G. Morris, Yaguang Xi, Paul Howell, Brandon J. Metge, Rajeev S. Samant, Lalita A. Shevde, Wenbin Li, Steven Eschrich, Adil Daud, Jingfang Ju, Jaime Matta
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-7-181

Detection of divergent genes in microbial aCGH experiments
Cited by: 8
Author(s): Lars Snipen, Dirk Repsilber, Ludvig Nyquist, Andreas Ziegler, Ågot Aakra, Are H. Aastveit
Software Mentions: 1
Published: over 18 years ago

10.1186/s12920-016-0195-4

Integrated analysis of omics data using microRNA-target mRNA network and PPI network reveals regulation of Gnai1 function in the spinal cord of Ews/Ewsr1 KO mice
Cited by: 5
Author(s): Chai Jin Lee, Hongryul Ahn, Sean Bong Lee, Jong Yeon Shin, Woong-Yang Park, Jong‐Il Kim, Jung‐Hee Lee, Hoon Ryu, Sun Kim
Software Mentions: 1
Published: over 8 years ago

10.1186/s12920-021-00981-4

The identification of novel gene mutations for degenerative lumbar spinal stenosis using whole-exome sequencing in a Chinese cohort
Cited by: 2
Author(s): Xin Jiang, Chen Dong
Software Mentions: 1
Published: over 3 years ago

10.1186/1755-8794-3-37

The NRF2-mediated oxidative stress response pathway is associated with tumor cell resistance to arsenic trioxide across the NCI-60 panel
Cited by: 42
Author(s): Qian Liu, Hao Zhang, Lisa Smeester, Fei Zou, Matthew J. Kesic, Ilona Jaspers, Jingbo Pi, Rebecca C. Fry
Software Mentions: 1
Published: over 14 years ago

10.1038/srep13488

Quantitative analysis on electric dipole energy in Rashba band splitting
Cited by: 12
Author(s): Jisook Hong, Jun‐Won Rhim, Changyoung Kim, Seung Ryong Park, Ji Hoon Shim
Software Mentions: 1
Published: about 9 years ago

10.18632/aging.101253

Identification of an 88-microRNA signature in whole blood for diagnosis of hepatocellular carcinoma and other chronic liver diseases
Cited by: 17
Author(s): Xiao Ran Long, Yaojun Zhang, Mei Yin Zhang, Keng Chen, Xi Zheng, Hui Yun Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12920-016-0214-5

Reproducible detection of disease-associated markers from gene expression data
Cited by: 2
Author(s): Katsuhiro Omae, Osamu Komori, Shinto Eguchi
Software Mentions: 1
Published: over 8 years ago

10.1186/1755-8794-1-53

A global transcriptional view of apoptosis in human T-cell activation
Cited by: 24
Author(s): Min Wang, Dirk Windgassen, Eleftherios T. Papoutsakis
Software Mentions: 1
Published: about 16 years ago

10.1038/srep14900

Trends and variability of the atmosphere–ocean turbulent heat flux in the extratropical Southern Hemisphere
Cited by: 5
Author(s): Agnieszka Herman
Software Mentions: 1
Published: about 9 years ago

10.1186/1755-8794-2-36

MLL rearrangements in pediatric acute lymphoblastic and myeloblastic leukemias: MLL specific and lineage specific signatures
Cited by: 40
Author(s): Andrea Zangrando, Marta Campo Dell’Orto, Geertruy te Kronnie, Giuseppe Basso
Software Mentions: 1
Published: over 15 years ago

10.1038/srep15243

A scanning acoustic microscope discriminates cancer cells in fluid
Cited by: 38
Author(s): Katsutoshi Miura, Seiji Yamamoto
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-12-381

Combined analysis of transcriptome and metabolite data reveals extensive differences between black and brown nearly-isogenic soybean (Glycine max) seed coats enabling the identification of pigment isogenes
Cited by: 39
Author(s): Nik Kovinich, Ammar Saleem, John T. Arnason, Brian Miki
Software Mentions: 1
Published: over 13 years ago

10.1186/1755-8794-4-77

Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features
Cited by: 38
Author(s): Vilde Drageset Haakensen, Ole Christian Lingjærde, Torben Lüders, Margit Riis, Aleix Prat, Melissa A. Troester, Marit Muri Holmen, Jan Ole Frantzen, Linda Romundstad, Dina Navjord, Ida K. Bukholm, Tom B⊘rge Johannesen, Charles M. Perou, Giske Ursin, Vessela N. Kristensen, Anne‐Lise Børresen‐Dale, Åslaug Helland
Software Mentions: 1
Published: about 13 years ago

10.1186/1755-8794-2-59

Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family
Cited by: 53
Author(s): Sandeep Sanga, Bradley M. Broom, Vittorio Cristini, Mary E. Edgerton
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2164-11-65

Tungsten carbide cobalt nanoparticles exert hypoxia-like effects on the gene expression level in human keratinocytes
Cited by: 41
Author(s): Wibke Busch, Dana Kühnel, Kristin Schirmer, Stefan Scholz
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-4-22

Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
Cited by: 247
Author(s): Wim Crielaard, Egija Zaura, Annemarie Schuller, Susan M. Huse, R.C. Montijn, Bart J. F. Keijser
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-8-281

Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis
Cited by: 174
Author(s): Yong‐Mei Bi, Rong-Lin Wang, Tong Zhu, Steven J. Rothstein
Software Mentions: 1
Published: over 17 years ago

10.1186/s12911-019-0912-y

The "Begin Exploring Fertility Options, Risks and Expectations" (BEFORE) decision aid: development and alpha testing of a fertility tool for premenopausal breast cancer patients
Cited by: 18
Author(s): Brittany Speller, Kelly Metcalfe, Erin Kennedy, Marcia Facey, Ellen Greenblatt, Adena Scheer, Ellen Warner, Anil A. Joy, Frances C. Wright, Nancy N. Baxter
Software Mentions: 1
Published: about 5 years ago

10.1186/s12911-017-0416-6

The effect of a test ordering software intervention on the prescription of unnecessary laboratory tests - a randomized controlled trial
Cited by: 19
Author(s): Carlos Martins, Andréia Teixeira, Luís Filipe Azevedo, Luísa Maria Barbosa Sá, Paulo Alexandre Azevedo Pereira Santos, Nazaré Couto, Altamiro Costa‐Pereira, Alberto Augusto Oliveira Pinto Hespanhol, Cristina Santos
Software Mentions: 1
Published: almost 8 years ago

10.1186/1472-6947-12-136

A multiscale and multiparametric approach for modeling the progression of oral cancer
Cited by: 32
Author(s): Konstantinos Exarchos, Yorgos Goletsis, Dimitrios I. Fotiadis
Software Mentions: 1
Published: about 12 years ago

Projects: cran: SAM

Papers Mentioning SAM 4,566