cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0199508

Taste and odor preferences following Roux-en-Y surgery in humans
Cited by: 27
Author(s): Hannah D. Kittrell, William Graber, Evelyn Mariani, Krzysztof Czaja, A. Hajnal, Patricia M. Di Lorenzo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0241455

S-adenosyl methionine synthetase SAMS-5 mediates dietary restriction-induced longevity in Caenorhabditis elegans
Cited by: 5
Author(s): Chia Chang Chen, Chiao Yin Lim, Pin Jung Lee, Ao Lin Hsu, Tsui Ting Ching
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0197372

Small molecule inhibitors and CRISPR/Cas9 mutagenesis demonstrate that SMYD2 and SMYD3 activity are dispensable for autonomous cancer cell proliferation
Cited by: 44
Author(s): Michael J. Thomenius, Jennifer Totman, Darren M. Harvey, Lorna H. Mitchell, Thomas V. Riera, Kat Cosmopoulos, Alexandra R. Grassian, Christine Klaus, Megan Foley, Elizabeth A. Admirand, Haris Jahić, Christina R. Majer, Tim J. Wigle, Suzanne L. Jacques, Jodi Gureasko, Dorothy Brach, Trupti Lingaraj, Kip A. West, Sherri Smith, Nathalie Rioux, Nigel J. Waters, Cuyue Tang, Alejandra Raimondi, Michael J. Munchhof, James E. Mills, Scott Ribich, Margaret Porter Scott, Kevin W. Kuntz, William P. Janzen, Mikel P. Moyer, J. Joshua Smith, Richard Chesworth, Robert A. Copeland, P.A. Boriack-Sjodin
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0088217

pY RNA1-s2: A Highly Retina-Enriched Small RNA That Selectively Binds to Matrin 3 (Matr3)
Cited by: 16
Author(s): Fumiyoshi Yamazaki, Hyun Hee Kim, Pierre Lau, Cheol Kyu Hwang, P. Michael Iuvone, David C. Klein, Samuel Clokie
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0122483

Mapping Molecular Differences and Extracellular Matrix Gene Expression in Segmental Outflow Pathways of the Human Ocular Trabecular Meshwork
Cited by: 75
Author(s): Janice A. Vranka, Jeremy T. Bradley, Yong Yang, Kate E. Keller, Ted S. Acott
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0141979

Cytochrome P450 Oxidoreductase Influences CYP2B6 Activity in Cyclophosphamide Bioactivation
Cited by: 26
Author(s): Ibrahim El-Serafi, Parvaneh Afsharian, Ali Moshfegh, Manal M. Hassan, Ylva Terelius
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0073984

Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches
Cited by: 14
Author(s): Sri Devan Appasamy, Effirul Ikhwan Ramlan, Mohd Firdaus-Raih
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0039477

Bovine Polledness – An Autosomal Dominant Trait with Allelic Heterogeneity
Cited by: 111
Author(s): Ivica Međugorac, Doris Seichter, Alexander Graf, Ingolf Ruß, Helmut Blum, Karl Heinrich Göpel, Sophie Rothammer, M. Förster, Stefan Krebs
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0013596

Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding
Cited by: 1
Author(s): Young Ki Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0087268

Global Gene Expression Analysis Reveals a Link between NDRG1 and Vesicle Transport
Cited by: 24
Author(s): Hanne A. Askautrud, Elisabet Gjernes, Gjermund Gunnes, Marit Sletten, Douglas T. Ross, Anne Lise Børresen-Dale, Nina Iversen, Michael A. Tranulis, Eirik Frengen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0232928

Large EEG amplitude effects are highly similar across Necker cube, smiley, and abstract stimuli
Cited by: 11
Author(s): Ellen Joos, Anne Giersch, Lukas Hecker, Julia Schipp, Sven Heinrich, Ludger Tebartz van Elst, Jürgen Kornmeier
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0197082

Identification of a peptide inhibitor for the histone methyltransferase WHSC1
Cited by: 19
Author(s): Michael J. Morrison, P.A. Boriack-Sjodin, Kerren K. Swinger, Tim J. Wigle, D Sadalge, Kevin W. Kuntz, Margaret Porter Scott, William P. Janzen, Richard Chesworth, Kenneth W. Duncan, Darren M. Harvey, John W. Lampe, Lorna H. Mitchell, Robert A. Copeland
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0079413

Transcriptome Analysis of PPARγ Target Genes Reveals the Involvement of Lysyl Oxidase in Human Placental Cytotrophoblast Invasion
Cited by: 22
Author(s): N. Segond, Séverine A. Degrelle, Sarah Berndt, É. Clouqueur, Christine Rouault, Bruno Saubaméa, Philippe Dessen, Keith S. K. Fong, Katalin Csiszàr, Josette Badet, Danièle Évain-Brion, Thierry Fournier
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0006077

A Novel In Vitro Multiple-Stress Dormancy Model for Mycobacterium tuberculosis Generates a Lipid-Loaded, Drug-Tolerant, Dormant Pathogen
Cited by: 368
Author(s): Chirajyoti Deb, Chang-Muk Lee, Vinod S. Dubey, Jaiyanth Daniel, Bassam Abomoelak, Tatiana D. Sirakova, Santosh Pawar, Linda Rogers, Pappachan E. Kolattukudy
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0014143

Molecular Characterization of c-Abl/c-Src Kinase Inhibitors Targeted against Murine Tumour Progenitor Cells that Express Stem Cell Markers
Cited by: 18
Author(s): Thomas Kruewel, Silvia Schenone, Marco Radi, Giovanni Maga, Astrid Rohrbeck, Maurizio Botta, Jürgen Borlak
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0239980

Can we accurately predict where we look at paintings?
Cited by: 3
Author(s): Olivier Le Meur, Tugdual Le Pen, Rémi Cozot
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0065683

ToP: A Trend-of-Disease-Progression Procedure Works Well for Identifying Cancer Genes from Multi-State Cohort Gene Expression Data for Human Colorectal Cancer
Cited by: 13
Author(s): Feng-Hsiang Chung, Henry Hsin‐Chung Lee, Hoong-Chien Lee
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0033293

Functional Connectivity of Pain-Mediated Affect Regulation in Borderline Personality Disorder
Cited by: 81
Author(s): Inga Niedtfeld, Peter Kirsch, Lars Schulze, Sabine C. Herpertz, Martin Bohus, Christian Schmahl
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0219745

Severe acute malnutrition and mortality in children in the community: Comparison of indicators in a multi-country pooled analysis
Cited by: 31
Author(s): Catherine Schwinger, Michael Golden, Emmanuel Grellety, Dominique Roberfroid, Benjamin Guesdon
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0050663

Identifying Conserved and Novel MicroRNAs in Developing Seeds of Brassica napus Using Deep Sequencing
Cited by: 59
Author(s): Ana Paula Körbes, Ronei Dorneles Machado, Frank Guzmán, Maurício Pereira Almerão, Luiz Felipe Valter de Oliveira, Guilherme Loss-Morais, Andreia Carina Turchetto‐Zolet, Alexandro Cagliari, Felipe dos Santos Maraschin, Márcia Margis‐Pinheiro, Rogério Margis
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0147500

Characterization of Heterogeneous Prostate Tumors in Targeted Pten Knockout Mice
Cited by: 12
Author(s): Hanneke Korsten, Angelique C. J. Ziel-van der Made, Wytske M. van Weerden, Theodorus H. van der Kwast, Jan Trapman, Petra W. van Duijn
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0250283

Metagenomic insights into mixotrophic denitrification facilitated nitrogen removal in a full-scale A2/O wastewater treatment plant
Cited by: 8
Author(s): Shulei Liu, Yasong Chen, Lin Xiao
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0035425

Effects of DHA- Rich n-3 Fatty Acid Supplementation on Gene Expression in Blood Mononuclear Leukocytes: The OmegAD Study
Cited by: 74
Author(s): Inger Vedin, Tommy Cederholm, Yvonne Freund‐Levi, Hans Basun, Anita Garlind, Gerd Faxén Irving, Maria Eriksdotter, Lars‐Olof Wahlund, Ingrid Dahlman, Jan Palmblad
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0005992

Identification of Global Transcriptional Dynamics
Cited by: 16
Author(s): Eric Yang, Richard R. Almon, Debra C. DuBois, W J Jusko, Ioannis P. Androulakis
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0047537

Clinical Relevance of Loss of 11p15 in Primary and Metastatic Breast Cancer: Association with Loss of PRKCDBP Expression in Brain Metastases
Cited by: 20
Author(s): Harriet Wikman, Bettina Sielaff-Frimpong, Jolanthe Kropidlowski, Isabell Witzel, Karin Milde‐Langosch, Guido Sauter, Manfred Westphal, Katrin Lamszus, Klaus Pantel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0001479

Genomewide Expression Analysis in Zebrafish mind bomb Alleles with Pancreas Defects of Different Severity Identifies Putative Notch Responsive Genes
Cited by: 15
Author(s): Ashok N. Hegde, Nick Chuanxin Qiu, Xuehui Qiu, Soo Yei Ho, Kenny Qi-Ye Tay, Joshy George, Felicia Ng, Kunde Ramamoorthy Govindarajan, Zhiyuan Gong, Sinnakaruppan Mathavan, Yun-Jin Jiang
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0054918

A Comparison of Ku0063794, a Dual mTORC1 and mTORC2 Inhibitor, and Temsirolimus in Preclinical Renal Cell Carcinoma Models
Cited by: 53
Author(s): Hao Zhang, Dror Berel, Yanping Wang, Ping Li, Neil A. Bhowmick, Robert A. Figlin, Hyung L. Kim
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0244964

Harmonic organisation conveys both universal and culture-specific cues for emotional expression in music
Cited by: 24
Author(s): George Athanasopoulos, Tuomas Eerola, Imre Lahdelma, Μάξιμος Καλιακάτσος-Παπακώστας
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0033201

MicroRNA Expression Is Down-Regulated and Reorganized in Prefrontal Cortex of Depressed Suicide Subjects
Cited by: 270
Author(s): Neil R. Smalheiser, Giovanni Lugli, Hooriyah S. Rizavi, Vetle I. Torvik, Gustavo Turecki, Yogesh K. Dwivedi
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0184702

Multi-layered mutation in hedgehog-related genes in Gorlin syndrome may affect the phenotype
Cited by: 24
Author(s): Shin Onodera, Akiko Saito, Daigo Hasegawa, Nana Morita, Kiichi Watanabe, Takeshi Nomura, Takahiko Shibahara, Shinsuke Ohba, Akira Yamaguchi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0149086

A Model-Based Joint Identification of Differentially Expressed Genes and Phenotype-Associated Genes
Cited by: 2
Author(s): Samuel Sunghwan Cho, Yongkang Kim, Joon Yoon, Minseok Seo, Su‐Kyung Shin, Eun‐Young Kwon, Sang Hoon Kim, Yun Jung Bae, Seungyeoun Lee, Mi‐Kyung Sung, Myung‐Sook Choi, Taesung Park
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0084570

Fluorescence-Based Classification of Caribbean Coral Reef Organisms and Substrates
Cited by: 22
Author(s): David G. Zawada, Charles H. Mazel
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0129056

The Influence of Emotion on Keyboard Typing: An Experimental Study Using Auditory Stimuli
Cited by: 23
Author(s): Po Ming Lee, Wei Hsuan Tsui, Tzu‐Chien Hsiao
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0048814

Differential Expression of Exosomal microRNAs in Prefrontal Cortices of Schizophrenia and Bipolar Disorder Patients
Cited by: 197
Author(s): Meredith G. Banigan, Patricia F. Kao, James Kozubek, Ashley R. Winslow, Juan Medina, Joan Costa, Andrea Schmitt, Anja Schneider, Howard Cabral, Ozge Cagsal‐Getkin, Charles R. Vanderburg, Ivana Delalle
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0013494

Study on Differences in the Pathology, T Cell Subsets and Gene Expression in Susceptible and Non-Susceptible Hosts Infected with Schistosoma japonicum
Cited by: 36
Author(s): Weibin Jiang, Yang Hong, Jinbiao Peng, Zhiqiang Fu, Xiao Feng, Jinming Liu, Yiting Shi, Jiaojiao Lin
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0204114

A multiple hypothesis approach to explain species richness patterns in neotropical stream-dweller fish communities
Cited by: 10
Author(s): Thiago Bernardi Vieira, Carla Simone Pavanelli, Lílian Casatti, Welber Senteio Smith, Evanilde Benedito, Rosana Mazzoni, Jorge Iván Sánchez-Botero, Danielle Sequeira Garcez, Sergio Maia Queiroz Lima, Paulo Santos Pompeu, Carlos Sérgio Agostinho, Luciano Fogaça de Assis Montag, Jansen Zuanon, Pedro de Podestà Uchôa de Aquino, Maurício Cetra, Francisco Leonardo Tejerina‐Garro, Luiz Fernando Duboc, Ruanny Casarim Corrêa, María Angélica Pérez‐Mayorga, Gabriel Lourenço Brejão, Nadayca Thayane Bonani Mateussi, Miriam A. Castro, Rafael P. Leitão, Fernando Pereira de Mendonça, Leandra Rose Palheta da Silva, Renata G. Frederico, Paulo de Marco Júnior
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0019137

Upregulation of MiR-155 in Nasopharyngeal Carcinoma is Partly Driven by LMP1 and LMP2A and Downregulates a Negative Prognostic Marker JMJD1A
Cited by: 91
Author(s): Zhiheng Du, Li‐Fu Hu, Hai Yun Wang, Yan Li, Yi Xin Zeng, Jian Yong Shao, Ingemar Ernberg
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0006139

Modulation of Gene Expression in Actinobacillus pleuropneumoniae Exposed to Bronchoalveolar Fluid
Cited by: 23
Author(s): Abdul G. Lone, Vincent Deslandes, John H. E. Nash, Mario Jacques, Janet I. MacInnes
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0003329

Evolution of the Aging Brain Transcriptome and Synaptic Regulation
Cited by: 274
Author(s): Patrick Loerch, Tao Lu, Kelly A. Dakin, James M. Vann, Adrian M. Isaacs, Chengiz Geula, Jianbin Wang, Y. Albert Pan, Dana Gabuzda, Cheng Li, Tomas A. Prolla, Bruce A. Yankner
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0113772

Transcriptomic Analysis of Grape (Vitis vinifera L.) Leaves after Exposure to Ultraviolet C Irradiation
Cited by: 23
Author(s): Hongwei Xi, Lifeng Ma, Guotian Liu, Nian Wang, Junfang Wang, Lina Wang, Zhanwu Dai, Shaohua Li, Lijun Wang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0023294

Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
Cited by: 176
Author(s): Dominik Gront, Daniel W. Kulp, Robert Vernon, Charlie E. M. Strauss, David Baker
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0103047

Construction and Analysis of the Protein-Protein Interaction Networks Based on Gene Expression Profiles of Parkinson's Disease
Cited by: 57
Author(s): Hindol Rakshit, Nitin Rathi, Dilip Roy
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0111146

Molecular Integrative Clustering of Asian Gastric Cell Lines Revealed Two Distinct Chemosensitivity Clusters
Cited by: 2
Author(s): Meng Ling Choong, Shan Tan, Tuan Zea Tan, Sravanthy Manesh, Anna Ngo, Jacklyn Wei Yan Yong, Henry Yang, May Ann Lee
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0026502

An Integrated Analysis of miRNA and mRNA Expressions in Non-Small Cell Lung Cancers
Cited by: 70
Author(s): Lijiao Ma, Ying Huang, Wenxiu Zhu, Shuling Zhou, Ji Zhou, Fang Zeng, Xiaoguang Liu, Yongkui Zhang, Jun Yu
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0176154

Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses
Cited by: 26
Author(s): Konstantin Yarygin, Alexander V. Tyakht, Andrey K. Larin, Elena S. Kostryukova, Sergei Kolchenko, Vilgelm Bitner, Dmitry Alexeev
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0104026

Geographical and Temporal Body Size Variation in a Reptile: Roles of Sex, Ecology, Phylogeny and Ecology Structured in Phylogeny
Cited by: 25
Author(s): Pedro Aragón, Patrick S. Fitze
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0025519

Multi-Tasking Role of the Mechanosensing Protein Ankrd2 in the Signaling Network of Striated Muscle
Cited by: 31
Author(s): Anna Belgrano, Ljiljana Rakićević, Lorenza Mittempergher, Stefano Campanaro, Valentina Martinelli, Vincent Mouly, Giorgio Valle, Snežana Kojić, Georgine Faulkner
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0025364

Network Based Consensus Gene Signatures for Biomarker Discovery in Breast Cancer
Cited by: 19
Author(s): Holger Fröhlich
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0029063

Transcriptional Response of Zebrafish Embryos Exposed to Neurotoxic Compounds Reveals a Muscle Activity Dependent hspb11 Expression
Cited by: 28
Author(s): Nils Klüver, Lixin Yang, Wibke Busch, Katja Scheffler, Patrick Renner, Uwe Strähle, Stefan Scholz
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0124801

Towards Unraveling the Human Tooth Transcriptome: The Dentome
Cited by: 21
Author(s): Shijia Hu, Joel S. Parker, J. Timothy Wright
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0168617

The C-Terminal SynMuv/DdDUF926 Domain Regulates the Function of the N-Terminal Domain of DdNKAP
Cited by: 3
Author(s): Bhagyashri D. Burgute, Vivek S. Peche, Rolf Müller, Jan Matthias, Berthold Gaßen, Ludwig M. Eichinger, Gernot Glöckner, Angelika A. Noegel
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0001664

A Specific and Rapid Neural Signature for Parental Instinct
Cited by: 220
Author(s): Morten L. Kringelbach, Annukka Lehtonen, Sarah Squire, Allison G. Harvey, Michelle G. Craske, Ian Holliday, Alexander L. Green, Tipu Z. Aziz, P. Hansen, Piers L. Cornelissen, Alan Stein
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0071025

Exposure of Clinical MRSA Heterogeneous Strains to β-Lactams Redirects Metabolism to Optimize Energy Production through the TCA Cycle
Cited by: 19
Author(s): Mignon Keaton, Roberto R. Rosato, Konrad Plata, Christopher R. Singh, Adriana E. Rosato
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0082164

Broad-Scale Phosphoprotein Profiling of Beta Adrenergic Receptor (β-AR) Signaling Reveals Novel Phosphorylation and Dephosphorylation Events
Cited by: 11
Author(s): Andrzej Chruscinski, Harvir Singh, Steven M. Chan, Paul J. Utz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0189695

Molecular analysis of stomach contents reveals important grass seeds in the winter diet of Baird's and Grasshopper sparrows, two declining grassland bird species
Cited by: 9
Author(s): Mieke Titulaer, Alicia Melgoza‐Castillo, Arvind O. Panjabi, Alejandro Sánchez-Flores, José Hugo Martínez-Guerrero, Alberto Macías‐Duarte, Jesús A. Fernández
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0040240

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility
Cited by: 36
Author(s): Iovanna Pandelova, Melania Figueroa, Larry J. Wilhelm, Viola A. Manning, Aakash N. Mankaney, Todd C. Mockler, Lynda M. Ciuffetti
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0035867

Transcriptional Analysis of Arabidopsis thaliana Response to Lima Bean Volatiles
Cited by: 17
Author(s): Sufang Zhang, Jianing Wei, Le Kang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0051961

A Combined Approach for the Assessment of Cell Viability and Cell Functionality of Human Fibrochondrocytes for Use in Tissue Engineering
Cited by: 16
Author(s): Ingrid Garzón, Víctor Carriel, Ana Belén Marín-Fernández, Ana Celeste Oliveira, Juan Garrido-Gómez, Antonìo Campos, María del Carmen Sánchez-Quevedo, Miguel Alaminos
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0139165

Identification of Biomarker and Co-Regulatory Motifs in Lung Adenocarcinoma Based on Differential Interactions
Cited by: 6
Author(s): Ning Zhao, Yongjing Liu, Zhiqiang Chang, Kening Li, Rui Zhang, Yuanshuai Zhou, Fujun Qiu, Xiaole Han, Yan Xu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0003840

Pattern Recognition in Pulmonary Tuberculosis Defined by High Content Peptide Microarray Chip Analysis Representing 61 Proteins from M. tuberculosis
Cited by: 71
Author(s): Simani Gaseitsiwe, Davide Valentini, Shahnaz Mahdavifar, Isabelle Magalhaes, Daniel F. Hoft, Johannes Zerweck, Mike Schutkowski, Jan Andersson, Marie Reilly, Markus Maeurer
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0005763

Detection of Transgenerational Spermatogenic Inheritance of Adult Male Acquired CNS Gene Expression Characteristics Using a Drosophila Systems Model
Cited by: 25
Author(s): Abhay Sharma, Priyanka Singh
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0037510

Assessment Method for a Power Analysis to Identify Differentially Expressed Pathways
Cited by: 16
Author(s): Shailesh Tripathi, Frank Emmert‐Streib
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0045965

MiR-145 Regulates Epithelial to Mesenchymal Transition of Breast Cancer Cells by Targeting Oct4
Cited by: 59
Author(s): Jiajia Hu, Hua Guo, Hongyan Li, Yan Liu, Jingjing Liu, Liwei Chen, Jin Zhang, Ning Zhang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0162534

Challenges of Estimating the Annual Caseload of Severe Acute Malnutrition: The Case of Niger
Cited by: 7
Author(s): Hedwig Deconinck, Anaïs A. Pesonen, Mahaman Elh Hallarou, Jean Christophe J.C. Gérard, André Briend, Philippe Donnen, Jean Macq
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0184057

The latitudinal diversity gradient in South American mammals revisited using a regional analysis approach: The importance of climate at extra-tropical latitudes and history towards the tropics
Cited by: 7
Author(s): Paula Nilda Fergnani, Adriana Ruggiero
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0111640

Patient-Based Transcriptome-Wide Analysis Identify Interferon and Ubiquination Pathways as Potential Predictors of Influenza A Disease Severity
Cited by: 18
Author(s): Long Hoàng, Thomas Tolfvenstam, Eng Eong Ooi, Chiea‐Chuen Khor, Ahmand Nazri Mohamed Naim, Eliza Xin Pei Ho, Swee Hoe Ong, Heiman Wertheim, Annette Fox, Chau Nguyen, Ngoc My Nghiem, Tuan Manh Ha, Anh Thi Tran, Paul Tambayah, Raymond Tzer Pin Lin, Chariya Sangsajja, Weerawat Manosuthi, Chareon Chuchottaworn, Piamlarp Sansayunh, Tawee Chotpitayasunondh, Piyarat Suntarattiwong, Kulkanya Chokephaibulkit, Pilaipan Puthavathana, Menno D. de Jong, Jeremy Farrar, H. Rogier van Doorn, Martin L. Hibberd
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0179865

The role of Patient Health Engagement Model (PHE-model) in affecting patient activation and medication adherence: A structural equation model
Cited by: 92
Author(s): Guendalina Graffigna, Serena Barello, Andrea Bonanomi
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0047635

Identification of a CO2 Responsive Regulon in Bordetella
Cited by: 23
Author(s): Sara E. Hester, Minghsun Lui, Tracy L. Nicholson, Daryl Nowacki, Eric T. Harvill
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0045683

Demographic Amplification of Climate Change Experienced by the Contiguous United States Population during the 20th Century
Cited by: 4
Author(s): Jason Samson, Dominique Berteaux, Brian J. McGill, Murray M. Humphries
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0069282

Primary Respiratory Chain Disease Causes Tissue-Specific Dysregulation of the Global Transcriptome and Nutrient-Sensing Signaling Network
Cited by: 42
Author(s): Zhe Zhang, Mai Tsukikawa, Min Peng, Erzsébet Polyák, Eiko Nakamaru‐Ogiso, Julian Ostrovsky, Shana E. McCormack, Emily Place, Colleen Clarke, Gail Reiner, Elizabeth McCormick, Eric Rappaport, Richard R. de Haas, Joseph A. Baur, Marni J. Falk
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0118029

Comparison of Effects of p53 Null and Gain-of-Function Mutations on Salivary Tumors in MMTV-Hras Transgenic Mice
Cited by: 3
Author(s): Dadi Jiang, Catherine I. Dumur, H. Davis Massey, Viswanathan Ramakrishnan, Mark A. Subler, Jolene J. Windle
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0010267

Transcriptional Analysis of the Pre-Erythrocytic Stages of the Rodent Malaria Parasite, Plasmodium yoelii
Cited by: 20
Author(s): Calvin T. Williams, Abdu F. Azad
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0049011

Please Don't! The Automatic Extrapolation of Dangerous Intentions
Cited by: 8
Author(s): Alessia Tessari, Giovanni Ottoboni, Andrea Mazzatenta, Arcangelo Merla, Roberto Nicoletti
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0230452

Acute malnutrition recovery energy requirements based on mid-upper arm circumference: Secondary analysis of feeding program data from 5 countries, Combined Protocol for Acute Malnutrition Study (ComPAS) Stage 1
Cited by: 14
Author(s): Rachel P. Chase, Marko Kerac, Alison Grant, Mark Manary, André Briend, Charles Opondo, Jeanette Bailey
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0002293

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization
Cited by: 210
Author(s): Yann Saint-Georges, Mathilde Garcia, Thierry Delaveau, Laurent Jourdren, Stéphane Le Crom, Sophie Lemoine, Véronique Tanty, Frédéric Devaux, Claude Jacq
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0152983

Brain Cortical Thickness Differences in Adolescent Females with Substance Use Disorders
Cited by: 15
Author(s): Peter K. Boulos, Manish Dalwani, Jody Tanabe, Susan K. Mikulich‐Gilbertson, Marie T. Banich, Thomas J. Crowley, Joseph T. Sakai
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0014049

Menin Links the Stress Response to Genome Stability in Drosophila melanogaster
Cited by: 6
Author(s): Maria Papaconstantinou, Alicia N. Pepper, Ying Wu, Dahlia Kasimer, Tim Westwood, Ana Regina Nascimento Campos, Pierre-André Bédard
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0007315

Cancer Genomics Identifies Regulatory Gene Networks Associated with the Transition from Dysplasia to Advanced Lung Adenocarcinomas Induced by c-Raf-1
Cited by: 33
Author(s): Astrid Rohrbeck, Jürgen Borlak
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0009482

Increasing Alternative Promoter Repertories Is Positively Associated with Differential Expression and Disease Susceptibility
Cited by: 14
Author(s): Song Liu
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0125171

MicroRNA-27a Contributes to Rhabdomyosarcoma Cell Proliferation by Suppressing RARA and RXRA
Cited by: 21
Author(s): Lucia Tombolan, Matteo Zampini, Silvia Casara, Elena Boldrin, Angelica Zin, Gianni Bisogno, Angelo Rosolen, Cristiano De Pittà, Gerolamo Lanfranchi
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0178485

Global transcriptome profiling identifies KLF15 and SLC25A10 as modifiers of adipocytes insulin sensitivity in obese women
Cited by: 25
Author(s): Agné Kulyté, Anna Ehrlund, Peter Arner, Ingrid Dahlman
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0035553

A Unique Combination of Male Germ Cell miRNAs Coordinates Gonocyte Differentiation
Cited by: 72
Author(s): Skye C McIver, Simone J. Stanger, Danielle M. Santarelli, Shaun D. Roman, Brett Nixon, Eileen A. McLaughlin
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0038870

A Bioinformatics Filtering Strategy for Identifying Radiation Response Biomarker Candidates
Cited by: 17
Author(s): Jung Hun Oh, Harry P. Wong, Xiaowei Wang, Joseph O. Deasy
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0025357

Metabolomic Profiling from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Targeted LC/MS/MS: Application in Sarcoma
Cited by: 72
Author(s): Andrew D. Kelly, Susanne B. Breitkopf, Min Yuan, Jeffrey D. Goldsmith, Dimitrios Spentzos, John M. Asara
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0054602

DNA Damage and Transcriptional Changes in the Gills of Mytilus galloprovincialis Exposed to Nanomolar Doses of Combined Metal Salts (Cd, Cu, Hg)
Cited by: 61
Author(s): L Varotto, Stefania Domeneghetti, Umberto Rosani, Chiara Manfrin, M.P. Cajaraville, Stefano Raccanelli, Alberto Pallavicini, Paola Venier
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0071755

Distinct Gene Expression Signatures in Lynch Syndrome and Familial Colorectal Cancer Type X
Cited by: 30
Author(s): Mev Dominguez‐Valentin, Christina Therkildsen, Srinivas Veerla, Mats Jönsson, Inge Bernstein, Åke Borg, Mef Nilbert
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0080738

Signature of Circulating MicroRNAs as Potential Biomarkers in Vulnerable Coronary Artery Disease
Cited by: 163
Author(s): Jingyi Ren, Jing Zhang, Ning Xu, Han Guan-ping, Qiang Geng, Junxian Song, Sufang Li, Jianqing Zhao, Hong Chen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0046763

Transcriptome Analysis of Quantitative Resistance-Specific Response upon Ralstonia solanacearum Infection in Tomato
Cited by: 83
Author(s): T. Ishihara, Ichiro Mitsuhara, Hideki Takahashi, Kazuhiro Nakaho
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0027384

IRF8 Governs Expression of Genes Involved in Innate and Adaptive Immunity in Human and Mouse Germinal Center B Cells
Cited by: 45
Author(s): Dong‐Mi Shin, Chang‐Hoon Lee, Herbert C. Morse
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0030168

Differential Gene Expression between African American and European American Colorectal Cancer Patients
Cited by: 79
Author(s): Biljana Jovov, Félix Araújo-Pérez, Carlie S. Sigel, Jeran K. Stratford, Amber N. McCoy, Jen Jen Yeh, Temitope O. Keku
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0020341

Identification of miRs-143 and -145 that Is Associated with Bone Metastasis of Prostate Cancer and Involved in the Regulation of EMT
Cited by: 202
Author(s): Xinsheng Peng, Wei Guo, Liu Tiejian, Xi Wang, Xiang-An Tu, Dafu Xiong, Song Chen, Yingrong Lai, Hong Du, Guangfu Chen, Guanglin Liu, Yubo Tang, Shuai Huang, Xuenong Zou
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0024595

Suppression of Breast Tumor Growth and Metastasis by an Engineered Transcription Factor
Cited by: 46
Author(s): Adriana S. Beltran, Angela Russo, Haydee Lara, Cheng Fan, Paul M. Lizardi, Pilar Blancafort
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0158991

Affective Pictures and the Open Library of Affective Foods (OLAF): Tools to Investigate Emotions toward Food in Adults
Cited by: 31
Author(s): Laura Miccoli, R. Delgado, Pedro Guerra, Francesco Versace, Sonia Rodríguez‐Ruiz, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0149982

The Economic Impact of Eradicating Peste des Petits Ruminants: A Benefit-Cost Analysis
Cited by: 77
Author(s): B. Jones, Karl M. Rich, Jeffrey C. Mariner, J. Anderson, Martyn Jeggo, Sam Thevasagayam, Yi Cai, A. R. Peters, P. L. Roeder
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0019321

The Involvement of SMILE/TMTC3 in Endoplasmic Reticulum Stress Response
Cited by: 26
Author(s): Maud Racapé, Jean‐Paul Duong Van Huyen, Richard Danger, Magali Giral, Françoise Bleicher, Yohann Foucher, Annaïck Pallier, Paul Pilet, Petra Tafelmeyer, Joanna Ashton‐Chess, Emilie Dugast, Ségolène Pettré, Béatrice Charreau, Jean‐Paul Soulillou, Sophie Brouard
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0020060

Non-Parametric Change-Point Method for Differential Gene Expression Detection
Cited by: 30
Author(s): Yao Wang, Chunguo Wu, Zhaohua Ji, Bing–Hong Wang, Yanchun Liang
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0044822

Distinct Functional Patterns of Gene Promoter Hypomethylation and Hypermethylation in Cancer Genomes
Cited by: 25
Author(s): Xiaopei Shen, Zheng He, Hongdong Li, Chen Yao, Yang Zhang, Lang He, Shan Li, Jian Huang, Zheng Guo
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0005987

Induction of Empathy by the Smell of Anxiety
Cited by: 188
Author(s): Alexander Prehn‐Kristensen, Christian D. Wiesner, Til Ole Bergmann, Stephan Wolff, Olav Jansen, H. Maximilian Mehdorn, Roman Ferstl, Bettina M. Pause
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0234343

Predictors of in-hospital mortality among under-five children with severe acute malnutrition in South-Western Uganda
Cited by: 7
Author(s): Timothy Nduhukire, Daniel Atwine, Rachel Luwaga, Joseph Byonanebye
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0154604

Manipulating the Prion Protein Gene Sequence and Expression Levels with CRISPR/Cas9
Cited by: 19
Author(s): Lech Kaczmarczyk, Ylva Mende, Branko Zevnik, Walker S. Jackson
Software Mentions: 1
Published: about 10 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566