cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1479-5876-9-30

MiRNA-205 modulates cellular invasion and migration via regulating zinc finger E-box binding homeobox 2 expression in esophageal squamous cell carcinoma cells
Cited by: 120
Author(s): Kayoko Matsushima, Hajime Isomoto, Naoyuki Yamaguchi, Naoki Inoue, Haruhisa Machida, Toshiyuki Nakayama, Tomayoshi Hayashi, Masaki Kitajima, Shigekazu Hidaka, Takeshi Nagayasu, Masahiro Nakashima, Kenta Ujifuku, Norisato Mitsutake, Akira Ohtsuru, Shunichi Yamashita, Manav Korpal, Yibin Kang, Philip A. Gregory, Gregory J. Goodall, Shigeru Kohno, Kazuwa Nakao
Software Mentions: 1
Published: over 15 years ago

10.1186/1479-5876-4-50

A gene expression signature associated with survival in metastatic melanoma
Cited by: 99
Author(s): Susanna Mandruzzato, Andrea Callegaro, Gianluca Turcatel, Samuela Francescato, Maria Cristina Montesco, Vanna Chiarion-Sileni, Simone Mocellin, Carlo Róssi, Silvio Bicciato, Ena Wang, Francesco M. Marincola, Paola Zanovello
Software Mentions: 1
Published: over 20 years ago

10.1186/s12967-020-02224-z

The prognostic value of a seven-lncRNA signature in patients with esophageal squamous cell carcinoma: a lncRNA expression analysis
Cited by: 7
Author(s): Nuo Qing Weng, Jun Chen, Jing Wen, Juan Shi, Mei Yin Zhang, Long Huang, Ji Liu, Xian Yang, Guo Liang Xu, Jianhua Fu, Hui Yun Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/1479-5876-10-41

Gene expression profiling of HCV genotype 3a initial liver fibrosis and cirrhosis patients using microarray
Cited by: 12
Author(s): Waqar Ahmad, Bushra Ijaz, Sajida Hassan
Software Mentions: 1
Published: over 14 years ago

10.1186/s12967-019-1981-5

Revealing the pathogenic changes of PAH based on multiomics characteristics
Cited by: 8
Author(s): Li Zhang, Shaokun Chen, Xixi Zeng, Da‐Cen Lin, Yumei Li, Long-Xin Gui, Mo‐Jun Lin
Software Mentions: 1
Published: about 7 years ago

10.1186/s12967-019-1923-2

Identification of two microRNA signatures in whole blood as novel biomarkers for diagnosis of nasopharyngeal carcinoma
Cited by: 25
Author(s): Wen Wen, Shi-Juan Mai, Huan‐Xin Lin, Mei‐Yin Zhang, Jialing Huang, Xin Hua, Chao Lin, Zhi‐Qing Long, Zheng Lu, Xiao‐Feng Sun, Sai-Lan Liu, Qi Yang, Qian Zhu, Huiyun Wang, Ling Guo
Software Mentions: 1
Published: over 7 years ago

10.1186/1479-5876-5-46

Monocyte derived dendritic cells generated by IFN-α acquire mature dendritic and natural killer cell properties as shown by gene expression analysis
Cited by: 72
Author(s): Mark Korthals, Nancy Safaian, Ralf Kronenwett, Dagmar Maihöfer, M. Schott, Claudia Papewalis, Elena Diaz Blanco, Meike Winter, Akos Czibere, Rainer Haas, Guido Kobbe, Roland Fenk
Software Mentions: 1
Published: about 19 years ago

10.1186/s12967-020-02485-8

Identification of a 4-lncRNA signature predicting prognosis of patients with non-small cell lung cancer: a multicenter study in China
Cited by: 5
Author(s): Ruiqi Wang, Xueying Long, Chao Ge, Mei‐Yin Zhang, Long Huang, Ningning Zhou, Yi Hu, Rui-Lei Li, Zhen Li, Dongni Chen, Lanjun Zhang, Zhesheng Wen, Shi-Juan Mai, Huiyun Wang
Software Mentions: 1
Published: about 6 years ago

10.1155/2013/726954

Metal Dyshomeostasis and Inflammation in Alzheimer’s and Parkinson’s Diseases: Possible Impact of Environmental Exposures
Cited by: 97
Author(s): Oddvar Myhre, Hans Utkilen, Nur Duale, Gunnar Brunborg, Tim Hofer
Software Mentions: 1
Published: almost 14 years ago

10.1155/2013/340731

Hepatic Gene Expression Profiling in Nrf2 Knockout Mice after Long-Term High-Fat Diet-Induced Obesity
Cited by: 20
Author(s): Dionysios V. Chartoumpekis, Panos G. Ziros, Apostolos Zaravinos, Ralitsa P. Iskrenova, Agathoklis Psyrogiannis, Venetsana Kyriazopoulou, Gerasimos P. Sykiotis, Ioannis Habeos
Software Mentions: 1
Published: almost 14 years ago

10.1155/2017/8510761

Effect of Chronic Administration of Resveratrol on Cognitive Performance during Aging Process in Rats
Cited by: 24
Author(s): Addí Rhode Navarro-Cruz, R. Ramírez y Ayala, Carlos Enrique Ochoa‐Velasco, Eduardo Brambila, Raúl Ávila-Sosa, Santiago Pérez-Fernández, Julio César Morales‐Medina, Patrícia Aguilar-Alonso
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/5030475

High Levels of β-Amyloid, Tau, and Phospho-Tau in Red Blood Cells as Biomarkers of Neuropathology in Senescence-Accelerated Mouse
Cited by: 17
Author(s): Rebecca Piccarducci, Deborah Pietrobono, Carolina Pellegrini, Simona Daniele, Matteo Fornai, Luca Antonioli, Maria Letizia Trincavelli, Corrado Blandizzi, Claudia Martini
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/3469840

Transcriptome Investigation and In Vitro Verification of Curcumin-Induced HO-1 as a Feature of Ferroptosis in Breast Cancer Cells
Cited by: 62
Author(s): Ruihua Li, Jing Zhang, Yongfeng Zhou, Qi Gao, Rui Wang, Yurong Fu, Lianwen Zheng, Hao Yu
Software Mentions: 1
Published: almost 6 years ago

10.1523/ENEURO.0531-19.2020

The Neural Dynamics of Individual Differences in Episodic Autobiographical Memory
Cited by: 10
Author(s): Raluca Petrican, Daniela J. Palombo, Signy Sheldon, Brian Levine
Software Mentions: 1
Published: over 6 years ago

10.1523/ENEURO.0022-19.2019

Transcriptomic Signatures of Postnatal and Adult Intrinsically Photosensitive Ganglion Cells
Cited by: 17
Author(s): Daniel Berg, Katherine Kartheiser, Megan L. Leyrer, Alexandra Saali, David M. Berson
Software Mentions: 1
Published: over 7 years ago

10.1186/1475-2891-8-36

Dietary patterns in clinical subtypes of multiple sclerosis: an exploratory study
Cited by: 41
Author(s): G Ramsaransing, Sanne A. Mellema, Jacques De Keyser
Software Mentions: 1
Published: about 17 years ago

10.1186/1475-2891-12-24

Associations between dietary patterns and gene expression profiles of healthy men and women: a cross-sectional study
Cited by: 58
Author(s): Annie Bouchard-Mercier, Ann-Marie Paradis, Iwona Rudkowska, Simone Lemieux, Patrick Couture, Marie‐Claude Vohl
Software Mentions: 1
Published: over 13 years ago

10.1186/s12937-018-0383-5

Severely malnourished children with a low weight-for-height have similar mortality to those with a low mid-upper-arm-circumference: II. Systematic literature review and meta-analysis
Cited by: 18
Author(s): Emmanuel Grellety, Michael Golden
Software Mentions: 1
Published: about 8 years ago

10.3390/nu11081819

The Effects of Caffeine on Metabolomic Responses to Muscle Contraction in Rat Skeletal Muscle
Cited by: 7
Author(s): S. Tsuda, Tatsuya Hayashi, Tatsuro Egawa
Software Mentions: 1
Published: about 7 years ago

10.3390/nu12123803

Piece of Cake: Coping with COVID-19
Cited by: 13
Author(s): Melissa J. Chee, Nikita K Koziel Ly, Hymie Anisman, Kimberly Matheson
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu13041054

Response to Malnutrition Treatment in Low Weight-for-Age Children: Secondary Analyses of Children 6–59 Months in the ComPAS Cluster Randomized Controlled Trial
Cited by: 6
Author(s): Jeanette Bailey, Natasha Lelijveld, Tanya Khara, Carmel Dolan, Heather Stobaugh, Kate Sadler, Richard Lako, André Briend, Charles Opondo, Marko Kerac, Mark Myatt
Software Mentions: 1
Published: over 5 years ago

10.3390/nu8050251

Challenges in Implementing the Integrated Community-Based Outpatient Therapeutic Program for Severely Malnourished Children in Rural Southern Ethiopia
Cited by: 18
Author(s): Elazar Tadesse, Eva‐Charlotte Ekström, Yemane Berhane
Software Mentions: 1
Published: over 10 years ago

10.1136/bmjopen-2018-027548

TAME trial: a multi-arm phase II randomised trial of four novel interventions for malnutrition enteropathy in Zambia and Zimbabwe - a study protocol
Cited by: 5
Author(s): Paul Kelly, Lauren N. Bell, Beatrice Amadi, Mutsa Bwakura‐Dangarembizi, Kelley VanBuskirk, Kanta Chandwe, Miyoba Chipunza, Deophine Ngosa, Nivea Chulu, Susan Hill, Simon Murch, Raymond J. Playford, Andrew J. Prendergast
Software Mentions: 1
Published: almost 7 years ago

10.3390/nu13093198

Milk Exosomes Transfer Oligosaccharides into Macrophages to Modulate Immunity and Attenuate Adherent-Invasive E. coli (AIEC) Infection
Cited by: 15
Author(s): Yingying He, Zhicheng He, Serena Leone, Shubai Liu
Software Mentions: 1
Published: about 5 years ago

10.29252/NIRP.BCN.9.2.107

Stress and Perception of Emotional Stimuli: Long-term Stress Rewiring the Brain
Cited by: 14
Author(s): Reza Khosrowabadi
Software Mentions: 1
Published: over 8 years ago

10.1186/1744-9081-4-8

MEG event-related desynchronization and synchronization deficits during basic somatosensory processing in individuals with ADHD
Cited by: 55
Author(s): Colleen Dockstader, William Gaetz, Douglas Cheyne, Frank Wang, F. Xavier Castellanos, Rosemary Tannock
Software Mentions: 1
Published: over 18 years ago

10.1186/1744-9081-10-32

Multilevel analysis of facial expressions of emotion and script: self-report (arousal and valence) and psychophysiological correlates
Cited by: 17
Author(s): Michela Balconi, Maria Elide Vanutelli, Roberta Finocchiaro
Software Mentions: 1
Published: almost 13 years ago

10.3758/s13428-014-0509-4

Affective norms for 1,586 polish words (ANPW): Duality-of-mind approach
Cited by: 73
Author(s): Kamil K. Imbir
Software Mentions: 1
Published: about 12 years ago

10.3390/bs10050092

Eye Movements in Response to Pain-Related Feelings in the Presence of Low and High Cognitive Loads
Cited by: 1
Author(s): Ramtin Zargari Marandi, Camilla Ann Fjelsted, Iris Hrustanovic, Rikke Olesen, Parisa Gazerani
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-0381-5-4

Weighted multiple testing procedures for genomic studies
Cited by: 13
Author(s): Jiang Gui, Tor D. Tosteson, Mark E. Borsuk
Software Mentions: 1
Published: over 14 years ago

10.1093/bioinformatics/btt113

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
Cited by: 208
Author(s): Jon C. Ison, Matúš Kalaš, Inge Jonassen, Dan Bolser, Mahmut Uludağ, Hamish McWilliam, James Malone, Rodrigo López, Steve Pettifer, Peter Rice
Software Mentions: 1
Published: over 13 years ago

10.1093/bioinformatics/bty483

TranscriptClean: variant-aware correction of indels, mismatches and splice junctions in long-read transcripts
Cited by: 44
Author(s): Dana Wyman, A Mortazavi
Software Mentions: 1
Published: over 8 years ago

10.1093/bioinformatics/btt403

nhmmer: DNA homology search with profile HMMs
Cited by: 604
Author(s): Travis J. Wheeler, Sean R. Eddy
Software Mentions: 1
Published: over 13 years ago

10.1093/bioinformatics/btu314

SAMBLASTER: fast duplicate marking and structural variant read extraction
Cited by: 619
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: over 12 years ago

10.1093/bioinformatics/btv098

Sambamba: fast processing of NGS alignment formats
Cited by: 1,278
Author(s): А. В. Тарасов, Albert J. Vilella, Edwin Cuppen, Isaäc J. Nijman, Pjotr Prins
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/bty408

PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data
Cited by: 25
Author(s): Cheng Chang, Kaikun Xu, Chaoping Guo, Wang Jin-xia, Qi Yan, Jian Zhang, Fuchu He, Yunping Zhu
Software Mentions: 1
Published: over 8 years ago

10.1093/bioinformatics/btu390

The Scramble conversion tool
Cited by: 39
Author(s): James K. Bonfield
Software Mentions: 1
Published: over 12 years ago

10.1093/bioinformatics/btt601

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
Cited by: 82
Author(s): André Schumacher, Luca Pireddu, Matti Niemenmaa, Aleksi Kallio, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko
Software Mentions: 1
Published: almost 13 years ago

10.1093/bioinformatics/bts456

YAHA: fast and flexible long-read alignment with optimal breakpoint detection
Cited by: 63
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: about 14 years ago

10.1007/s00422-013-0574-2

Revealing instances of coordination among multiple cortical areas
Cited by: 10
Author(s): Moshe Abeles
Software Mentions: 1
Published: almost 13 years ago

10.1186/1745-6150-6-50

Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome
Cited by: 46
Author(s): Manfredo J. Seufferheld, Kyung Mo Kim, James B. Whitfield, Alejandro A. Valerio, Gustavo Caetano‐Anollés
Software Mentions: 1
Published: almost 16 years ago

10.1186/s40659-019-0216-9

Intestinal transcriptional profiling reveals fava bean-induced immune response in DBA/1 mice
Cited by: 1
Author(s): Guankui Du, Mochao Xiao, Quangang Zhu, Chen Zhou, Ao Wang, Wei Cai
Software Mentions: 1
Published: over 7 years ago

10.3390/biology1010005

Biomarker Gene Signature Discovery Integrating Network Knowledge
Cited by: 27
Author(s): Yupeng Cun, Holger Fröhlich
Software Mentions: 1
Published: over 14 years ago

10.3390/biology10070578

Influence of Varying Dietary ω6 to ω3 Fatty Acid Ratios on the Hepatic Transcriptome, and Association with Phenotypic Traits (Growth, Somatic Indices, and Tissue Lipid Composition), in Atlantic Salmon (Salmo salar)
Cited by: 2
Author(s): Tomer Katan, Xi Xue, Albert Caballero‐Solares, Richard G. Taylor, Christopher C. Parrish, Matthew L. Rise
Software Mentions: 1
Published: over 5 years ago

10.3390/biology6010014

MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data
Cited by: 2
Author(s): Christopher Noune, Caroline Hauxwell
Software Mentions: 1
Published: over 9 years ago

10.1186/s40364-021-00303-x

LncRNAs serve as novel biomarkers for diagnosis and prognosis of childhood ALL
Cited by: 9
Author(s): Xuanmei Huang, Libin Huang, Qing Xie, Ling Zhang, Shaohui Huang, Mingye Hong, Jiangbin Li, Zunnan Huang, Hua Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12938-021-00930-3

Extended classifier system with continuous real-coded variables for feature extraction of instantaneous pulse-rate variability and respiration of individuals with gaming disorder
Cited by: 1
Author(s): Hung Ming, Tzu Chien Hsiao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12938-021-00882-8

Event-related EEG oscillatory responses elicited by dynamic facial expression
Cited by: 1
Author(s): Tuba Aktürk, Tom A. de Graaf, Yasemin Abra, Sevilay Şahoğlu-Göktaş, Dilek Özkan, Aysun Kula, Bahar Güntekin
Software Mentions: 1
Published: over 5 years ago

10.1186/1475-925X-13-81

The influence of emotion on keyboard typing: an experimental study using visual stimuli
Cited by: 12
Author(s): Po-Ming Lee, Wei-Hsuan Tsui, Tzu‐Chien Hsiao
Software Mentions: 1
Published: over 12 years ago

10.1186/1475-925X-3-34

Review and standardization of cell phone exposure calculations using the SAM phantom and anatomically correct head models
Cited by: 24
Author(s): Brian B. Beard, Wolfgang Kainz
Software Mentions: 1
Published: almost 22 years ago

10.1186/s12938-021-00848-w

Attention-based multi-scale features fusion for unobtrusive atrial fibrillation detection using ballistocardiogram signal
Cited by: 7
Author(s): Fangfang Jiang, Chuhang Hong, Tianqing Cheng, Haoqian Wang, Bowen Xu, Biyong Zhang
Software Mentions: 1
Published: over 5 years ago

10.2349/biij.3.1.e25

Using magnetoencephalography to investigate brain activity during high frequency deep brain stimulation in a cluster headache patient
Cited by: 18
Author(s): NJ Ray, Morten L. Kringelbach, Ned Jenkinson, Owen Slf., Paul Davies, S Wang, Nick de Pennington, PC Hansen, John Stein, TZ Aziz
Software Mentions: 1
Published: almost 20 years ago

10.1155/2015/492395

Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes
Cited by: 31
Author(s): Madeeha Aqil, Saurav Mallik, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Shahid Jameel
Software Mentions: 1
Published: almost 12 years ago

10.1155/2018/8475463

Siji Antiviral Mixture Protects against CA16 Induced Brain Injury through Inhibiting PERK/STAT3/NF-κB Pathway
Cited by: 1
Author(s): Huimin Xiao, Ruiyang Zhao, Yue He, Yang Liu, Qin He, Siwang Wang, Fei Chen
Software Mentions: 1
Published: about 8 years ago

10.1155/2020/8595473

Contributions of Gene Modules Regulated by Essential Noncoding RNA in Colon Adenocarcinoma Progression
Cited by: 0
Author(s): Chunhua Li, Xihe Yu, Jianping Lu, Lei Zheng, Dahua Xu, Zelong Xu, Liqiang Wang, Ying Cui, Yeshuang Li, Hong Wang, Jiankai Xu, Kongning Li
Software Mentions: 1
Published: over 6 years ago

10.1155/2013/317926

Profiling of Hepatocellular Carcinoma Cell Cycle Regulating Genes Targeted by Calycosin
Cited by: 14
Author(s): Dongqing Zhang, Shufang Wang, Li Zhu, Yao Tian, Haibao Wang, Yuan Zhuang, Yu Li, Deqing Wang
Software Mentions: 1
Published: almost 14 years ago

10.1155/2015/625192

Age-Specific Gene Expression Profiles of Rhesus Monkey Ovaries Detected by Microarray Analysis
Cited by: 8
Author(s): Hengxi Wei, Xiangjie Liu, Jihong Yuan, Li Li, Dongdong Zhang, Xiaolong Guo, Lin Liu, Shouquan Zhang
Software Mentions: 1
Published: almost 12 years ago

10.1155/2015/949624

Transcriptional Changes Associated with Long-Term Left Ventricle Volume Overload in Rats: Impact on Enzymes Related to Myocardial Energy Metabolism
Cited by: 9
Author(s): Élise Roussel, Marie‐Claude Drolet, Élisabeth Walsh-Wilkinson, Wahiba Dhahri, Dominic Lachance, Suzanne Gascon, Otman Sarrhini, Jacques Rousseau, Roger Lecomte, Jacques Couët, Marie Arsenault
Software Mentions: 1
Published: almost 12 years ago

10.1155/2019/3843295

Breast Tumor Detection and Classification Using Intravoxel Incoherent Motion Hyperspectral Imaging Techniques
Cited by: 6
Author(s): Si-Wa Chan, Yung-Chieh Chang, Po-Chiun Huang, Yen-Chieh Ouyang, Yu-Tzu Chang, Ruey-Feng Chang, Jyh‐Wen Chai, Clayton Chi‐Chang Chen, Hsian‐Min Chen, Chein‐I Chang, Chia-Chieh Lin
Software Mentions: 1
Published: about 7 years ago

10.1155/2014/543673

Complex Network-Driven View of Genomic Mechanisms Underlying Parkinson’s Disease: Analyses in Dorsal Motor Vagal Nucleus, Locus Coeruleus, and Substantia Nigra
Cited by: 22
Author(s): Beatriz Raposo Corradini, Priscila Iamashita, Edilaine Tampellini, José Marcelo Farfel, Lea T. Grinberg, Carlos Alberto Moreira-Filho
Software Mentions: 1
Published: almost 13 years ago

10.1155/2018/5895628

Global, Survival, and Apoptotic Transcriptome during Mouse and Human Early Embryonic Development
Cited by: 9
Author(s): D. Haouzi, I. Boumela, Karim Chébli, S. Hamamah
Software Mentions: 1
Published: almost 8 years ago

10.1155/2015/561819

Targeted Next-Generation Sequencing Reveals Hot Spots and Doubly Heterozygous Mutations in Chinese Patients with Familial Cardiomyopathy
Cited by: 9
Author(s): Yue Zhao, Yue Feng, Yunmei Zhang, Xiaoqing Ding, Yuzhu Song, A-Mei Zhang, Li Liu, Hong Zhang, Jindong Ding, Xueshan Xia
Software Mentions: 1
Published: almost 12 years ago

10.1155/2017/6423021

Bioinformatics Genes and Pathway Analysis for Chronic Neuropathic Pain after Spinal Cord Injury
Cited by: 36
Author(s): Guan Zhang, Ping Yang
Software Mentions: 1
Published: almost 10 years ago

10.1155/2016/6125204

Structural and Histochemical Alterations in the Aortic Valves of Elderly Patients: A Comparative Study of Aortic Stenosis, Aortic Regurgitation, and Normal Valves
Cited by: 19
Author(s): Katsutoshi Miura, Hideki Katoh
Software Mentions: 1
Published: almost 11 years ago

10.1155/2014/171487

Alteration of Interictal Brain Activity in Patients with Temporal Lobe Epilepsy in the Left Dominant Hemisphere: A Resting-State MEG Study
Cited by: 4
Author(s): Haitao Zhu, Jing Zhu, Tiezhu Zhao, Yong Wu, Hongyi Liu, Ting Wu, Lu Yang, Yuanjie Zou, Rui Zhang, Gang Zheng
Software Mentions: 1
Published: almost 13 years ago

10.1155/2014/527029

Survey of Network-Based Approaches to Research of Cardiovascular Diseases
Cited by: 8
Author(s): Anida Sarajlić, Nataša Pržulj
Software Mentions: 1
Published: almost 13 years ago

10.1155/2014/850802

ECR-MAPK Regulation in Liver Early Development
Cited by: 4
Author(s): Xiu-Ju Zhao, Hexian Zhuo
Software Mentions: 1
Published: almost 13 years ago

10.1155/2013/354582

Comparative Gene Expression Profiling in Human Cumulus Cells according to Ovarian Gonadotropin Treatments
Cited by: 33
Author(s): Saïd Assou, D. Haouzi, H. Déchaud, Anna Gala, A. Ferrières, S. Hamamah
Software Mentions: 1
Published: almost 14 years ago

10.1155/2014/651751

Microarray-Based RNA Profiling of Breast Cancer: Batch Effect Removal Improves Cross-Platform Consistency
Cited by: 19
Author(s): Martin Jakob Larsen, Mads Thomassen, Qihua Tan, Kristina Pilekær Sørensen, Torben A. Kruse
Software Mentions: 1
Published: almost 13 years ago

10.1155/2014/951937

Endometrial Receptivity Profile in Patients with Premature Progesterone Elevation on the Day of hCG Administration
Cited by: 46
Author(s): D. Haouzi, Laurence Bissonnette, Anna Gala, Saïd Assou, Frida Entezami, Hélène Perrochia, H. Déchaud, Jean‐Noël Hugues, S. Hamamah
Software Mentions: 1
Published: almost 13 years ago

10.1155/2013/317912

Development of Pineapple Microsatellite Markers and Germplasm Genetic Diversity Analysis
Cited by: 13
Author(s): Shuo Feng, Tong HeLin, Chun‐Xiang You, Jingyi Wang, Yeyuan Chen, Guangming Sun, Jun He, Yan Wu
Software Mentions: 1
Published: almost 14 years ago

10.1155/2014/536591

Computational Analysis of mRNA Expression Profiles Identifies theITGFamily andPIK3R3as Crucial Genes for Regulating Triple Negative Breast Cancer Cell Migration
Cited by: 13
Author(s): Sukhontip Klahan, Mei-Shin Wu, Edward Hsi, Chi‐Cheng Huang, Ming‐Feng Hou, Wei Chiao Chang
Software Mentions: 1
Published: almost 13 years ago

10.1155/2016/8208904

Expression of Migration-Related Genes in Human Colorectal Cancer and Activity of a Disintegrin and Metalloproteinase 17
Cited by: 19
Author(s): Katarzyna Walkiewicz, Paweł Kozieł, Martyna Bednarczyk, Adam Błażelonis, Urszula Mazurek, Małgorzata Muc-Wierzgoń
Software Mentions: 1
Published: almost 11 years ago

10.1155/2014/138410

msiDBN: A Method of Identifying Critical Proteins in Dynamic PPI Networks
Cited by: 4
Author(s): Yuan Zhang, Nan Du, Kang Li, Jinchao Feng, Kebin Jia, Aidong Zhang
Software Mentions: 1
Published: almost 13 years ago

10.7603/s40681-014-0010-5

Coronary artery aneurysms occurrence risk analysis between Kawasaki disease and LRP1B gene in Taiwanese children
Cited by: 8
Author(s): Ying Lin, Xiang Liu, Jen‐Ping Chang, Wen Kuei Chien, Jin Hua Chen, Hsinyi Tsang, Chien Hui Hung, Ting Hsu Lin, Shaohui Huang, Chien-Chang Liao, Cheng Wen Lin, Tsung Jung Ho, Fuu Jen Tsai
Software Mentions: 1
Published: over 12 years ago

10.3390/biomedicines9091258

Master Regulators of Epithelial-Mesenchymal Transition and WNT Signaling Pathways in Juvenile Nasopharyngeal Angiofibromas
Cited by: 2
Author(s): Naiade Calanca, Sara Martoreli Silveira Binato, Sabrina Daniela da Silva, Helena Brentani, Luiz Ubirajara Sennes, Clóvis Antônio Lopes Pinto, Maria Aparecida Custódio Domingues, Carlos Eduardo Fonseca-Alves, Cláudia Aparecida Rainho, Sílvia Regina Rogatto
Software Mentions: 1
Published: about 5 years ago

10.3390/biom6040042

CoverageAnalyzer (CAn): A Tool for Inspection of Modification Signatures in RNA Sequencing Profiles
Cited by: 16
Author(s): Ralf Hauenschild, Stephan Werner, Lyudmil Tserovski, Andreas Hildebrandt, Yuri Motorin, Mark Helm
Software Mentions: 1
Published: almost 10 years ago

10.3390/biom7010003

DNA Methylation Targeting: The DNMT/HMT Crosstalk Challenge
Cited by: 93
Author(s): Omar Castillo-Aguilera, Patrick Depreux, Ludovic Halby, Paola B. Arimondo, Laurence Goossens
Software Mentions: 1
Published: almost 10 years ago

10.1042/BSR20181016

The effect of HMGB1 on the clinicopathological and prognostic features of cervical cancer
Cited by: 12
Author(s): Li Pan, Meng-Fei Xu, Hongwei Cai, Niresh Thapa, Cancan He, Zhen Song
Software Mentions: 1
Published: over 7 years ago

10.3390/bios10110162

Carbon-Based Quantum Dots for Electrochemical Detection of Monoamine Neurotransmitters—Review
Cited by: 15
Author(s): Saheed E. Elugoke, Abolanle S. Adekunle, Omolola E. Fayemi, Bhekie B. Mamba, El‐Sayed M. Sherif, Eno E. Ebenso
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13068-015-0415-8

SorGSD: a sorghum genome SNP database
Cited by: 41
Author(s): Hong Luo, Wenming Zhao, Yanqing Wang, Yan Xia, Xiaoyuan Wu, Limin Zhang, Bixia Tang, Junwei Zhu, Fang Lü, Zhenglin Du, Wubishet A. Bekele, Shuaishuai Tai, David R. Jordan, Ian D. Godwin, Rod J. Snowdon, Emma Mace, Hai‐Chun Jing, Jianxun Luo
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13068-015-0260-9

Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum
Cited by: 30
Author(s): Keerthi P. Venkataramanan, Lie Min, Shuyu Hou, Shawn W. Jones, Matthew T. Ralston, Kelvin H. Lee, Eleftherios T. Papoutsakis
Software Mentions: 1
Published: over 11 years ago

10.1186/s13068-019-1554-0

Metabolic engineering of Bacillus amyloliquefaciens for enhanced production of S-adenosylmethionine by coupling of an engineered S-adenosylmethionine pathway and the tricarboxylic acid cycle
Cited by: 15
Author(s): Liying Ruan, Lü Li, Dian Zou, Cong Jiang, Zhiyou Wen, Shouwen Chen, Yu Deng, Xuetuan Wei
Software Mentions: 1
Published: about 7 years ago

10.1186/1754-6834-7-31

Transcriptional comparison of the filamentous fungus Neurospora crassagrowing on three major monosaccharides D-glucose, D-xylose and L-arabinose
Cited by: 53
Author(s): Jingen Li, Liangcai Lin, Yong Li, Chaoguang Tian, Yanhe Ma
Software Mentions: 1
Published: over 12 years ago

10.1038/boneres.2017.30

New insights into the vitamin D requirements during pregnancy
Cited by: 84
Author(s): Bruce W. Hollis, Carol L. Wagner
Software Mentions: 1
Published: about 9 years ago

10.1038/s41416-019-0725-x

Anti-VEGF therapy resistance in ovarian cancer is caused by GM-CSF-induced myeloid-derived suppressor cell recruitment
Cited by: 57
Author(s): Naoki Horikawa, Kaoru Abiko, Noriomi Matsumura, Tsukasa Baba, Junzo Hamanishi, Ken Yamaguchi, Ryusuke Murakami, Mana Taki, Masao Ukita, Yuko Hosoe, Masafumi Koshiyama, Ikuo Konishi, Masaki Mandai
Software Mentions: 1
Published: over 6 years ago

10.1038/s41416-021-01377-y

The circulating soluble form of the CD40 costimulatory immune checkpoint receptor and liver metastasis risk in rectal cancer
Cited by: 7
Author(s): Sebastian Meltzer, Annette Torgunrud, Hanna Abrahamsson, Arne M. Solbakken, Kjersti Flatmark, Svein Dueland, Kine Mari Bakke, Paula A. Bousquet, Anne Negård, Christin Johansen, Lars Gustav Lyckander, Finn Ole Larsen, Jesper Sølver Schou, Kathrine Røe Redalen, Anne Hansen Ree
Software Mentions: 1
Published: over 5 years ago

10.1038/bjc.2017.102

Decreased levels of baseline and drug-induced tubulin polymerisation are hallmarks of resistance to taxanes in ovarian cancer cells and are associated with epithelial-to-mesenchymal transition
Cited by: 36
Author(s): George E. Durán, Yan C. Wang, François Moisan, E. Brian Francisco, Branimir I. Šikić
Software Mentions: 1
Published: over 9 years ago

10.1002/brb3.686

Resting state and personality component (BIS/BAS) predict the brain activity (EEG and fNIRS measure) in response to emotional cues
Cited by: 24
Author(s): Michela Balconi, Maria Elide Vanutelli, Elisabetta Grippa
Software Mentions: 1
Published: over 9 years ago

10.1007/s40708-017-0069-3

Emotion recognition based on EEG features in movie clips with channel selection
Cited by: 89
Author(s): Mehmet Siraç Özerdem, Hasan Polat
Software Mentions: 1
Published: about 9 years ago

10.3390/brainsci11010035

Oscillatory EEG Signatures of Affective Processes during Interaction with Adaptive Computer Systems
Cited by: 3
Author(s): Mathias Vukelić, Katharina Lingelbach, Kathrin Pollmann, Matthias Peißner
Software Mentions: 1
Published: almost 6 years ago

10.3390/brainsci11020128

The Influence of Video Format on Engagement and Performance in Online Learning
Cited by: 18
Author(s): Sergej Lackmann, Pierre-Majorique Léger, Patrick Charland, Caroline Aubé, Jean Talbot
Software Mentions: 1
Published: over 5 years ago

10.3390/brainsci8080157

Magnetoencephalography: Clinical and Research Practices
Cited by: 9
Author(s): Jennifer R. Stapleton-Kotloski, Robert J. Kotloski, Gautam Popli, Dwayne W. Godwin
Software Mentions: 1
Published: about 8 years ago

10.3390/brainsci6010001

REM-Enriched Naps Are Associated with Memory Consolidation for Sad Stories and Enhance Mood-Related Reactivity
Cited by: 35
Author(s): Médhi Gilson, Gaétane Deliens, Rachel Leproult, Alice Bodart, Antoine Nonclercq, Rudy Ercek, Philippe Peigneux
Software Mentions: 1
Published: almost 11 years ago

10.3390/brainsci11020274

A Muscular and Cerebral Physiological Indices Assessment for Stress Measuring during Virtual Wheelchair Guidance
Cited by: 2
Author(s): Mohamed Moncef Ben Khelifa, Hachem A. Lamti, Vincent Hugel
Software Mentions: 1
Published: over 5 years ago

10.1590/1414-431X20209021

Expression of CHPF modulates cell proliferation and invasion in lung cancer
Cited by: 6
Author(s): Chengsong Cao, Yong Liu, Qun Wang, Jing Zhao, Ming Shi, Jian Zheng
Software Mentions: 1
Published: almost 7 years ago

10.1186/bcr1732

Molecular response to aromatase inhibitor treatment in primary breast cancer
Cited by: 109
Author(s): Alan Mackay, Ander Urruticoechea, JM Dixon, Tim Dexter, Kerry Fenwick, Alan Ashworth, Suzanne Drury, Alexey Larionov, Oliver Young, Sharon White, William R. Miller, Dean B. Evans, Mitch Dowsett
Software Mentions: 1
Published: over 19 years ago

10.1186/bcr2590

Molecular subtypes of breast cancer are associated with characteristic DNA methylation patterns
Cited by: 251
Author(s): Karolina Holm, Cecilia Hegardt, Johan Staaf, Johan Vallon‐Christersson, Göran Jönsson, Håkan Olsson, Åke Borg, Markus Ringnér
Software Mentions: 1
Published: over 16 years ago

10.1186/s13058-014-0415-9

A joint analysis of metabolomics and genetics of breast cancer
Cited by: 150
Author(s): Xiaohu Tang, Chao-Chieh Lin, Ivan Spasojević, Edwin S. Iversen, Jen-Tsan Chi, Jeffrey R. Marks
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pcbi.1000274

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations
Cited by: 35
Author(s): Charles J. Vaske, Carrie D. House, Truong Luu, Bryan Frank, Chen Hsiang Yeang, Norman H. Lee, Joshua M. Stuart
Software Mentions: 1
Published: over 17 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566