cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1752-0509-5-52

A computational framework for gene regulatory network inference that combines multiple methods and datasets
Cited by: 33
Author(s): R. Gupta, Anna Stincone, Philipp Antczak, Sarah M. Durant, Roy Bicknell, Andréas Bikfalvi, Francesco Falciani
Software Mentions: 1
Published: over 15 years ago

10.1186/1752-0509-3-20

Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation
Cited by: 32
Author(s): Albert C. Huang, Limei Hu, Stuart Kauffman, Wei Zhang, Ilya Shmulevich
Software Mentions: 1
Published: over 17 years ago

10.1186/1752-0509-6-112

Detecting microRNAs of high influence on protein functional interaction networks: a prostate cancer case study
Cited by: 13
Author(s): Mohammed Alshalalfa, Gary D. Bader, Anna Goldenberg, Quaid Morris, Reda Alhajj
Software Mentions: 1
Published: over 14 years ago

10.1186/s12918-015-0215-6

Mathematical analysis of the regulation of competing methyltransferases
Cited by: 21
Author(s): Michael C. Reed, Mary V. Gamble, Megan N. Hall, H. Frederik Nijhout
Software Mentions: 1
Published: almost 11 years ago

10.1186/1752-0509-3-11

A Drosophila systems model of pentylenetetrazole induced locomotor plasticity responsive to antiepileptic drugs
Cited by: 26
Author(s): Farhan Mohammad, Priyanka Singh, Abhay Sharma
Software Mentions: 1
Published: over 17 years ago

10.1186/1752-0509-7-S4-S1

A novel approach to minimize false discovery rate in genome-wide data analysis
Cited by: 2
Author(s): Yuanzhe Bei, Pengyu Hong
Software Mentions: 1
Published: over 13 years ago

10.1186/1752-0509-6-68

Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis
Cited by: 116
Author(s): Jihong Fu, Wentao Tang, Peng Du, Guanghui Wang, Wei Chen, Jingming Li, Yunxiang Zhu, Jun Gao, Long Cui
Software Mentions: 1
Published: about 14 years ago

10.1186/1752-0509-6-152

Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach
Cited by: 32
Author(s): Shengjun Fan, Qiang Geng, Zhenyu Pan, Xin Li, Lu Tie, Yan Pan, Xuejun Li
Software Mentions: 1
Published: over 13 years ago

10.1186/1752-0509-4-177

Individual vs. combinatorial effect of elevated CO2 conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses
Cited by: 52
Author(s): Harin Kanani, Bhaskar Dutta, Maria I. Klapa
Software Mentions: 1
Published: over 15 years ago

10.1186/1752-0509-5-158

Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network
Cited by: 22
Author(s): Liu Hui, Jianzhong Su, Junhua Li, Hongbo Liu, Jie Lv, Boyan Li, Hong Qiao, Yan Zhang
Software Mentions: 1
Published: almost 15 years ago

10.1186/1752-0509-7-120

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress
Cited by: 65
Author(s): Qinghua Wang, Keerthi P. Venkataramanan, Hongzhan Huang, Eleftherios T. Papoutsakis, Cathy H. Wu
Software Mentions: 1
Published: almost 13 years ago

10.1186/1752-0509-4-51

Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma
Cited by: 229
Author(s): Huiqing Liu, A. Rose Brannon, Anupama Reddy, Gabriela Alexe, Michael Seiler, Alexandra Arreola, Jay Oza, Ming Yao, David Juan, Louis S. Liou, Shridar Ganesan, Arnold J. Levine, W. Kimryn Rathmell, Gyan Bhanot
Software Mentions: 1
Published: over 16 years ago

10.1186/1752-0509-5-99

Integrative network analysis reveals active microRNAs and their functions in gastric cancer
Cited by: 79
Author(s): Chien Wei Tseng, Lin Chen, Chiung Nien Chen, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: about 15 years ago

10.1186/1752-0509-7-S2-S10

HSA: A Heuristic Splice Alignment Tool
Cited by: 7
Author(s): Jingde Bu, Xuebin Chi, Zhong Jin
Software Mentions: 1
Published: almost 13 years ago

10.1186/1752-0509-8-S2-S8

A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease
Cited by: 23
Author(s): Jörg Menche, Amitabh Sharma, Michael H. Cho, Ruth Mayer, Stephen I. Rennard, Bartolomé R. Celli, Bruce E. Miller, Nick Locantore, Ruth Tal‐Singer, Soumitra Ghosh, Chris Larminie, Glyn Bradley, John Riley, Àlvar Agustí, Edwin K. Silverman, Albert‐László Barabási
Software Mentions: 1
Published: over 12 years ago

10.1186/s12917-016-0904-4

A frameshift mutation in MOCOS is associated with familial renal syndrome (xanthinuria) in Tyrolean Grey cattle
Cited by: 12
Author(s): Leonardo Murgiano, Vidhya Jagannathan, Christian Piffer, Inmaculada Diez-Prieto, Marilena Bolcato, Arcangelo Gentile, Cord Drögemüller
Software Mentions: 1
Published: over 9 years ago

10.1186/1746-6148-6-49

Ovine serum biomarkers of early and late phase scrapie
Cited by: 14
Author(s): Isabelle Batxelli-Molina, Nicolas Salvetat, Olivier Andréoletti, Luc Guerrier, Guillaume Vicat, Franck Molina, Chantal Mourton-Gilles
Software Mentions: 1
Published: over 16 years ago

10.1186/1746-6148-8-205

Transcriptomic markers meet the real world: finding diagnostic signatures of corticosteroid treatment in commercial beef samples
Cited by: 10
Author(s): Sara Pegolo, Guglielmo Gallina, Clara Montesissa, Francesca Capolongo, Serena Ferraresso, Caterina Pellizzari, Lisa Poppi, Massimo Castagnaro, Luca Bargelloni
Software Mentions: 1
Published: almost 14 years ago

10.1186/1746-6148-8-65

Evaluating observer agreement of scoring systems for foot integrity and footrot lesions in sheep
Cited by: 23
Author(s): Alessandro Foddai, Laura Green, Sarah Mason, Jasmeet Kaler
Software Mentions: 1
Published: about 14 years ago

10.1136/bmjgh-2020-002613

Long-term outcomes for children with disability and severe acute malnutrition in Malawi
Cited by: 8
Author(s): Natasha Lelijveld, Nora Groce, Seema Patel, Theresa Nnensa, Emmanuel Chimwezi, Melissa Gladstone, Macpherson Mallewa, Jonathan C. K. Wells, Andrew Seal, Marko Kerac
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms7110499

Elucidating Escherichia Coli O157:H7 Colonization and Internalization in Cucumbers Using an Inverted Fluorescence Microscope and Hyperspectral Microscopy
Cited by: 6
Author(s): Yeting Sun, Dan Wang, Yue Ma, Hongyang Guan, Hao Liang, Xiaoyan Zhao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41378-020-00219-w

Using intracellular plasmonics to characterize nanomorphology in human cells
Cited by: 10
Author(s): Ahmad Sohrabi Kashani, Alisa Piekny, Muthukumaran Packirisamy
Software Mentions: 1
Published: over 5 years ago

10.1080/23802359.2019.1667279

The complete mitochondrial genome of Ceutorhynchus obstrictus (Marsham, 1802) (Coleoptera: Curculionidae)
Cited by: 4
Author(s): Hyobin Lee, Jong‐Hyun Park, Jieun Lee, Ki–Jeong Hong, Jongsun Park, Wonhoon Lee
Software Mentions: 1
Published: about 7 years ago

10.1080/23802359.2020.1866450

Inheritance of Solanum chloroplast genomic DNA in interspecific hybrids
Cited by: 4
Author(s): Dandan Li, Guiyun Gan, Weiliu Li, Wenjia Li, Yaqin Jiang, Xuyu Liang, Yu Ning, Riyuan Chen, Yikui Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41379-019-0279-8

Whole exome sequencing reveals mutations in FAT1 tumor suppressor gene clinically impacting on peripheral T-cell lymphoma not otherwise specified
Cited by: 37
Author(s): Maria Antonella Laginestra, Luciano Cascione, Giovanna Motta, Fabio Fuligni, Claudio Agostinelli, Mosé Rossi, Maria Rosaria Sapienza, Simona Righi, Alessandro Broccoli, Valentina Indio, Federica Melle, Valentina Tabanelli, Angelica Calleri, Domenico Novero, Fabio Facchetti, Giorgio Inghirami, Elena Sabattini, Francesco Bertoni, Stefano Pileri
Software Mentions: 1
Published: over 6 years ago

10.1093/molbev/msw224

Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations inVibrio choleraeandVibrio fischeri
Cited by: 69
Author(s): Marcus M. Dillon, Way Sung, Robert Sebra, Michael Lynch, Vaughn S. Cooper
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13041-015-0133-y

Circulating miRNAs profiles in tourette syndrome: molecular data and clinical implications
Cited by: 26
Author(s): Renata Rizzo, Marco Ragusa, Cristina Barbagallo, M. Sammito, Mariangela Gulisano, Paola V. Calì, Claudio Pappalardo, Martina Barchitta, Mariagrazia Granata, Angelo Giuseppe Condorelli, Davide Barbagallo, Marina Scalia, Antonella Agodi, Cinzia Di Pietro, Michele Purrello
Software Mentions: 1
Published: about 11 years ago

10.1186/1476-4598-5-24

Cited by: 642
Author(s): Michael D. Mattie, Christopher C. Benz, Jessica Bowers, Kelly Sensinger, Linda Wong, Gary K. Scott, Vita Fedele, David G. Ginzinger, Robert C. Getts, Chris Haqq
Software Mentions: 1
Published: over 20 years ago

10.1186/1476-4598-7-92

Gene expression deregulation by KRAS G12D and G12V in a BRAF V600E context
Cited by: 33
Author(s): Massimiliano Monticone, Emanuela Biollo, Massimo Maffei, Alessandra Donadini, Francesco Romeo, Clelia Tiziana Storlazzi, Walter Giaretti, Patrizio Castagnola
Software Mentions: 1
Published: over 17 years ago

10.1186/1476-4598-13-19

Identification and validation of PROM1 and CRTC2 mutations in lung cancer patients
Cited by: 12
Author(s): Yao He, Yalun Li, Zhixin Qiu, Bin Zhou, Shanbin Shi, Kui Zhang, Yuan Luo, Qian Huang, Weimin Liu
Software Mentions: 1
Published: over 12 years ago

10.1186/1476-4598-12-70

ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours
Cited by: 11
Author(s): Annica Wilzén, Cecilia Krona, Baldur Sveinbjörnsson, Erik Kristiansson, Daniel Dalevi, Ingrid Øra, Katleen De Preter, Raymond L. Stallings, John M. Maris, Rogier Versteeg, Staffan Nilsson, Per Kogner, Frida Abel
Software Mentions: 1
Published: about 13 years ago

10.1186/1476-4598-8-69

MicroRNA expression profiling in Imatinib-resistant Chronic Myeloid Leukemia patients without clinically significant ABL1-mutations
Cited by: 102
Author(s): Edurne San José‐Eneriz, José Román‐Gómez, Antonio Jiménez-Velasco, Leire Gárate, Vanesa Martı́n, Lucía Cordeu, Amaia Vilas-Zornoza, Paula Rodríguez‐Otero, Marı́a José Calasanz, Felipe Prósper, Xabier Agirre
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12943-017-0726-4

Identification of non-invasive miRNAs biomarkers for prostate cancer by deep sequencing analysis of urinary exosomes
Cited by: 174
Author(s): Marta Rodríguez, Cristina Bajo-Santos, Nina Pettersen Hessvik, Susanne Lorenz, Bastian Fromm, Viktor Berge, Kirsten Sandvig, Aija Linē, Alicia Llorente
Software Mentions: 1
Published: almost 9 years ago

10.1186/1476-4598-12-110

Decreased fructose-1,6-bisphosphatase-2 expression promotes glycolysis and growth in gastric cancer cells
Cited by: 61
Author(s): He Li, Juan Wang, Hao Xu, Rui Xing, Yuanming Pan, Wenmei Li, Jiantao Cui, Hongbing Zhang, Youyong Lü
Software Mentions: 1
Published: almost 13 years ago

10.1186/1476-4598-4-15

Cited by: 62
Author(s): Christophe Rosty, M.-H. Aubriot, David Cappellen, J S Bourdin, Isabelle Cartier, Jean Paul Thiery, Xavier Sastre-Garau, François Radvanyi
Software Mentions: 1
Published: over 21 years ago

10.1186/1476-4598-7-22

In Silico analysis of Gastric carcinoma Serial Analysis of Gene Expression libraries reveals different profiles associated with ethnicity
Cited by: 20
Author(s): Francisco J. Ossandon, Cynthia Villarroel, Francisco Aguayo, Eudocia Santibáñez, Naohide Oue, Wataru Yasui, Alejandro Corvalán
Software Mentions: 1
Published: over 18 years ago

10.1186/1476-4598-4-34

Cited by: 12
Author(s): Giancarlo Ghiselli, Chang Gong Liu
Software Mentions: 1
Published: over 21 years ago

10.1186/s12943-017-0696-6

Oncogenic long noncoding RNA landscape in breast cancer
Cited by: 175
Author(s): Shouping Xu, Dejia Kong, Qianlin Chen, Yanyan Ping, Da Pang
Software Mentions: 1
Published: about 9 years ago

10.1186/1476-4598-4-1

Cited by: 144
Author(s): Rijin Xiao, Thomas M. Badger, Frank A. Simmen
Software Mentions: 1
Published: over 21 years ago

10.1186/1476-4598-4-26

Variation in gene expression patterns in effusions and primary tumors from serous ovarian cancer patients
Cited by: 26
Author(s): Marci E. Schaner, Ben Davidson, Martina L. Skrede, Reuven Reich, Viví Ann Flørenes, Björn Risberg, Aasmund Berner, Iris Goldberg, Vered Givant-Horwitz, Claes G. Tropé, Gunnar B. Kristensen, Jahn M. Nesland, Anne Lise Børresen-Dale
Software Mentions: 1
Published: about 21 years ago

10.1186/1476-4598-8-130

Differential expression of apoptotic genes PDIA3 and MAP3K5 distinguishes between low- and high-risk prostate cancer
Cited by: 67
Author(s): Nicole Chui Pressinotti, Helmut Klocker, Georg Schäfer, Van-Duc Luu, Markus Ruschhaupt, Ruprecht Kuner, Eberhard Steiner, Annemarie Poustka, Georg Bartsch, Holger Sültmann
Software Mentions: 1
Published: over 16 years ago

10.1186/1476-4598-13-86

MicroRNA-181a promotes tumor growth and liver metastasis in colorectal cancer by targeting the tumor suppressor WIF-1
Cited by: 123
Author(s): Dengbo Ji, Zhiguo Chen, Ming Li, Tiancheng Zhan, Yunfeng Yao, Zhiqian Zhang, Jianzhong Xi, Yan Li, Jin Gu
Software Mentions: 1
Published: over 12 years ago

10.1186/s12943-021-01367-x

Cancer-associated fibroblast-derived gene signatures determine prognosis in colon cancer patients
Cited by: 39
Author(s): Mercedes Herrera, Alberto Berral-González, Igor López-Cade, Cristina Galindo-Pumariño, Santiago Bueno-Fortes, Manuel Martín-Merino, Alfredo Carrato, Alberto Ocaña, Carolina de la Pinta, Ana López-Alfonso, Cristina Peña, Vanesa García-Barberán, Javier De Las Rivas
Software Mentions: 1
Published: over 5 years ago

10.1186/1476-4598-6-53

Molecular portrait of cisplatin induced response in human testis cancer cell lines based on gene expression profiles
Cited by: 58
Author(s): Nur Duale, Birgitte Lindeman, Mitsuko Komada, Ann‐Karin Olsen, Åshild Kristine Andreassen, Erik J. Søderlund, Gunnar Brunborg
Software Mentions: 1
Published: about 19 years ago

10.1186/1476-4598-5-13

In vitro and in vivo effects of the PPAR-alpha agonists fenofibrate and retinoic acid in endometrial cancer
Cited by: 86
Author(s): Samir Saidi, Cathrine Holland, D. Stephen Charnock-Jones, Stephen K. Smith
Software Mentions: 1
Published: over 20 years ago

10.1186/1476-4598-9-193

Gene expression profiling of mouse p53-deficient epidermal carcinoma defines molecular determinants of human cancer malignancy
Cited by: 22
Author(s): Ramón García‐Escudero, Ana Belén Martínez-Cruz, Mirentxu Santos, Corina Lorz, Carmen Segrelles, Guillermo Garaulet, Cristina Sáiz-Ladera, Clotilde Costa, Águeda Buitrago-Pérez, Marta Dueñas, Jesús M. Paramio
Software Mentions: 1
Published: over 16 years ago

10.1016/j.molcel.2018.05.022

Scc2 Is a Potent Activator of Cohesin’s ATPase that Promotes Loading by Binding Scc1 without Pds5
Cited by: 132
Author(s): Naomi J Petela, Thomas G. Gligoris, Jean Metson, Byung-Gil Lee, Menelaos Voulgaris, Bin Hu, Satoru Kikuchi, Christophe Chapard, Wentao Chen, Eeson Rajendra, Madhusudhan Srinivisan, Hongtao Yu, Jan Löwe, Kim Nasmyth
Software Mentions: 1
Published: about 8 years ago

10.1016/j.molcel.2019.05.023

Sister DNA Entrapment between Juxtaposed Smc Heads and Kleisin of the Cohesin Complex
Cited by: 57
Author(s): Christophe Chapard, Robert C. Jones, Till van Oepen, Johanna C. Scheinost, K Nasmyth
Software Mentions: 1
Published: about 7 years ago

10.1186/s40348-018-0086-1

Gene correction of HBB mutations in CD34+ hematopoietic stem cells using Cas9 mRNA and ssODN donors
Cited by: 44
Author(s): Justin S. Antony, Ngadhnjim Latifi, Akm Ashiqul Haque, Andrés Lamsfus‐Calle, Alberto Daniel‐Moreno, Sebastian Graeter, Praveen Baskaran, Petra Weinmann, Markus Mezger, Rupert Handgretinger, Michael Kormann
Software Mentions: 1
Published: almost 8 years ago

10.1074/mcp.RA120.002119

Identification of Novel Serological Autoantibodies in Takayasu Arteritis Patients Using HuProt Arrays
Cited by: 9
Author(s): Xiaozhong Wen, Guang Song, Chaofan Hu, Jianbo Pan, Ziyan Wu, Liubing Li, Chenxi Liu, Xinping Tian, Fengchun Zhang, Jiang Qian, Heng Zhu, Yongzhe Li
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules16108848

Transcriptional and Functional Analysis Shows Sodium Houttuyfonate-Mediated Inhibition of Autolysis in Staphylococcus aureus
Cited by: 28
Author(s): Guoxing Liu, Hua Xiang, Xudong Tang, Kaiyu Zhang, Xiuping Wu, Xuelin Wang, Na Guo, Hailan Feng, Guangming Wang, Lihui Liu, Qiyun Shi, Fangzhong Shen, Xing Ming, Peng Yuan, Mingyuan Liu, Yu Lu
Software Mentions: 1
Published: almost 15 years ago

10.3390/molecules26020375

Identification of DNA Methyltransferase-1 Inhibitor for Breast Cancer Therapy through Computational Fragment-Based Drug Design
Cited by: 5
Author(s): Ahmad Husein Alkaff, Mutiara Saragih, Shabrina Noor Imana, Mochammad Arfin Fardiansyah Nasution, Usman Sumo Friend Tambunan
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules25092133

Bar Adsorptive Microextraction Coated with Carbon-Based Phase Mixtures for Performance-Enhancement to Monitor Selected Benzotriazoles, Benzothiazoles, and Benzenesulfonamides in Environmental Water Matrices
Cited by: 8
Author(s): Samir M. Ahmad, Bruno Boto Calado, Maria Liz Cunha de Oliveira, Nuno R. Neng, J.M.F. Nogueira
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules26092482

Betulinic Acid Affects the Energy-Related Proteomic Profiling in Pancreatic Ductal Adenocarcinoma Cells
Cited by: 5
Author(s): Ching-Feng Chiu, Han-Yu Chang, Chun Yine Huang, Chen Zou Mau, Tzu Ting Kuo, Hsiu Chuan Lee, Shih Yi Huang
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules22101599

Integrative Pathway Analysis of Genes and Metabolites Reveals Metabolism Abnormal Subpathway Regions and Modules in Esophageal Squamous Cell Carcinoma
Cited by: 10
Author(s): Chunquan Li, Qiuyu Wang, Jing Ma, Shengshu Shi, Xin Chen, Haixiu Yang, Junwei Han
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules26134087

The Diversity of the Mitochondrial Outer Membrane Protein Import Channels: Emerging Targets for Modulation
Cited by: 4
Author(s): Monika Mazur, Hanna Kmita, Małgorzata Wojtkowska
Software Mentions: 1
Published: about 5 years ago

10.1002/mgg3.20

Twin mitochondrial sequence analysis
Cited by: 11
Author(s): Yosr Bouhlal, Selena R. Martinez, Henry Gong, Kevin Dumas, Joseph T.C. Shieh
Software Mentions: 1
Published: about 13 years ago

10.1002/mgg3.320

Analysis of sequence data to identify potential risk variants for oral clefts in multiplex families
Cited by: 12
Author(s): Emily R. Holzinger, Qing Li, Margaret M. Parker, Jacqueline B. Hetmanski, Mary L. Marazita, Elisabeth Mangold, Kerstin U. Ludwig, Margaret A. Taub, Ferdouse Begum, Jeffrey C. Murray, Hasan Albacha-Hejazi, Khalid Alqosayer, Giath Al-Souki, Abdullatiff Albasha Hejazi, Alan F. Scott, Terri H. Beaty, Joan E. Bailey-Wilson
Software Mentions: 1
Published: about 9 years ago

10.1002/mgg3.111

Taurodontism, variations in tooth number, and misshapened crowns inWnt10anull mice and human kindreds
Cited by: 79
Author(s): Jie Yang, Shih‐Kai Wang, Murim Choi, Brendan N. Reid, Yuanyuan Hu, Yuan Ling Lee, Curtis Herzog, Hera Kim‐Berman, Moses Lee, Paul J. Benke, Kevin C K Lloyd, James P. Simmer, Jan C.‐C. Hu
Software Mentions: 1
Published: almost 12 years ago

10.1002/mgg3.1238

Spinal muscular atrophy caused by a novel Alu ‐mediated deletion of exons 2a‐5 in SMN1 undetectable with routine genetic testing
Cited by: 6
Author(s): Ivana Jedličková, Anna Přistoupilová, Lenka Nosková, Filip Majer, Viktor Stránecký, Hana Hartmannová, Kateřina Hodaňová, Helena Trešlová, Michaela Hýblová, Peter Solár, Gabriel Minárik, Mária Giertlová, Stanislav Kmoch
Software Mentions: 1
Published: over 6 years ago

10.1002/mgg3.178

Fam83h null mice support a neomorphic mechanism for human <scp>ADHCAI</scp>
Cited by: 33
Author(s): Shih‐Kai Wang, Yuanyuan Hu, Jie Yang, Charles E. Smith, Amelia S. Richardson, Yasuo Yamakoshi, Yuan Ling Lee, Figen Seymen, Mine Koruyucu, Koray Gençay, Moses Lee, Murim Choi, Jung Wook Kim, Jan C.‐C. Hu, James P. Simmer
Software Mentions: 1
Published: almost 11 years ago

10.1007/s00438-013-0763-7

A genome-wide transcriptional profiling of sporulating Bacillus subtilis strain lacking PrpE protein phosphatase
Cited by: 0
Author(s): Adam Iwanicki, Krzysztof Hinc, Anna Ronowicz, Arkadiusz Piotrowski, Aleksandra Wołoszyk, Michał Obuchowski
Software Mentions: 1
Published: about 13 years ago

10.1186/s10020-021-00304-4

LRRC4 functions as a neuron-protective role in experimental autoimmune encephalomyelitis
Cited by: 9
Author(s): Yan Zhang, Di Li, Qingbei Zeng, Jianbo Feng, Haijuan Fu, Zhaohui Luo, Bo Xiao, Huan Yang, Minghua Wu
Software Mentions: 1
Published: over 5 years ago

10.3892/mmr.2015.3583

Analysis of gene expression profiles associated with glioma progression
Cited by: 16
Author(s): Guozhang Hu, Bo Wei, Lina Wang, Le Wang, Daliang Kong, Ying Jin, Zhigang Sun
Software Mentions: 1
Published: over 11 years ago

10.3892/mmr.2015.3363

Screening for characteristic microRNAs between pre-invasive and invasive stages of cervical cancer
Cited by: 7
Author(s): Xiaolu Zhu, Shang‐Yun Wen, Zhihong Ai, Juan Wang, Yanli Xü, Yincheng Teng
Software Mentions: 1
Published: over 11 years ago

10.1111/j.1365-2958.2012.08165.x

Mycobacterium tuberculosisWhiB4 regulates oxidative stress response to modulate survival and disseminationin vivo
Cited by: 80
Author(s): Manbeena Chawla, Pankti Parikh, Alka Saxena, MohamedHusen Munshi, Mayank R. Mehta, Deborah Mai, Anup Srivastava, K. Narasimhulu, Kevin Redding, Nimi Vashi, Dhiraj Kumar, Adrie J. C. Steyn, Amit Singh
Software Mentions: 1
Published: about 14 years ago

10.1007/s12035-018-1036-6

Evaluation of Animal Models by Comparison with Human Late-Onset Alzheimer’s Disease
Cited by: 18
Author(s): Bu Yeo Kim, Hye Sun Lim, Yoonju Kim, Yu Jin Kim, Imhoi Koo, Soo Jin Jeong
Software Mentions: 1
Published: over 8 years ago

10.1002/1878-0261.12325

Molecular subtype classification of urothelial carcinoma in Lynch syndrome
Cited by: 27
Author(s): Christina Therkildsen, Pontus Eriksson, Mattias Höglund, Mats Jönsson, Gottfrid Sjödahl, Mef Nilbert, Fredrik Liedberg
Software Mentions: 1
Published: about 8 years ago

10.15252/msb.20199427

Programmable CRISPR‐Cas transcriptional activation in bacteria
Cited by: 46
Author(s): Hsing‐I Ho, Jennifer R. Fang, Jacky Cheung, Harris H. Wang
Software Mentions: 1
Published: about 6 years ago

10.1007/s00706-018-2203-1

Reliable calibration by nonlinear standard addition method in the presence of additive interference effects
Cited by: 8
Author(s): Marcin Wieczorek, Marek Dębosz, Paweł Świt, Aleksandra Piech, Joanna Kasperek, Paweł Kościelniak
Software Mentions: 1
Published: about 8 years ago

10.1186/s40462-015-0032-y

Analysis and visualisation of movement: an interdisciplinary review
Cited by: 119
Author(s): Urška Demšar, Kevin Buchin, Francesca Cagnacci, Kamran Safi, Bettina Speckmann, Nico Van de Weghe, Daniel Weiskopf, Robert Weibel
Software Mentions: 1
Published: over 11 years ago

10.1016/j.vaccine.2011.05.065

Pneumococcal conjugate vaccination at birth in a high-risk setting: No evidence for neonatal T-cell tolerance
Cited by: 24
Author(s): Anita H. J. van den Biggelaar, William Pomat, Anthony Bosco, Suparat Phuanukoonnon, Catherine J. Devitt, Marie A. Nadal-Sims, Peter Siba, Peter Richmond, Deborah Lehmann, Patrick G. Holt
Software Mentions: 1
Published: about 15 years ago

10.3390/vaccines8020212

Investigating the Impact of Delivery System Design on the Efficacy of Self-Amplifying RNA Vaccines
Cited by: 28
Author(s): Giulia Anderluzzi, Gustavo Lou, Simona Gallorini, Michela Brazzoli, Russell Johnson, Derek T. O’Hagan, Barbara C. Baudner, Yvonne Perrie
Software Mentions: 1
Published: over 6 years ago

10.3390/vaccines8030495

Estimating the Fiscal Consequences of National Immunization Programs Using a “Government Perspective” Public Economic Framework
Cited by: 3
Author(s): Mark P. Connolly, Nikolaos Kotsopoulos
Software Mentions: 1
Published: almost 6 years ago

10.1111/vop.12597

Optical coherence tomography and molecular analysis of sudden acquired retinal degeneration syndrome ( <scp>SARDS</scp> ) eyes suggests the immune‐mediated nature of retinal damage
Cited by: 26
Author(s): Siniša D. Grozdanić, Tatjana Lazic, Helga Kecova, Kabhilan Mohan, Markus H. Kuehn
Software Mentions: 1
Published: about 8 years ago

10.14202/vetworld.2016.1287-1293

Value added by Spirulina platensis in two different diets on growth performance, gut microbiota, and meat quality of Japanese quails
Cited by: 20
Author(s): Mohamed S. Yusuf, Marwa A. Hassan, Mohamed M. Abdel-Daim, Adel S. El Nabtiti, Amira Ahmed, Sherief A Moawed, Ahmed K. Elsayed, Hengmi Cui
Software Mentions: 1
Published: over 9 years ago

10.14202/vetworld.2017.880-887

Influence of microclimatic ammonia levels on productive performance of different broilers' breeds estimated with univariate and multivariate approaches
Cited by: 15
Author(s): Essam S. Soliman, Sherif A. Moawed, Rania Hassan
Software Mentions: 1
Published: about 9 years ago

10.14202/vetworld.2018.259-267

Modeling the potential risk factors of bovine viral diarrhea prevalence in Egypt using univariable and multivariable logistic regression analyses
Cited by: 27
Author(s): Abdelfattah Selim, Mahmoud M. Elhaig, Sherif A. Moawed, E. M. El-Nahas
Software Mentions: 1
Published: over 8 years ago

10.14202/vetworld.2019.664-670

Isolation and molecular characterization of Mycoplasma spp. in sheep and goats in Egypt
Cited by: 8
Author(s): Mounier mohamed Abdel Halium, Fayez Awadalla Salib, Sherif Marouf, Emil saad Abdel Massieh
Software Mentions: 1
Published: over 7 years ago

10.1186/1743-422X-4-97

Comparative genomics of Bacillus thuringiensis phage 0305φ8-36: defining patterns of descent in a novel ancient phage lineage
Cited by: 25
Author(s): Stephen C. Hardies, Julie A. Thomas, Philip Serwer
Software Mentions: 1
Published: over 19 years ago

10.1186/1743-422X-10-164

A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid
Cited by: 32
Author(s): M. C. Herranz, Annette Niehl, Merlín Rosales, Nicola Fiore, Alan Zamorano, Antonio Granell, Vicente Pallás
Software Mentions: 1
Published: about 13 years ago

10.1186/s12985-019-1242-5

Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report
Cited by: 2
Author(s): Hany Soliman, Mohamed Abouelhoda, Mahmoud N. El Rouby, Ola Ahmed, Gamal Esmat, Zeinab K. Hassan, Mohammed M. Hafez, Dina A. Mehaney, Manojkumar Selvaraju, Rania K. Darwish, Yehia A. Osman, Abdel-Rahman N. Zekri
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12985-019-1274-x

Decay of infectious adenovirus and coliphages in freshwater habitats is differentially affected by ambient sunlight and the presence of indigenous protozoa communities
Cited by: 44
Author(s): Brian R. McMinn, Eric R. Rhodes, Emma M. Huff, Asja Korajkic
Software Mentions: 1
Published: over 6 years ago

10.1186/s12985-020-1280-z

Whole genome sequencing and genetic variations in several dengue virus type 1 strains from unusual dengue epidemic of 2017 in Vietnam
Cited by: 14
Author(s): Thuy Thi Dang, My Ha Pham, Huy Vu Bui, Duyet Van Le
Software Mentions: 1
Published: over 6 years ago

10.1093/ve/veab003

Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution
Cited by: 25
Author(s): Masashi Iwamoto, Yukino Shibata, Jun Kawasaki, Shohei Kojima, Yung‐Tsung Li, Shingo Iwami, Masamichi Muramatsu, Hui‐Lin Wu, Kazuhiro Wada, Keizō Tomonaga, Koichi Watashi, Masayuki Horie
Software Mentions: 1
Published: over 5 years ago

10.3390/v8010019

Complete Genome Sequence of Germline Chromosomally Integrated Human Herpesvirus 6A and Analyses Integration Sites Define a New Human Endogenous Virus with Potential to Reactivate as an Emerging Infection
Cited by: 43
Author(s): Joshua Tweedy, Maria A. Spyrou, Max Pearson, Dirk Laßner, Uwe Kühl, Ursula A. Gompels
Software Mentions: 1
Published: over 10 years ago

10.3390/v10010040

CRISPR-Cas Targeting of Host Genes as an Antiviral Strategy
Cited by: 32
Author(s): Shuliang Chen, Xijie Yu, Deyin Guo
Software Mentions: 1
Published: over 8 years ago

10.3390/v10060313

The Odd “RB” Phage—Identification of Arabinosylation as a New Epigenetic Modification of DNA in T4-Like Phage RB69
Cited by: 16
Author(s): Julie A. Thomas, Jared Orwenyo, Lai-Xi Wang, Lindsay W. Black
Software Mentions: 1
Published: about 8 years ago

10.3390/v12060666

Dry Panels Supporting External Quality Assessment Programs for Next Generation Sequencing-Based HIV Drug Resistance Testing
Cited by: 6
Author(s): Marc Noguera-Julián, Emma R. Lee, Robert W. Shafer, Rami Kantor, Hezhao Ji
Software Mentions: 1
Published: about 6 years ago

10.3390/v13040620

Multiple Viral Infections Detected in Phytophthora condilina by Total and Small RNA Sequencing
Cited by: 17
Author(s): Leticia Botella, T. Jung
Software Mentions: 1
Published: over 5 years ago

10.3390/v13071288

Lentiviral Vectors for Delivery of Gene-Editing Systems Based on CRISPR/Cas: Current State and Perspectives
Cited by: 25
Author(s): Wendy Dong, Boris Kantor
Software Mentions: 1
Published: about 5 years ago

10.3897/zookeys.67.704

Revision of the rove beetle genus Antimerus (Coleoptera, Staphylinidae, Staphylininae), a puzzling endemic Australian lineage of the tribe Staphylinini
Cited by: 7
Author(s): Alexey Solodovnikov, Alfred F. Newton
Software Mentions: 1
Published: almost 16 years ago

10.3897/zookeys.100.1540

Belowground carabid beetle diversity in the western Palaearctic – effects of history and climate on range-restricted taxa (Coleoptera, Carabidae)
Cited by: 21
Author(s): Andreas Schuldt, Thorsten Aßmann
Software Mentions: 1
Published: over 15 years ago

10.3897/zookeys.147.2047

Carabidae diversity along an altitudinal gradient in a Peruvian cloud forest (Coleoptera)
Cited by: 47
Author(s): Sarah A. Maveety, Robert A. Browne, Terry L. Erwin
Software Mentions: 1
Published: almost 15 years ago

10.3897/zookeys.172.1889

Review of Australasian spider flies (Diptera, Acroceridae) with a revision of Panops Lamarck
Cited by: 10
Author(s): Shaun L. Winterton
Software Mentions: 1
Published: over 14 years ago

10.3897/zookeys.365.5859

Reviewing population studies for forensic purposes: Dog mitochondrial DNA
Cited by: 9
Author(s): Sophie Verscheure, Thierry Backeljau, Stijn Desmyter
Software Mentions: 1
Published: over 12 years ago

10.1097/PR9.0000000000000944

The methyl donor S-adenosyl methionine reverses the DNA methylation signature of chronic neuropathic pain in mouse frontal cortex
Cited by: 6
Author(s): Lucas Topham, Stéphanie Grégoire, HyungMo Kang, Mali Salmon‐Divon, Elad Lax, Magali Millecamps, Moshe Szyf, Laura S. Stone
Software Mentions: 1
Published: about 5 years ago

10.1097/PR9.0000000000000620

Impact of patient information leaflets on pain medication intake behavior: a pilot study
Cited by: 13
Author(s): Julia Schmitz, Sandra Kamping, Janine Wiegratz, Maike Müller, Jan Stork, Luana Colloca, Herta Flor, Regine Klinger
Software Mentions: 1
Published: almost 9 years ago

10.12669/pjms.37.4.3618

Treatment of Chronic Large and Persistent Macular Hole by a new technique in a Tertiary Care Hospital
Cited by: 3
Author(s): Tanweer Hasan Khan, Fawad Rizvi Syed, Asaad Mahmood Syed, Lubna Feroz
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1000274

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations
Cited by: 35
Author(s): Charles J. Vaske, Carrie D. House, Truong Luu, Bryan Frank, Chen Hsiang Yeang, Norman H. Lee, Joshua M. Stuart
Software Mentions: 1
Published: over 17 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566