cran: SAM | Projects | Ecosyste.ms: Papers

10.3389/fgene.2019.00685

TDNAscan: A Software to Identify Complete and Truncated T-DNA Insertions
Cited by: 20
Author(s): Liang Sun, Yinbing Ge, Jeffrey A. Sparks, Zachary T. Robinson, Xiaofei Cheng, Jiangqi Wen, Elison B. Blancaflor
Software Mentions: 1
Published: about 7 years ago

10.1186/s13287-018-1004-0

Exosomes derived from miR-92a-3p-overexpressing human mesenchymal stem cells enhance chondrogenesis and suppress cartilage degradation via targeting WNT5A
Cited by: 279
Author(s): Guping Mao, Ziji Zhang, Shu Hu, Zhiqi Zhang, Zongkun Chang, Zhiyu Huang, Weiming Liao, Yan Kang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13287-018-1056-1

Circulating healing (CH) cells expressing BST2 are functionally activated by the injury-regulated systemic factor HGFA
Cited by: 12
Author(s): Claudia Lo Sicco, Daniele Reverberi, Federico Villa, Ulrich Pfeffer, Rodolfo Quarto, Ranieri Cancedda, Roberta Tasso
Software Mentions: 1
Published: almost 8 years ago

10.1186/1472-6785-11-5

Wildlife translocation: the conservation implications of pathogen exposure and genetic heterozygosity
Cited by: 22
Author(s): Walter M. Boyce, Mara E. Weisenberger, M. C. T. Penedo, Christine K. Johnson
Software Mentions: 1
Published: over 15 years ago

10.3389/fgene.2021.672906

Integrated Genome and Transcriptome Sequencing to Solve a Neuromuscular Puzzle: Miyoshi Muscular Dystrophy and Early Onset Primary Dystonia in Siblings of the Same Family
Cited by: 3
Author(s): Feng Zhu, Fengxiao Zhang, Lizhi Hu, Liu Hao-wen, Yahua Li
Software Mentions: 1
Published: about 5 years ago

10.1186/s12901-016-0029-1

Tinnitus- related distress: evidence from fMRI of an emotional stroop task
Cited by: 22
Author(s): Dennis Golm, Carsten Schmidt‐Samoa, Peter Dechent, Birgit Kröner‐Herwig
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2018.00686

SIRT1 Allele Frequencies in Depressed Patients of European Descent in Russia
Cited by: 6
Author(s): Lyubomir I. Aftanas, М. С. Анисименко, Darya A Berdyugina, Aleksandr Yu Garanin, В. Н. Максимов, М. И. Воевода, N. Vyalova, Н. А. Бохан, Svetlana A. Ivanova, Konstantin V. Danilenko, Sergei Kovalenko
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-213X-7-90

Alterations in transcript abundance of bovine oocytes recovered at growth and dominance phases of the first follicular wave
Cited by: 51
Author(s): Nasser Ghanem, Michael Hölker, F. Rings, Danyel Jennen, Ernst Tholen, Marc‐André Sirard, H. Torner, W. Kanitz, K. Schellander, Dawit Tesfaye
Software Mentions: 1
Published: about 19 years ago

10.1186/1479-5876-9-30

MiRNA-205 modulates cellular invasion and migration via regulating zinc finger E-box binding homeobox 2 expression in esophageal squamous cell carcinoma cells
Cited by: 120
Author(s): Kayoko Matsushima, Hajime Isomoto, Naoyuki Yamaguchi, Naoki Inoue, Haruhisa Machida, Toshiyuki Nakayama, Tomayoshi Hayashi, Masaki Kitajima, Shigekazu Hidaka, Takeshi Nagayasu, Masahiro Nakashima, Kenta Ujifuku, Norisato Mitsutake, Akira Ohtsuru, Shunichi Yamashita, Manav Korpal, Yibin Kang, Philip A. Gregory, Gregory J. Goodall, Shigeru Kohno, Kazuwa Nakao
Software Mentions: 1
Published: over 15 years ago

10.1186/s13287-018-1109-5

Sirt6 regulates efficiency of mouse somatic reprogramming and maintenance of pluripotency
Cited by: 14
Author(s): Peng Xu, Tingting Wang, Xiuzhen Liu, Nan-Yu Wang, Lihong Sun, Zhu-Qin Zhang, Hou-Zao Chen, Xiang Lv, Yue Huang, De-Pei Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-213X-9-5

Gene expression profiles during early differentiation of mouse embryonic stem cells
Cited by: 46
Author(s): Fiona C. Mansergh, Carl S. Daly, Anna L Hurley, Michael A. Wride, Susan Hunter, Martin Evans
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-213X-8-21

Expression profiling of circulating non-red blood cells in embryonic blood
Cited by: 18
Author(s): Brendan A.S. McIntyre, Cantas Alev, Hiroshi Tarui, Lars Martin Jakt, Guojun Sheng
Software Mentions: 1
Published: over 18 years ago

10.1186/s12906-018-2343-1

The effects of yoga and quiet rest on subjective levels of anxiety and physiological correlates: a 2-way crossover randomized trial
Cited by: 12
Author(s): Kembra Albracht‐Schulte, Jacalyn J. Robert-McComb
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2014.00211

Rec-8 dimorphism affects longevity, stress resistance and X-chromosome nondisjunction in C. elegans, and replicative lifespan in S. cerevisiae
Cited by: 5
Author(s): Srinivas Ayyadevara, Cagdas Tazearslan, Ramani Alla, Chenxiao Jiang, S. Michal Jazwinski, Robert J. Shmookler Reis
Software Mentions: 1
Published: about 12 years ago

10.3389/fgene.2015.00271

Characterization of circulating transfer RNA-derived RNA fragments in cattle
Cited by: 22
Author(s): Eduardo Casas, Guohong Cai, John D. Neill
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12906-015-0672-x

Uygur Medicine Xipayi Kui Jie’an Affects Gene Expression profiles in intestinal tissue Lesions in a Rat Model of Ulcerative Colitis
Cited by: 6
Author(s): Kurexi Yunusi, Jingping Zhang, Li Zhong, Gulinisha Mosha, Ajiguli Nuermaimaiti, Mairipaiti Abudula, Halmurat Upur
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2019.01396

MAC: Merging Assemblies by Using Adjacency Algebraic Model and Classification
Cited by: 8
Author(s): Li Tang, Min Li, Fang‐Xiang Wu, Yi Pan, Jianxin Wang
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.604235

Selective Sweeps Uncovering the Genetic Basis of Horn and Adaptability Traits on Fine-Wool Sheep in China
Cited by: 2
Author(s): Tingting Guo, Hongchang Zhao, Chao Yuan, Shuhong Huang, Shiwei Zhou, Zengkui Lu, Chune Niu, Jianbin Liu, Shijia Zhu, Yongna Yuan, Yuxin Yang, Xiaolong Wang, Yulin Chen, Bo‐Yi Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/1472-6882-13-206

Qingfei Xiaoyan Wan alleviates asthma through multi-target network regulation
Cited by: 15
Author(s): Zhen Zhao, Yingbo Miao, Pengwei Pan, Bin-Feng Cheng, Gang Bai, Hong Wu
Software Mentions: 1
Published: about 13 years ago

10.1186/1472-6890-9-9

CD 9 and vimentin distinguish clear cell from chromophobe renal cell carcinoma
Cited by: 28
Author(s): Ariel A. Williams, Julian P T Higgins, Hongjuan Zhao, Börje Ljungberg, James D. Brooks
Software Mentions: 1
Published: almost 17 years ago

10.3389/fnhum.2014.00975

Cerebral oscillatory activity during simulated driving using MEG
Cited by: 12
Author(s): Kotoe Sakihara, Masayuki Hirata, Koji Ebe, Kenji Kimura, Seong Yi Ryu, Yoshiyuki Kono, Nozomi Muto, Masako Yoshioka, Toshiki Yoshimine, Shiro Yorifuji
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2261-10-11

Altered expression of microRNAs in the myocardium of rats with acute myocardial infarction
Cited by: 54
Author(s): Bing Shi, Yanhong Guo, Juan Wang, Wei Gao
Software Mentions: 1
Published: over 16 years ago

10.3389/fnhum.2016.00285

Sex Differences in the Neural Correlates of Specific and General Autobiographical Memory
Cited by: 26
Author(s): Laurie Compère, Marco Sperduti, Thierry Gallarda, Adèle Anssens, Stéphanie Lion, Marion Delhommeau, Pénélope Martinelli, Anne-Dominique Devauchelle, Catherine Oppenheim, Pascale Piolino
Software Mentions: 1
Published: about 10 years ago

10.3389/fnhum.2020.00137

Neural Processing Mechanism of Mental Calculation Based on Cerebral Oscillatory Changes: A Comparison Between Abacus Experts and Novices
Cited by: 8
Author(s): Abdelkader Nasreddine Belkacem, Kanako Kiso, Etsuko Uokawa, Tetsu Goto, Shiro Yorifuji, Masayuki Hirata
Software Mentions: 1
Published: over 6 years ago

10.3389/fnhum.2013.00582

Mindfulness-induced selflessness: a MEG neurophenomenological study
Cited by: 110
Author(s): Yair Dor-Ziderman, Aviva Berkovich‐Ohana, Joseph Glicksohn, Abraham Goldstein
Software Mentions: 1
Published: over 13 years ago

10.1186/s13287-019-1381-z

Frequent retrotransposition of endogenous genes in ERCC2-deficient cells derived from a patient with xeroderma pigmentosum
Cited by: 1
Author(s): Saki Aoto, Saki Katagiri, Yi Wang, Alistair T. Pagnamenta, Rie Sakamoto-Abutani, Masashi Toyoda, Akihiro Umezawa, Koji Okamura
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnhum.2020.00118

Motor Cortical Network Plasticity in Patients With Recurrent Brain Tumors
Cited by: 15
Author(s): Lucia Bulubas, Nina Sardesh, Tavish Traut, Anne Findlay, Danielle Mizuiri, Susanne Honma, Sandro M. Krieg, Mitchel S. Berger, Srikantan S. Nagarajan, Phiroz E. Tarapore
Software Mentions: 1
Published: over 6 years ago

10.3389/fnhum.2014.00410

The role of the frontal cortex in memory: an investigation of the Von Restorff effect
Cited by: 16
Author(s): Anat Elhalal, Eddy J. Davelaar, Marius Usher
Software Mentions: 1
Published: about 12 years ago

10.3389/fnhum.2019.00184

Background Music Dependent Reduction of Aversive Perception and Its Relation to P3 Amplitude Reduction and Increased Heart Rate
Cited by: 4
Author(s): Masahiro Matsuo, Fumi Masuda, Yukiyoshi Sumi, Masahiro Takahashi, Atsushi Yoshimura, Naoto Yamada, Hiroshi Kadotani
Software Mentions: 1
Published: about 7 years ago

10.3389/fnhum.2013.00283

Context counts! social anxiety modulates the processing of fearful faces in the context of chemosensory anxiety signals
Cited by: 39
Author(s): Dirk Adolph, Lukas Meister, Bettina M. Pause
Software Mentions: 1
Published: over 13 years ago

10.3389/fnhum.2013.00933

Temporal sampling in vision and the implications for dyslexia
Cited by: 19
Author(s): Kristen Pammer
Software Mentions: 1
Published: over 12 years ago

10.3389/fnhum.2014.00990

Neurofeedback of slow cortical potentials: neural mechanisms and feasibility of a placebo-controlled design in healthy adults
Cited by: 29
Author(s): Holger Gevensleben, Björn Albrecht, Henry Lütcke, Tibor Auer, Wan Burhanuddin Wan Ilma Dewiputri, Renate Schweizer, Gunther H. Moll, Hartmut Heinrich, Aribert Rothenberger
Software Mentions: 1
Published: over 11 years ago

10.3389/fnhum.2017.00477

Walking through Architectural Spaces: The Impact of Interior Forms on Human Brain Dynamics
Cited by: 95
Author(s): Maryam Banaei, Javad Hatami, Abbas Yazdanfar, Klaus Gramann
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnhum.2018.00327

Recognizing Frustration of Drivers From Face Video Recordings and Brain Activation Measurements With Functional Near-Infrared Spectroscopy
Cited by: 32
Author(s): Klas Ihme, Anirudh Unni, Meng Zhang, Jochem W. Rieger, Meike Jipp
Software Mentions: 1
Published: about 8 years ago

10.3389/fnhum.2012.00237

Intended actions and unexpected outcomes: automatic and controlled processing in a rapid motor task
Cited by: 28
Author(s): Douglas Cheyne, Paul Ferrari, J. Allan Cheyne
Software Mentions: 1
Published: over 14 years ago

10.3389/fnhum.2013.00362

Gamma oscillatory amplitude encodes stimulus intensity in primary somatosensory cortex
Cited by: 39
Author(s): Holly E. Rossiter, Siân F. Worthen, Caroline Witton, Stephen D Hall, Paul L. Furlong
Software Mentions: 1
Published: over 13 years ago

10.3389/fnhum.2017.00209

Pupillary Response to Negative Emotional Stimuli Is Differentially Affected in Meditation Practitioners
Cited by: 23
Author(s): Alejandra Vásquez-Rosati, Enzo Brunetti, Carmen Cordero, Pedro Maldonado
Software Mentions: 1
Published: over 9 years ago

10.3389/fnhum.2014.00406

Frontal midline theta rhythm and gamma power changes during focused attention on mental calculation: an MEG beamformer analysis
Cited by: 88
Author(s): Ryouhei Ishii, Leonides Canuet, Tsutomu Ishihara, Yasunori Aoki, Shunichiro Ikeda, Masahiro Hata, Themistoklis Katsimichas, Atsuko Gunji, Hidetoshi Takahashi, Takayuki Nakahachi, Masao Iwase, Masatoshi Takeda
Software Mentions: 1
Published: about 12 years ago

10.3389/fnhum.2013.00132

A Multimodal Perspective on the Composition of Cortical Oscillations
Cited by: 24
Author(s): Kim C. Rönnqvist, Craig McAllister, Gavin L. Woodhall, Ian M. Stanford, Stephen D. Hall
Software Mentions: 1
Published: over 13 years ago

10.3389/fnhum.2020.00070

Assessing the Effectiveness of Automated Emotion Recognition in Adults and Children for Clinical Investigation
Cited by: 14
Author(s): Maria Flynn, Dimitris Effraimidis, Anastassia Angelopoulou, Epaminondas Kapetanios, David M. Williams, D. Jude Hemanth, Tony Towell
Software Mentions: 1
Published: over 6 years ago

10.3389/fnhum.2013.00940

Theta band activity in response to emotional expressions and its relationship with gamma band activity as revealed by MEG and advanced beamformer source imaging
Cited by: 18
Author(s): Qiang Luo, Xi Cheng, Tom Holroyd, Duo Xu, Frederick W. Carver, James Blair
Software Mentions: 1
Published: over 12 years ago

10.3389/fnhum.2013.00876

Tough doughnuts: affect and the modulation of attention
Cited by: 7
Author(s): Janani Dhinakaran, Maarten De Vos, Jeremy D. Thorne, Niclas Braun, Jolanda Janson, Cornelia Kranczioch
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2407-8-314

Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis
Cited by: 37
Author(s): Esther H. Lips, Ronald van Eijk, Eelco J. R. de Graaf, Jan Oosting, Noel F.C.C. de Miranda, Tom Karsten, Cornelis Jh van de Velde, Paul H.C. Eilers, Rob A.E.M. Tollenaar, Tom van Wezel, Hans Morreau
Software Mentions: 1
Published: almost 18 years ago

10.3389/fimmu.2019.01243

High TLR7 Expression Drives the Expansion of CD19+CD24hiCD38hi Transitional B Cells and Autoantibody Production in SLE Patients
Cited by: 43
Author(s): Ting Wang, John S. Marken, Janice Chen, Van Bao Tran, Quan Zhen Li, Mengtao Li, Karen Cerosaletti, Keith B. Elkon, Xiaofeng Zeng, Natalia V. Giltiay
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2407-5-29

Mutations of PIK3CAin gastric adenocarcinoma
Cited by: 160
Author(s): Vivian Li, Chi Wai Wong, Tsun Leung Chan, A. Chan, Wei Zhao, Kent‐Man Chu, Samuel So, Xin Chen, Siu Tsan Yuen, Suet Yi Leung
Software Mentions: 1
Published: over 21 years ago

10.1186/s12885-021-08260-2

Sex disparities in vitamin D status and the impact on systemic inflammation and survival in rectal cancer
Cited by: 0
Author(s): Hanna Abrahamsson, Sebastian Meltzer, Vidar Nyløkken Hagen, Christin Johansen, Paula A. Bousquet, Kathrine Røe Redalen, Anne Hansen Ree
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.02565

Myeloid Cell Hypoxia-Inducible Factors Promote Resolution of Inflammation in Experimental Colitis
Cited by: 21
Author(s): Nan Lin, Jessica E.S. Shay, Hong Xie, David S. M. Lee, Nicolas Skuli, Qiaosi Tang, Zilu Zhou, Andrew Azzam, Hu Meng, Haichao Wang, Garret A. FitzGerald, M. Celeste Simon
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2015.00138

Protein Microarrays: A New Tool for the Study of Autoantibodies in Immunodeficiency
Cited by: 26
Author(s): Jacob M. Rosenberg, Paul J. Utz
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2407-6-99

Transcription profiles of non-immortalized breast cancer cell lines
Cited by: 11
Author(s): Mariana Fernandez-Cobo, James F. Holland, Beatríz G. T. Pogo
Software Mentions: 1
Published: over 20 years ago

10.1186/1471-2407-13-371

BAP1 deficiency causes loss of melanocytic cell identity in uveal melanoma
Cited by: 123
Author(s): Katie A. Matatall, Olga A. Agapova, Michael D. Onken, Lori A. Worley, Anne M. Bowcock, J. William Harbour
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2407-5-66

Differential gene expression profile reveals deregulation of pregnancy specific β1 glycoprotein 9 early during colorectal carcinogenesis
Cited by: 37
Author(s): Sima Salahshor, Jason Gonçalves, Runjan Chetty, Steven Gallinger, James R. Woodgett
Software Mentions: 1
Published: about 21 years ago

10.3389/fimmu.2015.00304

Emergent Transcriptomic Technologies and Their Role in the Discovery of Biomarkers of Liver Transplant Tolerance
Cited by: 10
Author(s): Sotiris Mastoridis, Marc Martínez‐Llordella, Alberto Sánchez–Fueyo
Software Mentions: 1
Published: about 11 years ago

10.3389/fimmu.2018.00600

Novel Platforms for the Development of a Universal Influenza Vaccine
Cited by: 79
Author(s): Arun Kumar, Trine Sundebo Meldgaard, Sylvie Bertholet
Software Mentions: 1
Published: over 8 years ago

10.1186/s13287-020-01649-z

Characterization of immortalized human islet stromal cells reveals a MSC-like profile with pancreatic features
Cited by: 5
Author(s): Orianne Villard, Mathieu Armanet, Guilhem Couderc, Claire Bony, Jérôme Moreaux, Danièle Noël, John De Vos, Bernard Klein, Jean-Luc Veyrune, Anne Wojtusciszyn
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.00544

Neutralizing Anti-Cytokine Autoantibodies Against Interferon-α in Immunodysregulation Polyendocrinopathy Enteropathy X-Linked
Cited by: 37
Author(s): Jacob M. Rosenberg, Maria Elena Maccari, Federica Barzaghi, Eric J. Allenspach, Claudio Pignata, Giovanna Weber, Troy R. Torgerson, Paul J. Utz, Rosa Bacchetta
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2019.01223

Interleukin-1β Inhibition for Chronic Kidney Disease in Obese Mice With Type 2 Diabetes
Cited by: 49
Author(s): Yutian Lei, Satish Kumar Devarapu, Manga Motrapu, Clemens D. Cohen, Maja T. Lindenmeyer, Solange Moll, Sanjeev Kumar, Hans‐Joachim Anders
Software Mentions: 1
Published: about 7 years ago

10.1186/s13287-020-01813-5

Human umbilical cord multipotent mesenchymal stromal cells alleviate acute ischemia-reperfusion injury of spermatogenic cells via reducing inflammatory response and oxidative stress
Cited by: 13
Author(s): Zhong Liu, Ming Yang, Xiangyu Zou, Tao Du, Huiming Xu, Jie Sun
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2021.738388

Literature Mining and Mechanistic Graphical Modelling to Improve mRNA Vaccine Platforms
Cited by: 4
Author(s): Lorena Leonardelli, Giuseppe Lofano, Gianluca Selvaggio, Silvia Parolo, Stefano Giampiccolo, Danilo Tomasoni, Enrico Domenici, Corrado Priami, Haifeng Song, Duccio Medini, Luca Marchetti, Emilio Siena
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2018.02693

Pro-inflammatory Monocyte Phenotype and Cell-Specific Steroid Signaling Alterations in Unmedicated Patients With Major Depressive Disorder
Cited by: 36
Author(s): Helge Hasselmann, Stefanie Gamradt, Aline Taenzer, Jan Nowacki, Rami Zain, Kostas Patas, Caren Ramien, Friedemann Paul, Katja Wingenfeld, Dominique Piber, Stefan M. Gold, Christian Otte
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2021.672312

The Pathogenesis of Eosinophilic Asthma: A Positive Feedback Mechanism That Promotes Th2 Immune Response via Filaggrin Deficiency
Cited by: 9
Author(s): Wei Gao, Jiuyu Gong, Mi Mu, Yifang Zhu, Wenjuan Wang, Wen Chen, Ge Han, Ha-Cheol Hong, Pengtao Bao
Software Mentions: 1
Published: about 5 years ago

10.1186/1479-5876-4-50

A gene expression signature associated with survival in metastatic melanoma
Cited by: 99
Author(s): Susanna Mandruzzato, Andrea Callegaro, Gianluca Turcatel, Samuela Francescato, Maria Cristina Montesco, Vanna Chiarion-Sileni, Simone Mocellin, Carlo Róssi, Silvio Bicciato, Ena Wang, Francesco M. Marincola, Paola Zanovello
Software Mentions: 1
Published: about 20 years ago

10.1186/s13287-021-02431-5

Exosome-transported circRNA_0001236 enhances chondrogenesis and suppress cartilage degradation via the miR-3677-3p/Sox9 axis
Cited by: 49
Author(s): Guping Mao, Yiyang Xu, Dianbo Long, Hong Sun, Hongyi Li, Ruobin Xin, Ziji Zhang, Zhiwen Li, Zhi Yang, Yan Kang
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2407-13-119

Transcriptional effects of 1,25 dihydroxyvitamin D3physiological and supra-physiological concentrations in breast cancer organotypic culture
Cited by: 34
Author(s): Cíntia Mussi Milani, Maria Lúcia Hirata Katayama, Eduardo Carneiro de Lyra, Jo Ellen Welsh, Laura Tojeiro Campos, Maria Mitzi Brentani, Maria do Socorro Maciel, Rosimeire Aparecida Roela, Paulo Roberto Del Valle, João Carlos Guedes Sampaio Góes, Suely Nonogaki, Rodrigo Esaki Tamura, Maria Aparecida Azevedo Koike Folgueira
Software Mentions: 1
Published: over 13 years ago

10.3390/antiox10050678

Antioxidant Synergy of Mitochondrial Phospholipase PNPLA8/iPLA2γ with Fatty Acid–Conducting SLC25 Gene Family Transporters
Cited by: 11
Author(s): Martin Jabůrek, Pavla Průchová, Blanka Holendová, Alexander Galkin, Petr Ježek
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-015-1907-4

Iroquois homeobox 2 suppresses cellular motility and chemokine expression in breast cancer cells
Cited by: 16
Author(s): Stefan Werner, Hauke Stamm, Mutiha Pandjaitan, Dirk Kemming, Benedikt Brors, Klaus Pantel, Harriet Wikman
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2014.00804

Improved detection of artifactual viral minority variants in high-throughput sequencing data
Cited by: 4
Author(s): Matthijs R.A. Welkers, Marcel Jonges, Rienk E. Jeeninga, Marion Koopmans, Menno D. de Jong
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2016.00269

GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data
Cited by: 23
Author(s): João M. P. Alves, André Luiz de Oliveira, Tatiana Orli Milkewitz Sandberg, Jaime Leonardo Moreno-Gallego, Marcelo Toledo, Elisabeth M. M. de Moura, Liliane Santana Oliveira, Alan Mitchell Durham, Dolores Úrsula Mehnert, Paolo Marinho de Andrade Zanotto, Alejandro Reyes, Arthur Gruber
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2407-12-358

Identification of a novel set of genes reflecting different in vivo invasive patterns of human GBM cells
Cited by: 12
Author(s): Massimiliano Monticone, Antonio Daga, Simona Candiani, Francesco Romeo, Valentina Mirisola, Silvia Viaggi, Ilaria Melloni, Simona Pedemonte, Gianluigi Zona, Walter Giaretti, Ulrich Pfeffer, Patrizio Castagnola
Software Mentions: 1
Published: about 14 years ago

10.4061/2010/602068

Alteration of Differentiation Potentials by Modulating GATA Transcription Factors in Murine Embryonic Stem Cells
Cited by: 12
Author(s): Callinice D. Capo-chichi, Jennifer L. Smedberg, Malgorzata E. Rula, Émmanuelle Nicolas, Anthony T. Yeung, Richard F. Adamo, Andrey Frolov, Andrew K. Godwin, Xiaojin Xu
Software Mentions: 1
Published: over 16 years ago

10.1016/j.str.2011.07.003

RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn
Cited by: 58
Author(s): Kersten T. Schroeder, Peter Daldrop, David M.J. Lilley
Software Mentions: 1
Published: almost 15 years ago

10.3390/nu12123803

Piece of Cake: Coping with COVID-19
Cited by: 13
Author(s): Melissa J. Chee, Nikita K Koziel Ly, Hymie Anisman, Kimberly Matheson
Software Mentions: 1
Published: over 5 years ago

10.1093/sysbio/syz035

Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)
Cited by: 66
Author(s): Marie Kristine Brandrud, Juliane Baar, María Teresa Cáceres Lorenzo, Alexander Athanasiadis, Richard M. Bateman, Mark W. Chase, Mikael Hedrén, Ovidiu Paun
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.01115

Transcriptional Comparison Investigating the Influence of the Addition of Unsaturated Fatty Acids on Aroma Compounds During Alcoholic Fermentation
Cited by: 7
Author(s): Guoliang Yan, Liangliang Duan, Pei-Tong Liu, Chang‐Qing Duan
Software Mentions: 1
Published: over 7 years ago

10.1186/s13643-015-0084-5

Risk factors for hospital re-presentation among older adults following fragility fractures: protocol for a systematic review
Cited by: 2
Author(s): Saira Mathew, Kristiann C. Heesch, Elise Gane, Steven McPhail
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2020.537935

New Conjugated Compound T5 Epidioxy-Sterol-ANB Inhibits the Growth of Mycobacterium tuberculosis Affecting the Cholesterol and Folate Pathways
Cited by: 0
Author(s): Andrés Baena, Emanuel Vasco, Manuel Pastrana, Juan F. Alzate, Luis F. Barrera, Alejandro Martínez Martínez
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2014.00255

Identification of overexpressed genes in Sodalis glossinidius inhabiting trypanosome-infected self-cured tsetse flies
Cited by: 5
Author(s): Illiassou Hamidou Soumana, Bernadette Tchicaya, Béatrice Loriod, Pascal Rihet, Anne Geiger
Software Mentions: 1
Published: about 12 years ago

10.1186/s12885-018-4993-2

MiR-10a and HOXB4 are overexpressed in atypical myeloproliferative neoplasms
Cited by: 9
Author(s): Pierre‐Yves Dumas, Olivier Mansier, Valérie Prouzet‐Mauléon, Junji Koya, Arnaud Villacreces, Philippe Brunet de la Grange, Damien Luque Paz, Audrey Bidet, Jean‐Max Pasquet, Vincent Perreten, Franck Salin, Mineo Kurokawa, François‐Xavier Mahon, Bruno Cardinaud, Éric Lippert
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12885-015-1067-6

Identification of a novel microRNA signature associated with intrahepatic cholangiocarcinoma (ICC) patient prognosis
Cited by: 31
Author(s): Mei Yin Zhang, Shu Hong Li, Guo Liang Huang, Lin Guo, Ze Yu Shuang, Xiang-Ming Lao, Li Xu, Xiao Jun Lin, Hui Yun Wang, Sheng Ping Li
Software Mentions: 1
Published: over 11 years ago

10.1007/s11749-017-0571-1

Exact testing with random permutations
Cited by: 51
Author(s): Jesse Hemerik, Jelle J. Goeman
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.01232

Robust Virome Profiling and Whole Genome Reconstruction of Viruses and Viroids Enabled by Use of Available mRNA and sRNA-Seq Datasets in Grapevine (Vitis vinifera L.)
Cited by: 19
Author(s): V. Kavi Sidharthan, Amitha Mithra Sevanthi, Sarika Jaiswal, V. K. Baranwal
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.01025

Transcriptional and Antagonistic Responses of Biocontrol Strain Lysobacter enzymogenes OH11 to the Plant Pathogenic Oomycete Pythium aphanidermatum
Cited by: 29
Author(s): Yangyang Zhao, Guoliang Qian, Chen Yuan, Liangcheng Du, Fengquan Liu
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.01033

“Candidatus Propionivibrio aalborgensis”: A Novel Glycogen Accumulating Organism Abundant in Full-Scale Enhanced Biological Phosphorus Removal Plants
Cited by: 77
Author(s): Mads Albertsen, Simon Jon McIlroy, Mikkel Stokholm-Bjerregaard, Søren Michael Karst, Per Halkjær Nielsen
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2017.01622

Inhabited or Uninhabited? Pitfalls in the Interpretation of Possible Chemical Signatures of Extraterrestrial Life
Cited by: 16
Author(s): S. W. Fox, Henry Strasdeit
Software Mentions: 1
Published: almost 9 years ago

10.1007/s00122-016-2746-7

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome
Cited by: 172
Author(s): Wayne E. Clarke, Erin E. Higgins, Joerg Plieske, Ralf Wieseke, Christine Sidebottom, Yogendra Khedikar, Jacqueline Batley, David Edwards, Jinling Meng, Ruiyuan Li, Cindy Lawley, Jérôme Pauquet, Benjamin Laga, Wing‐Yee Cheung, Federico L. Iñiguez-Luy, Emmanuelle Dyrszka, S.J. Rae, Benjamin Stich, Rod J. Snowdon, Andrew Sharpe, Martin W. Ganal, Isobel A. P. Parkin
Software Mentions: 1
Published: about 10 years ago

10.1186/s12885-017-3620-y

Disease-stabilizing treatment based on all-trans retinoic acid and valproic acid in acute myeloid leukemia – identification of responders by gene expression profiling of pretreatment leukemic cells
Cited by: 18
Author(s): Håkon Reikvam, Randi Hovland, Rakel Brendsdal Forthun, Sigrid Erdal, Bjørn Tore Gjertsen, Hanne Fredly, Øystein Bruserud
Software Mentions: 1
Published: almost 9 years ago

10.3390/antiox10010101

Visceral Adipose Tissue of Prediabetic and Diabetic Females Shares a Set of Similarly Upregulated microRNAs Functionally Annotated to Inflammation, Oxidative Stress and Insulin Signaling
Cited by: 13
Author(s): Justyna Strycharz, Adam Wróblewski, Andrzej Zieleniak, Ewa Świderska, Tomasz Matyjas, Monika Rucińska, Lech Pomorski, Piotr Czarny, Janusz Szemraj, Józef Drzewoski, Agnieszka Śliwińska
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.664011

Transcriptional Profiling of Myceliophthora thermophila on Galactose and Metabolic Engineering for Improved Galactose Utilization
Cited by: 3
Author(s): Hanyu Wang, Tao Sun, Zhao Zhi-qiang, Shuying Gu, Qian Liu, Theodore Y. Wu, Depei Wang, Chaoguang Tian, Jingen Li
Software Mentions: 1
Published: over 5 years ago

10.1007/s00122-021-03869-0

Identification of blossom-end rot loci using joint QTL-seq and linkage-based QTL mapping in tomato
Cited by: 8
Author(s): Yasin Topcu, Manoj Sapkota, Eudald Illa-Berenguer, Savithri U. Nambeesan, Esther van der Knaap
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.01037

Honey Bee Suppresses the Parasitic Mite Vitellogenin by Antimicrobial Peptide
Cited by: 9
Author(s): Yunfei Wu, Qiushi Liu, Benjamin Weiß, Martin Kaltenpoth, Tatsuhiko Kadowaki
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.01182

Wild-Type MIC Distribution for Re-evaluating the Critical Concentration of Anti-TB Drugs and Pharmacodynamics Among Tuberculosis Patients From South India
Cited by: 6
Author(s): Azger Dusthackeer, Shainaba A. Saadhali, Manonanthini Thangam, Sameer Hassan, B. Mahizhaveni, Angayarkani Balasubramanian, Geetha Ramachandran, A. K. Hemanth Kumar, Kannan Thiruvenkadam, Govindarajan Shanmugam, Christy Rosaline Nirmal, Sam Ebenezer Rajadas, Sucharitha Kannappan Mohanvel, Rajesh Mondal
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2407-6-105

SSeCKS/Gravin/AKAP12 attenuates expression of proliferative and angiogenic genes during suppression of v-Src-induced oncogenesis
Cited by: 24
Author(s): Yongzhong Liu, Lingqiu Gao, Irwin H. Gelman
Software Mentions: 1
Published: over 20 years ago

10.3389/fmicb.2019.02527

Transcriptome and Volatilome Analysis During Growth of Brochothrix thermosphacta in Food: Role of Food Substrate and Strain Specificity for the Expression of Spoilage Functions
Cited by: 11
Author(s): Nassima Illikoud, Rodérick Gohier, Dalal Werner, Célia Barrachina, David Roche, Emmanuel Jaffrès, Monique Zagorec
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2407-8-189

TDAG51 is an ERK signaling target that opposes ERK-mediated HME16C mammary epithelial cell transformation
Cited by: 43
Author(s): Michael Oberst, Stacey J Beberman, Lei Zhao, Juan Juan Yin, Yvona Ward, Kathleen Kelly
Software Mentions: 1
Published: about 18 years ago

10.1186/1742-4682-10-37

Modelling gene expression profiles related to prostate tumor progression using binary states
Cited by: 3
Author(s): Emmanuel Martínez, Víctor Treviño
Software Mentions: 1
Published: about 13 years ago

10.3389/fmicb.2013.00040

Global Molecular Analyses of Methane Metabolism in Methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part I: Transcriptomic Study
Cited by: 68
Author(s): Janet B. Matsen, Song Yang, Lisa Y. Stein, David A. C. Beck, Marina G. Kalyuzhnaya
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2017.02187

miR-194 Inhibits Innate Antiviral Immunity by Targeting FGF2 in Influenza H1N1 Virus Infection
Cited by: 27
Author(s): Keyu Wang, Lai Chen, Huiying Gu, Lingna Zhao, Min Xia, Peng Yang, Xiliang Wang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2021.696730

Functional Mapping of Phenotypic Plasticity of Staphylococcus aureus Under Vancomycin Pressure
Cited by: 1
Author(s): Dengcheng Yang, Xiaoliang Zheng, Libo Jiang, Meixia Ye, Xiaoqing He, Yi Jin, Rongling Wu
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2407-7-84

Global gene expression analysis of the mouse colonic mucosa treated with azoxymethane and dextran sodium sulfate
Cited by: 63
Author(s): Rikako Suzuki, Shingo Miyamoto, Yumiko Yasui, Shigeyuki Sugie, Takuji Tanaka
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-7-414

Semi-supervised discovery of differential genes
Cited by: 2
Author(s): Shigeyuki Oba, Shin lshii
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2105-11-299

poolMC: Smart pooling of mRNA samples in microarray experiments
Cited by: 35
Author(s): Raghunandan M. Kainkaryam, Angela Bruex, Anna C. Gilbert, John Schiefelbein, Peter J. Woolf
Software Mentions: 1
Published: about 16 years ago

Projects: cran: SAM

Science Score: 85/100

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Penalties:

Papers Mentioning SAM 4,566