cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-15-89

TSSAR: TSS annotation regime for dRNA-seq data
Cited by: 52
Author(s): Fabian Amman, Michael T. Wolfinger, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler, Sven Findeiß
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2105-5-201

Cited by: 12
Author(s): Kayvan Najarian, Maryam Zaheri, Ali Ajdari Rad, Siamak Najarian, Javad Dargahi
Software Mentions: 1
Published: almost 23 years ago

10.1038/s41598-018-32063-4

Affective computing in virtual reality: emotion recognition from brain and heartbeat dynamics using wearable sensors
Cited by: 220
Author(s): Javier Marín‐Morales, Alberto Greco, Jaime Guixeres, Carmen Llinares, Enzo Pasquale Scilingo, Mariano Alcañíz, Gaetano Valenza
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-32788-2

Scanning Acoustic Microscopy and Time-Resolved Fluorescence Spectroscopy for Characterization of Atherosclerotic Plaques
Cited by: 13
Author(s): Bükem Bilen, Belkıs Gökbulut, Ülkü Kafa, Emre Heves, Mehmet Nacı Incı, Mehmet Ünlü
Software Mentions: 1
Published: about 8 years ago

10.1002/mgg3.20

Twin mitochondrial sequence analysis
Cited by: 11
Author(s): Yosr Bouhlal, Selena R. Martinez, Henry Gong, Kevin Dumas, Joseph T.C. Shieh
Software Mentions: 1
Published: over 13 years ago

10.1002/mgg3.320

Analysis of sequence data to identify potential risk variants for oral clefts in multiplex families
Cited by: 12
Author(s): Emily R. Holzinger, Qing Li, Margaret M. Parker, Jacqueline B. Hetmanski, Mary L. Marazita, Elisabeth Mangold, Kerstin U. Ludwig, Margaret A. Taub, Ferdouse Begum, Jeffrey C. Murray, Hasan Albacha-Hejazi, Khalid Alqosayer, Giath Al-Souki, Abdullatiff Albasha Hejazi, Alan F. Scott, Terri H. Beaty, Joan E. Bailey-Wilson
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.11963

Quercetin ameliorates Aβ toxicity inDrosophilaAD model by modulating cell cycle-related protein expression
Cited by: 42
Author(s): Yan Kong, Ké Li, Tingting Fu, Chao Wan, Dongdong Zhang, Hang Song, Yao Zhang, Na Liu, Zhenji Gan, Yuan Liu
Software Mentions: 1
Published: about 10 years ago

10.1002/mgg3.111

Taurodontism, variations in tooth number, and misshapened crowns inWnt10anull mice and human kindreds
Cited by: 79
Author(s): Jie Yang, Shih‐Kai Wang, Murim Choi, Brendan N. Reid, Yuanyuan Hu, Yuan Ling Lee, Curtis Herzog, Hera Kim‐Berman, Moses Lee, Paul J. Benke, Kevin C K Lloyd, James P. Simmer, Jan C.‐C. Hu
Software Mentions: 1
Published: about 12 years ago

10.1002/mgg3.1238

Spinal muscular atrophy caused by a novel Alu ‐mediated deletion of exons 2a‐5 in SMN1 undetectable with routine genetic testing
Cited by: 6
Author(s): Ivana Jedličková, Anna Přistoupilová, Lenka Nosková, Filip Majer, Viktor Stránecký, Hana Hartmannová, Kateřina Hodaňová, Helena Trešlová, Michaela Hýblová, Peter Solár, Gabriel Minárik, Mária Giertlová, Stanislav Kmoch
Software Mentions: 1
Published: over 6 years ago

10.1002/mgg3.178

Fam83h null mice support a neomorphic mechanism for human <scp>ADHCAI</scp>
Cited by: 33
Author(s): Shih‐Kai Wang, Yuanyuan Hu, Jie Yang, Charles E. Smith, Amelia S. Richardson, Yasuo Yamakoshi, Yuan Ling Lee, Figen Seymen, Mine Koruyucu, Koray Gençay, Moses Lee, Murim Choi, Jung Wook Kim, Jan C.‐C. Hu, James P. Simmer
Software Mentions: 1
Published: about 11 years ago

10.1007/s00438-013-0763-7

A genome-wide transcriptional profiling of sporulating Bacillus subtilis strain lacking PrpE protein phosphatase
Cited by: 0
Author(s): Adam Iwanicki, Krzysztof Hinc, Anna Ronowicz, Arkadiusz Piotrowski, Aleksandra Wołoszyk, Michał Obuchowski
Software Mentions: 1
Published: over 13 years ago

10.1186/s10020-021-00304-4

LRRC4 functions as a neuron-protective role in experimental autoimmune encephalomyelitis
Cited by: 9
Author(s): Yan Zhang, Di Li, Qingbei Zeng, Jianbo Feng, Haijuan Fu, Zhaohui Luo, Bo Xiao, Huan Yang, Minghua Wu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-34004-7

Amplification of the Melanocortin-1 Receptor in Nephrotic Syndrome Identifies a Target for Podocyte Cytoskeleton Stabilization
Cited by: 13
Author(s): Lovisa Bergwall, Hanna Wallentin, Johannes Elvin, Peidi Liu, Roberto Boi, Carina Sihlbom, Kyle Hayes, Dale Wright, Börje Haraldsson, Jenny Nyström, Lisa Buvall
Software Mentions: 1
Published: almost 8 years ago

10.3892/mmr.2015.3583

Analysis of gene expression profiles associated with glioma progression
Cited by: 16
Author(s): Guozhang Hu, Bo Wei, Lina Wang, Le Wang, Daliang Kong, Ying Jin, Zhigang Sun
Software Mentions: 1
Published: over 11 years ago

10.3892/mmr.2015.3363

Screening for characteristic microRNAs between pre-invasive and invasive stages of cervical cancer
Cited by: 7
Author(s): Xiaolu Zhu, Shang‐Yun Wen, Zhihong Ai, Juan Wang, Yanli Xü, Yincheng Teng
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2180-9-81

Brucella melitensis global gene expression study provides novel information on growth phase-specific gene regulation with potential insights for understanding Brucella:host initial interactions
Cited by: 36
Author(s): C Rossetti, Cristi L. Galindo, Sara D. Lawhon, Harold R. Garner, L. Garry Adams
Software Mentions: 1
Published: over 17 years ago

10.1111/j.1365-2958.2012.08165.x

Mycobacterium tuberculosisWhiB4 regulates oxidative stress response to modulate survival and disseminationin vivo
Cited by: 80
Author(s): Manbeena Chawla, Pankti Parikh, Alka Saxena, MohamedHusen Munshi, Mayank R. Mehta, Deborah Mai, Anup Srivastava, K. Narasimhulu, Kevin Redding, Nimi Vashi, Dhiraj Kumar, Adrie J. C. Steyn, Amit Singh
Software Mentions: 1
Published: about 14 years ago

10.1111/acel.12619

Transcription factors CEP-1/p53 and CEH-23 collaborate with AAK-2/AMPK to modulate longevity in Caenorhabditiselegans.
Cited by: 21
Author(s): Hung‐Hao Chang, Steve Pisano, Amaresh Chaturbedi, Jennifer Chen, Sarah Gordon, Aiswarya Baruah, Siu Sylvia Lee
Software Mentions: 1
Published: over 9 years ago

10.1007/s12035-018-1036-6

Evaluation of Animal Models by Comparison with Human Late-Onset Alzheimer’s Disease
Cited by: 18
Author(s): Bu Yeo Kim, Hye Sun Lim, Yoonju Kim, Yu Jin Kim, Imhoi Koo, Soo Jin Jeong
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-37480-z

Determination of Ultrastructural Properties of Human Carotid Atherosclerotic Plaques by Scanning Acoustic Microscopy, Micro-Computer Tomography, Scanning Electron Microscopy and Energy Dispersive X-Ray Spectroscopy
Cited by: 8
Author(s): Bükem Bilen, Leyla Türker Şener, Işıl Albeniz, Meltem Sezen, Mehmet Ünlü, Murat Uğurlucan
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-36859-2

Cellular and animal models of skin alterations in the autism-related ADNP syndrome
Cited by: 26
Author(s): Pilar Mollinedo, Oxana Kapitansky, Domingo González‐Lamuño, Adi Zaslavsky, Pedro J. Real, Illana Gozes, Alberto Gandarillas, José L. Fernández-Luna
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2180-10-100

Virulence-related Mycobacterium avium subsp hominissuis MAV_2928 gene is associated with vacuole remodeling in macrophages
Cited by: 30
Author(s): Samradhni S Jha, Lia Danelishvili, Dirk Wagner, J. Mäser, Yongjun Li, Ivana Morić, Stefan Vogt, Yoshitaka Yamazaki, Barry Lai, Luiz E. Bermudez
Software Mentions: 1
Published: over 16 years ago

10.1186/s12859-019-2690-z

Spatial quorum sensing modelling using coloured hybrid Petri nets and simulative model checking
Cited by: 12
Author(s): David Gilbert, Monika Heiner, Leila Ghanbar, Jacek Chodak
Software Mentions: 1
Published: over 7 years ago

10.1002/1878-0261.12325

Molecular subtype classification of urothelial carcinoma in Lynch syndrome
Cited by: 27
Author(s): Christina Therkildsen, Pontus Eriksson, Mattias Höglund, Mats Jönsson, Gottfrid Sjödahl, Mef Nilbert, Fredrik Liedberg
Software Mentions: 1
Published: over 8 years ago

10.1186/s12874-017-0357-x

Changes in affect after completing a mailed survey about trauma: two pre- and post-test studies in former disability applicants for posttraumatic stress disorder
Cited by: 3
Author(s): Maureen Murdoch, Shannon M. Kehle‐Forbes, Melissa R. Partin
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6947-10-34

Electronic patient self-assessment and management (SAM): a novel framework for cancer survivorship
Cited by: 32
Author(s): Andrew J. Vickers, Talya Salz, Ethan Basch, Matthew R. Cooperberg, Peter R. Carroll, Foss Tighe, James A. Eastham, Raymond C. Rosen
Software Mentions: 1
Published: over 16 years ago

10.1186/s12911-018-0685-8

A longitudinal feature selection method identifies relevant genes to distinguish complicated injury and uncomplicated injury over time
Cited by: 5
Author(s): Suyan Tian, Chi Wang, Howard H. Chang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-38702-8

Comparative Physiological and Metabolic Analysis Reveals a Complex Mechanism Involved in Drought Tolerance in Chickpea (Cicer arietinum L.) Induced by PGPR and PGRs
Cited by: 162
Author(s): Naeem Khan, Asghari Bano, Rahman Ma, J. Guo, Zhiyu Kang, Babar Ma
Software Mentions: 1
Published: over 7 years ago

10.15252/msb.20199427

Programmable CRISPR‐Cas transcriptional activation in bacteria
Cited by: 46
Author(s): Hsing‐I Ho, Jennifer R. Fang, Jacky Cheung, Harris H. Wang
Software Mentions: 1
Published: over 6 years ago

10.1007/s00706-018-2203-1

Reliable calibration by nonlinear standard addition method in the presence of additive interference effects
Cited by: 8
Author(s): Marcin Wieczorek, Marek Dębosz, Paweł Świt, Aleksandra Piech, Joanna Kasperek, Paweł Kościelniak
Software Mentions: 1
Published: about 8 years ago

10.1186/s40462-015-0032-y

Analysis and visualisation of movement: an interdisciplinary review
Cited by: 119
Author(s): Urška Demšar, Kevin Buchin, Francesca Cagnacci, Kamran Safi, Bettina Speckmann, Nico Van de Weghe, Daniel Weiskopf, Robert Weibel
Software Mentions: 1
Published: over 11 years ago

10.1016/j.vaccine.2011.05.065

Pneumococcal conjugate vaccination at birth in a high-risk setting: No evidence for neonatal T-cell tolerance
Cited by: 24
Author(s): Anita H. J. van den Biggelaar, William Pomat, Anthony Bosco, Suparat Phuanukoonnon, Catherine J. Devitt, Marie A. Nadal-Sims, Peter Siba, Peter Richmond, Deborah Lehmann, Patrick G. Holt
Software Mentions: 1
Published: over 15 years ago

10.1186/1472-6947-12-136

A multiscale and multiparametric approach for modeling the progression of oral cancer
Cited by: 32
Author(s): Konstantinos Exarchos, Yorgos Goletsis, Dimitrios I. Fotiadis
Software Mentions: 1
Published: almost 14 years ago

10.3390/vaccines8020212

Investigating the Impact of Delivery System Design on the Efficacy of Self-Amplifying RNA Vaccines
Cited by: 28
Author(s): Giulia Anderluzzi, Gustavo Lou, Simona Gallorini, Michela Brazzoli, Russell Johnson, Derek T. O’Hagan, Barbara C. Baudner, Yvonne Perrie
Software Mentions: 1
Published: over 6 years ago

10.3390/vaccines8030495

Estimating the Fiscal Consequences of National Immunization Programs Using a “Government Perspective” Public Economic Framework
Cited by: 3
Author(s): Mark P. Connolly, Nikolaos Kotsopoulos
Software Mentions: 1
Published: about 6 years ago

10.1111/vop.12597

Optical coherence tomography and molecular analysis of sudden acquired retinal degeneration syndrome ( <scp>SARDS</scp> ) eyes suggests the immune‐mediated nature of retinal damage
Cited by: 26
Author(s): Siniša D. Grozdanić, Tatjana Lazic, Helga Kecova, Kabhilan Mohan, Markus H. Kuehn
Software Mentions: 1
Published: about 8 years ago

10.14202/vetworld.2016.1287-1293

Value added by Spirulina platensis in two different diets on growth performance, gut microbiota, and meat quality of Japanese quails
Cited by: 20
Author(s): Mohamed S. Yusuf, Marwa A. Hassan, Mohamed M. Abdel-Daim, Adel S. El Nabtiti, Amira Ahmed, Sherief A Moawed, Ahmed K. Elsayed, Hengmi Cui
Software Mentions: 1
Published: almost 10 years ago

10.14202/vetworld.2017.880-887

Influence of microclimatic ammonia levels on productive performance of different broilers' breeds estimated with univariate and multivariate approaches
Cited by: 15
Author(s): Essam S. Soliman, Sherif A. Moawed, Rania Hassan
Software Mentions: 1
Published: about 9 years ago

10.14202/vetworld.2018.259-267

Modeling the potential risk factors of bovine viral diarrhea prevalence in Egypt using univariable and multivariable logistic regression analyses
Cited by: 27
Author(s): Abdelfattah Selim, Mahmoud M. Elhaig, Sherif A. Moawed, E. M. El-Nahas
Software Mentions: 1
Published: over 8 years ago

10.14202/vetworld.2019.664-670

Isolation and molecular characterization of Mycoplasma spp. in sheep and goats in Egypt
Cited by: 8
Author(s): Mounier mohamed Abdel Halium, Fayez Awadalla Salib, Sherif Marouf, Emil saad Abdel Massieh
Software Mentions: 1
Published: over 7 years ago

10.1186/1743-422X-4-97

Comparative genomics of Bacillus thuringiensis phage 0305φ8-36: defining patterns of descent in a novel ancient phage lineage
Cited by: 25
Author(s): Stephen C. Hardies, Julie A. Thomas, Philip Serwer
Software Mentions: 1
Published: almost 20 years ago

10.1186/s12859-018-2207-1

NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
Cited by: 28
Author(s): Fang Li, Jiang Hu, Depeng Wang, Kai Wang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-39436-3

Genetic analysis of a Piezo-like protein suppressing systemic movement of plant viruses in Arabidopsis thaliana
Cited by: 38
Author(s): Zhen Zhang, Xin Tong, Songyu Liu, Long-Xiang Chai, Feifan Zhu, Xiao-Peng Zhang, Jing-Ze Zou, Xianbing Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12911-017-0416-6

The effect of a test ordering software intervention on the prescription of unnecessary laboratory tests - a randomized controlled trial
Cited by: 19
Author(s): Carlos Martins, Andréia Teixeira, Luís Filipe Azevedo, Luísa Maria Barbosa Sá, Paulo Alexandre Azevedo Pereira Santos, Nazaré Couto, Altamiro Costa‐Pereira, Alberto Augusto Oliveira Pinto Hespanhol, Cristina Santos
Software Mentions: 1
Published: over 9 years ago

10.1186/1743-422X-10-164

A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid
Cited by: 32
Author(s): M. C. Herranz, Annette Niehl, Merlín Rosales, Nicola Fiore, Alan Zamorano, Antonio Granell, Vicente Pallás
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-5-185

Cited by: 33
Author(s): Virginie Aris, Michael J. Cody, Jeff Cheng, James Dermody, Patricia Soteropoulos, Michael Recce, Peter Tolias
Software Mentions: 1
Published: almost 23 years ago

10.1186/s12985-019-1242-5

Whole-genome sequencing of human Pegivirus variant from an Egyptian patient co-infected with hepatitis C virus: a case report
Cited by: 2
Author(s): Hany Soliman, Mohamed Abouelhoda, Mahmoud N. El Rouby, Ola Ahmed, Gamal Esmat, Zeinab K. Hassan, Mohammed M. Hafez, Dina A. Mehaney, Manojkumar Selvaraju, Rania K. Darwish, Yehia A. Osman, Abdel-Rahman N. Zekri
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12985-019-1274-x

Decay of infectious adenovirus and coliphages in freshwater habitats is differentially affected by ambient sunlight and the presence of indigenous protozoa communities
Cited by: 44
Author(s): Brian R. McMinn, Eric R. Rhodes, Emma M. Huff, Asja Korajkic
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12985-020-1280-z

Whole genome sequencing and genetic variations in several dengue virus type 1 strains from unusual dengue epidemic of 2017 in Vietnam
Cited by: 14
Author(s): Thuy Thi Dang, My Ha Pham, Huy Vu Bui, Duyet Van Le
Software Mentions: 1
Published: over 6 years ago

10.1186/s12911-019-0912-y

The "Begin Exploring Fertility Options, Risks and Expectations" (BEFORE) decision aid: development and alpha testing of a fertility tool for premenopausal breast cancer patients
Cited by: 18
Author(s): Brittany Speller, Kelly Metcalfe, Erin Kennedy, Marcia Facey, Ellen Greenblatt, Adena Scheer, Ellen Warner, Anil A. Joy, Frances C. Wright, Nancy N. Baxter
Software Mentions: 1
Published: almost 7 years ago

10.1093/ve/veab003

Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution
Cited by: 25
Author(s): Masashi Iwamoto, Yukino Shibata, Jun Kawasaki, Shohei Kojima, Yung‐Tsung Li, Shingo Iwami, Masamichi Muramatsu, Hui‐Lin Wu, Kazuhiro Wada, Keizō Tomonaga, Koichi Watashi, Masayuki Horie
Software Mentions: 1
Published: almost 6 years ago

10.3390/v8010019

Complete Genome Sequence of Germline Chromosomally Integrated Human Herpesvirus 6A and Analyses Integration Sites Define a New Human Endogenous Virus with Potential to Reactivate as an Emerging Infection
Cited by: 43
Author(s): Joshua Tweedy, Maria A. Spyrou, Max Pearson, Dirk Laßner, Uwe Kühl, Ursula A. Gompels
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21197314

Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial–Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis
Cited by: 11
Author(s): Hidekazu Iwakawa, Hiro Takahashi, Yasunori Machida, Chiyoko Machida
Software Mentions: 1
Published: about 6 years ago

10.3390/v10010040

CRISPR-Cas Targeting of Host Genes as an Antiviral Strategy
Cited by: 32
Author(s): Shuliang Chen, Xijie Yu, Deyin Guo
Software Mentions: 1
Published: over 8 years ago

10.3390/v10060313

The Odd “RB” Phage—Identification of Arabinosylation as a New Epigenetic Modification of DNA in T4-Like Phage RB69
Cited by: 16
Author(s): Julie A. Thomas, Jared Orwenyo, Lai-Xi Wang, Lindsay W. Black
Software Mentions: 1
Published: over 8 years ago

10.1186/1755-8794-4-22

Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
Cited by: 247
Author(s): Wim Crielaard, Egija Zaura, Annemarie Schuller, Susan M. Huse, R.C. Montijn, Bart J. F. Keijser
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2105-13-S7-S9

Comparison of data-merging methods with SVM attribute selection and classification in breast cancer gene expression
Cited by: 38
Author(s): Vitoantonio Bevilacqua, Paolo Pannarale, Mirko Abbrescia, Claudia Cava, Angelo Paradiso, Stefania Tommasi
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-019-40930-x

A halotolerant growth promoting rhizobacteria triggers induced systemic resistance in plants and defends against fungal infection
Cited by: 27
Author(s): Sandeep Sharma, Chen Chen, Sudhir Navathe, Ramesh Chand, Sarvesh Pandey
Software Mentions: 1
Published: over 7 years ago

10.3390/v12060666

Dry Panels Supporting External Quality Assessment Programs for Next Generation Sequencing-Based HIV Drug Resistance Testing
Cited by: 6
Author(s): Marc Noguera-Julián, Emma R. Lee, Robert W. Shafer, Rami Kantor, Hezhao Ji
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8794-2-59

Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family
Cited by: 53
Author(s): Sandeep Sanga, Bradley M. Broom, Vittorio Cristini, Mary E. Edgerton
Software Mentions: 1
Published: about 17 years ago

10.3390/v13040620

Multiple Viral Infections Detected in Phytophthora condilina by Total and Small RNA Sequencing
Cited by: 17
Author(s): Leticia Botella, T. Jung
Software Mentions: 1
Published: over 5 years ago

10.3390/v13071288

Lentiviral Vectors for Delivery of Gene-Editing Systems Based on CRISPR/Cas: Current State and Perspectives
Cited by: 25
Author(s): Wendy Dong, Boris Kantor
Software Mentions: 1
Published: over 5 years ago

10.1186/1755-8794-4-77

Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features
Cited by: 38
Author(s): Vilde Drageset Haakensen, Ole Christian Lingjærde, Torben Lüders, Margit Riis, Aleix Prat, Melissa A. Troester, Marit Muri Holmen, Jan Ole Frantzen, Linda Romundstad, Dina Navjord, Ida K. Bukholm, Tom B⊘rge Johannesen, Charles M. Perou, Giske Ursin, Vessela N. Kristensen, Anne‐Lise Børresen‐Dale, Åslaug Helland
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-2-36

MLL rearrangements in pediatric acute lymphoblastic and myeloblastic leukemias: MLL specific and lineage specific signatures
Cited by: 40
Author(s): Andrea Zangrando, Marta Campo Dell’Orto, Geertruy te Kronnie, Giuseppe Basso
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-019-40729-w

Maternal Gastrointestinal Nematode Infection Up-regulates Expression of Genes Associated with Long-Term Potentiation in Perinatal Brains of Uninfected Developing Pups
Cited by: 6
Author(s): Mazhar Haque, Kristine G. Koski, Marilyn Scott
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-1-53

A global transcriptional view of apoptosis in human T-cell activation
Cited by: 24
Author(s): Min Wang, Dirk Windgassen, Eleftherios T. Papoutsakis
Software Mentions: 1
Published: almost 18 years ago

10.3897/zookeys.67.704

Revision of the rove beetle genus Antimerus (Coleoptera, Staphylinidae, Staphylininae), a puzzling endemic Australian lineage of the tribe Staphylinini
Cited by: 7
Author(s): Alexey Solodovnikov, Alfred F. Newton
Software Mentions: 1
Published: almost 16 years ago

10.3897/zookeys.100.1540

Belowground carabid beetle diversity in the western Palaearctic – effects of history and climate on range-restricted taxa (Coleoptera, Carabidae)
Cited by: 21
Author(s): Andreas Schuldt, Thorsten Aßmann
Software Mentions: 1
Published: over 15 years ago

10.3897/zookeys.147.2047

Carabidae diversity along an altitudinal gradient in a Peruvian cloud forest (Coleoptera)
Cited by: 47
Author(s): Sarah A. Maveety, Robert A. Browne, Terry L. Erwin
Software Mentions: 1
Published: almost 15 years ago

10.3897/zookeys.172.1889

Review of Australasian spider flies (Diptera, Acroceridae) with a revision of Panops Lamarck
Cited by: 10
Author(s): Shaun L. Winterton
Software Mentions: 1
Published: over 14 years ago

10.3897/zookeys.365.5859

Reviewing population studies for forensic purposes: Dog mitochondrial DNA
Cited by: 9
Author(s): Sophie Verscheure, Thierry Backeljau, Stijn Desmyter
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12920-016-0214-5

Reproducible detection of disease-associated markers from gene expression data
Cited by: 2
Author(s): Katsuhiro Omae, Osamu Komori, Shinto Eguchi
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.19351

G2/M checkpoint plays a vital role at the early stage of HCC by analysis of key pathways and genes
Cited by: 28
Author(s): Yin Li, Cuifang Chang, Chi Xu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-019-40019-5

Functional divergence of thyrotropin beta-subunit paralogs gives new insights into salmon smoltification metamorphosis
Cited by: 23
Author(s): Mitchell S. Fleming, Gersende Maugars, Anne-Gaëlle Lafont, Jocelyn Rancon, Romain Fontaine, Rasoul Nourizadeh-Lillabadi, Finn‐Arne Weltzien, Elena Santidrián Yebra-Pimentel, Ron P. Dirks, Stephen D. McCormick, Karine Rousseau, Patrick Martin, Sylvie Dufour
Software Mentions: 1
Published: over 7 years ago

10.1097/PR9.0000000000000944

The methyl donor S-adenosyl methionine reverses the DNA methylation signature of chronic neuropathic pain in mouse frontal cortex
Cited by: 6
Author(s): Lucas Topham, Stéphanie Grégoire, HyungMo Kang, Mali Salmon‐Divon, Elad Lax, Magali Millecamps, Moshe Szyf, Laura S. Stone
Software Mentions: 1
Published: over 5 years ago

10.1097/PR9.0000000000000620

Impact of patient information leaflets on pain medication intake behavior: a pilot study
Cited by: 13
Author(s): Julia Schmitz, Sandra Kamping, Janine Wiegratz, Maike Müller, Jan Stork, Luana Colloca, Herta Flor, Regine Klinger
Software Mentions: 1
Published: almost 9 years ago

10.12669/pjms.37.4.3618

Treatment of Chronic Large and Persistent Macular Hole by a new technique in a Tertiary Care Hospital
Cited by: 3
Author(s): Tanweer Hasan Khan, Fawad Rizvi Syed, Asaad Mahmood Syed, Lubna Feroz
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-38898-9

Whole exome sequencing identifies a novel intron heterozygous mutation in TSC2 responsible for tuberous sclerosis complex
Cited by: 6
Author(s): Yicong Ye, Yong Zeng
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1000274

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations
Cited by: 35
Author(s): Charles J. Vaske, Carrie D. House, Truong Luu, Bryan Frank, Chen Hsiang Yeang, Norman H. Lee, Joshua M. Stuart
Software Mentions: 1
Published: over 17 years ago

10.1038/s41598-019-41577-4

A multi-stage association study of plasma cytokines identifies osteopontin as a biomarker for acute coronary syndrome risk and severity
Cited by: 1
Author(s): Kuai Yu, Binyao Yang, Haijing Jiang, Jun Li, Kai Yan, Xuezhen Liu, Lue Zhou, Handong Yang, Xiulou Li, Xinwen Min, Ce Zhang, Xiaoting Luo, Wenhua Mei, Shan Sun, Liyun Zhang, Xiang Cheng, Meian He, Xiaomin Zhang, An Pan, Frank B. Hu, Tangchun Wu
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-3-37

The NRF2-mediated oxidative stress response pathway is associated with tumor cell resistance to arsenic trioxide across the NCI-60 panel
Cited by: 42
Author(s): Qian Liu, Hao Zhang, Lisa Smeester, Fei Zou, Matthew J. Kesic, Ilona Jaspers, Jingbo Pi, Rebecca C. Fry
Software Mentions: 1
Published: about 16 years ago

10.3390/ijms21197090

Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans
Cited by: 30
Author(s): Rajneesh Srivastava, Swapna Vidhur Daulatabad, Mansi Srivastava, Sarath Chandra Janga
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1002195

Accelerated Profile HMM Searches
Cited by: 4,510
Author(s): Sean R. Eddy
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pcbi.1002564

Coding Conspecific Identity and Motion in the Electric Sense
Cited by: 51
Author(s): Na Yu, Ginette J. Hupé, Charles J. Garfinkle, John E. Lewis, André Longtin
Software Mentions: 1
Published: over 14 years ago

10.1186/s12920-021-00981-4

The identification of novel gene mutations for degenerative lumbar spinal stenosis using whole-exome sequencing in a Chinese cohort
Cited by: 2
Author(s): Xin Jiang, Chen Dong
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-016-0195-4

Integrated analysis of omics data using microRNA-target mRNA network and PPI network reveals regulation of Gnai1 function in the spinal cord of Ews/Ewsr1 KO mice
Cited by: 5
Author(s): Chai Jin Lee, Hongryul Ahn, Sean Bong Lee, Jong Yeon Shin, Woong-Yang Park, Jong‐Il Kim, Jung‐Hee Lee, Hoon Ryu, Sun Kim
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pcbi.1000730

Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis
Cited by: 141
Author(s): Younghee Lee, Xinan Yang, Yong Huang, Huiying Fan, Qingbei Zhang, Youngfei Wu, Jiànróng Lǐ, Rifat Hasina, Chao Cheng, Mark W. Lingen, Mark Gerstein, Ralph R. Weichselbaum, H. Rosie Xing, Yves A. Lussier
Software Mentions: 1
Published: over 16 years ago

10.1186/1755-8794-1-13

The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis
Cited by: 425
Author(s): Adam I. Riker, Steven A. Enkemann, Øystein Fodstad, Suhu Liu, Shengxiang Ren, Christopher G. Morris, Yaguang Xi, Paul Howell, Brandon J. Metge, Rajeev S. Samant, Lalita A. Shevde, Wenbin Li, Steven Eschrich, Adil Daud, Jingfang Ju, Jaime Matta
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.1003069

The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch
Cited by: 24
Author(s): Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul‐ela
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-9-142

Ranking analysis of F-statistics for microarray data
Cited by: 10
Author(s): Yuan De Tan, Myriam Fornage, Hongyan Xu
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.1004344

Inferring the Clonal Structure of Viral Populations from Time Series Sequencing
Cited by: 0
Author(s): Donatien Fotso Chedom, Pablo R. Murcia, Chris Greenman
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pcbi.0030003

Using Phylogeny to Improve Genome-Wide Distant Homology Recognition
Cited by: 6
Author(s): Sanne Abeln, Carlo Teubner, Charlotte M. Deane
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-9-49

A dynamic Bayesian network approach to protein secondary structure prediction
Cited by: 62
Author(s): Xin‐Qiu Yao, Huaiqiu Zhu, Zhen‐Su She
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2105-9-S9-S10

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
Cited by: 222
Author(s): Leming Shi, Wendell Jones, Roderick V. Jensen, Stephen Harris, Roger Perkins, Federico Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Cátálin Bárbácioru, Vincent Bertholet, Xiaoxi Cao, Tzu Ming Chu, Patrick J. Collins, Xiao Hui Fan, Felix W. Frueh, James C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan Zhen Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Richard Shippy, Zhenqiang Su, Yongming Sun, Hongmei Sun, Brett T. Thorn, Yaron Turpaz, Charles Wang, Sue Jane Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2105-13-244

The LO-BaFL method and ALS microarray expression analysis
Cited by: 9
Author(s): Cristina Baciu, Kevin J. Thompson, Jean-Luc Mougeot, Benjamin Rix Brooks, Juliane Weller
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-019-44732-z

Climate change will decrease the range size of snake species under negligible protection in the Brazilian Atlantic Forest hotspot
Cited by: 33
Author(s): Ricardo Lourenço-de-Moraes, Fernando Miranda Lansac‐Tôha, Leilane Talita Fatoreto Schwind, Rodrigo Leite Arrieira, Rafael Rogério Rosa, Levi Carina Terribile, Priscila Lemes, Thiago F. Rangel, José Alexandre Felizola Diniz‐Filho, Rogério Pereira Bastos, Dayani Bailly
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-1-54

The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile
Cited by: 35
Author(s): Oi Lian Kon, Tai‐Tung Yip, Meng Fatt Ho, Weng Hoong Chan, Wai Keong Wong, Soo-Yong Tan, Wai Har Ng, Siok Yuen Kam, Alvin Kh Eng, Patrick A. Ho, Rosa Viner, Hock Soo Ong, M. Priyanthi Kumarasinghe
Software Mentions: 1
Published: almost 18 years ago

10.1186/1755-8794-6-S1-S11

A novel method for finding non-small cell lung cancer diagnosis biomarkers
Cited by: 15
Author(s): Quôc-Nam Trân
Software Mentions: 1
Published: almost 14 years ago

10.1038/s41598-019-45427-1

Network analysis of noncoding RNAs in pepper provides insights into fruit ripening control
Cited by: 28
Author(s): Jinhua Zuo, Yunxiang Wang, Beiwei Zhu, Yunbo Luo, Qing Wang, Lipu Gao
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-3-2

Gene profiling of the erythro- and megakaryoblastic leukaemias induced by the Graffi murine retrovirus
Cited by: 4
Author(s): Véronique Voisin, Philippe Legault, Diana Paulina Salazar Ospina, Yaacov Ben‐David, Éric Rassart
Software Mentions: 1
Published: over 16 years ago

Projects: cran: SAM

Science Score: 85/100

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Penalties:

Papers Mentioning SAM 4,566