10.1186/1472-6750-7-57

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
Cited by: 79
Author(s): Karol L. Thompson, P. Scott Pine, Barry A. Rosenzweig, Yaron Turpaz, Jacques D. Retief
Software Mentions: 1
Published: over 19 years ago

10.18632/oncotarget.8995

Systemic release of osteoprotegerin during oxaliplatin-containing induction chemotherapy and favorable systemic outcome of sequential radiotherapy in rectal cancer
Cited by: 12
Author(s): Sebastian Meltzer, Erta Kalanxhi, Helga Helseth Hektoen, Svein Dueland, Kjersti Flatmark, Kathrine Røe Redalen, Anne Hansen Ree
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2015.00309

How much territory can a single E. coli cell control?
Cited by: 26
Author(s): Ziad W. El-Hajj, E. B. Newman
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.17705

The landscape of DNA methylation-mediated regulation of long non-coding RNAs in breast cancer
Cited by: 12
Author(s): Chunlong Zhang, Xinyu Wang, Xuecang Li, Ning Zhao, Yihan Wang, Xiaole Han, Ce Ci, Jian Zhang, Meng Li, Yan Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fmolb.2020.564005

Identification of Tamoxifen-Resistant Breast Cancer Cell Lines and Drug Response Signature
Cited by: 3
Author(s): Qingzhou Guan, Xuekun Song, Zhenzhen Zhang, Yizhi Zhang, Yating Chen, Jing Li
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00961-18

The Pseudomonas aeruginosa Complement of Lactate Dehydrogenases Enables Use of <scp>d</scp> - and <scp>l</scp> -Lactate and Metabolic Cross-Feeding
Cited by: 31
Author(s): Yu Cheng Lin, William Cole Cornell, Jeanyoung Jo, Alexa Price-Whelan, Lars E. P. Dietrich
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.02733-18

<i>Cryptococcus deuterogattii</i> VGIIa Infection Associated with Travel to the Pacific Northwest Outbreak Region in an Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibody-Positive Patient in the United States
Cited by: 24
Author(s): Shelly Applen Clancey, Emily J. Ciccone, Marco A. Coelho, Joie Davis, Li Ding, Renée Betancourt, Samuel Glaubiger, Yueh Z. Lee, Steven M. Holland, Peter H. Gilligan, Jeffrey C. Sung, Joseph Heitman
Software Mentions: 1
Published: over 7 years ago

10.1186/2046-1682-5-4

APM_GUI: analyzing particle movement on the cell membrane and determining confinement
Cited by: 12
Author(s): Silvia Adriana Menchón, María Julia Martín, Carlos G. Dotti
Software Mentions: 1
Published: over 14 years ago

10.1007/s00401-016-1597-2

Herpes simplex encephalitis is linked with selective mitochondrial damage; a post-mortem and in vitro study
Cited by: 18
Author(s): Małgorzata Wnęk, Lorenzo Ressel, Emanuele Ricci, Carmen Rodriguez-Martinez, Julio Cesar Villalvazo Guerrero, Zarini Ismail, Colin Smith, Anja Kipar, Beate Sodeik, Patrick F. Chinnery, Tom Solomon, Michael J. Griffiths
Software Mentions: 1
Published: about 10 years ago

10.1007/s11657-019-0578-1

Ex vivo cortical porosity and thickness predictions at the tibia using full-spectrum ultrasonic guided-wave analysis
Cited by: 23
Author(s): Johannes Schneider, Gianluca Iori, Donatien Ramiandrisoa, Maroua Hammami, Melanie Gräsel, Christine Chappard, Reinhard Barkmann, Pascal Laugier, Quentin Grimal, Jean‐Gabriel Minonzio, Kay Raum
Software Mentions: 1
Published: over 7 years ago

10.3389/fninf.2014.00057

Accumulated source imaging of brain activity with both low and high-frequency neuromagnetic signals
Cited by: 61
Author(s): Jing Xiang, Qiang Luo, Rupesh Kotecha, Abraham M. Korman, Fawen Zhang, Huan Luo, Hisako Fujiwara, Nat Hemasilpin, Douglas F. Rose
Software Mentions: 1
Published: over 12 years ago

10.3389/fneur.2013.00056

Focal Peak Activities in Spread of Interictal-Ictal Discharges in Epilepsy with Beamformer MEG: Evidence for an Epileptic Network?
Cited by: 16
Author(s): Douglas F. Rose, Hisako Fujiwara, Katherine Holland‐Bouley, Hansel M. Greiner, Todd M. Arthur, Francesco T. Mangano
Software Mentions: 1
Published: over 13 years ago

10.3389/fneur.2021.633397

Clinical and Genetic Characteristics of Mitochondrial Encephalopathy Due to FOXRED1 Mutations: Two Chinese Case Reports and a Review of the Literature
Cited by: 0
Author(s): Chaoping Hu, Qiong Xu, Jin Shen, Yi Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fneur.2015.00250

Impaired Autonomic Responses to Emotional Stimuli in Autoimmune Limbic Encephalitis
Cited by: 4
Author(s): Olga Schröder, Elisabeth Schriewer, Kristin S. Golombeck, Julia Kürten, Hubertus Lohmann, Wolfram Schwindt, Heinz Wiendl, Maximilian Bruchmann, Nico Melzer, Thomas Straube
Software Mentions: 1
Published: over 10 years ago

10.3389/fneur.2018.00515

Molecular Genetic Characterization of Patients With Focal Epilepsy Using a Customized Targeted Resequencing Gene Panel
Cited by: 16
Author(s): Meng Han Tsai, Chung Kin Chan, Ying Chang, Chih Hsiang Lin, Chia Wei Liou, Wen‐Cheng Chang, Ching Ching Ng, Kheng Seang Lim, Daw Yang Hwang
Software Mentions: 1
Published: about 8 years ago

10.3389/fneur.2014.00244

Localization of Interictal Epileptiform Activity Using Magnetoencephalography with Synthetic Aperture Magnetometry in Patients with a Vagus Nerve Stimulator
Cited by: 4
Author(s): Jennifer R. Stapleton-Kotloski, Robert J. Kotloski, Jane G. Boggs, Gautam Popli, Cormac A. O’Donovan, Daniel E. Couture, Cassandra Cornell, Dwayne W. Godwin
Software Mentions: 1
Published: over 11 years ago

10.3389/fneur.2020.01000

Clinical Profile and Outcome of Pediatric Mitochondrial Myopathy in China
Cited by: 4
Author(s): Chaoping Hu, Xihua Li, Lei Zhao, Yiyun Shi, Shuizhen Zhou, Yi Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12915-015-0189-2

Using mathematical models to understand metabolism, genes, and disease
Cited by: 28
Author(s): H. Frederik Nijhout, Janet Best, Michael C. Reed
Software Mentions: 1
Published: almost 11 years ago

10.1007/s00404-020-05727-8

The effects of a music and singing intervention during pregnancy on maternal well-being and mother–infant bonding: a randomised, controlled study
Cited by: 25
Author(s): Verena Wulff, Philip Hepp, Oliver T. Wolf, Percy Balan, Carsten Hagenbeck, Tanja Fehm, Nora K. Schaal
Software Mentions: 1
Published: about 6 years ago

10.3389/fnins.2018.00273

Non-invasive Investigation of Human Hippocampal Rhythms Using Magnetoencephalography: A Review
Cited by: 44
Author(s): Yi Pu, Douglas Cheyne, Brian R. Cornwell, Blake W. Johnson
Software Mentions: 1
Published: over 8 years ago

10.3389/fnins.2018.00660

Modeling Pitch Perception With an Active Auditory Model Extended by Octopus Cells
Cited by: 5
Author(s): Tamás Harczos, F. Klefenz
Software Mentions: 1
Published: almost 8 years ago

10.3389/fnins.2014.00286

Inference of human affective states from psychophysiological measurements extracted under ecologically valid conditions
Cited by: 27
Author(s): Alberto Betella, Riccardo Zucca, Ryszard Cetnarski, Alberto Greco, Antonio Lanatà, Daniele Mazzei, Alessandro Tognetti, Xerxes D. Arsiwalla, Pedro Omedas, Danilo Emilio De Rossi, Paul F. M. J. Verschure
Software Mentions: 1
Published: almost 12 years ago

10.18632/oncotarget.10609

Chemoprevention of oxidative stress-associated oral carcinogenesis by sulforaphane depends on NRF2 and the isothiocyanate moiety
Cited by: 40
Author(s): Aixian Lan, W. Li, Yao Liu, Zhaohui Xiong, Xinyan Zhang, Shanshan Zhou, Olesya Palko, Hao Chen, Mayanga C. Kapita, Justin R. Prigge, Edward E. Schmidt, Xin Chen, Zheng Sun, Xiaoxin Luke Chen
Software Mentions: 1
Published: about 10 years ago

10.3389/fnins.2020.00710

NUTMEG: Open Source Software for M/EEG Source Reconstruction
Cited by: 13
Author(s): Leighton B. Hinkley, Corby L. Dale, Chang Cai, Johanna M. Zumer, Sarang S. Dalal, Anne Findlay, Kensuke Sekihara, Srikantan S. Nagarajan
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnins.2020.00686

Unpleasant Food Odors Modulate the Processing of Facial Expressions: An Event-Related Potential Study
Cited by: 11
Author(s): Danyang Li, Jiafeng Jia, Xiaochun Wang
Software Mentions: 1
Published: about 6 years ago

10.3389/fnins.2020.600136

Biomechanical Forces Regulate Gene Transcription During Stretch-Mediated Growth of Mammalian Neurons
Cited by: 5
Author(s): Joseph R. Loverde, Rosa E. Tolentino, Patricia Soteropoulos, Bryan J. Pfister
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2013.00214

Neural dynamics of reward probability coding: a Magnetoencephalographic study in humans
Cited by: 17
Author(s): Julie A. Thomas, Giovanna Vanni-Mercier, Jean‐Claude Dreher
Software Mentions: 1
Published: over 13 years ago

10.3389/fnins.2016.00305

Investigating Emotional Top Down Modulation of Ambiguous Faces by Single Pulse TMS on Early Visual Cortices
Cited by: 1
Author(s): Zachary Yaple, Roman Vakhrushev
Software Mentions: 1
Published: about 10 years ago

10.1128/mSphereDirect.00271-17

Fungus Causing White-Nose Syndrome in Bats Accumulates Genetic Variability in North America with No Sign of Recombination
Cited by: 25
Author(s): Jigar Trivedi, Josianne Lachapelle, Karen J. Vanderwolf, Vikram Misra, Craig K. R. Willis, John M. Ratcliffe, Rob W. Ness, James B. Anderson, Linda M. Kohn
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnins.2017.00515

Learning and CRF-Induced Indecision during Escape and Submission in Rainbow Trout during Socially Aggressive Interactions in the Stress-Alternatives Model
Cited by: 11
Author(s): Tangi R. Summers, Torrie Summers, Russ E. Carpenter, Justin Smith, Samuel L. Young, Brandon Meyerink, T. Zachary Orr, David H. Arendt, Cliff H. Summers
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnins.2020.00112

Ambulatory Assessment of Psychological and Physiological Stress on Workdays and Free Days Among Teachers. A Preliminary Study
Cited by: 16
Author(s): Alexander Wettstein, Fabienne Kühne, Wolfgang Tschacher, Roberto La Marca
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2013.00073

Adaptive cluster analysis approach for functional localization using magnetoencephalography
Cited by: 14
Author(s): Hooman Alikhanian, J. Douglas Crawford, Joseph F. X. DeSouza, Douglas Cheyne, Gunnar Blohm
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-8-371

Extended analysis of benchmark datasets for Agilent two-color microarrays
Cited by: 17
Author(s): Kathleen F. Kerr
Software Mentions: 1
Published: almost 19 years ago

10.3389/fnins.2021.689791

Dual-Threshold-Based Microstate Analysis on Characterizing Temporal Dynamics of Affective Process and Emotion Recognition From EEG Signals
Cited by: 8
Author(s): Jing Chen, Haifeng Li, Lin Ma, Hongjian Bo, Frank K. Soong, Yaohui Shi
Software Mentions: 1
Published: about 5 years ago

10.3389/fnins.2020.00452

Fetal Programming by Methyl Donors Modulates Central Inflammation and Prevents Food Addiction-Like Behavior in Rats
Cited by: 16
Author(s): Gabriela Cruz-Carrillo, Larisa Montalvo-Martínez, Marcela Cárdenas-Tueme, Sofía Bernal-Vega, Roger Maldonado-Ruíz, Diana Reséndez‐Pérez, Dalia Rodríguez‐Ríos, Gertrud Lund, Lourdes Garza-Ocañas, Alberto Camacho‐Morales
Software Mentions: 1
Published: about 6 years ago

10.3389/fnins.2021.693468

An Empirical Comparative Study on the Two Methods of Eliciting Singers’ Emotions in Singing: Self-Imagination and VR Training
Cited by: 1
Author(s): Jin Zhang, Ziming Xu, Yanqing Zhou, Pengpai Wang, Ping Fu, Xijia Xu, Daoqiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fnins.2013.00023

Semantic Classical Conditioning and Brain-Computer Interface Control: Encoding of Affirmative and Negative Thinking
Cited by: 12
Author(s): Carolin A. Ruf, Daniele De Massari, Adrian Furdea, Tamara Matuz, C Fioravanti, Linda van der Heiden, Sebastian Halder, Niels Birbaumer
Software Mentions: 1
Published: over 13 years ago

10.3389/fnins.2017.00315

Latent Growth Curve Models for Biomarkers of the Stress Response
Cited by: 31
Author(s): John M. Felt, Sarah Depaoli, Jitske Tiemensma
Software Mentions: 1
Published: about 9 years ago

10.3389/fnut.2020.596787

Impact of Intermittent Fasting on Lipid Profile–A Quasi-Randomized Clinical Trial
Cited by: 10
Author(s): Naseer Ahmed, Javeria Farooq, Hasan Salman Siddiqi, Sultan Ayoub Meo, Bibi Kulsoom, Abid Hussain Laghari, Humaira Jamshed, Farooq Pasha
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2019.00629

A Qualitative Transcriptional Signature for Predicting Recurrence Risk of Stage I-III Bladder Cancer Patients After Surgical Resection.
Cited by: 4
Author(s): Yawei Li, Huarong Zhang, You Guo, Hao Cai, Xiangyu Li, Jun He, Hung-Ming Lai, Qingzhou Guan, Xianlong Wang, Zheng Guo
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2020.574001

Analysis of miRNA-mRNA Crosstalk in Radiation-Induced Mouse Thymic Lymphomas to Identify miR-486 as a Critical Regulator by Targeting IGF2BP3 mRNA
Cited by: 2
Author(s): Hainan Zhao, Suhe Dong, Jicong Du, Penglin Xia, Ruling Liu, Tingting Liu, Yong Yang, Ying Cheng, Jianming Cai, Cong Liu, Fu Gao, Liu Hu
Software Mentions: 1
Published: over 5 years ago

10.1186/s42649-020-00045-4

Scanning acoustic microscopy for material evaluation
Cited by: 15
Author(s): Hyunung Yu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2020.00640

Identification of a Splenic Marginal Zone Lymphoma Signature: Preliminary Findings With Diagnostic Potential
Cited by: 4
Author(s): Jacob E Robinson, Timothy C. Greiner, Alyssa Bouska, Javeed Iqbal, Christine E. Cutucache
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2020.570465

The Era of Radiogenomics in Precision Medicine: An Emerging Approach to Support Diagnosis, Treatment Decisions, and Prognostication in Oncology
Cited by: 49
Author(s): Lin Shui, Haoyu Ren, Xi Yang, Jian Li, Ziwei Chen, Cheng Yi, Hong Zhu, Pixian Shui
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.00287

A Fast Online Replanning Algorithm Based on Intensity Field Projection for Adaptive Radiotherapy
Cited by: 3
Author(s): Xiaomeng Liu, Yueqiang Liang, Jian Zhu, Gang Yu, Yan Yu, Qiang Cao, X Allen Li, Baosheng Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2020.01361

Enhanced Anticancer Effect of a Combination of S-adenosylmethionine (SAM) and Immune Checkpoint Inhibitor (ICPi) in a Syngeneic Mouse Model of Advanced Melanoma
Cited by: 13
Author(s): Ali Mehdi, Mikhaël Attias, Niaz Mahmood, Ani Arakelian, Catalin Mihalcioiu, Ciriaco A. Piccirillo, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2019.00123

Genomic Comparison of Endometrioid Endometrial Carcinoma and Its Precancerous Lesions in Chinese Patients by High-Depth Next Generation Sequencing
Cited by: 23
Author(s): Yao Wang, Mei Yu, Jiaxin Yang, Dongyan Cao, Ying Zhang, Huixuan Zhou, Zhen Yuan, Keng Shen
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2017.00109

Involvement of Chromatin Remodeling Genes and the Rho GTPases RhoB and CDC42 in Ovarian Clear Cell Carcinoma
Cited by: 18
Author(s): Nicolai Skovbjerg Arildsen, Jenny-Maria Jönsson, Katarina Bartuma, Anna Ebbesson, Sofia Westbom-Fremer, Anna Måsbäck, Susanne Malander, Mef Nilbert, Ingrid Hedenfalk
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-14-325

Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
Cited by: 14
Author(s): Kris A. Christensen, Joseph P. Brunelli, Matthew J Lambert, Jenefer DeKoning, Ruth B. Phillips, Gary H. Thorgaard
Software Mentions: 1
Published: almost 13 years ago

10.3389/fpsyg.2015.00816

Emotional intelligence and recovering from induced negative emotional state
Cited by: 26
Author(s): Joaquín T. Limonero, Jordi Fernández Castro, Jordi Soler-Oritja, María Álvarez-Moleiro
Software Mentions: 1
Published: about 11 years ago

10.3389/fpsyg.2016.00180

Emotion Elicitation: A Comparison of Pictures and Films
Cited by: 95
Author(s): Meike Uhrig, N. Trautmann, Ulf Baumgärtner, Rolf‐Detlef Treede, Florian Henrich, Wolfgang Hiller, Susanne Marschall
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-10-55

Assessing and selecting gene expression signals based upon the quality of the measured dynamics
Cited by: 0
Author(s): Eric Yang, Ioannis P. Androulakis
Software Mentions: 1
Published: over 17 years ago

10.3389/fpubh.2016.00198

Taking Severe Acute Malnutrition Treatment Back to the Community: Practical Experiences from Nutrition Coverage Surveys
Cited by: 5
Author(s): Lenka Blanárová, Eleanor Rogers, Carine Magen, Sophie Woodhead
Software Mentions: 1
Published: almost 10 years ago

10.3389/fvets.2020.547891

Genomic Epidemiology of Salmonella Infantis in Ecuador: From Poultry Farms to Human Infections
Cited by: 23
Author(s): Lorena Mejía, José Luís Medina, Rosa Bayas, Carolina Satan Salazar, Fernando Villavicencio, Sonia Zapata, Jorge Matheu, Jaap A. Wagenaar, Fernando González‐Candelas, Christian Vinueza-Burgos
Software Mentions: 1
Published: almost 6 years ago

10.3389/fvets.2018.00272

Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand
Cited by: 36
Author(s): Marian Price-Carter, Rüdiger Bräuning, de Lisle Gw, Paul Livingstone, Mark A. Neill, JA Sinclair, B.M. Paterson, Gemma C. Atkinson, G.J.E. Knowles, K.B. Crews, Joseph Crispell, Rowland R. Kao, Suelee Robbe‐Austerman, Tod Stuber, Julian Parkhill, James Wood, Simon R. Harris, DM Collins
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2105-8-347

A unified framework for finding differentially expressed genes from microarray experiments
Cited by: 17
Author(s): Jahangheer Shaik, Mohammed Yeasin
Software Mentions: 1
Published: almost 19 years ago

10.3389/fvets.2021.593871

Genome Wide Prediction, Mapping and Development of Genomic Resources of Mastitis Associated Genes in Water Buffalo
Cited by: 8
Author(s): Sarika Jaiswal, Jaisri Jagannadham, Juli Kumari, Mir Asif Iquebal, Anoop Kishor Singh Gurjar, Varij Nayan, U. B. Angadi, Sunil Kumar, Rakesh Kumar, Tirtha Kumar Datta, Anil Rai, Dinesh Kumar
Software Mentions: 1
Published: about 5 years ago

10.3389/fvets.2021.619044

The Competitiveness of Beef Exports From Burkina Faso to Ghana
Cited by: 3
Author(s): Karl M. Rich, Abdrahmane Wane
Software Mentions: 1
Published: about 5 years ago

10.3389/fvets.2020.00188

Genetic Variability of 3′-Proximal Region of Genomes of Orf Viruses Isolated From Sheep and Wild Japanese Serows (Capricornis crispus) in Japan
Cited by: 4
Author(s): Kaori Shimizu, Asari Takaiwa, Shin‐nosuke Takeshima, Ayaka Okada, Yasuo Inoshima
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-15-252

Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling information
Cited by: 9
Author(s): Xin Deng, Jianlin Cheng
Software Mentions: 1
Published: about 12 years ago

10.1128/mSphere.00715-20

Tn-Seq Analysis Identifies Genes Important for Yersinia pestis Adherence during Primary Pneumonic Plague
Cited by: 8
Author(s): Kara R. Eichelberger, Victoria E. Sepúlveda, Jennifer Lynn Ford, Sara R. Selitsky, Piotr A. Mieczkowski, Joel S. Parker, William E. Goldman
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSystems.00038-15

Comprehensive Transcriptome Profiles of Streptococcus mutans UA159 Map Core Streptococcal Competence Genes
Cited by: 52
Author(s): Rabia Khan, Håkon Valen, Hedda Høvik, Heidi Aarø Åmdal, T. Chen, Donald A. Morrison, Fernanda Cristina Petersen
Software Mentions: 1
Published: over 10 years ago

10.1186/s12983-015-0132-y

Geographic body size variation in ectotherms: effects of seasonality on an anuran from the southern temperate forest
Cited by: 42
Author(s): Andrés Valenzuela‐Sánchez, Andrew A. Cunningham, Claudio Soto‐Azat
Software Mentions: 1
Published: over 10 years ago

10.1186/s40694-018-0062-5

Itaconic acid degradation in Aspergillus niger: the role of unexpected bioconversion pathways
Cited by: 17
Author(s): Abeer Hossain, Alexander Ter Beek, Peter J. Punt
Software Mentions: 1
Published: over 7 years ago

10.1186/s40694-019-0077-6

Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao
Cited by: 7
Author(s): Shahzad Ali, Asman Asman, Jonathan Shao, Amanda Patappari Firmansyah, Agung Wahyu Susilo, Ade Rosmana, Peter McMahon, Muhammad Junaid, David Guest, Tee Yei Kheng, Lyndel W. Meinhardt, Bryan A. Bailey
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.fgb.2008.10.012

Genome-wide analysis of Candida albicans gene expression patterns during infection of the mammalian kidney
Cited by: 84
Author(s): Larry P. Walker, Donna M. MacCallum, Gwyneth Bertram, Neil A. R. Gow, Frank C. Odds, Alistair J. P. Brown
Software Mentions: 1
Published: over 17 years ago

10.1186/s12859-014-0348-4

SummonChimera infers integrated viral genomes with nucleotide precision from NGS data
Cited by: 16
Author(s): Joshua P. Katz, James M. Pipas
Software Mentions: 1
Published: almost 12 years ago

10.1534/g3.113.006569

Microarray Comparison of Anterior and Posterior<i>Drosophila</i>Wing Imaginal Disc Cells Identifies Novel Wing Genes
Cited by: 16
Author(s): Daniel M. Ibrahim, Brian Biehs, Thomas B. Kornberg, Ansgar Klebes
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-8-256

HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments
Cited by: 14
Author(s): Hongya Zhao, Hong Yan
Software Mentions: 1
Published: about 19 years ago

10.1534/g3.114.012542

Transcriptome and Complexity-Reduced, DNA-Based Identification of Intraspecies Single-Nucleotide Polymorphisms in the Polyploid <i>Gossypium hirsutum</i> L.
Cited by: 22
Author(s): Qian Zhu, Andrew Spriggs, Jennifer Taylor, Danny Llewellyn, Iain W. Wilson
Software Mentions: 1
Published: almost 12 years ago

10.1534/g3.115.017541

Diversity of Maize Shoot Apical Meristem Architecture and Its Relationship to Plant Morphology
Cited by: 18
Author(s): Addie Thompson, Jianming Yu, Marja C.P. Timmermans, Patrick S. Schnable, James E. Crants, Michael J. Scanlon, Gary J. Muehlbauer
Software Mentions: 1
Published: over 11 years ago

10.1534/g3.114.011940

Genetic Control of Maize Shoot Apical Meristem Architecture
Cited by: 14
Author(s): Addie Thompson, James E. Crants, Patrick S. Schnable, Jianming Yu, Marja C.P. Timmermans, Nathan M. Springer, Michael J. Scanlon, Gary J. Muehlbauer
Software Mentions: 1
Published: about 12 years ago

10.18632/oncotarget.10891

Construction and analysis of dysregulated lncRNA-associated ceRNA network identified novel lncRNA biomarkers for early diagnosis of human pancreatic cancer
Cited by: 117
Author(s): Meng Zhou, Zhiyong Diao, Yue X, Chen Yang, Hengqiang Zhao, Cheng Liang, Jie Sun
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.115.019570

Second-Generation Linkage Maps for the Pacific Oyster<i>Crassostrea gigas</i>Reveal Errors in Assembly of Genome Scaffolds
Cited by: 58
Author(s): Dennis Hedgecock, Grace Ji-eun Shin, Andrew Y. Gracey, David Van Den Berg, Manoj P. Samanta
Software Mentions: 1
Published: almost 11 years ago

10.1534/g3.115.021279

Identification of Polymorphisms Associated with Drought Adaptation QTL in <i>Brassica napus</i> by Resequencing
Cited by: 27
Author(s): Richard S. Fletcher, David Thomas Herrmann, Jack L. Mullen, Qinfei Li, Daniel R. Schrider, Nicholas C. Price, Junjiang Lin, Kelsi Grogan, Andrew D. Kern, John McKay
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-8-S1-S5

Cross platform microarray analysis for robust identification of differentially expressed genes
Cited by: 60
Author(s): Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele Calogero, Antonella Isacchi
Software Mentions: 1
Published: over 19 years ago

10.1534/g3.115.024547

Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast
Cited by: 5
Author(s): Agnès Thierry, Varun Khanna, Bernard Dujon
Software Mentions: 1
Published: over 10 years ago

10.1186/s12859-015-0628-7

Light-weight reference-based compression of FASTQ data
Cited by: 33
Author(s): Yongpeng Zhang, Linsen Li, Yanli Yang, Xiao Yang, Shan He, Zexuan Zhu
Software Mentions: 1
Published: about 11 years ago

10.1534/g3.116.028837

Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice
Cited by: 19
Author(s): Fredrick Mwamburi Mjomba, Yanyan Zheng, Huaqing Liu, Weiqi Tang, Zonglie Hong, Zhen Wang, Weiren Wu
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-7-305

Taking U out, with two nucleases?
Cited by: 5
Author(s): I. Saira Mian, Elizabeth A. Worthey, Reza Salavati
Software Mentions: 1
Published: about 20 years ago

10.1186/1471-2105-8-435

Improving model construction of profile HMMs for remote homology detection through structural alignment
Cited by: 22
Author(s): Juliana Silva Bernardes, Alberto M. R. Dávila, Vítor Santos Costa, Gerson Zaverucha
Software Mentions: 1
Published: almost 19 years ago

10.1534/g3.116.033514

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes
Cited by: 25
Author(s): Gregory P. Way, James Rudd, Chen Wang, Habib Hamidi, Brooke L. Fridley, Gottfried E. Konecny, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Software Mentions: 1
Published: over 9 years ago

10.1128/AEM.00610-18

Effects of Ceftiofur and Chlortetracycline on the Resistomes of Feedlot Cattle
Cited by: 21
Author(s): Margaret D. Weinroth, H. M. Scott, Bo Norby, Guy H. Loneragan, Noelle Noyes, Pablo Rovira, Enrique Doster, Xiang Yang, D. R. Woerner, Paul S. Morley, K. E. Belk
Software Mentions: 1
Published: about 8 years ago

10.1534/g3.117.1124

A Large Deletion in the <i>NSDHL</i> Gene in Labrador Retrievers with a Congenital Cornification Disorder
Cited by: 13
Author(s): Anina Bauer, Michela De Lucia, Vidhya Jagannathan, Giorgia Mezzalira, Margaret L. Casal, Monika Maria Welle, Tosso Leeb
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2105-11-431

Hidden Markov model speed heuristic and iterative HMM search procedure
Cited by: 871
Author(s): L. Steven Johnson, Sean R. Eddy, Elon Portugaly
Software Mentions: 1
Published: about 16 years ago

10.1534/g3.118.300572

Genetic Diversity, Molecular Phylogeny, and Selection Evidence of Jinchuan Yak Revealed by Whole-Genome Resequencing
Cited by: 22
Author(s): Daoliang Lan, Xianrong Xiong, TserangDonko Mipam, FU Chang-xiu, Qiang Li, Yi Ai, Dingchao Hou, Zhixin Chai, Jincheng Zhong, Jian Li
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.11452

Low-dose Actinomycin-D treatment re-establishes the tumoursuppressive function of P53 in <i>RELA</i>-positive ependymoma
Cited by: 26
Author(s): Theophilos Tzaridis, Till Milde, Kristian W. Pajtler, Sebastian Bender, David Jones, Simone Müller, Andrea Wittmann, Magdalena Schlotter, Andreas E. Kulozik, Peter Lichter, V. Peter Collins, Olaf Witt, Marcel Kool, Andrey Korshunov, Stefan M. Pfister, Hendrik Witt
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-6-187

Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data
Cited by: 15
Author(s): Nitin Jain, HyungJun Cho, Michael J. OʼConnell, Duncan Lee
Software Mentions: 1
Published: about 21 years ago

10.1128/mSystems.00323-19

The Oral Mouse Microbiome Promotes Tumorigenesis in Oral Squamous Cell Carcinoma
Cited by: 44
Author(s): Philip Stashenko, Susan Yost, Yoon-Hee Choi, Theodora E. Danciu, Tsute Chen, Subbiah Yoganathan, Christine A. Kressirer, Montserrat Ruiz-Tourrella, Bikul Das, Alexis Kokaras, Jorge Frias-Lopez
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.18698

Survival of metastatic melanoma patients after dendritic cell vaccination correlates with expression of leukocyte phosphatidylethanolamine-binding protein 1/Raf kinase inhibitory protein
Cited by: 13
Author(s): Sonja I. Buschow, Matteo Ramazzotti, Inge Reinieren-Beeren, Lucie Heinzerling, Harm Westdorp, Irene Stefanini, Luca Beltrame, Stanleyson V. Hato, Eva Ellebæk, Stefanie Groß, Van Anh Nguyen, Georg Weinlich, Jiannis Ragoussis, Dilair Baban, Beatrice Schuler‐Thurner, Inge Marie Svane, Nikolaus Romani, Jonathan M. Austyn, I. Jolanda M. de Vries, Gerold Schuler, Duccio Cavalieri, Carl G. Figdor
Software Mentions: 1
Published: about 9 years ago

10.1155/2015/325934

A Comparative Numerical Study on the Performances and Vortical Patterns of Two Bioinspired Oscillatory Mechanisms: Undulating and Pure Heaving
Cited by: 8
Author(s): Mohsen Ebrahimi, M. Abbaspour
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-6-S2-S12

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
Cited by: 179
Author(s): Leming Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Zhong Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano
Software Mentions: 1
Published: about 21 years ago

10.1186/1471-2105-14-S15-S12

Quantitative synteny scoring improves homology inference and partitioning of gene families
Cited by: 9
Author(s): Raja Hashim Ali, Sayyed Auwn Muhammad, Muhammad Alam Zaib Khan, Lars Arvestad
Software Mentions: 1
Published: almost 13 years ago

10.1534/g3.119.400618

Stress Resistance Screen in a Human Primary Cell Line Identifies Small Molecules That Affect Aging Pathways and Extend Caenorhabditis elegans’ Lifespan
Cited by: 8
Author(s): Peichuan Zhang, Yuying Zhai, James M. Cregg, Kenny Kean‐Hooi Ang, Michelle R. Arkin, Cynthia Kenyon
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400747

Genome Assembly and Analysis of the North American Mountain Goat (<i>Oreamnos americanus</i>) Reveals Species-Level Responses to Extreme Environments
Cited by: 10
Author(s): Daria Martchenko, Rayan Chikhi, Aaron B. A. Shafer
Software Mentions: 1
Published: over 6 years ago

10.3390/antiox10050678

Antioxidant Synergy of Mitochondrial Phospholipase PNPLA8/iPLA2γ with Fatty Acid–Conducting SLC25 Gene Family Transporters
Cited by: 11
Author(s): Martin Jabůrek, Pavla Průchová, Blanka Holendová, Alexander Galkin, Petr Ježek
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.10125

MicroRNA-26b attenuates monocrotaline-induced pulmonary vascular remodeling via targeting connective tissue growth factor (CTGF) and cyclin D1 (CCND1)
Cited by: 19
Author(s): Ran Wang, Xing Ding, Sijing Zhou, Min Li, Sun Lee, Xuan Xu, Guanghe Fei
Software Mentions: 1
Published: about 10 years ago

10.3390/antiox10010101

Visceral Adipose Tissue of Prediabetic and Diabetic Females Shares a Set of Similarly Upregulated microRNAs Functionally Annotated to Inflammation, Oxidative Stress and Insulin Signaling
Cited by: 13
Author(s): Justyna Strycharz, Adam Wróblewski, Andrzej Zieleniak, Ewa Świderska, Tomasz Matyjas, Monika Rucińska, Lech Pomorski, Piotr Czarny, Janusz Szemraj, Józef Drzewoski, Agnieszka Śliwińska
Software Mentions: 1
Published: over 5 years ago

10.1186/s40246-019-0213-7

A novel knowledge-derived data potentizing method revealed unique liver cancer-associated genetic variants
Cited by: 6
Author(s): Naznin Sultana, Minhajur Rahman, Sanat Myti, Jikrul Islam, Muhammad Norhaffis Mustafa, Kakon Nag
Software Mentions: 1
Published: about 7 years ago

10.3205/zma001210

Language Matters: Development of an Objective Structured Language Test for Foreign Physicians - Results of a Pilot Study in Germany.
Cited by: 0
Author(s): Holger Lenz, Ansgar Opitz, Dana Huber, Fabian Jacobs, Wolfgang Gang Paik, Jörg Roche, Martin R. Fischer
Software Mentions: 1
Published: over 7 years ago