Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SAM

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SAM

Sparse Additive Modelling
9 versions
Latest release: over 3 years ago
4 dependent packages
341 downloads last month

Papers Mentioning SAM 4,566

10.1371/journal.pone.0058773
Bartonella quintana Deploys Host and Vector Temperature-Specific Transcriptomes
Cited by: 7
Author(s): Stephanie Abromaitis, Christopher S. Nelson, Domenic J. Previte, Kyong Sup Yoon, J. Marshall Clark, Joseph L. DeRisi, Jane E. Koehler
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0067202
Adaptive Geometric Tessellation for 3D Reconstruction of Anisotropically Developing Cells in Multilayer Tissues from Sparse Volumetric Microscopy Images
Cited by: 12
Author(s): Anirban Chakraborty, Mariano Perales, Venugopala Gonehal Reddy, Amit K. Roy-Chowdhury
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0006274
A Systems Biology-Based Gene Expression Classifier of Glioblastoma Predicts Survival with Solid Tumors
Cited by: 21
Author(s): Jing Zhang, Bing Liu, Xingpeng Jiang, Hengyu Zhao, Ming Z. Fan, Zhongwei Fan, John Lee, Tao Jiang, Tianzi Jiang, Shalei Song
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0190009
Unilateral nephrectomy diminishes ischemic acute kidney injury through enhanced perfusion and reduced pro-inflammatory and pro-fibrotic responses
Cited by: 19
Author(s): Casper Kierulf‐Lassen, Per Mose Nielsen, Haiyun Qi, Mads Damgaard, Christoffer Laustsen, Michael Pedersen, Susanne Krag, Henrik Birn, Rikke Nørregaard, Bente Jespersen
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0015174
Prolonged Application of High Fluid Shear to Chondrocytes Recapitulates Gene Expression Profiles Associated with Osteoarthritis
Cited by: 41
Author(s): Fei Zhu, Pu Wang, Norman H. Lee, Mary B. Goldring, Κωνσταντίνος Κωνσταντόπουλος
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0035390
A Single Nucleotide Polymorphism of the Neuropeptide B/W Receptor-1 Gene Influences the Evaluation of Facial Expressions
Cited by: 18
Author(s): Noriya Watanabe, M. Wada, Yoko Irukayama-Tomobe, Yuji Ogata, Natsuko Tsujino, Masatatsu Suzuki, Naoki Furutani, Takeshi Sakurai, Miyuki Yamamoto
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0204093
The Extreme Climate Event Database (EXCEED): Development of a picture database composed of drought and flood stimuli
Cited by: 6
Author(s): Sabrina de Sousa Magalhães, Diana Kraiser Miranda, Débora Marques de Miranda, Leandro Fernandes Malloy-Diniz, Marco Aurélio Romano-Silva
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0101297
Railway Embankments as New Habitat for Pollinators in an Agricultural Landscape
Cited by: 51
Author(s): Dawid Moroń, Piotr Skórka, Magdalena Lenda, Elżbieta Rożej-Pabijan, Marta Wantuch, Joanna Kajzer‐Bonk, Waldemar Celary, Łukasz Mielczarek, Piotr Tryjanowski
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0215077
Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis
Cited by: 8
Author(s): Ievgeniia A. Tiukova, Mats E. Pettersson, Marc P. Hoeppner, Remi André Olsen, Max Käller, Jens Nielsen, Jacques Dainat, Henrik Lantz, Jonas Söderberg, Volkmar Passoth
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0186328
A novel, efficient method for estimating the prevalence of acute malnutrition in resource-constrained and crisis-affected settings: A simulation study
Cited by: 1
Author(s): Séverine Frison, Marko Kerac, Francesco Checchi, Jennifer M. Nicholas
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0179446
Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples
Cited by: 23
Author(s): Rajendra Mandage, Marco Telford, Juan Antonio Rodríguez, Xavier Farré, Hafid Layouni, Urko M. Marigorta, Caitlin A. Cundiff, José María Heredia-Genestar, Arcadi Navarro, Gabriel Santpere
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0145064
Patterns of Vertebrate Diversity and Protection in Brazil
Cited by: 57
Author(s): Clinton N. Jenkins, Maria Alice S. Alves, Alexandre Uezu, Mariana M. Vale
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0088868
Thiol/Redox Metabolomic Profiling Implicates GSH Dysregulation in Early Experimental Graft versus Host Disease (GVHD)
Cited by: 19
Author(s): Jung Hee Suh, Bindu Kanathezhath, Swapna Shenvi, Hua Guo, Alicia Y. Zhou, Anureet Tiwana, Frans A. Kuypers, Bruce N. Ames, Mark C. Walters
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0004017
Global Expression Profiling in Atopic Eczema Reveals Reciprocal Expression of Inflammatory and Lipid Genes
Cited by: 77
Author(s): Annika Sääf, Maria Tengvall-Linder, Howard Y. Chang, Adam S. Adler, Carl-Fredrik Wahlgren, Annika Scheynius, Magnus Nordenskjöld, Maria Bradley
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0031180
Spatial Intuition in Elementary Arithmetic: A Neurocomputational Account
Cited by: 35
Author(s): Qi Chen, Tom Verguts
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0147507
Adenoviral Mediated Expression of BMP2 by Bone Marrow Stromal Cells Cultured in 3D Copolymer Scaffolds Enhances Bone Formation
Cited by: 13
Author(s): Sunita Sharma, Dipak Sapkota, Ying Xue, Yang Sun, Anna Finne‐Wistrand, Ove Bruland, Kamal Mustafa
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0029965
Multidimensional Characterization and Differentiation of Neurons in the Anteroventral Cochlear Nucleus
Cited by: 32
Author(s): Marei Typlt, Bernhard Englitz, Mandy Sonntag, Susanne Dehmel, Cornelia Kopp-Scheinpflug, Rudolf Ruebsamen
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0250924
The aesthetic experience of critical art: The effects of the context of an art gallery and the way of providing curatorial information
Cited by: 7
Author(s): Magdalena Szubielska, Kamil K. Imbir
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0076360
Targeted Exome Sequencing Integrated with Clinicopathological Information Reveals Novel and Rare Mutations in Atypical, Suspected and Unknown Cases of Alport Syndrome or Proteinuria
Cited by: 59
Author(s): Rajshekhar Chatterjee, Mary Hoffman, Paul Cliften, Surya V. Seshan, Helen Liapis, Sanjay Jain
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0046755
Uterine NK Cells Are Critical in Shaping DC Immunogenic Functions Compatible with Pregnancy Progression
Cited by: 45
Author(s): Irene González, Gabriela Barrientos, Nancy Freitag, Teresa Otto, Victor L. Thijssen, Petra Moschansky, Petra von Kwiatkowski, Burghard F. Klapp, Elke Winterhager, Stefan Bauersachs, Sandra M. Blois
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0015884
Phosphatidylserine Increases IKBKAP Levels in Familial Dysautonomia Cells
Cited by: 39
Author(s): Hadas Keren, Maya Donyo, David Zeevi, Channa Maayan, Tal Pupko, Gil Ast
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0065948
Global Transcriptomic Analysis of Human Neuroblastoma Cells in Response to Enterovirus Type 71 Infection
Cited by: 27
Author(s): Lijuan Xu, Tao Jiang, Fujun Zhang, Jianfeng Han, Juan Liu, Hui Zhao, Xiaofeng Li, Liu Ruiju, Yong-Qiang Deng, Xiaoyan Wu, Shun-Ya Zhu, E-De Qin, Cheng‐Feng Qin
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0160992
Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients
Cited by: 13
Author(s): Kiatichai Faksri, Jun Tan, Areeya Disratthakit, Eryu Xia, Therdsak Prammananan, Prapat Suriyaphol, Chiea‐Chuen Khor, Yik-Ying Teo, Rick Twee‐Hee Ong, Angkana Chaiprasert
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0049865
An Attempt at a Molecular Prediction of Metastasis in Patients with Primary Cutaneous Melanoma
Cited by: 13
Author(s): Melanie Gschaider, Friederike Neumann, Bettina Peters, F. Lenz, Michael Cibena, Malgorzata Goiser, Ingrid Wolf, Joerg Wenzel, Cornelia Mauch, Wolfgang Schreiner, Stephan N. Wagner
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0052973
Multi-Analyte Network Markers for Tumor Prognosis
Cited by: 21
Author(s): Jong-Kwang Kim, Long Gao, Kai Tan
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0199979
Bank1 and NF-kappaB as key regulators in anti-nucleolar antibody development
Cited by: 7
Author(s): Hammoudi Alkaissi, Said Havarinasab, Jesper Bo Nielsen, Peter Söderkvist, Per Hultman
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0013073
Potential Tumor Suppressor Role for the c-Myb Oncogene in Luminal Breast Cancer
Cited by: 40
Author(s): Aaron R. Thorner, Joel S. Parker, Katherine A. Hoadley, Charles M. Perou
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0001502
The Enduring Hypoxic Response of Mycobacterium tuberculosis
Cited by: 419
Author(s): Tige R. Rustad, Maria I. Harrell, Reiling Liao, David R. Sherman
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0182588
HspB5 correlates with poor prognosis in colorectal cancer and prompts epithelial-mesenchymal transition through ERK signaling
Cited by: 18
Author(s): Qinghua Li, Yanlan Wang, Yuexing Lai, Ping Xu, Zhiwen Yang
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0139542
Pathos & Ethos: Emotions and Willingness to Pay for Tobacco Products
Cited by: 14
Author(s): Francesco Bogliacino, Cristiano Codagnone, Giuseppe Veltri, Amitav Chakravarti, Pietro Ortoleva, George Gaskell, Andriy Ivchenko, Francisco Lupiáñez-Villanueva, Francesco Mureddu, Caroline Rudisill
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0121887
Catecholamines Promote Actinobacillus pleuropneumoniae Growth by Regulating Iron Metabolism
Cited by: 14
Author(s): Lü Li, Zhaohui Chen, Weicheng Bei, Zhipeng Su, Qi Huang, Liang Zhang, Huanchun Chen, Rui Zhou
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0254940
Sports ingroup love does not make me like the sponsor’s beverage but gets me buying it
Cited by: 0
Author(s): Sara Franco, Ana María Abreu, Rui Biscaia, Sandra Gama
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0114515
Meet OLAF, a Good Friend of the IAPS! The Open Library of Affective Foods: A Tool to Investigate the Emotional Impact of Food in Adolescents
Cited by: 44
Author(s): Laura Miccoli, R. Delgado, Sonia Rodríguez‐Ruiz, Pedro Guerra, Eduardo García-Mármol, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0046247
Selecting Biological Meaningful Environmental Dimensions of Low Discrepancy among Ranges to Predict Potential Distribution of Bean Plataspid Invasion
Cited by: 16
Author(s): Gengping Zhu, Matthew J. Petersen, Wenjun Bu
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0113925
Insights into Molecular Features of Venerupis decussata Oocytes: A Microarray-Based Study
Cited by: 5
Author(s): Marianna Pauletto, Massimo Milan, Joana Sousa, Arnaud Huvet, Sandra Joaquim, Domitília Matias, Alexandra Leitão, Tomaso Patarnello, Luca Bargelloni
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0064963
Elevational Distribution and Conservation Biogeography of Phanaeine Dung Beetles (Coleoptera: Scarabaeinae) in Bolivia
Cited by: 38
Author(s): Sebastián K. Herzog, A. Caroli Hamel‐Leigue, Trond H. Larsen, Darren J. Mann, Rodrigo W. Soria-Auza, Bruce D. Gill, W. D. Edmonds, Sacha Spector
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0027027
Testing the Water–Energy Theory on American Palms (Arecaceae) Using Geographically Weighted Regression
Cited by: 32
Author(s): Wolf L. Eiserhardt, Stine Bjorholm, Jens‐Christian Svenning, Thiago F. Rangel, Henrik Balslev
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0043571
Using Activity-Related Behavioural Features towards More Effective Automatic Stress Detection
Cited by: 68
Author(s): Dimitrios Giakoumis, Anastasios Drosou, Pietro Cipresso, Dimitrios Tzovaras, George Hassapis, Andrea Gaggioli, Giuseppe Riva
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0075012
Differentially Expressed MicroRNAs in Chondrocytes from Distinct Regions of Developing Human Cartilage
Cited by: 44
Author(s): Audrey McAlinden, Nobish Varghese, Louisa Wirthlin, Li‐Wei Chang
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0201784
Genetic parameters and quantitative trait loci analysis associated with body size and timing at metamorphosis into glass eels in captive-bred Japanese eels (Anguilla japonica)
Cited by: 9
Author(s): Kazuharu Nomura, Atushi Fujiwara, Yoshiaki Iwasaki, Issei Nishiki, Aiko Matsuura, Akiyuki Ozaki, Ryusuke Sudo, Hideki Tanaka
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0010776
In Vivo Identification of Solar Radiation-Responsive Gene Network: Role of the p38 Stress-Dependent Kinase
Cited by: 12
Author(s): Nicolas Mouchet, H. Adamski, R. Bouvet, Sébastien Corre, Yann Courbebaisse, Éric Watier, Jean Mosser, Christophe Chesné, Marie‐Dominique Galibert
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0005805
Gene Expression in Peripheral Blood Leukocytes in Monozygotic Twins Discordant for Chronic Fatigue: No Evidence of a Biomarker
Cited by: 24
Author(s): Andrea Byrnes, Andreas Jacks, Karin Dahlman-Wright, Birgitta Evengård, Fred A. Wright, Nancy L. Pedersen, Patrick F. Sullivan
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0015590
Olfactory Stem Cells, a New Cellular Model for Studying Molecular Mechanisms Underlying Familial Dysautonomia
Cited by: 45
Author(s): Nathalie Boone, Béatrice Loriod, Aurélie Bergon, Oualid Sbai, Christine Formisano-Tréziny, Jean Gabert, Michel Khrestchatisky, Catherine Nguyen, François Féron, Felicia B. Axelrod, El Chérif Ibrahim
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0020557
Predicting Protein Folds with Fold-Specific PSSM Libraries
Cited by: 8
Author(s): Young Ki Hong, Sree V. Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian B. van Rossum, Randen L. Patterson
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0065319
The Dynamics of Soybean Leaf and Shoot Apical Meristem Transcriptome Undergoing Floral Initiation Process
Cited by: 42
Author(s): Chui Eng Wong, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0170245
Weakening self-control biases the emotional evaluation of appetitive cues
Cited by: 7
Author(s): Christian D. Wiesner, Christoph Lindner
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0057172
Autophagy and Cellular Senescence Mediated by Sox2 Suppress Malignancy of Cancer Cells
Cited by: 43
Author(s): Yong‐Yeon Cho, Dong Joon Kim, Hye Suk Lee, Chul Ho Jeong, Eun Jin Cho, Myong Ok Kim, Sun‐Sig Byun, Kun Yeong Lee, Ke Yao, Andria Carper, Alyssa Langfald, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0061296
A Beamformer Analysis of MEG Data Reveals Frontal Generators of the Musically Elicited Mismatch Negativity
Cited by: 30
Author(s): Claudia Lappe, Olaf Steinsträter, Christo Pantev
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0007856
Correlating Global Gene Regulation to Angiogenesis in the Developing Chick Extra-Embryonic Vascular System
Cited by: 60
Author(s): Sophie Javerzat, Mélanie Franco, John Herbert, N. Platonova, Anne-Lise Peille, Véronique Pantesco, John De Vos, Saïd Assou, Roy Bicknell, Andréas Bikfalvi, Martin Hagedorn
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0059636
Androgen Inhibits Abdominal Fat Accumulation and Negatively Regulates the PCK1 Gene in Male Chickens
Cited by: 25
Author(s): Jinlin Duan, Fan Su, Yi Shao, Junying Li, Ling Yao, Ke Teng, Hongwei Li, Changxin Wu
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0018613
Differential Glucose-Regulation of MicroRNAs in Pancreatic Islets of Non-Obese Type 2 Diabetes Model Goto-Kakizaki Rat
Cited by: 160
Author(s): Jonathan L.S. Esguerra, Caroline Bolmeson, Corrado Cilio, Lena Eliasson
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0006213
Involvement of the Post-Transcriptional Regulator Hfq in Yersinia pestis Virulence
Cited by: 90
Author(s): Jing Geng, Yajun Song, Lei Yang, Yanyan Feng, Yefeng Qiu, Gang Li, Jingyu Guo, Yujing Bi, Yi Qu, Wang Wang, Xiaoyi Wang, Zhaobiao Guo, Ruifu Yang, Yanping Han
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0082006
ROS Stress Resets Circadian Clocks to Coordinate Pro-Survival Signals
Cited by: 81
Author(s): Teruya Tamaru, Mitsuru Hattori, Yasuharu Ninomiya, Genki Kawamura, Guillaume Varès, Kousuke Honda, Durga Prasad Mishra, Bing Wang, Ivor J. Benjamin, Paolo Sassone‐Corsi, Toshio Ozawa, Ken Takamatsu
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0030840
Progesterone Inhibits Epithelial-to-Mesenchymal Transition in Endometrial Cancer
Cited by: 63
Author(s): Paul H. van der Horst, Yong-Yi Wang, Ingrid Vandenput, Liesbeth C. Kühne, Patricia C. Ewing, Wilfred F. J. van IJcken, Marten van der Zee, Frédéric Amant, Curt W. Burger, Leen J. Blok
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0008189
Integrative Discovery of Epigenetically Derepressed Cancer Testis Antigens in NSCLC
Cited by: 64
Author(s): Chad A. Glazer, Ian Smith, Michael F. Ochs, Shahnaz Begum, William H. Westra, Steven S. Chang, Wenyue Sun, Sheetal Bhan, Zubair Khan, Steven A. Ahrendt, Joseph A. Califano
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0109611
The Long-HER Study: Clinical and Molecular Analysis of Patients with HER2+ Advanced Breast Cancer Who Become Long-Term Survivors with Trastuzumab-Based Therapy
Cited by: 23
Author(s): Angelo Gámez‐Pozo, Ramón María Pérez Carrión, Luis Manso, Carmen Crespo, C. Mendiola, Rocío López-Vacas, Julia Berges-Soria, Isabel Álvarez López, Mireia Margelı́, Juan Lucas Bayo Calero, Xavier Farré, Ana Santaballa, Eva Ciruelos, Renata Afonso, Juan Lao, G. Catalán, J Gallego, José Miramón López, F.J. Salvador Bofill, Manuel Ruíz-Borrego, Enrique Espinosa, Juan Ángel Fresno Vara, Pilar Zamora
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0031246
Potential Geographic Distribution of Brown Marmorated Stink Bug Invasion (Halyomorpha halys)
Cited by: 151
Author(s): Gengping Zhu, Wenjun Bu, Yubao Gao, Guoqing Liu
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0043334
Spatial Genetic Structure in Natural Populations of Phragmites australis in a Mosaic of Saline Habitats in the Yellow River Delta, China
Cited by: 20
Author(s): Lexuan Gao, Shaoqing Tang, Liqiong Zhuge, Ming Nie, Zhu Zhu, Bo Li, Ji Hyun Yang
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0098069
Switch in FOXA1 Status Associates with Endometrial Cancer Progression
Cited by: 22
Author(s): Ingvild L. Tangen, Camilla Krakstad, Mari K. Halle, Henrica M.J. Werner, Anne Margrete Øyan, Kanthida Kusonmano, Kjell Petersen, Karl‐Henning Kalland, Lars A. Akslen, Jone Trovik, Antoni Hurtado, Helga B. Salvesen
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0022730
Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1)
Cited by: 48
Author(s): Ankit Gupta, Pruthvi Nagilla, Hai-Son Le, Coulton Bunney, Courtney Zych, Anbupalam Thalamuthu, Ziv Bar‐Joseph, Sinnakaruppan Mathavan, Velpandi Ayyavoo
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0006527
Apoptosis of CD4+CD25high T Cells in Type 1 Diabetes May Be Partially Mediated by IL-2 Deprivation
Cited by: 74
Author(s): Parthav Jailwala, Jill Waukau, Sanja Glišić, Swapan Kumar Jana, S.J. Ehlenbach, Martin J. Hessner, Ramin Alemzadeh, Shigemi Matsuyama, Purushottam W. Laud, Xujing Wang, Soumitra Ghosh
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0111589
Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae
Cited by: 4
Author(s): Sandra Mota, Neide Vieira, Sónia Barbosa, Thierry Delaveau, Claire Torchet, Agnès Le Saux, Mathilde Garcia, Ana Sofia Pereira, Sophie Lemoine, Fanny Coulpier, Xavier Darzacq, Lionel Bénard, Margarida Casal, Frédéric Devaux, Sandra Paiva
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0025195
Does Lateral Transmission Obscure Inheritance in Hunter-Gatherer Languages?
Cited by: 69
Author(s): Claire Bowern, Patience Epps, Russell D. Gray, Jane H. Hill, Keith Hunley, Patrick McConvell, Jason Zentz
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0070096
Downregulation of Steroid Receptor Coactivator-2 Modulates Estrogen-Responsive Genes and Stimulates Proliferation of MCF-7 Breast Cancer Cells
Cited by: 23
Author(s): Ingvild S. Fenne, Thomas Helland, Marianne Hauglid Flågeng, Simon N. Dankel, Gunnar Mellgren
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0045839
Genome-Wide Expression Profiling Identifies Type 1 Interferon Response Pathways in Active Tuberculosis
Cited by: 193
Author(s): Tom H. M. Ottenhoff, Ranjeeta Hari Dass, Ninghan Yang, Mingzi M. Zhang, Hazel E. E. Wong, Edhyana Sahiratmadja, Chiea‐Chuen Khor, Bachti Alisjahbana, Reinout van Crevel, Sangkot Marzuki, Mark Seielstad, Esther van de Vosse, Martin L. Hibberd
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0076459
A SNP Based High-Density Linkage Map of Apis cerana Reveals a High Recombination Rate Similar to Apis mellifera
Cited by: 15
Author(s): Yuan Shi, Liang Sun, Huang Zhi, Xiao Wu, Yangyang Zhu, Hua Jun Zheng, Zhi Zeng
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0062909
Complex Genetic Architecture of Cardiac Disease in a Wild Type Inbred Strain of Drosophila melanogaster
Cited by: 5
Author(s): Zhi Zhang, Benjamin Hsieh, Amy R. Poe, Julie Anderson, Karen Ocorr, Greg Gibson, Rolf Bodmer
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0201742
Glial responses during epileptogenesis in Mus musculus point to potential therapeutic targets
Cited by: 19
Author(s): Georgia Kalozoumi, Olga V. Kel-Margoulis, Elizabeth Vafiadaki, David Greenberg, Hélène Bernard, Hermona Soreq, Antoine Depaulis, Despina Sanoudou
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0185281
Identification of a novel frameshift mutation in the ILDR1 gene in a UAE family, mutations review and phenotype genotype correlation
Cited by: 6
Author(s): Abdelaziz Tlili, Abdullah Fahd Al Mutery, Mona Mahfood, Walaa Kamal Eldin Mohamed, Khalid Bajou
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0000116
MiRNA-Directed Regulation of VEGF and Other Angiogenic Factors under Hypoxia
Cited by: 609
Author(s): Hua Zhong, Qing Lv, Michael Fraser, Chung-Kwun Amy Wong, Guoping Cai, Dayong Gu, Yanhong Ji, Chen Zhao, Jifeng Wang, Burton B. Yang, Yaou Zhang
Software Mentions: 1
Published: almost 18 years ago
10.1371/journal.pone.0197333
Automated size selection for short cell-free DNA fragments enriches for circulating tumor DNA and improves error correction during next generation sequencing
Cited by: 52
Author(s): Sabine Hellwig, David A. Nix, Keith M. Gligorich, John O’Shea, Alun Thomas, Carrie L. Fuertes, Preetida J. Bhetariya, Gábor Marth, Mary P. Bronner, Hunter R. Underhill
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0182272
Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data
Cited by: 19
Author(s): Bo Young Kim, Jung Hoon Park, Hye Yeong Jo, Soo Kyung Koo, Mi-Hyun Park
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0151224
Generation of Antigen Microarrays to Screen for Autoantibodies in Heart Failure and Heart Transplantation
Cited by: 16
Author(s): Andrzej Chruscinski, Flora Huang, Albert Nguyen, Jocelyn Lioe, Laura C. Tumiati, Stella Kozuszko, Kathryn Tinckam, Vivek Rao, Shannon Dunn, Michael A. Persinger, Gary Levy, Heather J. Ross
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0005212
The Yeast PNC1 Longevity Gene Is Up-Regulated by mRNA Mistranslation
Cited by: 19
Author(s): Raquel M. Silva, Iven C. N. Duarte, João A. Paredes, Tatiana Lima-Costa, Michel Perrot, Hélian Boucherie, Brian J. Goodfellow, Ana Catarina Gomes, Denisa D. Mateus, Gabriela Moura, Manuel A. S. Santos
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0223881
Real vs. immersive-virtual emotional experience: Analysis of psycho-physiological patterns in a free exploration of an art museum
Cited by: 46
Author(s): Javier Marín‐Morales, Juan Luis Higuera-Trujillo, Alberto Greco, Jaime Guixeres, Carmen Llinares, Claudio Gentili, Enzo Pasquale Scilingo, Mariano Alcañíz, Gaetano Valenza
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0115241
Functional and Evolutionary Significance of Human MicroRNA Seed Region Mutations
Cited by: 35
Author(s): Christopher G. Hill, Neda Jabbari, Lilya V. Matyunina, John F. McDonald
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0034185
Deficiency in Nucleotide Excision Repair Family Gene Activity, Especially ERCC3, Is Associated with Non-Pigmented Hair Fiber Growth
Cited by: 7
Author(s): Man Yu, Robert H. Bell, Maggie M. Ho, Gph Leung, Anne Haegert, Nicholas Carr, Jerry Shapiro, Kevin J. McElwee
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0004706
In Silico Simulation of Corticosteroids Effect on an NFkB- Dependent Physicochemical Model of Systemic Inflammation
Cited by: 63
Author(s): Panagiota T. Foteinou, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0040476
Molecular Characterization of Circulating Tumor Cells in Human Metastatic Colorectal Cancer
Cited by: 78
Author(s): Jorge Barbazán, Lorena Alonso-Alconada, Laura Muinelo‐Romay, María Vieito, Alicia Abalo, Marta Alonso-Nocelo, Sonia Candamio, Elena Gallardo, B. Díaz Fernández, Ihab Abdulkader, María de los Ángeles Casares, Antonio Gómez-Tato, Rafael López‐López, Miguel Abal
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0058471
The miR-183/Taok1 Target Pair Is Implicated in Cochlear Responses to Acoustic Trauma
Cited by: 34
Author(s): Minal Patel, Qunfeng Cai, Dalian Ding, Richard Salvi, Zihua Hu, Bo Hu
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0071989
Functional Comparison between Genes Dysregulated in Ulcerative Colitis and Colorectal Carcinoma
Cited by: 7
Author(s): Wenyuan Zhao, Lishuang Qi, Qing Yao, Hongwei Wang, Beibei Chen, Ruiping Wang, Yunyan Gu, Chunyang Liu, Chenguang Wang, Zheng Guo
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0235259
Recovery rate and its predictors among children with severe acute malnutrition in Addis Ababa, Ethiopia: A retrospective cohort study
Cited by: 4
Author(s): Zebenay Workneh Bitew, Animut Alebel, Teshager Worku, Ayinalem Alemu
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0009189
A Dynamic Model for Stem Cell Homeostasis and Patterning in Arabidopsis Meristems
Cited by: 39
Author(s): Tim Hohm, Eckart Zitzler, Rüdiger Simon
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0058235
Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
Cited by: 74
Author(s): Midori Kato‐Maeda, Christine Ho, Ben Passarelli, Niaz Banaei, Jennifer Grinsdale, Laura L Flores, J.P. Anderson, Megan Murray, Graham Rose, L. Masae Kawamura, Nader Pourmand, Muhammad Tariq, Sébastien Gagneux, Philip C. Hopewell
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0155901
Validation of Novel Biomarkers for Prostate Cancer Progression by the Combination of Bioinformatics, Clinical and Functional Studies
Cited by: 40
Author(s): Saeid Alinezhad, Riina Minna Väänänen, Jesse Mattsson, Yifeng Li, Terhi Tallgrén, Natalia Tong Ochoa, Anders Bjartell, Malin Åkerfelt, Pekka Taimen, Peter J. Boström, Kim Pettersson, Matthias Nees
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0008136
Gender Differences in a Drosophila Transcriptomic Model of Chronic Pentylenetetrazole Induced Behavioral Deficit
Cited by: 7
Author(s): Abhay Sharma, Farhan Mohammad, Priyanka Singh
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0059722
High-Throughput Carrier Screening Using TaqMan Allelic Discrimination
Cited by: 25
Author(s): Anastasia Fedick, Jing Su, Chaim Jalas, Lesley E. Northrop, Batsal Devkota, Josef Ekstein, Nathan R. Treff
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0074140
Sporadic Colorectal Cancer Development Shows Rejuvenescence Regarding Epithelial Proliferation and Apoptosis
Cited by: 10
Author(s): Katalin Leiszter, Orsolya Galamb, Ferenc Sípos, Tibor Krenács, Gábor Veres, Barnabás Wichmann, Alexandra Kalmár, Árpád V. Patai, Kinga Tóth, Gábor Valcz, Béla Molnár, Zsolt Tulassay
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0219574
On the trail of Scandinavia’s early metallurgy: Provenance, transfer and mixing
Cited by: 26
Author(s): H. Nørgaard, Ernst Pernicka, Helle Vandkilde
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0129776
Modulation of PICALM Levels Perturbs Cellular Cholesterol Homeostasis
Cited by: 10
Author(s): Jacob L. Mercer, Joseph P. Argus, Donna Crabtree, Melissa M. Keenan, Moses Q. Wilks, Jen‐Tsan Chi, Steven J. Bensinger, Catherine Lavau, Daniel S. Wechsler
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0044583
Analysis of the Transcriptomes Downstream of Eyeless and the Hedgehog, Decapentaplegic and Notch Signaling Pathways in Drosophila melanogaster
Cited by: 11
Author(s): Landry Nfonsam, Carlos Cano, Joann Mudge, Faye Schilkey, Jennifer Curtiss
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0080114
GSTM1 Gene Expression Correlates to Leiomyoma Volume Regression in Response to Mifepristone Treatment
Cited by: 21
Author(s): Mikael Engman, Suby Jo Varghese, Kristina Lagerstedt‐Robinson, Helena Malmgren, Anna Hammarsjö, Birgitta Byström, Parameswaran Grace Lalitkumar, Kristina Gemzell‐Danielsson
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0029686
Reproducibility and Concordance of Differential DNA Methylation and Gene Expression in Cancer
Cited by: 20
Author(s): Chen Yao, Hongdong Li, Xiaopei Shen, Zheng He, Lang He, Zheng Guo
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0016703
A PXR-Mediated Negative Feedback Loop Attenuates the Expression of CYP3A in Response to the PXR Agonist Pregnenalone-16α-Carbonitrile
Cited by: 25
Author(s): Ian Bailey, G. Gordon Gibson, Kathryn E. Plant, Mark Graham, Nick Plant
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0161922
Protein Profiling of Bladder Urothelial Cell Carcinoma
Cited by: 6
Author(s): Jinghai Hu, Fei Ye, Miao Cui, Peng Lee, Chengguo Wei, Yuanyuan Hao, Xiaoqing Wang, Yanbo Wang, Zhihua Lu, Matthew D. Galsky, Russell McBride, Li Wang, Dongwen Wang, Carlos Cordon‐Cardo, Wang Chun-xi, David Y. Zhang
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0219615
Presenting new stimuli to study emotion: Development and validation of the Objects-on-Hands Picture Database
Cited by: 4
Author(s): Natália Lisandra Fernandes, Josefa N. S. Pandeirada, James S. Nairne
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0087502
AtWuschel Promotes Formation of the Embryogenic Callus in Gossypium hirsutum
Cited by: 48
Author(s): Wu Zheng, Xueyan Zhang, Zuoren Yang, Jiahe Wu, Fenglian Li, Lanling Duan, Chuanliang Liu, Lili Lu, Chaojun Zhang, Fuguang Li
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0244697
Let’s not be indifferent about robots: Neutral ratings on bipolar measures mask ambivalence in attitudes towards robots
Cited by: 9
Author(s): Julia G. Stapels, Friederike Anne Eyssel
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0004904
Comparative Transcriptional Profiling of Bacillus cereus Sensu Lato Strains during Growth in CO2-Bicarbonate and Aerobic Atmospheres
Cited by: 35
Author(s): Karla D. Passalacqua, Anjana Varadarajan, Benjamin Byrd, Nicholas H. Bergman
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0127028
Systemic Monocytic-MDSCs Are Generated from Monocytes and Correlate with Disease Progression in Breast Cancer Patients
Cited by: 111
Author(s): Caroline Bergenfelz, Anna-Maria Larsson, Kristoffer von Stedingk, Sofia K. Gruvberger-Saal, Kristina Aaltonen, Sara Jansson, Helena Jernström, Helena Janols, Marlene Wullt, Anders Bredberg, Lisa Rydén, Karin Leandersson
Software Mentions: 1
Published: over 9 years ago