10.1186/ar3555

Plasma proteins present in osteoarthritic synovial fluid can stimulate cytokine production via Toll-like receptor 4
Cited by: 254
Author(s): Dong Hyun Sohn, Jeremy Sokolove, Orr Sharpe, Jennifer C. Erhart, Piyanka Chandra, Lauren J. Lahey, Tamsin M. Lindström, Inyong Hwang, Katherine A. Boyer, Thomas P. Andriacchi, William H. Robinson
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0060742

Land Use Explains the Distribution of Threatened New World Amphibians Better than Climate
Cited by: 28
Author(s): Fernanda Thiesen Brum, Larissa Oliveira Gonçalves, Laura Cappelatti, Marcos B. Carlucci, Vanderlei J. Debastiani, Elisa Viana Salengue, Guilherme Dubal dos Santos Seger, Camila Both, Jorge Bernardo-Silva, Rafael Loyola, Leandro da Silva Duarte
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0104164

Molecular Pathogenesis of Post-Transplant Acute Kidney Injury: Assessment of Whole-Genome mRNA and MiRNA Profiles
Cited by: 60
Author(s): Julia Wilflingseder, Judith Sunzenauer, É. Toronyi, Andreas Heinzel, Alexander Kainz, Bernd Mayer, Paul Perco, Gábor Telkes, Róbert Langer, Rainer Oberbauer
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0060202

Tissue-Specific Transcriptomic Profiling of Sorghum propinquum using a Rice Genome Array
Cited by: 6
Author(s): Ting Zhang, Xiuqin Zhao, Liying Huang, Xiaoyue Liu, Yuan Zong, Linghua Zhu, Daichang Yang, Binying Fu
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0225426

Channel-spatial attention network for fewshot classification
Cited by: 11
Author(s): Yan Zhang, Min Fang, Nian Wang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0252376

Shifting networks and mixing metals: Changing metal trade routes to Scandinavia correlate with Neolithic and Bronze Age transformations
Cited by: 16
Author(s): H. Nørgaard, Ernst Pernicka, Helle Vandkilde
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-8-296

cis sequence effects on gene expression
Cited by: 8
Author(s): Andrew W. Bergen, Andrea Baccarelli, Timothy K. McDaniel, Kenneth M. Kuhn, Ruth M. Pfeiffer, Jerry Kakol, Patrick K. Bender, Kevin B. Jacobs, Bernice Packer, Stephen J. Chanock, Meredith Yeager
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0238887

The DROOPING LEAF (DR) gene encoding GDSL esterase is involved in silica deposition in rice (Oryza sativa L.)
Cited by: 6
Author(s): Yoye Yu, Mi-Ok Woo, Rihua Piao, Hee‐Jong Koh
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0070352

Role of CTLA4 in the Proliferation and Survival of Chronic Lymphocytic Leukemia
Cited by: 37
Author(s): Amit Mittal, Nagendra K. Chaturvedi, Rae A. Rohlfsen, P. C. Sen Gupta, Avadhut D. Joshi, Ganapati V. Hegde, R. Gregory Bociek, Shantaram S. Joshi
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0012028

Determining Frequent Patterns of Copy Number Alterations in Cancer
Cited by: 10
Author(s): Franck Rapaport, Christina C. Leslie
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0117001

Tolerance Associated Gene Expression following Allogeneic Hematopoietic Cell Transplantation
Cited by: 9
Author(s): Joseph Pidala, Gregory Bloom, Steven Eschrich, Minnie M. Sarwal, Steve Enkemann, Brian C. Betts, Francisca Beato, Sean Yoder, Claudio Anasetti
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0017035

Variability and Diversity of Nasopharyngeal Microbiota in Children: A Metagenomic Analysis
Cited by: 372
Author(s): Debby Bogaert, Bart J. F. Keijser, Susan M. Huse, John W. A. Rossen, Reinier H. Veenhoven, Elske van Gils, Jacob P. Bruin, R.C. Montijn, Marc J. M. Bonten, Elisabeth A. M. Sanders
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0096305

Lipid Profiling and Transcriptomic Analysis Reveals a Functional Interplay between Estradiol and Growth Hormone in Liver
Cited by: 11
Author(s): Leandro Fernández-Pérez, Ruymán Santana-Farré, Mercedes de Mirecki-Garrido, Irma García, Borja Guerra, Carlos Mateo-Díaz, Diego Iglesias-Gato, J. C. Díaz-Chico, Amilcar Flores‐Morales, Mario Dı́az
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0002937

Improved Elucidation of Biological Processes Linked to Diabetic Nephropathy by Single Probe-Based Microarray Data Analysis
Cited by: 72
Author(s): Clemens D. Cohen, Maja T. Lindenmeyer, Felix Eichinger, Alexander Hahn, Martin Seifert, Anton G. Moll, Holger Schmid, Éva Kiss, Elisabeth F. Gröne, Hermann–Josef Gröne, Matthias Kretzler, Thomás Werner, Peter J. Nelson
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0111872

Metabolomic Profiling in Cattle Experimentally Infected with Mycobacterium avium subsp. paratuberculosis
Cited by: 44
Author(s): Jeroen De Buck, Rustem Shaykhutdinov, Herman W. Barkema, Hans J. Vogel
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0089262

A Core Invasiveness Gene Signature Reflects Epithelial-to-Mesenchymal Transition but Not Metastatic Potential in Breast Cancer Cell Lines and Tissue Samples
Cited by: 11
Author(s): Melike Marsan, Gert Van den Eynden, Ridha Limame, Patrick Neven, Jan Hauspy, Peter van Dam, Ignace Vergote, Luc Dirix, Peter Vermeulen, Steven J. Van Laere
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0071059

Meta-Analysis of Genetic Programs between Idiopathic Pulmonary Fibrosis and Sarcoidosis
Cited by: 18
Author(s): Liubing Dong, Caijuan Huan, Ting Xie, Jiurong Liang, Jun Wang, Huaping Dai, Chen Wang, Dianhua Jiang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0065097

Distinct Transcriptional Networks in Quiescent Myoblasts: A Role for Wnt Signaling in Reversible vs. Irreversible Arrest
Cited by: 37
Author(s): Sindhu Subramaniam, Prethish Sreenivas, Sirisha Cheedipudi, Vatrapu Rami Reddy, L.S. Shashidhara, Ravi Kumar Chilukoti, Madhavi B. Mylavarapu, Jyotsna Dhawan
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-12-419

SAMQA: error classification and validation of high-throughput sequenced read data
Cited by: 14
Author(s): Thomas Robinson, Sarah Killcoyne, Ryan Bressler, John P. Boyle
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0179920

Unique intrahepatic transcriptomics profiles discriminate the clinical phases of a chronic HBV infection
Cited by: 17
Author(s): Jun Hou, Willem Pieter Brouwer, Kim Kreefft, Lúcio Gama, Sarah L. Price, Harry L.A. Janssen, Pim J. French, Thomas Vanwolleghem, André Boonstra
Software Mentions: 1
Published: about 9 years ago

10.1186/ar1751

Cited by: 57
Author(s): Takahito Tsubaki, Norimasa Arita, Takuma Kawakami, Takayuki Shiratsuchi, Haruyasu Yamamoto, Nobuo Takubo, Kazuhito Yamada, Satoshi Nakata, Sachiko Yamamoto, Masato Nose
Software Mentions: 1
Published: over 21 years ago

10.1371/journal.pone.0245477

Relapse and post-discharge body composition of children treated for acute malnutrition using a simplified, combined protocol: A nested cohort from the ComPAS RCT
Cited by: 16
Author(s): Natasha Lelijveld, Eunice Musyoki, Susan Were Adongo, Amy Mayberry, Jonathan C. K. Wells, Charles Opondo, Marko Kerac, Jeanette Bailey
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0097681

Integration of mRNA Expression Profile, Copy Number Alterations, and microRNA Expression Levels in Breast Cancer to Improve Grade Definition
Cited by: 53
Author(s): Claudia Cava, Gloria Bertoli, M. Ripamonti, Giancarlo Mauri, Italo Zoppis, Pasquale Anthony Della Rosa, M.C. Gilardi, Isabella Castiglioni
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-10-456

Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid
Cited by: 72
Author(s): Gaël Le Trionnaire, Frédéric Francis, Stéphanie Jaubert-Possamai, Joël Bonhomme, Edwin De Pauw, Jean-Pierre Gauthier, Éric Haubruge, Fabrice Legeai, Nathalie Prunier-Leterme, Jean Simon, Sylvie Tanguy, Denis Tagu
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0007826

MicroRNA Patterns Associated with Clinical Prognostic Parameters and CNS Relapse Prediction in Pediatric Acute Leukemia
Cited by: 178
Author(s): Hua Zhang, Xue-Qun Luo, Peng Zhang, Libin Huang, Yusheng Zheng, Jun Wu, Hui Zhou, Liang‐Hu Qu, Ling Xu, Yue‐Qin Chen
Software Mentions: 1
Published: over 16 years ago

10.1113/jphysiol.2014.285577

Statin myalgia is not associated with reduced muscle strength, mass or protein turnover in older male volunteers, but is allied with a slowing of time to peak power output, insulin resistance and differential muscle mRNA expression
Cited by: 36
Author(s): Joanne Mallinson, Kanagaraj Marimuthu, Andrew J. Murton, Anna Selby, Kenneth Smith, Dumitru Constantin‐Teodosiu, Michael J. Rennie, Paul L. Greenhaff
Software Mentions: 1
Published: over 11 years ago

10.1186/s40101-016-0116-4

Positive emotion inducement modulates cardiovascular responses caused by mental work
Cited by: 6
Author(s): Xinxin Liu, Kazuma Ishimatsu, Midori Sotoyama, Kazuyuki Iwakiri
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0003390

Requirement of RIZ1 for Cancer Prevention by Methyl-Balanced Diet
Cited by: 25
Author(s): Wei Zhou, Sergio Alonso, Daisaku Takai, Shelly C. Lu, Fumiichiro Yamamoto, Manuel Perucho, Shi Huang
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0015378

DNA Copy Number Changes in Human Malignant Fibrous Histiocytomas by Array Comparative Genomic Hybridisation
Cited by: 12
Author(s): Stine H. Kresse, Hege O. Ohnstad, Bodil Bjerkehagen, Ola Myklebost, Leonardo A. Meza‐Zepeda
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0140310

Landscape of Targeted Anti-Cancer Drug Synergies in Melanoma Identifies a Novel BRAF-VEGFR/PDGFR Combination Treatment
Cited by: 34
Author(s): Adam Friedman, Arnaud Amzallag, Iulian Pruteanu-Malinici, Subash Baniya, Zachary A. Cooper, Adriano Piris, Leeza Hargreaves, Vivien Igras, Dennie T. Frederick, Donald P. Lawrence, Daniel A. Haber, Keith T. Flaherty, Jennifer A. Wargo, Sridhar Ramaswamy, Cyril H. Benes, David E. Fisher
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0144310

Genomic Epidemiology of an Endoscope-Associated Outbreak of Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae
Cited by: 64
Author(s): Jane W. Marsh, Mary G. Krauland, Jemma Nelson, Jessica L. Schlackman, Anthony M. Brooks, A. William Pasculle, Kathleen A. Shutt, Yohei Doi, Ashley Querry, Carlene A. Muto, Lee H. Harrison
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0095272

Parallel mRNA and MicroRNA Profiling of HEV71-Infected Human Neuroblastoma Cells Reveal the Up-Regulation of miR-1246 in Association with DLG3 Repression
Cited by: 34
Author(s): Lijuan Xu, Tao Jiang, Wei Zhao, Jianfeng Han, Juan Liu, Yong-Qiang Deng, Shun-Ya Zhu, Yuexiang Li, Qing-Gong Nian, Yu Zhang, Xiaoyan Wu, E-De Qin, Cheng‐Feng Qin
Software Mentions: 1
Published: over 12 years ago

10.1128/mBio.00961-18

The Pseudomonas aeruginosa Complement of Lactate Dehydrogenases Enables Use of <scp>d</scp> - and <scp>l</scp> -Lactate and Metabolic Cross-Feeding
Cited by: 31
Author(s): Yu Cheng Lin, William Cole Cornell, Jeanyoung Jo, Alexa Price-Whelan, Lars E. P. Dietrich
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0007226

Skin Electroporation: Effects on Transgene Expression, DNA Persistence and Local Tissue Environment
Cited by: 124
Author(s): Anna-Karin Roos, Fredrik Eriksson, James A. Timmons, Josefine Gerhardt, Ulrika Nyman, Lindvi Gudmundsdotter, Andreas Bråve, Britta Wahrén, Pavel Pisa
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0013420

Transcriptome, Methylome and Genomic Variations Analysis of Ectopic Thyroid Glands
Cited by: 43
Author(s): Rasha Abu-Khudir, Jean Paquette, Anne Lefort, Frédérick Libert, Jean‐Pierre Chanoine, Gilbert Vassart, Johnny Deladoëy
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0082469

Is Content Really King? An Objective Analysis of the Public's Response to Medical Videos on YouTube
Cited by: 204
Author(s): Tejas Desai, Afreen Shariff, Dhingra Vibhu, Deeba Minhas, Megan Eure, Марк Давидович Кац
Software Mentions: 1
Published: over 12 years ago

10.1128/mBio.02733-18

<i>Cryptococcus deuterogattii</i> VGIIa Infection Associated with Travel to the Pacific Northwest Outbreak Region in an Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibody-Positive Patient in the United States
Cited by: 24
Author(s): Shelly Applen Clancey, Emily J. Ciccone, Marco A. Coelho, Joie Davis, Li Ding, Renée Betancourt, Samuel Glaubiger, Yueh Z. Lee, Steven M. Holland, Peter H. Gilligan, Jeffrey C. Sung, Joseph Heitman
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0211453

Improving interoceptive ability through the practice of power posing: A pilot study
Cited by: 21
Author(s): Felicitas Weineck, Matthias Messner, Gernot Hauke, Olga Pollatos
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-016-2873-1

Is genotyping of single isolates sufficient for population structure analysis of Pseudomonas aeruginosa in cystic fibrosis airways?
Cited by: 15
Author(s): Lea Mette Madsen Sommer, Rasmus Lykke Marvig, Adela M. Luján, Anna Koza, Tacjana Pressler, Søren Molin, Helle Krogh Johansen
Software Mentions: 1
Published: almost 10 years ago

10.1007/s10265-021-01253-z

Repatterning of the inflorescence meristem in Gerbera hybrida after wounding
Cited by: 1
Author(s): Teng Zhang, Feng Wang, Paula Elomaa
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0036499

Transcriptional Homeostasis of a Mangrove Species, Ceriops tagal, in Saline Environments, as Revealed by Microarray Analysis
Cited by: 21
Author(s): Liang Shan, Fang Lü, Renchao Zhou, Tian Tang, Shulin Deng, SuiSui Dong, Yelin Huang, Cairong Zhong, Suhua Shi
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0026952

Immune Response and Mitochondrial Metabolism Are Commonly Deregulated in DMD and Aging Skeletal Muscle
Cited by: 33
Author(s): Daniel Báron, Armelle Magot, Gérard Ramstein, Marja Steenman, Guy Fayet, Catherine Chevalier, Philippe Jourdon, Rémi Houlgatte, Frédérique Savagner, Yann Péreón
Software Mentions: 1
Published: over 14 years ago

10.1186/ar1990

Gene profiling in white blood cells predicts infliximab responsiveness in rheumatoid arthritis
Cited by: 132
Author(s): Thierry Lequerré, Anne-Christine Gauthier-Jauneau, Carine Bansard, Céline Derambure, Martine Hiron, Olivier Vittecoq, Maryvonne Daveau, O. Mejjad, A. Daragon, François Tron, Xavier Le Loët, Jean‐Philippe Salier
Software Mentions: 1
Published: over 20 years ago

10.1186/ar4609

Inflammatory expression profiles in monocyte-to-macrophage differentiation in patients with systemic lupus erythematosus and relationship with atherosclerosis
Cited by: 27
Author(s): Benjamin Korman, Chiang-Ching Huang, Carly Skamra, Peggy Wu, Renee E. Koessler, David Yao, Qi Huang, William Pearce, Kim Sutton-Tyrrell, George T. Kondos, Daniel Edmundowicz, Richard M. Pope, Rosalind Ramsey‐Goldman
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-7-289

Gene expression patterns that predict sensitivity to epidermal growth factor receptor tyrosine kinase inhibitors in lung cancer cell lines and human lung tumors
Cited by: 71
Author(s): Justin M. Balko, Anil Potti, Christopher P. Saunders, Arnold J. Stromberg, Eric B. Haura, Esther P. Black
Software Mentions: 1
Published: over 19 years ago

10.3390/cancers11071003

Identification of Withaferin A as a Potential Candidate for Anti-Cancer Therapy in Non-Small Cell Lung Cancer
Cited by: 37
Author(s): Jade H.M. Hsu, Peter Mu Hsin Chang, Tai Shan Cheng, Yi Chun Kuo, Alexander T.H. Wu, Thu-Ha Tran, Yusan Yang, Jing Ming Chen, Yu Chen Tsai, Yu‐Xia Chu, Tse-Hung Huang, Chi Ying F. Huang, Jin Mei Lai
Software Mentions: 1
Published: about 7 years ago

10.4172/jpb.1000308

Diagnostics for Statistical Variable Selection Methods for Prediction of Peptic Ulcer Disease in Helicobacter pylori Infection
Cited by: 4
Author(s): Huangxian Ju, Allan R. Brasier, Alexander Kurosky, Bo Xu, Victor E. Reyes, David Y. Graham
Software Mentions: 1
Published: over 12 years ago

10.1128/mSphereDirect.00271-17

Fungus Causing White-Nose Syndrome in Bats Accumulates Genetic Variability in North America with No Sign of Recombination
Cited by: 25
Author(s): Jigar Trivedi, Josianne Lachapelle, Karen J. Vanderwolf, Vikram Misra, Craig K. R. Willis, John M. Ratcliffe, Rob W. Ness, James B. Anderson, Linda M. Kohn
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13075-017-1360-7

Limited cutaneous systemic sclerosis skin demonstrates distinct molecular subsets separated by a cardiovascular development gene expression signature
Cited by: 13
Author(s): Emma Derrett-Smith, Viktor Martyanov, Cecilia Beatrice Chighizola, Pia Moinzadeh, Corrado Campochiaro, Korsa Khan, Tammara A. Wood, Pier Luigi Meroni, David Abraham, Voon H Ong, Robert Lafyatis, Michael L. Whitfield, Christopher P. Denton
Software Mentions: 1
Published: about 9 years ago

10.3390/cancers3032858

Prediction of Metastasis and Recurrence in Colorectal Cancer Based on Gene Expression Analysis: Ready for the Clinic?
Cited by: 21
Author(s): M. Shibayama, Matthias Maak, Ulrich Nitsche, Kengo Gotoh, Robert D. Rosenberg, Klaus‐Peter Janssen
Software Mentions: 1
Published: about 15 years ago

10.1186/s12864-015-1212-2

Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.)
Cited by: 78
Author(s): Rina Kamenetsky, Adi Faigenboim, Einat Shemesh Mayer, Tomer Ben Michael, Chen Gershberg, Sagie Kimhi, I. Esquira, Sarit Rohkin Shalom, Dani Eshel, Haim D. Rabinowitch, Amir Sherman
Software Mentions: 1
Published: over 11 years ago

10.3390/cancers12010118

Ubiquitin Carboxyl-Terminal Hydrolase L1 (UCHL1) Promotes Uterine Serous Cancer Cell Proliferation and Cell Cycle Progression
Cited by: 22
Author(s): Suet-Ying Kwan, Chi Lam Au‐Yeung, Tsz-Lun Yeung, Ángela Rynne-Vidal, Kwong-Kwok Wong, John I. Risinger, Hui Kuan Lin, Rosemarie Schmandt, Melinda S. Yates, Samuel C. Mok, Karen H. Lu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-015-1930-5

An improved genome reference for the African cichlid, Metriaclima zebra
Cited by: 60
Author(s): Matthew A. Conte, Thomas D. Kocher
Software Mentions: 1
Published: almost 11 years ago

10.3390/cancers12010126

Whole Genome Sequencing of Spontaneously Occurring Rat Natural Killer Large Granular Lymphocyte Leukemia Identifies JAK1 Somatic Activating Mutation
Cited by: 1
Author(s): T. Tiffany Wang, Jun Yang, Shubha Dighe, Matthew W. Schmachtenberg, Nathan T. Leigh, Emily Farber, Suna Önengüt-Gümüşcü, David J. Feith, Aakrosh Ratan, Thomas L. Olson
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-892

Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis)
Cited by: 22
Author(s): Jin‐Zhi Zhang, Kun Zhao, Xiaoyan Ai, Chun-Gen Hu
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-11-730

Transcriptome analysis of grain-filling caryopses reveals involvement of multiple regulatory pathways in chalky grain formation in rice
Cited by: 72
Author(s): Xiaolu Liu, Tao Guo, Xiangyuan Wan, Haiyang Wang, Mingzhu Zhu, Aili Li, Ning Su, Yingyue Shen, Bigang Mao, Huqu Zhai, Long Mao, Jianmin Wan
Software Mentions: 1
Published: over 15 years ago

10.3390/cancers12020364

Patient-Derived Scaffolds of Colorectal Cancer Metastases as an Organotypic 3D Model of the Liver Metastatic Microenvironment
Cited by: 38
Author(s): Edoardo D’Angelo, Dipa Natarajan, Francesca Sensi, Omolola Ajayi, Matteo Fassan, Enzo Mammano, Pierluigi Pilati, Piero G. Pavan, Silvia Bresolin, Melissa Preziosi, Rosa Miquel, Yoh Zen, Shilpa Chokshi, Krishna Menon, Nigel Heaton, Gaya Spolverato, Martina Piccoli, Roger Williams, Luca Urbani, Marco Agostini
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12113180

NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program
Cited by: 3
Author(s): Thomas Delcourt, Kevin Vanneste, Mohamed Rida Soumali, Wim Coucke, Vanessa Ghislain, Aline Hébrant, Els Van Valckenborgh, Sigrid C. J. De Keersmaecker, Nancy Roosens, P. Van de Walle, Marc Van den Bulcke, Aline Antoniou
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers12030742

The Role of PTEN Loss in Immune Escape, Melanoma Prognosis and Therapy Response
Cited by: 31
Author(s): Rita Cabrita, Shamik Mitra, Adriana Sanna, Henrik Ekedahl, Kristina Lövgren, Håkan Olsson, Christian Ingvar, Karolin Isaksson, Martin Lauss, Ana Carneiro, Göran Jönsson
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13081837

Identification of a Candidate Gene Set Signature for the Risk of Progression in IgM MGUS to Smoldering/Symptomatic Waldenström Macroglobulinemia (WM) by a Comparative Transcriptome Analysis of B Cells and Plasma Cells
Cited by: 7
Author(s): Alessandra Trojani, Barbara Di Camillo, Luca Emanuele Bossi, Livia Leuzzi, Antonino Greco, Alessandra Tedeschi, Anna Maria Frustaci, Marina Deodato, Giulia Zamprogna, Alessandro Beghini, Roberto Cairoli
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00715-20

Tn-Seq Analysis Identifies Genes Important for Yersinia pestis Adherence during Primary Pneumonic Plague
Cited by: 8
Author(s): Kara R. Eichelberger, Victoria E. Sepúlveda, Jennifer Lynn Ford, Sara R. Selitsky, Piotr A. Mieczkowski, Joel S. Parker, William E. Goldman
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers10050130

The EBV-Encoded Oncoprotein, LMP1, Induces an Epithelial-to-Mesenchymal Transition (EMT) via Its CTAR1 Domain through Integrin-Mediated ERK-MAPK Signalling
Cited by: 30
Author(s): Mhairi A. Morris, Louise Laverick, Wenbin Wei, Alexandra M Davis, Samantha O'Neill, Liam Wood, J. Wright, Christopher W. Dawson, Young Lw
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-12-69

Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis
Cited by: 155
Author(s): Paola Venier, L Varotto, Umberto Rosani, Caterina Millino, Barbara Celegato, Filippo Bernante, Gerolamo Lanfranchi, Beatriz Novoa, Philippe Roch, António Figueras, Alberto Pallavicini
Software Mentions: 1
Published: over 15 years ago

10.3390/cancers12061464

The miR-26b-5p/KPNA2 Axis Is an Important Regulator of Burkitt Lymphoma Cell Growth
Cited by: 17
Author(s): Fubiao Niu, Marta Kazimierska, Ilja M. Nolte, Miente Martijn Terpstra, Debora de Jong, Jasper Koerts, Tineke van der Sluis, Bea Rutgers, Ryan M. O’Connell, Klaas Kok, Anke van den Berg, Agnieszka Dzikiewicz‐Krawczyk, Joost Kluiver
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers12071918

Expression of MALAT1 Promotes Trastuzumab Resistance in HER2 Overexpressing Breast Cancers
Cited by: 13
Author(s): Yanyuan Wu, Marianna Sarkissyan, Ochanya Ogah, Juri Kim, Jaydutt V. Vadgama
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers10050150

Determining the Radiation Enhancement Effects of Gold Nanoparticles in Cells in a Combined Treatment with Cisplatin and Radiation at Therapeutic Megavoltage Energies
Cited by: 33
Author(s): Celina Yang, Kyle Bromma, Wonmo Sung, Jan Schuemann, Devika B. Chithrani
Software Mentions: 1
Published: about 8 years ago

10.1155/2018/2731039

A Novel Mutation in the <i>EIF2B4</i> Gene Associated with Leukoencephalopathy with Vanishing White Matter
Cited by: 3
Author(s): Dineshani Hettiaracchchi, Nilaksha Neththikumara, Sajeewani Pathirana, Anuruddha Padeniya, Vajira H. W. Dissanayake
Software Mentions: 1
Published: about 8 years ago

10.1186/1757-1626-1-352

A case of PTSD presenting with psychotic symptomatology: a case report
Cited by: 7
Author(s): Georgios Floros, I. Charatsidou, Grigorios Lavrentiadis
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-9-199

Altered gene expression in the superior temporal gyrus in schizophrenia
Cited by: 68
Author(s): Nikola A. Bowden, Rodney J. Scott, Paul A. Tooney
Software Mentions: 1
Published: over 18 years ago

10.1016/j.cell.2018.04.015

The Cohesin Ring Uses Its Hinge to Organize DNA Using Non-topological as well as Topological Mechanisms
Cited by: 119
Author(s): Manoj Srinivasan, Johanna C. Scheinost, Naomi J Petela, Thomas G. Gligoris, Maria Wissler, Sugako Ogushi, James E. Collier, Menelaos Voulgaris, Alexander Kurze, Kok-Lung Chan, Bin Hu, Vincenzo Costanzo, Kim Nasmyth
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-9-154

Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling
Cited by: 93
Author(s): Jürgen Ehlting, Sunita G. Chowrira, Nathalie Mattheus, Dana Aeschliman, Gen Ichiro Arimura, Jörg Bohlmann
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-8-420

Promoter analysis of intestinal genes induced during iron-deprivation reveals enrichment of conserved SP1-like binding sites
Cited by: 11
Author(s): James F. Collins, Zihua Hu
Software Mentions: 1
Published: over 19 years ago

10.1186/2045-3701-3-44

Sorting nexin 24 genetic variation associates with coronary artery aneurysm severity in Kawasaki disease patients
Cited by: 14
Author(s): Ying Lin, Jen‐Ping Chang, Xiang Liu, Ting Hsu Lin, Shaohui Huang, Chien-Chang Liao, Cheng Wen Lin, Wen Kuei Chien, Jin Hua Chen, Jer Yuarn Wu, Chien Hsiun Chen, Li Chang, Hsinyi Tsang, Kuan Teh Jeang, Chia Yen Chen, Fuu Jen Tsai
Software Mentions: 1
Published: over 13 years ago

10.1186/2045-3701-4-67

Genetic variants of glutamate receptor gene family in Taiwanese Kawasaki disease children with coronary artery aneurysms
Cited by: 5
Author(s): Ying Lin, Jen‐Ping Chang, Xiang Liu, Hsinyi Tsang, Ting Hsu Lin, Chien-Chang Liao, Shaohui Huang, Wen Kuei Chien, Jin Hua Chen, Jer Yuarn Wu, Chien Hsiun Chen, Li Chang, Cheng Wen Lin, Tsung Jung Ho, Fuu Jen Tsai
Software Mentions: 1
Published: over 11 years ago

10.4161/15384101.2014.967123

The impact of the HIRA histone chaperone upon global nucleosome architecture
Cited by: 15
Author(s): Csenge Gal, Karen Moore, Konrad Paszkiewicz, Nicholas A. Kent, Simon K. Whitehall
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-8-323

Adaptive expression responses in the Pol-γ null strain of S. pombe depleted of mitochondrial genome
Cited by: 19
Author(s): Zhaoqing Chu, Juntao Li, Majid Eshaghi, R. Krishna Murthy Karuturi, Kui Lin, Jianhua Liu
Software Mentions: 1
Published: almost 19 years ago

10.1128/mSystems.00038-15

Comprehensive Transcriptome Profiles of Streptococcus mutans UA159 Map Core Streptococcal Competence Genes
Cited by: 52
Author(s): Rabia Khan, Håkon Valen, Hedda Høvik, Heidi Aarø Åmdal, T. Chen, Donald A. Morrison, Fernanda Cristina Petersen
Software Mentions: 1
Published: over 10 years ago

10.1038/cddis.2016.464

Loss of miR-514a-3p regulation of PEG3 activates the NF-kappa B pathway in human testicular germ cell tumors
Cited by: 45
Author(s): Deniz M. Özata, Xidan Li, Linkiat Lee, Ji‐Kai Liu, Dudi Warsito, Praveensingh Hajeri, Isabell Hultman, Omid Fotouhi, Stefan L. Marklund, Lars Ährlund‐Richter, C. Christofer Juhlin, Catharina Larsson, Weng‐Onn Lui
Software Mentions: 1
Published: about 9 years ago

10.1038/cddis.2017.136

Tumor-treating fields elicit a conditional vulnerability to ionizing radiation via the downregulation of BRCA1 signaling and reduced DNA double-strand break repair capacity in non-small cell lung cancer cell lines
Cited by: 75
Author(s): Narasimha Kumar Karanam, Kannan Srinivasan, Lianghao Ding, Brock J. Sishc, Debabrata Saha, Michael D. Story
Software Mentions: 1
Published: over 9 years ago

10.1186/1475-2891-12-24

Associations between dietary patterns and gene expression profiles of healthy men and women: a cross-sectional study
Cited by: 58
Author(s): Annie Bouchard-Mercier, Ann-Marie Paradis, Iwona Rudkowska, Simone Lemieux, Patrick Couture, Marie‐Claude Vohl
Software Mentions: 1
Published: over 13 years ago

10.1038/s41419-020-03147-9

LncRNA LINC00472 regulates cell stiffness and inhibits the migration and invasion of lung adenocarcinoma by binding to YBX1
Cited by: 49
Author(s): Xiaolei Deng, Wei Xiong, Xianjie Jiang, Shanshan Zhang, Zheng Li, Yanhong Zhou, Bo Xiang, Ming Zhou, Xiaoling Li, Guiyuan Li, Zhaoyang Zeng, Zhaojian Gong
Software Mentions: 1
Published: over 5 years ago

10.1038/cddis.2017.406

Silencing FLI or targeting CD13/ANPEP lead to dephosphorylation of EPHA2, a mediator of BRAF inhibitor resistance, and induce growth arrest or apoptosis in melanoma cells
Cited by: 27
Author(s): Alireza Azimi, Rainer Tuominen, Fernanda Costa Svedman, Stefano Caramuta, Maria Pernemalm, Marianne Frostvik Stolt, Lena Kanter, Pedram Kharaziha, Janne Lehtiö, Carolina Johansson, Veronica Höiom, Johan Hansson, Suzanne Egyházi Brage
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13075-016-0991-4

Comparative analysis of gene expression profiles in normal hip human cartilage and cartilage from patients with necrosis of the femoral head
Cited by: 20
Author(s): Ruiyu Liu, Qi Liu, Kunzheng Wang, Xiaoqian Dang, Feng Zhang
Software Mentions: 1
Published: about 10 years ago

10.1038/cddis.2017.402

Novel chimeric transcript RRM2-c2orf48 promotes metastasis in nasopharyngeal carcinoma
Cited by: 19
Author(s): Ping Han, Renhui Chen, Fang Wang, Jiayi Zeng, Shitong Yu, Lihua Xu, Qian Cai, Faya Liang, Tian-Liang Xia, Zhi-Rui Lin, Qian Zhong, Xiaoming Huang
Software Mentions: 1
Published: almost 9 years ago

10.1038/cddis.2015.25

A benzimidazole derivative exhibiting antitumor activity blocks EGFR and HER2 activity and upregulates DR5 in breast cancer cells
Cited by: 57
Author(s): Binbin Chu, F Liu, L Li, Chao Ding, K Chen, Qiao Sun, Zhifa Shen, Yong Tan, Chunyan Tan, Yuyang Jiang
Software Mentions: 1
Published: over 11 years ago

10.1038/s41420-018-0063-4

Cordycepin induces apoptosis of human ovarian cancer cells by inhibiting CCL5-mediated Akt/NF-κB signaling pathway
Cited by: 27
Author(s): Zhen Cui, Soo Jung Park, Eunbi Jo, In Hu Hwang, Kyung Bok Lee, Sung Woo Kim, Dae Joon Kim, Jong Chun Joo, Seok Hoon Hong, Min Goo Lee, Ik Soon Jang
Software Mentions: 1
Published: about 8 years ago

10.1038/cddiscovery.2016.2

PKC activation sensitizes basal-like breast cancer cell lines to Smac mimetics
Cited by: 4
Author(s): Louise Cornmark, Christian Holmgren, Katarzyna Chmielarska Masoumi, Christer Larsson
Software Mentions: 1
Published: over 10 years ago

10.1038/s41421-019-0121-y

Structural insight into human N6amt1–Trm112 complex functioning as a protein methyltransferase
Cited by: 26
Author(s): Wenjing Li, Yu Shi, Tianlong Zhang, Jie Ye, Jianping Ding
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12937-018-0383-5

Severely malnourished children with a low weight-for-height have similar mortality to those with a low mid-upper-arm-circumference: II. Systematic literature review and meta-analysis
Cited by: 18
Author(s): Emmanuel Grellety, Michael Golden
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13008-020-00069-y

Microarray expression profile of mRNAs and long noncoding RNAs and the potential role of PFK-1 in infantile hemangioma
Cited by: 5
Author(s): Kaiying Yang, Xuepeng Zhang, Linwen Chen, Siyuan Chen, Yi Ji
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00323-19

The Oral Mouse Microbiome Promotes Tumorigenesis in Oral Squamous Cell Carcinoma
Cited by: 44
Author(s): Philip Stashenko, Susan Yost, Yoon-Hee Choi, Theodora E. Danciu, Tsute Chen, Subbiah Yoganathan, Christine A. Kressirer, Montserrat Ruiz-Tourrella, Bikul Das, Alexis Kokaras, Jorge Frias-Lopez
Software Mentions: 1
Published: almost 7 years ago

10.1007/s13402-020-00531-7

Pervasive promoter hypermethylation of silenced TERT alleles in human cancers
Cited by: 11
Author(s): David Esopi, Mindy K. Graham, Jacqueline A. Brosnan-Cashman, Jennifer Meyers, Ajay Vaghasia, Anuj Gupta, Balasubramanian Kumar, Michael C. Haffner, Christopher M. Heaphy, Angelo M. De Marzo, Alan K. Meeker, William G. Nelson, Sarah J. Wheelan, Srinivasan Yegnasubramanian
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-8-25

Exploiting combinatorial cultivation conditions to infer transcriptional regulation
Cited by: 49
Author(s): Theo Knijnenburg, Johannes H. de Winde, Jean-Marc Daran, Pascale Daran‐Lapujade, Jack T. Pronk, Marcel J. T. Reinders, Lodewyk Wessels
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-8-385

Five distinct biological processes and 14 differentially expressed genes characterize TEL/AML1-positive leukemia
Cited by: 57
Author(s): Virginie Gandemer, Anne-Gaëlle Rio, Marie de Tayrac, Vonnick Sibut, Stéphanie Mottier, Béatrice Ly Sunnaram, Cathérine Henry, Annabelle Monnier, Christian Berthou, E. Le Gall, A. Le Treut, Claudine Schmitt, Jean‐Yves Le Gall, Jean Mosser, Marie‐Dominique Galibert
Software Mentions: 1
Published: almost 19 years ago

10.1016/j.celrep.2017.10.040

The Role of Eif6 in Skeletal Muscle Homeostasis Revealed by Endurance Training Co-expression Networks
Cited by: 23
Author(s): Kim Clarke, Sara Ricciardi, Tim Pearson, Izwan Bharudin, Peter K. Davidsen, Michela Bonomo, Daniela Brina, Alessandra Scagliola, Deborah M. Simpson, Robert J. Beynon, Farhat L. Khanim, John Ankers, Mark A. Sarzynski, Sujoy Ghosh, Addolorata Pisconti, Jan Rozman, Martin Hrabě de Angelis, Christopher M. Bunce, Claire E. Stewart, Stuart Egginton, Mark X. Caddick, Malcolm J. Jackson, Claude Bouchard, Stefano Biffo, Francesco Falciani
Software Mentions: 1
Published: almost 9 years ago

10.3934/biophy.2017.1.1

New open conformation of SMYD3 implicates conformational selection and allostery
Cited by: 8
Author(s): Nicholas Spellmon, Xiaonan Sun, Xue Wang, Joshua Holcomb, Srinivas Chakravarthy, Weifeng Shang, Brian F.P. Edwards, Nualpun Sirinupong, Chunying Li, Zhe Yang
Software Mentions: 1
Published: over 10 years ago

10.1016/j.celrep.2018.06.115

The Microtubule Regulator NEK7 Coordinates the Wiring of Cortical Parvalbumin Interneurons
Cited by: 19
Author(s): Antonio J. Hinojosa, Rubén Deogracias, Beatriz Rico
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-018-4748-0

Randomized DNA libraries construction tool: a new 3-bp ‘frequent cutter’ TthHB27I/sinefungin endonuclease with chemically-induced specificity
Cited by: 2
Author(s): Daria Krefft, Aliaksei Papkov, Maciej Prusinowski, Agnieszka Żylicz-Stachula, Piotr M. Skowron
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-017-4222-4

Subfunctionalization influences the expansion of bacterial multidrug antibiotic resistance
Cited by: 4
Author(s): Elena Perrin, Marco Fondi, Emanuele Bosi, Alessio Mengoni, Silvia Buroni, Viola Camilla Scoffone, Miguel A. Valvano, Renato Fani
Software Mentions: 1
Published: almost 9 years ago

10.1186/ar1985

Identification of arthritis-related gene clusters by microarray analysis of two independent mouse models for rheumatoid arthritis
Cited by: 52
Author(s): Noriyuki Fujikado, Shinobu Saijo, Yoichiro Iwakura
Software Mentions: 1
Published: over 20 years ago