cran: SAM | Projects | Ecosyste.ms: Papers

10.3390/ijms131012857

Fragment-Based Screening by Protein Crystallography: Successes and Pitfalls
Cited by: 47
Author(s): Zorik Chilingaryan, Zhou Yin, Aaron J. Oakley
Software Mentions: 1
Published: almost 14 years ago

Identification of Recurrence Related microRNAs in Hepatocellular Carcinoma after Surgical Resection
Cited by: 22
Author(s): Zhen Yang, Ruoyu Miao, Guangbing Li, Yan Wu, Simon C. Robson, Xiaobo Yang, Yi Zhao, Haitao Zhao, Yang Zhong
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms140611560

MicroRNA-Regulated Protein-Protein Interaction Networks and Their Functions in Breast Cancer
Cited by: 55
Author(s): Chia Hsien Lee, Wen-Hsing Kuo, Lin Chen, Yen Jen Oyang, Hsuan‐Cheng Huang, Hsueh‐Fen Juan
Software Mentions: 1
Published: about 13 years ago

10.1016/j.jbc.2021.100614

Dynamic association of the H3K64 trimethylation mark with genes encoding exported proteins in Plasmodium falciparum
Cited by: 2
Author(s): C. A. Jabeena, Gayathri Govindaraju, Mukul Rawat, Soundhararajan Gopi, Devadathan Valiyamangalath Sethumadhavan, Abdul Jaleel, Dhakshmi Sasankan, Krishanpal Karmodiya, Arumugam Rajavelu
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms141020326

MicroRNA Expression Profiling of the Porcine Developing Hypothalamus and Pituitary Tissue
Cited by: 18
Author(s): Lifan Zhang, Zhaowei Cai, Song Wei, Huiyun Zhou, Hongmei Zhou, Xiaoling Jiang, N. Xu
Software Mentions: 1
Published: almost 13 years ago

10.1117/1.JBO.20.10.106001

Multispectral tissue characterization for intestinal anastomosis optimization
Cited by: 15
Author(s): Jaepyeong Cha, Azad Shademan, Hanh N. D. Le, Ryan Decker, Peter C.W. Kim, Jin U. Kang, Axel Krieger
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms151222835

Biomarkers of Treatment Toxicity in Combined-Modality Cancer Therapies with Radiation and Systemic Drugs: Study Design, Multiplex Methods, Molecular Networks
Cited by: 10
Author(s): Anne Hansen Ree, Sebastian Meltzer, Kjersti Flatmark, Svein Dueland, Erta Kalanxhi
Software Mentions: 1
Published: over 11 years ago

10.1093/ajcn/nqy007

Changes in susceptibility to life-threatening infections after treatment for complicated severe malnutrition in Kenya
Cited by: 11
Author(s): Moses Ngari, Laura Mwalekwa, Molline Timbwa, Fauzat Hamid, Rehema Ali, Per Ole Iversen, Greg Fegan, James A. Berkley
Software Mentions: 1
Published: over 8 years ago

10.1016/S1674-8301(11)60035-3

Localization of epileptic foci in Children with childhood absence epilepsy by magnetoencephalography combined with synthetic aperture magnetometry
Cited by: 1
Author(s): Xiuxiu Hu, Jun Dong, Xiaoshan Wang, Ting Wu, Lu Yang, Xiaopeng Lu
Software Mentions: 1
Published: about 15 years ago

10.3390/ijms161226128

Omics-Based Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes during Early Infestation by Small Brown Planthopper
Cited by: 9
Author(s): Weilin Zhang, Li‐Tao Yang, Mei Li, Bo Ma, Chengqi Yan, Jianping Chen
Software Mentions: 1
Published: over 10 years ago

10.1186/s12929-016-0265-0

Integrated miRNA and mRNA expression profiling in fetal hippocampus with Down syndrome
Cited by: 18
Author(s): Weili Shi, Zhong-Zhen Liu, Hongdan Wang, Dong Wu, Hui Zhang, Hai Xiao, Chaowu Yan, Qiaofang Hou, Shixiu Liao
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-12-S13-S15

Finding consistent disease subnetworks across microarray datasets
Cited by: 39
Author(s): Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
Software Mentions: 1
Published: over 14 years ago

10.7150/jca.51179

Prognostic significance of KRT19 in Lung Squamous Cancer
Cited by: 10
Author(s): Xun Yuan, Ming Yi, Bing Dong, Qian Chu, Kongming Wu
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.12122

Therapy targets in glioblastoma and cancer stem cells: lessons from haematopoietic neoplasms
Cited by: 42
Author(s): Maria Linda Cruceru, Monica Neagu, Jean‐Baptiste Demoulin, Stefan N. Constantinescu
Software Mentions: 1
Published: almost 13 years ago

10.1111/jcmm.13739

Integrative analysis of competing endogenous <scp>RNA</scp> networks reveals the functional lnc <scp>RNA</scp> s in heart failure
Cited by: 24
Author(s): Zhimin Fan, Shanshan Gao, Yequn Chen, Bo Xu, Chenguang Yu, Minghui Yue, Xuerui Tan
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.13808

Exosomal miR‐95‐5p regulates chondrogenesis and cartilage degradation via histone deacetylase 2/8
Cited by: 72
Author(s): Guping Mao, Shu Hu, Ziji Zhang, Peihui Wu, Xiaoyi Zhao, Ru Lin, Weiming Liao, Yan Kang
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.12462

A three ion channel genes-based signature predicts prognosis of primary glioblastoma patients and reveals a chemotherapy sensitive subtype
Cited by: 19
Author(s): Hao‐Yuan Wang, Jiye Li, Xiu Liu, Xiaoyan Yan, Wen Wang, Fan Wu, Tingyu Liang, Fan Yang, Huimin Hu, Hengxu Mao, Yanwei Liu, Shizhong Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1111/jcmm.14647

Prognostic power of a lipid metabolism gene panel for diffuse gliomas
Cited by: 55
Author(s): Fan Wu, Zheng Zhao, Rui‐Chao Chai, Yuqing Liu, Guanzhang Li, Haiyan Jiang, Tao Jiang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms17020228

Identification of Novel Pathways in Plant Lectin-Induced Cancer Cell Apoptosis
Cited by: 12
Author(s): Zheng Shi, Rong Sun, Tian Yu, Rong Liu, Cheng Liu, Ji Bao, Liang Zou, Yong Tang
Software Mentions: 1
Published: over 10 years ago

10.1111/jcmm.15924

Characterization and prognostic significance of alternative splicing events in lower‐grade diffuse gliomas
Cited by: 3
Author(s): Zheng Zhao, Guanzhang Li, Yuqing Liu, Ruoyu Huang, Kuanyu Wang, Haiyan Jiang, Renpeng Li, Rui‐Chao Chai, Chuanbao Zhang, Fan Wu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1758-2946-6-1

Prediction of novel drug indications using network driven biological data prioritization and integration
Cited by: 35
Author(s): Ala Qabaja, Mohammed Alshalalfa, Eisa Alanazi, Reda Alhajj
Software Mentions: 1
Published: over 12 years ago

10.1186/2043-9113-1-12

Peripheral blood gene expression profiles in COPD subjects
Cited by: 30
Author(s): Soumyaroop Bhattacharya, Shivraj Tyagi, Sorachai Srisuma, Dawn L. DeMeo, Steven D. Shapiro, Raphael Bueno, Edwin K. Silverman, John J. Reilly, Thomas J. Mariani
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms17050598

Identification of 42 Genes Linked to Stage II Colorectal Cancer Metastatic Relapse
Cited by: 8
Author(s): Rabeah Al-Temaimi, Tuan Zea Tan, Makia J. Marafie, Jean Paul Thiery, Philip Quirke, Fahd Al-Mulla
Software Mentions: 1
Published: over 10 years ago

10.3390/jcm7120486

The Experimental Effects of Acute Exercise on Long-Term Emotional Memory
Cited by: 16
Author(s): Breanna Wade, Paul D. Loprinzi
Software Mentions: 1
Published: over 7 years ago

10.3390/jcm9061662

Non-Invasive Skin Cancer Diagnosis Using Hyperspectral Imaging for In-Situ Clinical Support
Cited by: 41
Author(s): Raquel Leon, Beatriz Martinez-Vega, Himar Fabelo, Samuel Ortega, V.M. Melian, Irene Mencía Castaño, G. Carretero, Pablo Almeida, Aday García, Eduardo Quevedo, J Hernández, Bernardino Clavo
Software Mentions: 1
Published: about 6 years ago

10.3390/jcm10184261

Epidermal-Derived Hedgehog Signaling Drives Mesenchymal Proliferation during Digit Tip Regeneration
Cited by: 1
Author(s): Zeshaan N. Maan, Yuval Rinkevich, Janos A. Barrera, Kellen Chen, Dominic Henn, Deshka S. Foster, Clark A. Bonham, Jagannath Padmanabhan, Dharshan Sivaraj, Dominik Duscher, Michael S. Hu, Kelley S. Yan, Michael Januszyk, Michael T. Longaker, Irving L. Weissman, Geoffrey C. Gurtner
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm10194348

Epidemiologic, Postmortem Computed Tomography-Morphologic and Biomechanical Analysis of the Effects of Non-Invasive External Pelvic Stabilizers in Genuine Unstable Pelvic Injuries
Cited by: 1
Author(s): Christian Kleber, Mirja Haussmann, Michael Hetz, Michael Tsokos, C. Buschmann
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm10194431

Using Deep Neural Networks for Predicting Age and Sex in Healthy Adult Chest Radiographs
Cited by: 13
Author(s): Chung‐Yi Yang, Yi Pan, Yen Chou, Chia-Jung Yang, Ching-Chung Kao, Kuan-Chieh Huang, Jing-Shan Chang, Hung-Chieh Chen, Kuei-Hong Kuo
Software Mentions: 1
Published: almost 5 years ago

10.1017/cts.2018.190

2157 The socially animated machine (SAM) robot: A social skills intervention for children with autism spectrum disorder
Cited by: 2
Author(s): Jenna B. Lebersfeld, Caleb J. Brasher, Christian D. Clesi, Carl E. Stevens, Fred J. Biasini, Maria Hopkins
Software Mentions: 1
Published: about 8 years ago

10.1093/ajcn/nqaa359

Postdischarge interventions for children hospitalized with severe acute malnutrition: a systematic review and meta-analysis
Cited by: 6
Author(s): Christie Noble, Jonathan P Sturgeon, Mutsa Bwakura‐Dangarembizi, Paul Kelly, Beatrice Amadi, Andrew J. Prendergast
Software Mentions: 1
Published: over 5 years ago

10.1186/2251-6581-11-7

RETRACTED ARTICLE: Mobile phone text messaging and Telephone follow-up in type 2 diabetic patients for 3 months: a comparative study
Cited by: 35
Author(s): Mitra Zolfaghari, Seyedeh A Mousavifar, Hamid Haghani
Software Mentions: 1
Published: almost 14 years ago

10.1155/2016/2327341

Expression of the Receptor for Advanced Glycation End Products in Epicardial Fat: Link with Tissue Thickness and Local Insulin Resistance in Coronary Artery Disease
Cited by: 23
Author(s): Elena Dozio, Elena Vianello, Silvia Briganti, John Lamont, Lorenza Tacchini, Gerd Schmitz
Software Mentions: 1
Published: over 10 years ago

10.1186/s40337-021-00475-9

Emotional reactivity to binge food and erotic cues in women with bulimia nervosa symptoms
Cited by: 1
Author(s): Isabel Hernández-Rivero, Jens Blechert, Laura Miccoli, Katharina Naomi Eichin, M. Carmen Fernández‐Santaella, Rafael Delgado-Rodríguez
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms17060883

Transcriptional Profiling and miRNA-Target Network Analysis Identify Potential Biomarkers for Efficacy Evaluation of Fuzheng-Huayu Formula-Treated Hepatitis B Caused Liver Cirrhosis
Cited by: 16
Author(s): Qilong Chen, Feizhen Wu, Mei Wang, Shu Dong, Yamin Liu, Yi‐Yu Lu, Yanan Song, Qian-Mei Zhou, Ping Liu, Yunquan Luo, Shi‐Bing Su
Software Mentions: 1
Published: about 10 years ago

10.1093/jxb/eru255

PEG-mediated osmotic stress induces premature differentiation of the root apical meristem and outgrowth of lateral roots in wheat
Cited by: 76
Author(s): Hongtao Ji, Ling Liu, Kexue Li, Xie Qingen, Zhijuan Wang, Xiuhua Zhao, Xia Li
Software Mentions: 1
Published: about 12 years ago

10.1093/jxb/eru482

Meristem size contributes to the robustness of phyllotaxis in Arabidopsis
Cited by: 40
Author(s): Benoît Landrein, Yassin Refahi, Fabrice Besnard, Nathan Hervieux, Vincent Mirabet, Arezki Boudaoud, Teva Vernoux, Olivier Hamant
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-10-43

An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters
Cited by: 17
Author(s): Qingbo Li, Bryan A. P. Roxas
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2105-12-305

IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data
Cited by: 27
Author(s): Hyunsoo Kim, Yingtao Bi, Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri
Software Mentions: 1
Published: about 15 years ago

10.1093/jxb/ery442

A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice
Cited by: 5
Author(s): Sadia Nadir, Wei Li, Qian Zhu, Sehroon Khan, Xiaoling Zhang, Hui Zhang, Zhen-Fei Wei, Meng-Ting Li, Li Zhou, Chengyun Li, Lijuan Chen, Dong‐Sun Lee
Software Mentions: 1
Published: over 7 years ago

10.1093/jxb/eraa209

Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis
Cited by: 20
Author(s): Jinmi Yoon, Lae-Hyeon Cho, Wei Yang, Richa Pasriga, Yunfei Wu, Woo‐Jong Hong, Charlotte Bureau, Soo Jin Wi, Tao Zhang, Rongchen Wang, Dabing Zhang, Kyungsook Jung, Ky Young Park, Christophe Périn, Yunde Zhao, Gynheung An
Software Mentions: 1
Published: about 6 years ago

10.1093/jxb/erab058

Resolving a QTL complex for height, heading, and grain yield on chromosome 3A in bread wheat
Cited by: 8
Author(s): Alba Farre Martinez, Clare Lister, Sue Freeman, Jun Ma, Simon Berry, Luzie U. Wingen, Simon Griffiths
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms17101602

Fine Mapping of Virescent Leaf Gene v-1 in Cucumber (Cucumis sativus L.)
Cited by: 27
Author(s): Moonsik Han, Shengping Zhang, Min Wang, Ye Wang, Yiqun Weng, Xingfang Gu
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.0020011

Genome-Wide Screen for Salmonella Genes Required for Long-Term Systemic Infection of the Mouse
Cited by: 315
Author(s): Trevor D. Lawley, Kaman Chan, Lucinda J. Thompson, Charles C. Kim, Gregory Govoni, Denise M. Monack
Software Mentions: 1
Published: over 20 years ago

10.1371/journal.ppat.0030022

A Link between Virulence and Homeostatic Responses to Hypoxia during Infection by the Human Fungal Pathogen Cryptococcus neoformans
Cited by: 161
Author(s): Cheryl D. Chun, Oliver W. Liu, Hiten D. Madhani
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.0030050

Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA
Cited by: 319
Author(s): Robyn M. Perrin, Natalie D. Fedorova, Jin Woo Bok, Robert A. Cramer, Jennifer Wortman, Heenam Stanley Kim, William C. Nierman, Nancy P. Keller
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.0030083

Gene Expression Profiles of Chlamydophila pneumoniae during the Developmental Cycle and Iron Depletion–Mediated Persistence
Cited by: 81
Author(s): André P. Mäurer, Adrian Mehlitz, Hans-Joachim Mollenkopf, Thomas F. Meyer
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.ppat.0040006

Distinct TLR- and NLR-Mediated Transcriptional Responses to an Intracellular Pathogen
Cited by: 198
Author(s): Jess H. Leber, Gregory T. Crimmins, Sridharan Raghavan, Nicole Meyer-Morse, Jeffery S. Cox, Daniel A. Portnoy
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.1000155

Importance of Mitochondria in Survival of Cryptococcus neoformans Under Low Oxygen Conditions and Tolerance to Cobalt Chloride
Cited by: 65
Author(s): Susham S. Ingavale, Yun C. Chang, Hyeseung Lee, Carol M. McClelland, Madeline L. Leong, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1000200

A Sterol-Regulatory Element Binding Protein Is Required for Cell Polarity, Hypoxia Adaptation, Azole Drug Resistance, and Virulence in Aspergillus fumigatus
Cited by: 289
Author(s): Sven D. Willger, Srisombat Puttikamonkul, Kwang-Hyung Kim, James B. Burritt, Nora Grahl, Laurel J. Metzler, Robert J. Barbuch, Martin Bard, Christopher B. Lawrence, Robert A. Cramer
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000229

Identification of Tuberculosis Susceptibility Genes with Human Macrophage Gene Expression Profiles
Cited by: 128
Author(s): Nguyen Thuy Thuong Thuong, Sarah J. Dunstan, Tran Thi Hong Chau, Vésteinn Thórsson, Cameron P. Simmons, Nguyen Than Ha Quyen, Guy Thwaites, Nguyễn Thị Ngọc Lan, Martin L. Hibberd, Yik Ying Teo, Mark Seielstad, Alan Aderem, Jeremy Farrar, Thomas R. Hawn
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000383

Identification of Proteins Targeted by the Thioredoxin Superfamily in Plasmodium falciparum
Cited by: 76
Author(s): Nicole Sturm, Esther Jortzik, Boniface M. Mailu, Saša Končarević, Marcel Deponte, Karl Forchhammer, Stefan Rahlfs, Katja Becker
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000569

Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors
Cited by: 241
Author(s): Christian Flueck, Richárd Bártfai, Jennifer Volz, Igor Niederwieser, Adriana M. Salcedo‐Amaya, Blaise T. F. Alako, Florian Ehlgen, Stuart A. Ralph, Alan F. Cowman, Zbynek Bozdech, Hendrik G. Stunnenberg, Till S. Voss
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.ppat.1000737

Histone Deacetylases Play a Major Role in the Transcriptional Regulation of the Plasmodium falciparum Life Cycle
Cited by: 127
Author(s): Balbir K. Chaal, Anjali Gupta, Brigitta Wastuwidyaningtyas, Yen-Hoon Luah, Zbynek Bozdech
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1000783

Transit through the Flea Vector Induces a Pretransmission Innate Immunity Resistance Phenotype in Yersinia pestis
Cited by: 117
Author(s): Viveka Vadyvaloo, Clayton O. Jarrett, Daniel E. Sturdevant, Florent Sebbane, B. Joseph Hinnebusch
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1000848

Cryptococcus neoformans Overcomes Stress of Azole Drugs by Formation of Disomy in Specific Multiple Chromosomes
Cited by: 377
Author(s): Edward Sionov, Hyeseung Lee, Yun C. Chang, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: over 16 years ago

10.3390/ijms17122091

Transcriptome of Cultured Lung Fibroblasts in Idiopathic Pulmonary Fibrosis: Meta-Analysis of Publically Available Microarray Datasets Reveals Repression of Inflammation and Immunity Pathways
Cited by: 22
Author(s): Laurent Plantier, Hélène Renaud, Renaud Respaud, S. Marchand-Adam, Bruno Crestani
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1001026

DNA Damage Triggers Genetic Exchange in Helicobacter pylori
Cited by: 109
Author(s): Marion S. Dorer, Jutta Fero, Nina R. Salama
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1001065

Reciprocal Analysis of Francisella novicida Infections of a Drosophila melanogaster Model Reveal Host-Pathogen Conflicts Mediated by Reactive Oxygen and imd-Regulated Innate Immune Response
Cited by: 69
Author(s): Madeleine G. Moule, Denise M. Monack, David Schneider
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1001102

A Bistable Switch and Anatomical Site Control Vibrio cholerae Virulence Gene Expression in the Intestine
Cited by: 94
Author(s): Alex Toftgaard Nielsen, Nadia Dolganov, Thomas Høj Rasmussen, G Otto, Michael C. Miller, Stephen A. Felt, Stéphanie L Torreilles, Gary K. Schoolnik
Software Mentions: 1
Published: almost 16 years ago

10.18632/oncotarget.12362

Deregulation of the pRb-E2F4 axis alters epidermal homeostasis and favors tumor development
Cited by: 2
Author(s): Clotilde Costa, Mirentxu Santos, Mónica Martínez‐Fernández, Corina Lorz, Sara Lázaro, Jesús M. Paramio
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1003210

Candida albicans White and Opaque Cells Undergo Distinct Programs of Filamentous Growth
Cited by: 77
Author(s): Haoyu Si, Aaron D. Hernday, Matthew P. Hirakawa, Alexander D. Johnson, Richard J. Bennett
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003268

Puf Mediates Translation Repression of Transmission-Blocking Vaccine Candidates in Malaria Parasites
Cited by: 67
Author(s): Jun Miao, Qi Fan, Daniel M. Parker, Xiaolian Li, Jianyong Li, Liwang Cui
Software Mentions: 1
Published: over 13 years ago

10.1186/s12859-021-04088-6

Fast and SNP-aware short read alignment with SALT
Cited by: 0
Author(s): Wei Quan, Bo Liu, Yadong Wang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1003448

Transcriptome Analyses of Inhibitor-treated Schistosome Females Provide Evidence for Cooperating Src-kinase and TGFβ Receptor Pathways Controlling Mitosis and Eggshell Formation
Cited by: 45
Author(s): Christin Buro, Kátia C. Oliveira, Zhigang Lu, Silke Leutner, Svenja Beckmann, Colette Dissous, Kátia Cailliau, Sérgio Verjovski-Almeida, Christoph G. Grevelding
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1003445

An Extracellular Subtilase Switch for Immune Priming in Arabidopsis
Cited by: 99
Author(s): Vicente Ramírez, Ana López, Brigitte Mauch‐Mani, Ma José Gil, Pablo Vera
Software Mentions: 1
Published: about 13 years ago

10.3390/ijms18071572

Identification and Validation of New Alleles of FALSIFLORA and COMPOUND INFLORESCENCE Genes Controlling the Number of Branches in Tomato Inflorescence
Cited by: 8
Author(s): Huan Zheng, Saneyuki Kawabata
Software Mentions: 1
Published: about 9 years ago

10.1186/s12859-017-1470-x

BATVI: Fast, sensitive and accurate detection of virus integrations
Cited by: 17
Author(s): Chandana Tennakoon, Wing-Kin Sung
Software Mentions: 1
Published: over 9 years ago

10.1186/s13015-015-0062-4

HIA: a genome mapper using hybrid index-based sequence alignment
Cited by: 2
Author(s): Jongpill Choi, Kiejung Park, Seongbeom Cho, Myungguen Chung
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms19030853

Impairment of Meristem Proliferation in Plants Lacking the Mitochondrial Protease AtFTSH4
Cited by: 10
Author(s): Alicja Dołzbłasz, Edyta M. Gola, Katarzyna Sokołowska, Elwira Smakowska-Luzan, Adriana Twardawska, Hanna Janska
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-12-90

Using context to improve protein domain identification
Cited by: 32
Author(s): Alejandro Ochoa, Manuel Llinás, Mona Singh
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.ppat.1006577

Innate activation of human primary epithelial cells broadens the host response to Mycobacterium tuberculosis in the airways
Cited by: 42
Author(s): Ann-Kathrin Reuschl, Michael R. Edwards, Robert Parker, David Connell, Long Hoàng, Alice Halliday, Hannah Jarvis, Nazneen Siddiqui, C. A. Wright, Samuel Bremang, Sandra M. Newton, Peter C. L. Beverley, Robin J. Shattock, Onn Min Kon, Ajit Lalvani
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006722

Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo
Cited by: 54
Author(s): Rie Furuta, Jun-ichirou Yasunaga, Michi Miura, Kenji Sugata, Akatsuki Saito, Hirofumi Akari, Takaharu Ueno, Norihiro Takenouchi, Jun Fujisawa, Ki Ryang Koh, Yusuke Higuchi, Mohamed Mahgoub, Masakazu Shimizu, Fumihiko Matsuda, Anat Melamed, Charles R. M. Bangham, Masao Matsuoka
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007810

Cucumber mosaic virus infection as a potential selective pressure on Arabidopsis thaliana populations
Cited by: 33
Author(s): Núria Montés, Carlos Alonso‐Blanco, Fernando Garcı́a-Arenal
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-7-414

Semi-supervised discovery of differential genes
Cited by: 2
Author(s): Shigeyuki Oba, Shin lshii
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2105-11-299

poolMC: Smart pooling of mRNA samples in microarray experiments
Cited by: 35
Author(s): Raghunandan M. Kainkaryam, Angela Bruex, Anna C. Gilbert, John Schiefelbein, Peter J. Woolf
Software Mentions: 1
Published: about 16 years ago

10.1186/s13568-017-0396-z

Medium-chain-length polyhydroxyalkanoates synthesis by Pseudomonas putida KT2440 relA/spoT mutant: bioprocess characterization and transcriptome analysis
Cited by: 22
Author(s): Justyna Możejko-Ciesielska, Dorota M. Dabrowska, Agnieszka Szalewska-Pałasz, Sławomir Ciesielski
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms19092705

Characterization of the XTH Gene Family: New Insight to the Roles in Soybean Flooding Tolerance
Cited by: 41
Author(s): Li Song, Babu Valliyodan, Silvas J. Prince, Jinrong Wan, Henry T. Nguyen
Software Mentions: 1
Published: almost 8 years ago

10.1002/pmrj.12508

Understanding Changes in Physical Activity among Lower Limb Prosthesis Users: A COVID ‐19 Case Series
Cited by: 3
Author(s): Akshay S Tolani, Shane R. Wurdeman, Bryce Billing, Erin M. O’Brien, Dwiesha L. England, Phillip M. Stevens, Aaron Flores
Software Mentions: 1
Published: over 5 years ago

10.3390/polym11020307

Scanning Auger Microscopy Studies of Silane Films Grown on Plasma-Modified HOPG Surfaces
Cited by: 2
Author(s): Jade K. Taylor, Jasmine R. Wiese, Sarah L. Harmer
Software Mentions: 1
Published: over 7 years ago

10.3390/polym13091521

Endochondral Ossification Induced by Cell Transplantation of Endothelial Cells and Bone Marrow Stromal Cells with Copolymer Scaffold Using a Rat Calvarial Defect Model
Cited by: 1
Author(s): Zhe Xing, Xiaofeng Jiang, Qingzong Si, Anna Finne‐Wistrand, Bin Liu, Ying Xue, Kamal Mustafa
Software Mentions: 1
Published: about 5 years ago

10.1186/1478-7954-10-18

Sentinel site community surveillance of mortality and nutritional status in southwestern Central African Republic, 2010
Cited by: 22
Author(s): Grazia Caleo, Aly Penda Sy, Serge Balandine, Jonathan Polonsky, Pedro Pablo Palma, Rebecca F. Grais, Francesco Checchi
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.pmedr.2021.101427

The integrated screening action model (I-SAM): A theory-based approach to inform intervention development
Cited by: 13
Author(s): Kathryn A. Robb
Software Mentions: 1
Published: almost 5 years ago

10.1073/pnas.1904903116

Biosynthesis of the nitrogenase active-site cofactor precursor NifB-co in <i>Saccharomyces cerevisiae</i>
Cited by: 27
Author(s): Stefan Burén, Katelin Pratt, Xi Jiang, Yisong Guo, Emilio Jiménez-Vicente, Carlos Echavarri‐Erasun, Dennis R. Dean, Ishtiaq Saaem, D. Benjamin Gordon, Christopher A. Voigt, Luis M. Rubio
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-020-03584-5

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Cited by: 8
Author(s): Sina Majidian, Mohammad Hossein Kahaei, Dick de Ridder
Software Mentions: 1
Published: about 6 years ago

10.1107/S2059798320007603

Macromolecular crystallography beamlines at the Canadian Light Source: building on success
Cited by: 0
Author(s): Michel Fodje, K. Mundboth, Shaunivan Labiuk, Kathryn Janzen, James Gorin, Denis Spasyuk, Scott Colville, P. Grochulski
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-018-2253-8

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads
Cited by: 8
Author(s): Stefano Beretta, Murray Patterson, Tobias Marschall, Marcel Martin, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2105-9-114

Effects of dependence in high-dimensional multiple testing problems
Cited by: 197
Author(s): KI Kyung In Kim, Mark A. van de Wiel
Software Mentions: 1
Published: over 18 years ago

10.1186/1477-5956-7-2

Glycoproteomic analysis of two mouse mammary cell lines during transforming growth factor (TGF)-beta induced epithelial to mesenchymal transition
Cited by: 35
Author(s): Jonathan D. Hill, Tammy-Lynn Tremblay, Christiane Cantin, Maureen D. O’Connor-McCourt, John F. Kelly, Anne E.G. Lenferink
Software Mentions: 1
Published: over 17 years ago

10.1186/1477-5956-7-29

Large-scale analysis of protein expression changes in human keratinocytes immortalized by human papilloma virus type 16 E6 and E7 oncogenes
Cited by: 32
Author(s): Mark A. Merkley, Ellen Hildebrandt, Robert H. Podolsky, Hilal Arnouk, Daron G. Ferris, William S. Dynan, Hubert Stöppler
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2105-8-14

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation
Cited by: 47
Author(s): Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, Bas J. Wouters, Peter J.M. Hendriksen, Barend Mons, Ruud Delwel, Jan A. Kors
Software Mentions: 1
Published: over 19 years ago

10.1186/1477-5956-10-71

An antibody microarray analysis of serum cytokines in neurodegenerative Parkinsonian syndromes
Cited by: 22
Author(s): Philipp Mahlknecht, Sylvia Stemberger, Fabienne Sprenger, Johannes Michael Rainer, Eva Hametner, Rudolf Kirchmair, Christoph Grabmer, Christoph Scherfler, Gregor K. Wenning, Klaus Seppi, Werner Poewe, Markus Reindl
Software Mentions: 1
Published: over 13 years ago

10.18632/oncotarget.20253

Global gene expression profile of cerebral ischemia-reperfusion injury in rat MCAO model
Cited by: 37
Author(s): Chunmei Wang, Minghui Liu, Yanyou Pan, Bo Bai, Jing Chen
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.17924

Identification of potential long non-coding RNA biomarkers associated with the progression of colon cancer
Cited by: 16
Author(s): Jingwen Li, Handong Wang, Jun-Li Lv, Peng Han, Yanlong Liu, Binbin Cui
Software Mentions: 1
Published: about 9 years ago

10.5334/pb.340

A French Translation of the Pleasure Arousal Dominance (PAD) Semantic Differential Scale for the Measure of Affect and Drive
Cited by: 10
Author(s): Sandrine Detandt, Christophe Leys, Ariane Bazan
Software Mentions: 1
Published: over 9 years ago

10.3758/s13423-015-0991-4

On testing the strength independence assumption in retrieval-induced forgetting
Cited by: 5
Author(s): Jeroen G. W. Raaijmakers
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms19124019

Transcriptome Sequence Analysis Elaborates a Complex Defensive Mechanism of Grapevine (Vitis vinifera L.) in Response to Salt Stress
Cited by: 45
Author(s): Le Guan, Muhammad Salman Haider, Nadeem Khan, Maazullah Nasim, Songtao Jiu, Muhammad Fiaz, Xudong Zhu, Kekun Zhang, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago

10.1007/s00213-019-05314-z

Alcohol, empathy, and morality: acute effects of alcohol consumption on affective empathy and moral decision-making
Cited by: 13
Author(s): Kathryn B. Francis, Michaela Gummerum, Giorgio Ganis, Ian S. Howard, Sylvia Terbeck
Software Mentions: 1
Published: about 7 years ago

10.1017/S1368980018003282

Brain MRI and cognitive function seven years after surviving an episode of severe acute malnutrition in a cohort of Malawian children
Cited by: 19
Author(s): Natasha Lelijveld, Alhaji Alusine Jalloh, Samuel Kampondeni, Andrew Seal, Jonathan C. K. Wells, Magdalena Goyheneix, Emmanuel Chimwezi, Macpherson Mallewa, Moffat Nyirenda, Robert S. Heyderman, Marko Kerac
Software Mentions: 1
Published: over 7 years ago

10.1098/rsos.150593

The visual gamma response to faces reflects the presence of sensory evidence and not awareness of the stimulus
Cited by: 4
Author(s): Gavin Perry
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.13511

PSMC2 is up-regulated in osteosarcoma and regulates osteosarcoma cell proliferation, apoptosis and migration
Cited by: 29
Author(s): Mingzhi Song, Yong Wang, Zhen Zhang, Shouyu Wang
Software Mentions: 1
Published: over 9 years ago

Projects: cran: SAM

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning SAM 4,566