cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0168617

The C-Terminal SynMuv/DdDUF926 Domain Regulates the Function of the N-Terminal Domain of DdNKAP
Cited by: 3
Author(s): Bhagyashri D. Burgute, Vivek S. Peche, Rolf Müller, Jan Matthias, Berthold Gaßen, Ludwig M. Eichinger, Gernot Glöckner, Angelika A. Noegel
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0001664

A Specific and Rapid Neural Signature for Parental Instinct
Cited by: 220
Author(s): Morten L. Kringelbach, Annukka Lehtonen, Sarah Squire, Allison G. Harvey, Michelle G. Craske, Ian Holliday, Alexander L. Green, Tipu Z. Aziz, P. Hansen, Piers L. Cornelissen, Alan Stein
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0071025

Exposure of Clinical MRSA Heterogeneous Strains to β-Lactams Redirects Metabolism to Optimize Energy Production through the TCA Cycle
Cited by: 19
Author(s): Mignon Keaton, Roberto R. Rosato, Konrad Plata, Christopher R. Singh, Adriana E. Rosato
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-016-3297-7

Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing
Cited by: 80
Author(s): Francesca Taranto, Nunzio D’Agostino, Barbara Greco, Teodoro Cardi, Pasquale Tripodi
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0082164

Broad-Scale Phosphoprotein Profiling of Beta Adrenergic Receptor (β-AR) Signaling Reveals Novel Phosphorylation and Dephosphorylation Events
Cited by: 11
Author(s): Andrzej Chruscinski, Harvir Singh, Steven M. Chan, Paul J. Utz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0189695

Molecular analysis of stomach contents reveals important grass seeds in the winter diet of Baird's and Grasshopper sparrows, two declining grassland bird species
Cited by: 9
Author(s): Mieke Titulaer, Alicia Melgoza‐Castillo, Arvind O. Panjabi, Alejandro Sánchez-Flores, José Hugo Martínez-Guerrero, Alberto Macías‐Duarte, Jesús A. Fernández
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0040240

Host-Selective Toxins of Pyrenophora tritici-repentis Induce Common Responses Associated with Host Susceptibility
Cited by: 36
Author(s): Iovanna Pandelova, Melania Figueroa, Larry J. Wilhelm, Viola A. Manning, Aakash N. Mankaney, Todd C. Mockler, Lynda M. Ciuffetti
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0035867

Transcriptional Analysis of Arabidopsis thaliana Response to Lima Bean Volatiles
Cited by: 17
Author(s): Sufang Zhang, Jianing Wei, Le Kang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0051961

A Combined Approach for the Assessment of Cell Viability and Cell Functionality of Human Fibrochondrocytes for Use in Tissue Engineering
Cited by: 16
Author(s): Ingrid Garzón, Víctor Carriel, Ana Belén Marín-Fernández, Ana Celeste Oliveira, Juan Garrido-Gómez, Antonìo Campos, María del Carmen Sánchez-Quevedo, Miguel Alaminos
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0139165

Identification of Biomarker and Co-Regulatory Motifs in Lung Adenocarcinoma Based on Differential Interactions
Cited by: 6
Author(s): Ning Zhao, Yongjing Liu, Zhiqiang Chang, Kening Li, Rui Zhang, Yuanshuai Zhou, Fujun Qiu, Xiaole Han, Yan Xu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0003840

Pattern Recognition in Pulmonary Tuberculosis Defined by High Content Peptide Microarray Chip Analysis Representing 61 Proteins from M. tuberculosis
Cited by: 71
Author(s): Simani Gaseitsiwe, Davide Valentini, Shahnaz Mahdavifar, Isabelle Magalhaes, Daniel F. Hoft, Johannes Zerweck, Mike Schutkowski, Jan Andersson, Marie Reilly, Markus Maeurer
Software Mentions: 1
Published: over 17 years ago

10.3390/s17010082

Hyperspectral Imagery Super-Resolution by Adaptive POCS and Blur Metric
Cited by: 6
Author(s): Shaoxing Hu, Shuyu Zhang, Aiwu Zhang, Shatuo Chai
Software Mentions: 1
Published: over 9 years ago

10.3390/s17020228

Fusion of High Resolution Multispectral Imagery in Vulnerable Coastal and Land Ecosystems
Cited by: 13
Author(s): Edurne Ibarrola-Ulzurrun, Consuelo Gonzalo-Martín, Javier Marcello, Ángel García‐Pedrero, Dionisio Rodríguez-Esparragón
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0005763

Detection of Transgenerational Spermatogenic Inheritance of Adult Male Acquired CNS Gene Expression Characteristics Using a Drosophila Systems Model
Cited by: 25
Author(s): Abhay Sharma, Priyanka Singh
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0037510

Assessment Method for a Power Analysis to Identify Differentially Expressed Pathways
Cited by: 16
Author(s): Shailesh Tripathi, Frank Emmert‐Streib
Software Mentions: 1
Published: about 14 years ago

10.1186/ar3707

Specific post-translational histone modifications of neutrophil extracellular traps as immunogens and potential targets of lupus autoantibodies
Cited by: 148
Author(s): Chih Long Liu, Stephanie Tangsombatvisit, Jacob M. Rosenberg, Gil Mandelbaum, Emily C Gillespie, Or Gozani, Ash A. Alizadeh, Paul J. Utz
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0045965

MiR-145 Regulates Epithelial to Mesenchymal Transition of Breast Cancer Cells by Targeting Oct4
Cited by: 59
Author(s): Jiajia Hu, Hua Guo, Hongyan Li, Yan Liu, Jingjing Liu, Liwei Chen, Jin Zhang, Ning Zhang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0162534

Challenges of Estimating the Annual Caseload of Severe Acute Malnutrition: The Case of Niger
Cited by: 7
Author(s): Hedwig Deconinck, Anaïs A. Pesonen, Mahaman Elh Hallarou, Jean Christophe J.C. Gérard, André Briend, Philippe Donnen, Jean Macq
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0184057

The latitudinal diversity gradient in South American mammals revisited using a regional analysis approach: The importance of climate at extra-tropical latitudes and history towards the tropics
Cited by: 7
Author(s): Paula Nilda Fergnani, Adriana Ruggiero
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0111640

Patient-Based Transcriptome-Wide Analysis Identify Interferon and Ubiquination Pathways as Potential Predictors of Influenza A Disease Severity
Cited by: 18
Author(s): Long Hoàng, Thomas Tolfvenstam, Eng Eong Ooi, Chiea‐Chuen Khor, Ahmand Nazri Mohamed Naim, Eliza Xin Pei Ho, Swee Hoe Ong, Heiman Wertheim, Annette Fox, Chau Nguyen, Ngoc My Nghiem, Tuan Manh Ha, Anh Thi Tran, Paul Tambayah, Raymond Tzer Pin Lin, Chariya Sangsajja, Weerawat Manosuthi, Chareon Chuchottaworn, Piamlarp Sansayunh, Tawee Chotpitayasunondh, Piyarat Suntarattiwong, Kulkanya Chokephaibulkit, Pilaipan Puthavathana, Menno D. de Jong, Jeremy Farrar, H. Rogier van Doorn, Martin L. Hibberd
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0179865

The role of Patient Health Engagement Model (PHE-model) in affecting patient activation and medication adherence: A structural equation model
Cited by: 92
Author(s): Guendalina Graffigna, Serena Barello, Andrea Bonanomi
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-14-207

Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote
Cited by: 43
Author(s): Cameron J. Grisdale, Lisa C. Bowers, Elizabeth S. Didier, Naomi M. Fast
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0047635

Identification of a CO2 Responsive Regulon in Bordetella
Cited by: 23
Author(s): Sara E. Hester, Minghsun Lui, Tracy L. Nicholson, Daryl Nowacki, Eric T. Harvill
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0045683

Demographic Amplification of Climate Change Experienced by the Contiguous United States Population during the 20th Century
Cited by: 4
Author(s): Jason Samson, Dominique Berteaux, Brian J. McGill, Murray M. Humphries
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-5-74

Genome wide analysis of common and specific stress responses in adult drosophila melanogaster
Cited by: 170
Author(s): Fabrice Girardot, Véronique Monnier, Hervé Tricoire
Software Mentions: 1
Published: almost 22 years ago

10.1371/journal.pone.0069282

Primary Respiratory Chain Disease Causes Tissue-Specific Dysregulation of the Global Transcriptome and Nutrient-Sensing Signaling Network
Cited by: 42
Author(s): Zhe Zhang, Mai Tsukikawa, Min Peng, Erzsébet Polyák, Eiko Nakamaru‐Ogiso, Julian Ostrovsky, Shana E. McCormack, Emily Place, Colleen Clarke, Gail Reiner, Elizabeth McCormick, Eric Rappaport, Richard R. de Haas, Joseph A. Baur, Marni J. Falk
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-13-328

Burkholderia pseudomallei transcriptional adaptation in macrophages
Cited by: 42
Author(s): Sylvia Chieng, Laura Carreto, Sheila Nathan
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0118029

Comparison of Effects of p53 Null and Gain-of-Function Mutations on Salivary Tumors in MMTV-Hras Transgenic Mice
Cited by: 3
Author(s): Dadi Jiang, Catherine I. Dumur, H. Davis Massey, Viswanathan Ramakrishnan, Mark A. Subler, Jolene J. Windle
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0010267

Transcriptional Analysis of the Pre-Erythrocytic Stages of the Rodent Malaria Parasite, Plasmodium yoelii
Cited by: 20
Author(s): Calvin T. Williams, Abdu F. Azad
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0049011

Please Don't! The Automatic Extrapolation of Dangerous Intentions
Cited by: 8
Author(s): Alessia Tessari, Giovanni Ottoboni, Andrea Mazzatenta, Arcangelo Merla, Roberto Nicoletti
Software Mentions: 1
Published: over 13 years ago

10.1186/s13075-016-1113-z

A functional variant of TLR10 modifies the activity of NFkB and may help predict a worse prognosis in patients with rheumatoid arthritis
Cited by: 34
Author(s): Silvia Torices, Antonio Julià, Pedro Muñoz, Ignacio Varela, Alejandro Balsa, Sara Marsal, Antonio Fernández‐Nebro, Francisco J. Blanco, Marcos López‐Hoyos, Víctor M. Martínez‐Taboada, José L. Fernández-Luna
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0230452

Acute malnutrition recovery energy requirements based on mid-upper arm circumference: Secondary analysis of feeding program data from 5 countries, Combined Protocol for Acute Malnutrition Study (ComPAS) Stage 1
Cited by: 14
Author(s): Rachel P. Chase, Marko Kerac, Alison Grant, Mark Manary, André Briend, Charles Opondo, Jeanette Bailey
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0002293

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization
Cited by: 210
Author(s): Yann Saint-Georges, Mathilde Garcia, Thierry Delaveau, Laurent Jourdren, Stéphane Le Crom, Sophie Lemoine, Véronique Tanty, Frédéric Devaux, Claude Jacq
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0152983

Brain Cortical Thickness Differences in Adolescent Females with Substance Use Disorders
Cited by: 15
Author(s): Peter K. Boulos, Manish Dalwani, Jody Tanabe, Susan K. Mikulich‐Gilbertson, Marie T. Banich, Thomas J. Crowley, Joseph T. Sakai
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-8-220

Construction and validation of a first-generation Bordetella bronchiseptica long-oligonucleotide microarray by transcriptional profiling the Bvg regulon
Cited by: 29
Author(s): Tracy L. Nicholson
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-11-S1-S10

Transposon identification using profile HMMs
Cited by: 5
Author(s): Paul T. Edlefsen, Jun S. Liu
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-11-18

Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates
Cited by: 35
Author(s): Maëlla Gohin, Julien Bobe, Franck Chesnel
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0014049

Menin Links the Stress Response to Genome Stability in Drosophila melanogaster
Cited by: 6
Author(s): Maria Papaconstantinou, Alicia N. Pepper, Ying Wu, Dahlia Kasimer, Tim Westwood, Ana Regina Nascimento Campos, Pierre-André Bédard
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-15-432

Transcriptomics of cryophilic Saccharomyces kudriavzevii reveals the key role of gene translation efficiency in cold stress adaptations
Cited by: 36
Author(s): Jordi Tronchoni, V. Medina, José Manuel Guillamón, Amparo Querol, Roberto Pérez‐Torrado
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-6-42

A gene expression fingerprint of C. elegans embryonic motor neurons
Cited by: 113
Author(s): Rebecca Fox, Stephen E. Von Stetina, Susan J Barlow, Christian M. Shaffer, Kellen L. Olszewski, Jason H. Moore, Denis Dupuy, Marc Vidal, David M. Miller
Software Mentions: 1
Published: over 21 years ago

10.1371/journal.pone.0007315

Cancer Genomics Identifies Regulatory Gene Networks Associated with the Transition from Dysplasia to Advanced Lung Adenocarcinomas Induced by c-Raf-1
Cited by: 33
Author(s): Astrid Rohrbeck, Jürgen Borlak
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12864-019-5769-z

A high-density genetic map and QTL mapping of leaf traits and glucosinolates in Barbarea vulgaris
Cited by: 8
Author(s): Tong-jin Liu, Youjun Zhang, Niels Agerbirk, Haiping Wang, Xiaochun Wei, Jiangping Song, Hongju He, Xing‐Ming Zhao, Xiao-Hui Zhang, Xixiang Li
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0009482

Increasing Alternative Promoter Repertories Is Positively Associated with Differential Expression and Disease Susceptibility
Cited by: 14
Author(s): Song Liu
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0125171

MicroRNA-27a Contributes to Rhabdomyosarcoma Cell Proliferation by Suppressing RARA and RXRA
Cited by: 21
Author(s): Lucia Tombolan, Matteo Zampini, Silvia Casara, Elena Boldrin, Angelica Zin, Gianni Bisogno, Angelo Rosolen, Cristiano De Pittà, Gerolamo Lanfranchi
Software Mentions: 1
Published: over 11 years ago

10.1107/S205252061402126X

Structure, hydrogen bonding and thermal expansion of ammonium carbonate monohydrate
Cited by: 14
Author(s): A. Dominic Fortes, Ian G. Wood, Dario Alfè, Eduardo Hernández, Matthias J. Gutmann, Hazel A. Sparkes
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-06804-7

Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset
Cited by: 2
Author(s): Jingping Fang, Andrew Wood, Youqiang Chen, Jingjing Yue, Ray Ming
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0178485

Global transcriptome profiling identifies KLF15 and SLC25A10 as modifiers of adipocytes insulin sensitivity in obese women
Cited by: 25
Author(s): Agné Kulyté, Anna Ehrlund, Peter Arner, Ingrid Dahlman
Software Mentions: 1
Published: about 9 years ago

10.3390/s17061288

Adaptive Temporal Matched Filtering for Noise Suppression in Fiber Optic Distributed Acoustic Sensing
Cited by: 31
Author(s): İbrahim Ölçer, Ahmet Öncü
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0035553

A Unique Combination of Male Germ Cell miRNAs Coordinates Gonocyte Differentiation
Cited by: 72
Author(s): Skye C McIver, Simone J. Stanger, Danielle M. Santarelli, Shaun D. Roman, Brett Nixon, Eileen A. McLaughlin
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0038870

A Bioinformatics Filtering Strategy for Identifying Radiation Response Biomarker Candidates
Cited by: 17
Author(s): Jung Hun Oh, Harry P. Wong, Xiaowei Wang, Joseph O. Deasy
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0025357

Metabolomic Profiling from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Targeted LC/MS/MS: Application in Sarcoma
Cited by: 72
Author(s): Andrew D. Kelly, Susanne B. Breitkopf, Min Yuan, Jeffrey D. Goldsmith, Dimitrios Spentzos, John M. Asara
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0054602

DNA Damage and Transcriptional Changes in the Gills of Mytilus galloprovincialis Exposed to Nanomolar Doses of Combined Metal Salts (Cd, Cu, Hg)
Cited by: 61
Author(s): L Varotto, Stefania Domeneghetti, Umberto Rosani, Chiara Manfrin, M.P. Cajaraville, Stefano Raccanelli, Alberto Pallavicini, Paola Venier
Software Mentions: 1
Published: over 13 years ago

10.3390/s17071579

Characterization of Signal Quality Monitoring Techniques for Multipath Detection in GNSS Applications
Cited by: 22
Author(s): Ali Pirsiavash, Ali Broumandan, G. Lachapelle
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0071755

Distinct Gene Expression Signatures in Lynch Syndrome and Familial Colorectal Cancer Type X
Cited by: 30
Author(s): Mev Dominguez‐Valentin, Christina Therkildsen, Srinivas Veerla, Mats Jönsson, Inge Bernstein, Åke Borg, Mef Nilbert
Software Mentions: 1
Published: almost 13 years ago

10.3390/s17081826

Detecting Unknown Artificial Urban Surface Materials Based on Spectral Dissimilarity Analysis
Cited by: 12
Author(s): Marianne Jilge, Uta Heiden, Martin Habermeyer, André Mende, Carsten Jürgens
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0080738

Signature of Circulating MicroRNAs as Potential Biomarkers in Vulnerable Coronary Artery Disease
Cited by: 163
Author(s): Jingyi Ren, Jing Zhang, Ning Xu, Han Guan-ping, Qiang Geng, Junxian Song, Sufang Li, Jianqing Zhao, Hong Chen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0046763

Transcriptome Analysis of Quantitative Resistance-Specific Response upon Ralstonia solanacearum Infection in Tomato
Cited by: 83
Author(s): T. Ishihara, Ichiro Mitsuhara, Hideki Takahashi, Kazuhiro Nakaho
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0027384

IRF8 Governs Expression of Genes Involved in Innate and Adaptive Immunity in Human and Mouse Germinal Center B Cells
Cited by: 45
Author(s): Dong‐Mi Shin, Chang‐Hoon Lee, Herbert C. Morse
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0030168

Differential Gene Expression between African American and European American Colorectal Cancer Patients
Cited by: 79
Author(s): Biljana Jovov, Félix Araújo-Pérez, Carlie S. Sigel, Jeran K. Stratford, Amber N. McCoy, Jen Jen Yeh, Temitope O. Keku
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0020341

Identification of miRs-143 and -145 that Is Associated with Bone Metastasis of Prostate Cancer and Involved in the Regulation of EMT
Cited by: 202
Author(s): Xinsheng Peng, Wei Guo, Liu Tiejian, Xi Wang, Xiang-An Tu, Dafu Xiong, Song Chen, Yingrong Lai, Hong Du, Guangfu Chen, Guanglin Liu, Yubo Tang, Shuai Huang, Xuenong Zou
Software Mentions: 1
Published: about 15 years ago

10.3390/s18020557

An Improved Pansharpening Method for Misaligned Panchromatic and Multispectral Data
Cited by: 10
Author(s): Hui Li, Linhai Jing, Yunwei Tang, Haifeng Ding
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-016-3348-0

Transcriptome profiling reveals differential gene expression of detoxification enzymes in a hemimetabolous tobacco pest after feeding on jasmonate-silenced Nicotiana attenuata plants
Cited by: 34
Author(s): Cristina M. Crava, Christoph Brütting, Ian Thomas Baldwin
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-10-75

Exploring and dissecting genome-wide gene expression responses of Penicillium chrysogenum to phenylacetic acid consumption and penicillinG production
Cited by: 69
Author(s): Diana M. Harris, Zita A. van der Krogt, Paul Klaassen, Léonie M. Raamsdonk, Susanne Hage, M. A. Berg, Roel A. L. Bovenberg, Jack T. Pronk, Jean‐Marc Daran
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-11-495

Gene signatures in wound tissue as evidenced by molecular profiling in the chick embryo model
Cited by: 15
Author(s): Fabienne Soulet, Witold W. Kilarski, Philipp Antczak, John Herbert, Roy Bicknell, Francesco Falciani, Andréas Bikfalvi
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-7-160

Gene expression profiling of Spodoptera frugiperda hemocytes and fat body using cDNA microarray reveals polydnavirus-associated variations in lepidopteran host genes transcript levels
Cited by: 59
Author(s): Mouna Barat‐Houari, Frédérique Hilliou, Jousset Fx, Luc Sofer, Emeline Deleury, Janick Rocher, Marc Ravallec, Lionel Galibert, Pierre Delobel, René Feyereisen, Philippe Fournier, A-N Volkoff
Software Mentions: 1
Published: about 20 years ago

10.1371/journal.pone.0024595

Suppression of Breast Tumor Growth and Metastasis by an Engineered Transcription Factor
Cited by: 46
Author(s): Adriana S. Beltran, Angela Russo, Haydee Lara, Cheng Fan, Paul M. Lizardi, Pilar Blancafort
Software Mentions: 1
Published: almost 15 years ago

10.3390/s18020441

Specim IQ: Evaluation of a New, Miniaturized Handheld Hyperspectral Camera and Its Application for Plant Phenotyping and Disease Detection
Cited by: 125
Author(s): Jan Behmann, Kelvin Acebron, Dzhaner Emin, Simon Bennertz, Shizue Matsubara, Stefan Thomas, David Bohnenkamp, Matheus Thomas Kuśka, Jouni Jussila, H. Salo, Anne-Katrin Mahlein, Uwe Rascher
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-11-S3-S4

A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT
Cited by: 6
Author(s): Sudhir Chowbina, Youping Deng, Junmei Ai, Xiaogang Wu, Xin Yuan Guan, Mitchell S. Wilbanks, B. Lynn Escalon, Sharon A. Meyer, Edward J. Perkins, Jake Y. Chen
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-10-13

Reconstruction and functional analysis of altered molecular pathways in human atherosclerotic arteries
Cited by: 76
Author(s): Stefano Cagnin, Michele Biscuola, Cristina Patuzzo, Elisabetta Trabetti, Alessandra Pasquali, Paolo Laveder, Giuseppe Faggian, Mauro Iafrancesco, Alessandro Mazzucco, Pier Franco Pignatti, Gerolamo Lanfranchi
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0158991

Affective Pictures and the Open Library of Affective Foods (OLAF): Tools to Investigate Emotions toward Food in Adults
Cited by: 31
Author(s): Laura Miccoli, R. Delgado, Pedro Guerra, Francesco Versace, Sonia Rodríguez‐Ruiz, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0149982

The Economic Impact of Eradicating Peste des Petits Ruminants: A Benefit-Cost Analysis
Cited by: 77
Author(s): B. Jones, Karl M. Rich, Jeffrey C. Mariner, J. Anderson, Martyn Jeggo, Sam Thevasagayam, Yi Cai, A. R. Peters, P. L. Roeder
Software Mentions: 1
Published: over 10 years ago

10.1186/ar2771

Type I interferon receptor controls B-cell expression of nucleic acid-sensing Toll-like receptors and autoantibody production in a murine model of lupus
Cited by: 66
Author(s): Donna L Thibault, Kareem Graham, Lowen Y. Lee, Imelda Balboni, Paul J. Hertzog, Paul J. Utz
Software Mentions: 1
Published: over 17 years ago

10.3390/s18041051

Assessment of Spatiotemporal Fusion Algorithms for Planet and Worldview Images
Cited by: 33
Author(s): Chiman Kwan, Xiaolin Zhu, Feng Gao, Bryan Chou, Daniel Pérez, Li Jiang, Yuzhong Shen, Krzysztof Koperski, Giovanni Marchisio
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0019321

The Involvement of SMILE/TMTC3 in Endoplasmic Reticulum Stress Response
Cited by: 26
Author(s): Maud Racapé, Jean‐Paul Duong Van Huyen, Richard Danger, Magali Giral, Françoise Bleicher, Yohann Foucher, Annaïck Pallier, Paul Pilet, Petra Tafelmeyer, Joanna Ashton‐Chess, Emilie Dugast, Ségolène Pettré, Béatrice Charreau, Jean‐Paul Soulillou, Sophie Brouard
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0020060

Non-Parametric Change-Point Method for Differential Gene Expression Detection
Cited by: 30
Author(s): Yao Wang, Chunguo Wu, Zhaohua Ji, Bing–Hong Wang, Yanchun Liang
Software Mentions: 1
Published: about 15 years ago

10.1186/ar1501

Cited by: 137
Author(s): Dominique Baeten, Elli Kruithof, Leen De Rycke, Anemieke M Boots, Herman Mielants, Eric Veys, Filip De Keyser
Software Mentions: 1
Published: over 21 years ago

10.1371/journal.pone.0044822

Distinct Functional Patterns of Gene Promoter Hypomethylation and Hypermethylation in Cancer Genomes
Cited by: 25
Author(s): Xiaopei Shen, Zheng He, Hongdong Li, Chen Yao, Yang Zhang, Lang He, Shan Li, Jian Huang, Zheng Guo
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-14-741

mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host -parasite interaction
Cited by: 38
Author(s): Ricardo B. Leite, Massimo Milan, Alessandro Coppe, Stefania Bortoluzzi, António dos Anjos, Richard Reinhardt, Carlos Saavedra, Tomaso Patarnello, M. Leonor Cancela, Luca Bargelloni
Software Mentions: 1
Published: over 13 years ago

10.3390/s18071981

An Overview of Non-Destructive Testing Methods for Integrated Circuit Packaging Inspection
Cited by: 62
Author(s): Pouria Aryan, Santhakumar Sampath, Hoon Sohn
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-016-3162-8

Analysis of gene expression in the midgut of Bombyx mori during the larval molting stage
Cited by: 20
Author(s): Bing Yang, Weixin Huang, Jie Zhang, Qiufang Xu, Shoulin Zhu, Chenglong Zhang, Brenda T. Beerntsen, Hui Song, Erjun Ling
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0005987

Induction of Empathy by the Smell of Anxiety
Cited by: 188
Author(s): Alexander Prehn‐Kristensen, Christian D. Wiesner, Til Ole Bergmann, Stephan Wolff, Olav Jansen, H. Maximilian Mehdorn, Roman Ferstl, Bettina M. Pause
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2164-9-37

Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling
Cited by: 47
Author(s): Melinda R. Baerwald, Amy B. Welsh, Ronald P. Hedrick, Bernie May
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-8-258

EGFR associated expression profiles vary with breast tumor subtype
Cited by: 246
Author(s): Katherine A. Hoadley, Victor Weigman, Cheng Fan, Lynda R. Sawyer, Xiaping He, Melissa A. Troester, Carolyn I. Sartor, Thais Rieger-House, Philip S. Bernard, Lisa A. Carey, Charles M. Perou
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0234343

Predictors of in-hospital mortality among under-five children with severe acute malnutrition in South-Western Uganda
Cited by: 7
Author(s): Timothy Nduhukire, Daniel Atwine, Rachel Luwaga, Joseph Byonanebye
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-8-400

Innate gene repression associated with Mycobacterium bovis infection in cattle: toward a gene signature of disease
Cited by: 62
Author(s): Kieran G. Meade, Eamonn Gormley, Mairead B. Doyle, Tara Fitzsimons, Cliona O’Farrelly, Eamon Costello, Joseph Keane, Yingdong Zhao, David E. MacHugh
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pone.0154604

Manipulating the Prion Protein Gene Sequence and Expression Levels with CRISPR/Cas9
Cited by: 19
Author(s): Lech Kaczmarczyk, Ylva Mende, Branko Zevnik, Walker S. Jackson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0126070

Tn-Seq Explorer: A Tool for Analysis of High-Throughput Sequencing Data of Transposon Mutant Libraries
Cited by: 61
Author(s): Sina Solaimanpour, Felipe Sarmiento, Jan Mrázek
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0221764

Bayesian multilevel model of micro RNA levels in ovarian-cancer and healthy subjects
Cited by: 7
Author(s): Paweł Wiczling, Emilia Daghir-Wojtkowiak, Roman Kaliszan, Michał J. Markuszewski, Janusz Limon, Magdalena Koczkowska, Maciej Stukan, Alina Kuźniacka, Magdalena Ratajska
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0009730

Distinct Types of Fibrocyte Can Differentiate from Mononuclear Cells in the Presence and Absence of Serum
Cited by: 53
Author(s): S. John Curnow, Marianne Elizabeth Fairclough, Caroline Schmutz, Steve Kissane, Alastair K Denniston, Kate Nash, Christopher D. Buckley, Janet M. Lord, Mike Salmon
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0122285

The Role of HOXB9 and miR-196a in Head and Neck Squamous Cell Carcinoma
Cited by: 49
Author(s): Lav Darda, Fahad Hakami, Richard Morgan, Craig Murdoch, D Lambert, Keith D. Hunter
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0228584

The role of mobility in sexual risk behaviour and HIV acquisition among sub-Saharan African migrants residing in two European cities
Cited by: 14
Author(s): Sónia Dias, Ana Gama, Jasna Loos, Luis Roxo, Daniel Simões, Christiana Nöstlinger
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0134955

Simultaneous Hypoxia and Low Extracellular pH Suppress Overall Metabolic Rate and Protein Synthesis In Vitro
Cited by: 17
Author(s): Brita Singers Sørensen, Morten Busk, Jens Overgaard, Michael R. Horsman, Jan Alsner
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0024287

Structural Mechanism of S-Adenosyl Methionine Binding to Catechol O-Methyltransferase
Cited by: 29
Author(s): Douglas Tsao, Luda Diatchenko, Nikolay V. Dokholyan
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-14-556

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach
Cited by: 77
Author(s): Venkatramana Pegadaraju, Rick Nipper, Brent S. Hulke, Lili Qi, Quentin Schultz
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0058469

Additional Routes to Staphylococcus aureus Daptomycin Resistance as Revealed by Comparative Genome Sequencing, Transcriptional Profiling, and Phenotypic Studies
Cited by: 49
Author(s): Yang Song, Aileen Rubio, Radheshyam K. Jayaswal, Jared Silverman, Brian J. Wilkinson
Software Mentions: 1
Published: over 13 years ago

10.3390/s18124253

Design of User-Customized Negative Emotion Classifier Based on Feature Selection Using Physiological Signal Sensors
Cited by: 15
Author(s): Jee Eun Lee, Sun Kook Yoo
Software Mentions: 1
Published: over 7 years ago

10.3390/s18124186

Qualitative Dynamics of Suspended Particulate Matter in the Changjiang Estuary from Geostationary Ocean Color Images: An Empirical, Regional Modeling Approach
Cited by: 8
Author(s): Dinghui Shang, Hui Xu
Software Mentions: 1
Published: over 7 years ago

10.1186/s13075-015-0839-3

A subset of CD163+ macrophages displays mixed polarizations in discoid lupus skin
Cited by: 36
Author(s): Benjamin F. Chong, Lin Chiang Tseng, Gregory A. Hosler, Noelle Teske, Song Zhang, David R. Karp, Nancy J. Olsen, Chandra Mohan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0012243

Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis
Cited by: 31
Author(s): Felix Rückert, Gihan Dawelbait, Christof Winter, Arndt Hartmann, Axel Denz, Ole Ammerpohl, Michael Schroeder, Hans K. Schackert, Bence Sipos, Günter Klöppel, Holger Kalthoff, Hans‐Detlev Saeger, Christian Pilarsky, Robert Grützmann
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0066714

Principal Component Analysis Based Feature Extraction Approach to Identify Circulating microRNA Biomarkers
Cited by: 62
Author(s): Y-h. Taguchi, Yoshiki Murakami
Software Mentions: 1
Published: about 13 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566