cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0101297

Railway Embankments as New Habitat for Pollinators in an Agricultural Landscape
Cited by: 51
Author(s): Dawid Moroń, Piotr Skórka, Magdalena Lenda, Elżbieta Rożej-Pabijan, Marta Wantuch, Joanna Kajzer‐Bonk, Waldemar Celary, Łukasz Mielczarek, Piotr Tryjanowski
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0215077

Chromosomal genome assembly of the ethanol production strain CBS 11270 indicates a highly dynamic genome structure in the yeast species Brettanomyces bruxellensis
Cited by: 8
Author(s): Ievgeniia A. Tiukova, Mats E. Pettersson, Marc P. Hoeppner, Remi André Olsen, Max Käller, Jens Nielsen, Jacques Dainat, Henrik Lantz, Jonas Söderberg, Volkmar Passoth
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0186328

A novel, efficient method for estimating the prevalence of acute malnutrition in resource-constrained and crisis-affected settings: A simulation study
Cited by: 1
Author(s): Séverine Frison, Marko Kerac, Francesco Checchi, Jennifer M. Nicholas
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0179446

Genetic factors affecting EBV copy number in lymphoblastoid cell lines derived from the 1000 Genome Project samples
Cited by: 23
Author(s): Rajendra Mandage, Marco Telford, Juan Antonio Rodríguez, Xavier Farré, Hafid Layouni, Urko M. Marigorta, Caitlin A. Cundiff, José María Heredia-Genestar, Arcadi Navarro, Gabriel Santpere
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-6-42

A gene expression fingerprint of C. elegans embryonic motor neurons
Cited by: 113
Author(s): Rebecca Fox, Stephen E. Von Stetina, Susan J Barlow, Christian M. Shaffer, Kellen L. Olszewski, Jason H. Moore, Denis Dupuy, Marc Vidal, David M. Miller
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0145064

Patterns of Vertebrate Diversity and Protection in Brazil
Cited by: 57
Author(s): Clinton N. Jenkins, Maria Alice S. Alves, Alexandre Uezu, Mariana M. Vale
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0088868

Thiol/Redox Metabolomic Profiling Implicates GSH Dysregulation in Early Experimental Graft versus Host Disease (GVHD)
Cited by: 19
Author(s): Jung Hee Suh, Bindu Kanathezhath, Swapna Shenvi, Hua Guo, Alicia Y. Zhou, Anureet Tiwana, Frans A. Kuypers, Bruce N. Ames, Mark C. Walters
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0004017

Global Expression Profiling in Atopic Eczema Reveals Reciprocal Expression of Inflammatory and Lipid Genes
Cited by: 77
Author(s): Annika Sääf, Maria Tengvall-Linder, Howard Y. Chang, Adam S. Adler, Carl-Fredrik Wahlgren, Annika Scheynius, Magnus Nordenskjöld, Maria Bradley
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-019-5769-z

A high-density genetic map and QTL mapping of leaf traits and glucosinolates in Barbarea vulgaris
Cited by: 8
Author(s): Tong-jin Liu, Youjun Zhang, Niels Agerbirk, Haiping Wang, Xiaochun Wei, Jiangping Song, Hongju He, Xing‐Ming Zhao, Xiao-Hui Zhang, Xixiang Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0031180

Spatial Intuition in Elementary Arithmetic: A Neurocomputational Account
Cited by: 35
Author(s): Qi Chen, Tom Verguts
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0147507

Adenoviral Mediated Expression of BMP2 by Bone Marrow Stromal Cells Cultured in 3D Copolymer Scaffolds Enhances Bone Formation
Cited by: 13
Author(s): Sunita Sharma, Dipak Sapkota, Ying Xue, Yang Sun, Anna Finne‐Wistrand, Ove Bruland, Kamal Mustafa
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-020-06804-7

Genomic variation between PRSV resistant transgenic SunUp and its progenitor cultivar Sunset
Cited by: 2
Author(s): Jingping Fang, Andrew Wood, Youqiang Chen, Jingjing Yue, Ray Ming
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-016-3348-0

Transcriptome profiling reveals differential gene expression of detoxification enzymes in a hemimetabolous tobacco pest after feeding on jasmonate-silenced Nicotiana attenuata plants
Cited by: 34
Author(s): Cristina M. Crava, Christoph Brütting, Ian Thomas Baldwin
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0029965

Multidimensional Characterization and Differentiation of Neurons in the Anteroventral Cochlear Nucleus
Cited by: 32
Author(s): Marei Typlt, Bernhard Englitz, Mandy Sonntag, Susanne Dehmel, Cornelia Kopp-Scheinpflug, Rudolf Ruebsamen
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-10-75

Exploring and dissecting genome-wide gene expression responses of Penicillium chrysogenum to phenylacetic acid consumption and penicillinG production
Cited by: 69
Author(s): Diana M. Harris, Zita A. van der Krogt, Paul Klaassen, Léonie M. Raamsdonk, Susanne Hage, M. A. Berg, Roel A. L. Bovenberg, Jack T. Pronk, Jean‐Marc Daran
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0250924

The aesthetic experience of critical art: The effects of the context of an art gallery and the way of providing curatorial information
Cited by: 7
Author(s): Magdalena Szubielska, Kamil K. Imbir
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0076360

Targeted Exome Sequencing Integrated with Clinicopathological Information Reveals Novel and Rare Mutations in Atypical, Suspected and Unknown Cases of Alport Syndrome or Proteinuria
Cited by: 59
Author(s): Rajshekhar Chatterjee, Mary Hoffman, Paul Cliften, Surya V. Seshan, Helen Liapis, Sanjay Jain
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0046755

Uterine NK Cells Are Critical in Shaping DC Immunogenic Functions Compatible with Pregnancy Progression
Cited by: 45
Author(s): Irene González, Gabriela Barrientos, Nancy Freitag, Teresa Otto, Victor L. Thijssen, Petra Moschansky, Petra von Kwiatkowski, Burghard F. Klapp, Elke Winterhager, Stefan Bauersachs, Sandra M. Blois
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-11-495

Gene signatures in wound tissue as evidenced by molecular profiling in the chick embryo model
Cited by: 15
Author(s): Fabienne Soulet, Witold W. Kilarski, Philipp Antczak, John Herbert, Roy Bicknell, Francesco Falciani, Andréas Bikfalvi
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0015884

Phosphatidylserine Increases IKBKAP Levels in Familial Dysautonomia Cells
Cited by: 39
Author(s): Hadas Keren, Maya Donyo, David Zeevi, Channa Maayan, Tal Pupko, Gil Ast
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-7-160

Gene expression profiling of Spodoptera frugiperda hemocytes and fat body using cDNA microarray reveals polydnavirus-associated variations in lepidopteran host genes transcript levels
Cited by: 59
Author(s): Mouna Barat‐Houari, Frédérique Hilliou, Jousset Fx, Luc Sofer, Emeline Deleury, Janick Rocher, Marc Ravallec, Lionel Galibert, Pierre Delobel, René Feyereisen, Philippe Fournier, A-N Volkoff
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0065948

Global Transcriptomic Analysis of Human Neuroblastoma Cells in Response to Enterovirus Type 71 Infection
Cited by: 27
Author(s): Lijuan Xu, Tao Jiang, Fujun Zhang, Jianfeng Han, Juan Liu, Hui Zhao, Xiaofeng Li, Liu Ruiju, Yong-Qiang Deng, Xiaoyan Wu, Shun-Ya Zhu, E-De Qin, Cheng‐Feng Qin
Software Mentions: 1
Published: over 11 years ago

10.1089/ast.2018.1819

Recovery of Fatty Acids from Mineralogic Mars Analogs by TMAH Thermochemolysis for the Sample Analysis at Mars Wet Chemistry Experiment on the Curiosity Rover
Cited by: 30
Author(s): Amy J. Williams, J. L. Eigenbrode, Melissa Floyd, Mary Beth Wilhelm, Shane S. O’Reilly, S. S. Johnson, Kathleen L. Craft, C. A. Knudson, S. Andrejkovičová, J. M. T. Lewis, Arnaud Buch, Daniel P. Glavin, Caroline Freissinet, R. Williams, Cyril Szopa, M. Millán, Roger E. Summons, A. C. McAdam, Kathleen C. Benison, Rafael Navarro‐González, C. A. Malespin, P. R. Mahaffy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0160992

Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients
Cited by: 13
Author(s): Kiatichai Faksri, Jun Tan, Areeya Disratthakit, Eryu Xia, Therdsak Prammananan, Prapat Suriyaphol, Chiea‐Chuen Khor, Yik-Ying Teo, Rick Twee‐Hee Ong, Angkana Chaiprasert
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0049865

An Attempt at a Molecular Prediction of Metastasis in Patients with Primary Cutaneous Melanoma
Cited by: 13
Author(s): Melanie Gschaider, Friederike Neumann, Bettina Peters, F. Lenz, Michael Cibena, Malgorzata Goiser, Ingrid Wolf, Joerg Wenzel, Cornelia Mauch, Wolfgang Schreiner, Stephan N. Wagner
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0052973

Multi-Analyte Network Markers for Tumor Prognosis
Cited by: 21
Author(s): Jong-Kwang Kim, Long Gao, Kai Tan
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-020-78116-5

Poly(ADP-ribose) polymerase 1 in genome-wide expression control in Drosophila
Cited by: 8
Author(s): Guillaume Bordet, Niraj Lodhi, Danping Guo, Andrew V. Kossenkov, Adrian Tulin
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-79864-0

Application of hyperspectral remote sensing for supplementary investigation of polymetallic deposits in Huaniushan ore region, northwestern China
Cited by: 24
Author(s): Yuqing Wan, Yichun Fan, Jin Moushun
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-11-S3-S4

A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT
Cited by: 6
Author(s): Sudhir Chowbina, Youping Deng, Junmei Ai, Xiaogang Wu, Xin Yuan Guan, Mitchell S. Wilbanks, B. Lynn Escalon, Sharon A. Meyer, Edward J. Perkins, Jake Y. Chen
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0199979

Bank1 and NF-kappaB as key regulators in anti-nucleolar antibody development
Cited by: 7
Author(s): Hammoudi Alkaissi, Said Havarinasab, Jesper Bo Nielsen, Peter Söderkvist, Per Hultman
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0013073

Potential Tumor Suppressor Role for the c-Myb Oncogene in Luminal Breast Cancer
Cited by: 40
Author(s): Aaron R. Thorner, Joel S. Parker, Katherine A. Hoadley, Charles M. Perou
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0001502

The Enduring Hypoxic Response of Mycobacterium tuberculosis
Cited by: 419
Author(s): Tige R. Rustad, Maria I. Harrell, Reiling Liao, David R. Sherman
Software Mentions: 1
Published: almost 17 years ago

10.1038/s41598-020-79501-w

Population history and ecology, in addition to climate, influence human stature and body proportions
Cited by: 19
Author(s): Emma Pomeroy, Jay T. Stock, Jonathan C. K. Wells
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0182588

HspB5 correlates with poor prognosis in colorectal cancer and prompts epithelial-mesenchymal transition through ERK signaling
Cited by: 18
Author(s): Qinghua Li, Yanlan Wang, Yuexing Lai, Ping Xu, Zhiwen Yang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-10-13

Reconstruction and functional analysis of altered molecular pathways in human atherosclerotic arteries
Cited by: 76
Author(s): Stefano Cagnin, Michele Biscuola, Cristina Patuzzo, Elisabetta Trabetti, Alessandra Pasquali, Paolo Laveder, Giuseppe Faggian, Mauro Iafrancesco, Alessandro Mazzucco, Pier Franco Pignatti, Gerolamo Lanfranchi
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0139542

Pathos & Ethos: Emotions and Willingness to Pay for Tobacco Products
Cited by: 14
Author(s): Francesco Bogliacino, Cristiano Codagnone, Giuseppe Veltri, Amitav Chakravarti, Pietro Ortoleva, George Gaskell, Andriy Ivchenko, Francisco Lupiáñez-Villanueva, Francesco Mureddu, Caroline Rudisill
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-14-741

mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host -parasite interaction
Cited by: 38
Author(s): Ricardo B. Leite, Massimo Milan, Alessandro Coppe, Stefania Bortoluzzi, António dos Anjos, Richard Reinhardt, Carlos Saavedra, Tomaso Patarnello, M. Leonor Cancela, Luca Bargelloni
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0121887

Catecholamines Promote Actinobacillus pleuropneumoniae Growth by Regulating Iron Metabolism
Cited by: 14
Author(s): Lü Li, Zhaohui Chen, Weicheng Bei, Zhipeng Su, Qi Huang, Liang Zhang, Huanchun Chen, Rui Zhou
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0254940

Sports ingroup love does not make me like the sponsor’s beverage but gets me buying it
Cited by: 0
Author(s): Sara Franco, Ana María Abreu, Rui Biscaia, Sandra Gama
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0114515

Meet OLAF, a Good Friend of the IAPS! The Open Library of Affective Foods: A Tool to Investigate the Emotional Impact of Food in Adolescents
Cited by: 44
Author(s): Laura Miccoli, R. Delgado, Sonia Rodríguez‐Ruiz, Pedro Guerra, Eduardo García-Mármol, M. Carmen Fernández‐Santaella
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0046247

Selecting Biological Meaningful Environmental Dimensions of Low Discrepancy among Ranges to Predict Potential Distribution of Bean Plataspid Invasion
Cited by: 16
Author(s): Gengping Zhu, Matthew J. Petersen, Wenjun Bu
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0113925

Insights into Molecular Features of Venerupis decussata Oocytes: A Microarray-Based Study
Cited by: 5
Author(s): Marianna Pauletto, Massimo Milan, Joana Sousa, Arnaud Huvet, Sandra Joaquim, Domitília Matias, Alexandra Leitão, Tomaso Patarnello, Luca Bargelloni
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0064963

Elevational Distribution and Conservation Biogeography of Phanaeine Dung Beetles (Coleoptera: Scarabaeinae) in Bolivia
Cited by: 38
Author(s): Sebastián K. Herzog, A. Caroli Hamel‐Leigue, Trond H. Larsen, Darren J. Mann, Rodrigo W. Soria-Auza, Bruce D. Gill, W. D. Edmonds, Sacha Spector
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0027027

Testing the Water–Energy Theory on American Palms (Arecaceae) Using Geographically Weighted Regression
Cited by: 32
Author(s): Wolf L. Eiserhardt, Stine Bjorholm, Jens‐Christian Svenning, Thiago F. Rangel, Henrik Balslev
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-016-3162-8

Analysis of gene expression in the midgut of Bombyx mori during the larval molting stage
Cited by: 20
Author(s): Bing Yang, Weixin Huang, Jie Zhang, Qiufang Xu, Shoulin Zhu, Chenglong Zhang, Brenda T. Beerntsen, Hui Song, Erjun Ling
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0043571

Using Activity-Related Behavioural Features towards More Effective Automatic Stress Detection
Cited by: 68
Author(s): Dimitrios Giakoumis, Anastasios Drosou, Pietro Cipresso, Dimitrios Tzovaras, George Hassapis, Andrea Gaggioli, Giuseppe Riva
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0075012

Differentially Expressed MicroRNAs in Chondrocytes from Distinct Regions of Developing Human Cartilage
Cited by: 44
Author(s): Audrey McAlinden, Nobish Varghese, Louisa Wirthlin, Li‐Wei Chang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0201784

Genetic parameters and quantitative trait loci analysis associated with body size and timing at metamorphosis into glass eels in captive-bred Japanese eels (Anguilla japonica)
Cited by: 9
Author(s): Kazuharu Nomura, Atushi Fujiwara, Yoshiaki Iwasaki, Issei Nishiki, Aiko Matsuura, Akiyuki Ozaki, Ryusuke Sudo, Hideki Tanaka
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-81454-7

The role of dorsolateral and ventromedial prefrontal cortex in the processing of emotional dimensions
Cited by: 55
Author(s): Vahid Nejati, Reyhaneh Majdi, Mohammad Ali Salehinejad, Michael A. Nitsche
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-9-37

Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling
Cited by: 47
Author(s): Melinda R. Baerwald, Amy B. Welsh, Ronald P. Hedrick, Bernie May
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0010776

In Vivo Identification of Solar Radiation-Responsive Gene Network: Role of the p38 Stress-Dependent Kinase
Cited by: 12
Author(s): Nicolas Mouchet, H. Adamski, R. Bouvet, Sébastien Corre, Yann Courbebaisse, Éric Watier, Jean Mosser, Christophe Chesné, Marie‐Dominique Galibert
Software Mentions: 1
Published: over 14 years ago

10.1089/ast.2017.1717

The Search for Hesperian Organic Matter on Mars: Pyrolysis Studies of Sediments Rich in Sulfur and Iron
Cited by: 16
Author(s): J. M. T. Lewis, Jens Najorka, Jonathan S. Watson, M. A. Sephton
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0005805

Gene Expression in Peripheral Blood Leukocytes in Monozygotic Twins Discordant for Chronic Fatigue: No Evidence of a Biomarker
Cited by: 24
Author(s): Andrea Byrnes, Andreas Jacks, Karin Dahlman-Wright, Birgitta Evengård, Fred A. Wright, Nancy L. Pedersen, Patrick F. Sullivan
Software Mentions: 1
Published: over 15 years ago

10.1038/s41598-021-81716-4

Using machine learning improves predictions of herd-level bovine tuberculosis breakdowns in Great Britain
Cited by: 8
Author(s): K Stański, Samantha Lycett, Thibaud Porphyre, Barend Mark de Clare Bronsvoort
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-8-258

EGFR associated expression profiles vary with breast tumor subtype
Cited by: 246
Author(s): Katherine A. Hoadley, Victor Weigman, Cheng Fan, Lynda R. Sawyer, Xiaping He, Melissa A. Troester, Carolyn I. Sartor, Thais Rieger-House, Philip S. Bernard, Lisa A. Carey, Charles M. Perou
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0015590

Olfactory Stem Cells, a New Cellular Model for Studying Molecular Mechanisms Underlying Familial Dysautonomia
Cited by: 45
Author(s): Nathalie Boone, Béatrice Loriod, Aurélie Bergon, Oualid Sbai, Christine Formisano-Tréziny, Jean Gabert, Michel Khrestchatisky, Catherine Nguyen, François Féron, Felicia B. Axelrod, El Chérif Ibrahim
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0020557

Predicting Protein Folds with Fold-Specific PSSM Libraries
Cited by: 8
Author(s): Young Ki Hong, Sree V. Chintapalli, Kyung Dae Ko, Gaurav Bhardwaj, Zhenhai Zhang, Damian B. van Rossum, Randen L. Patterson
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-8-400

Innate gene repression associated with Mycobacterium bovis infection in cattle: toward a gene signature of disease
Cited by: 62
Author(s): Kieran G. Meade, Eamonn Gormley, Mairead B. Doyle, Tara Fitzsimons, Cliona O’Farrelly, Eamon Costello, Joseph Keane, Yingdong Zhao, David E. MacHugh
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0065319

The Dynamics of Soybean Leaf and Shoot Apical Meristem Transcriptome Undergoing Floral Initiation Process
Cited by: 42
Author(s): Chui Eng Wong, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0170245

Weakening self-control biases the emotional evaluation of appetitive cues
Cited by: 7
Author(s): Christian D. Wiesner, Christoph Lindner
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0057172

Autophagy and Cellular Senescence Mediated by Sox2 Suppress Malignancy of Cancer Cells
Cited by: 43
Author(s): Yong‐Yeon Cho, Dong Joon Kim, Hye Suk Lee, Chul Ho Jeong, Eun Jin Cho, Myong Ok Kim, Sun‐Sig Byun, Kun Yeong Lee, Ke Yao, Andria Carper, Alyssa Langfald, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0061296

A Beamformer Analysis of MEG Data Reveals Frontal Generators of the Musically Elicited Mismatch Negativity
Cited by: 30
Author(s): Claudia Lappe, Olaf Steinsträter, Christo Pantev
Software Mentions: 1
Published: over 11 years ago

10.1186/1475-2891-8-36

Dietary patterns in clinical subtypes of multiple sclerosis: an exploratory study
Cited by: 41
Author(s): G Ramsaransing, Sanne A. Mellema, Jacques De Keyser
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0007856

Correlating Global Gene Regulation to Angiogenesis in the Developing Chick Extra-Embryonic Vascular System
Cited by: 60
Author(s): Sophie Javerzat, Mélanie Franco, John Herbert, N. Platonova, Anne-Lise Peille, Véronique Pantesco, John De Vos, Saïd Assou, Roy Bicknell, Andréas Bikfalvi, Martin Hagedorn
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0059636

Androgen Inhibits Abdominal Fat Accumulation and Negatively Regulates the PCK1 Gene in Male Chickens
Cited by: 25
Author(s): Jinlin Duan, Fan Su, Yi Shao, Junying Li, Ling Yao, Ke Teng, Hongwei Li, Changxin Wu
Software Mentions: 1
Published: over 11 years ago

10.1186/ar3707

Specific post-translational histone modifications of neutrophil extracellular traps as immunogens and potential targets of lupus autoantibodies
Cited by: 148
Author(s): Chih Long Liu, Stephanie Tangsombatvisit, Jacob M. Rosenberg, Gil Mandelbaum, Emily C Gillespie, Or Gozani, Ash A. Alizadeh, Paul J. Utz
Software Mentions: 1
Published: almost 13 years ago

10.3390/jpm11070656

Quantitative Measurement of Breast Tumors Using Intravoxel Incoherent Motion (IVIM) MR Images
Cited by: 3
Author(s): Si-Wa Chan, Wei-Hsuan Hu, Yen-Chieh Ouyang, Hsien-Chi Su, Chia-Chieh Lin, Yung-Chieh Chang, Chia‐Chun Hsu, Kuan-Wen Chen, Chia-Chen Liu, Shu Chien
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0018613

Differential Glucose-Regulation of MicroRNAs in Pancreatic Islets of Non-Obese Type 2 Diabetes Model Goto-Kakizaki Rat
Cited by: 160
Author(s): Jonathan L.S. Esguerra, Caroline Bolmeson, Corrado Cilio, Lena Eliasson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0006213

Involvement of the Post-Transcriptional Regulator Hfq in Yersinia pestis Virulence
Cited by: 90
Author(s): Jing Geng, Yajun Song, Lei Yang, Yanyan Feng, Yefeng Qiu, Gang Li, Jingyu Guo, Yujing Bi, Yi Qu, Wang Wang, Xiaoyi Wang, Zhaobiao Guo, Ruifu Yang, Yanping Han
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0082006

ROS Stress Resets Circadian Clocks to Coordinate Pro-Survival Signals
Cited by: 81
Author(s): Teruya Tamaru, Mitsuru Hattori, Yasuharu Ninomiya, Genki Kawamura, Guillaume Varès, Kousuke Honda, Durga Prasad Mishra, Bing Wang, Ivor J. Benjamin, Paolo Sassone‐Corsi, Toshio Ozawa, Ken Takamatsu
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-14-556

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach
Cited by: 77
Author(s): Venkatramana Pegadaraju, Rick Nipper, Brent S. Hulke, Lili Qi, Quentin Schultz
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0030840

Progesterone Inhibits Epithelial-to-Mesenchymal Transition in Endometrial Cancer
Cited by: 63
Author(s): Paul H. van der Horst, Yong-Yi Wang, Ingrid Vandenput, Liesbeth C. Kühne, Patricia C. Ewing, Wilfred F. J. van IJcken, Marten van der Zee, Frédéric Amant, Curt W. Burger, Leen J. Blok
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0008189

Integrative Discovery of Epigenetically Derepressed Cancer Testis Antigens in NSCLC
Cited by: 64
Author(s): Chad A. Glazer, Ian Smith, Michael F. Ochs, Shahnaz Begum, William H. Westra, Steven S. Chang, Wenyue Sun, Sheetal Bhan, Zubair Khan, Steven A. Ahrendt, Joseph A. Califano
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0109611

The Long-HER Study: Clinical and Molecular Analysis of Patients with HER2+ Advanced Breast Cancer Who Become Long-Term Survivors with Trastuzumab-Based Therapy
Cited by: 23
Author(s): Angelo Gámez‐Pozo, Ramón María Pérez Carrión, Luis Manso, Carmen Crespo, C. Mendiola, Rocío López-Vacas, Julia Berges-Soria, Isabel Álvarez López, Mireia Margelı́, Juan Lucas Bayo Calero, Xavier Farré, Ana Santaballa, Eva Ciruelos, Renata Afonso, Juan Lao, G. Catalán, J Gallego, José Miramón López, F.J. Salvador Bofill, Manuel Ruíz-Borrego, Enrique Espinosa, Juan Ángel Fresno Vara, Pilar Zamora
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-021-83141-z

Uncertainty quantification in the radiogenomics modeling of EGFR amplification in glioblastoma
Cited by: 11
Author(s): Leland Hu, Lujia Wang, Andrea Hawkins-Daarud, Jennifer Eschbacher, Kyle Singleton, Pamela Jackson, Kamala Clark-Swanson, Chris Sereduk, Sen Peng, Panwen Wang, Junwen Wang, Leslie C. Baxter, Kris A. Smith, Gina L. Mazza, Ashley M. Stokes, Bernard R. Bendok, Richard S. Zimmerman, Chandan Krishna, Alyx Porter, Maciej M. Mrugala, Joseph M. Hoxworth, Teresa Wu, Nhan L. Tran, Kristin R. Swanson, Jing Li
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13075-016-1113-z

A functional variant of TLR10 modifies the activity of NFkB and may help predict a worse prognosis in patients with rheumatoid arthritis
Cited by: 34
Author(s): Silvia Torices, Antonio Julià, Pedro Muñoz, Ignacio Varela, Alejandro Balsa, Sara Marsal, Antonio Fernández‐Nebro, Francisco J. Blanco, Marcos López‐Hoyos, Víctor M. Martínez‐Taboada, José L. Fernández-Luna
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0031246

Potential Geographic Distribution of Brown Marmorated Stink Bug Invasion (Halyomorpha halys)
Cited by: 151
Author(s): Gengping Zhu, Wenjun Bu, Yubao Gao, Guoqing Liu
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-018-5025-y

Revealing post-transcriptional microRNA–mRNA regulations in Alzheimer’s disease through ensemble graphs
Cited by: 2
Author(s): Rubén Armañanzas
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-82727-x

Severe acute malnutrition morphological patterns in children under five
Cited by: 6
Author(s): Laura Medialdea, Barry Bogin, Mbeugué Thiam, Antonio Vargas, María Dolores Marrodán, Nicole Idohou-Dossou
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-14-628

BSTA: a targeted approach combines bulked segregant analysis with next- generation sequencing and de novo transcriptome assembly for SNP discovery in sunflower
Cited by: 41
Author(s): M. Livaja, Yu Wang, Silke Wieckhorst, Grit Haseneyer, Michael Seidel, Volker Hahn, Steven J. Knapp, Stefan Taudien, Chris‐Carolin Schön, Eva Bauer
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-11-360

Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate
Cited by: 31
Author(s): Xinkun Wang, Xiaodong Bao, Ranu Pal, Abdulbakî Agbaş, Elias K. Michaelis
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-14-597

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria
Cited by: 39
Author(s): Eric I. Sun, Semen A. Leyn, Marat D. Kazanov, Milton H. Saier, Pavel S. Novichkov, Dmitry A. Rodionov
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0043334

Spatial Genetic Structure in Natural Populations of Phragmites australis in a Mosaic of Saline Habitats in the Yellow River Delta, China
Cited by: 20
Author(s): Lexuan Gao, Shaoqing Tang, Liqiong Zhuge, Ming Nie, Zhu Zhu, Bo Li, Ji Hyun Yang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0098069

Switch in FOXA1 Status Associates with Endometrial Cancer Progression
Cited by: 22
Author(s): Ingvild L. Tangen, Camilla Krakstad, Mari K. Halle, Henrica M.J. Werner, Anne Margrete Øyan, Kanthida Kusonmano, Kjell Petersen, Karl‐Henning Kalland, Lars A. Akslen, Jone Trovik, Antoni Hurtado, Helga B. Salvesen
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-017-3723-5

A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions
Cited by: 164
Author(s): Matthew A. Conte, William J Gammerdinger, Kerry L. Bartie, David J. Penman, Thomas D. Kocher
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0022730

Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1)
Cited by: 48
Author(s): Ankit Gupta, Pruthvi Nagilla, Hai-Son Le, Coulton Bunney, Courtney Zych, Anbupalam Thalamuthu, Ziv Bar‐Joseph, Sinnakaruppan Mathavan, Velpandi Ayyavoo
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0006527

Apoptosis of CD4+CD25high T Cells in Type 1 Diabetes May Be Partially Mediated by IL-2 Deprivation
Cited by: 74
Author(s): Parthav Jailwala, Jill Waukau, Sanja Glišić, Swapan Kumar Jana, S.J. Ehlenbach, Martin J. Hessner, Ramin Alemzadeh, Shigemi Matsuyama, Purushottam W. Laud, Xujing Wang, Soumitra Ghosh
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0111589

Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae
Cited by: 4
Author(s): Sandra Mota, Neide Vieira, Sónia Barbosa, Thierry Delaveau, Claire Torchet, Agnès Le Saux, Mathilde Garcia, Ana Sofia Pereira, Sophie Lemoine, Fanny Coulpier, Xavier Darzacq, Lionel Bénard, Margarida Casal, Frédéric Devaux, Sandra Paiva
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0025195

Does Lateral Transmission Obscure Inheritance in Hunter-Gatherer Languages?
Cited by: 69
Author(s): Claire Bowern, Patience Epps, Russell D. Gray, Jane H. Hill, Keith Hunley, Patrick McConvell, Jason Zentz
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-11-98

Transcriptional profiling of Actinobacillus pleuropneumoniae during the acute phase of a natural infection in pigs
Cited by: 45
Author(s): Vincent Deslandes, Martine Denicourt, Christiane Girard, Josée Harel, John H. E. Nash, Mario Jacques
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-15-372

Optimization of linkage mapping strategy and construction of a high-density American lotus linkage map
Cited by: 17
Author(s): Qiong Zhang, Leiting Li, Robert VanBuren, Yanling Liu, Mei Yang, Liming Xu, John E. Bowers, Caihong Zhong, Yuepeng Han, Shaohua Li, Ray Ming
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0070096

Downregulation of Steroid Receptor Coactivator-2 Modulates Estrogen-Responsive Genes and Stimulates Proliferation of MCF-7 Breast Cancer Cells
Cited by: 23
Author(s): Ingvild S. Fenne, Thomas Helland, Marianne Hauglid Flågeng, Simon N. Dankel, Gunnar Mellgren
Software Mentions: 1
Published: over 11 years ago

10.1007/s00401-016-1597-2

Herpes simplex encephalitis is linked with selective mitochondrial damage; a post-mortem and in vitro study
Cited by: 18
Author(s): Małgorzata Wnęk, Lorenzo Ressel, Emanuele Ricci, Carmen Rodriguez-Martinez, Julio Cesar Villalvazo Guerrero, Zarini Ismail, Colin Smith, Anja Kipar, Beate Sodeik, Patrick F. Chinnery, Tom Solomon, Michael J. Griffiths
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0045839

Genome-Wide Expression Profiling Identifies Type 1 Interferon Response Pathways in Active Tuberculosis
Cited by: 193
Author(s): Tom H. M. Ottenhoff, Ranjeeta Hari Dass, Ninghan Yang, Mingzi M. Zhang, Hazel E. E. Wong, Edhyana Sahiratmadja, Chiea‐Chuen Khor, Bachti Alisjahbana, Reinout van Crevel, Sangkot Marzuki, Mark Seielstad, Esther van de Vosse, Martin L. Hibberd
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0076459

A SNP Based High-Density Linkage Map of Apis cerana Reveals a High Recombination Rate Similar to Apis mellifera
Cited by: 15
Author(s): Yuan Shi, Liang Sun, Huang Zhi, Xiao Wu, Yangyang Zhu, Hua Jun Zheng, Zhi Zeng
Software Mentions: 1
Published: about 11 years ago

10.1186/ar2771

Type I interferon receptor controls B-cell expression of nucleic acid-sensing Toll-like receptors and autoantibody production in a murine model of lupus
Cited by: 66
Author(s): Donna L Thibault, Kareem Graham, Lowen Y. Lee, Imelda Balboni, Paul J. Hertzog, Paul J. Utz
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-15-S10-S3

Identification of conserved and polymorphic STRs for personal genomes
Cited by: 8
Author(s): Chien‐Ming Chen, Chi Pong Sio, Yu Lu, Hao Teng Chang, Chaofang Hu, Tun‐Wen Pai
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0062909

Complex Genetic Architecture of Cardiac Disease in a Wild Type Inbred Strain of Drosophila melanogaster
Cited by: 5
Author(s): Zhi Zhang, Benjamin Hsieh, Amy R. Poe, Julie Anderson, Karen Ocorr, Greg Gibson, Rolf Bodmer
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0201742

Glial responses during epileptogenesis in Mus musculus point to potential therapeutic targets
Cited by: 19
Author(s): Georgia Kalozoumi, Olga V. Kel-Margoulis, Elizabeth Vafiadaki, David Greenberg, Hélène Bernard, Hermona Soreq, Antoine Depaulis, Despina Sanoudou
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0185281

Identification of a novel frameshift mutation in the ILDR1 gene in a UAE family, mutations review and phenotype genotype correlation
Cited by: 6
Author(s): Abdelaziz Tlili, Abdullah Fahd Al Mutery, Mona Mahfood, Walaa Kamal Eldin Mohamed, Khalid Bajou
Software Mentions: 1
Published: about 7 years ago

Projects: cran: SAM

Papers Mentioning SAM 4,566