cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0205688

Cost effectiveness of a community based prevention and treatment of acute malnutrition programme in Mumbai slums, India
Cited by: 16
Author(s): Sophie Goudet, Anuja Jayaraman, Sheila Chanani, David Osrin, Brecht Devleesschauwer, Barry Bogin, Nyovani Madise, Paula Griffiths
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0244406

3D multi-scale deep convolutional neural networks for pulmonary nodule detection
Cited by: 14
Author(s): Haixin Peng, Huacong Sun, Yanfei Guo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0052665

The Vasculome of the Mouse Brain
Cited by: 44
Author(s): Shuzhen Guo, Yiming Zhou, Chao Xing, Josephine Lok, Angel T. Som, MingMing Ning, Xunming Ji, Eng H. Lo
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-60892-9

Integrative analysis of gut microbiome and metabolites revealed novel mechanisms of intestinal Salmonella carriage in chicken
Cited by: 26
Author(s): Khin K. Z. Mon, Yuhua Zhu, Ganrea Chanthavixay, Colin Kern, Huaijun Zhou
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0159870

White Adipose Tissue Browning in the R6/2 Mouse Model of Huntington’s Disease
Cited by: 17
Author(s): Andrew C McCourt, Lovisa Jakobsson, Sara Larsson, Cecilia Holm, Sarah Piel, Eskil Elmér, Maria Björkqvist
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0069177

Elevational Gradient in Species Richness Pattern of Epigaeic Beetles and Underlying Mechanisms at East Slope of Balang Mountain in Southwestern China
Cited by: 15
Author(s): Xiubo Yu, Liang Lü, Tao Luo, Hong‐Zhang Zhou
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0130565

Cellular Adhesion Promotes Prostate Cancer Cells Escape from Dormancy
Cited by: 46
Author(s): Nazanin S. Ruppender, Sandy Larson, Bryce Lakely, Lori Kollath, Lisha G. Brown, Ilsa M. Coleman, Roger Coleman, Holly M. Nguyen, Peter S. Nelson, Eva Corey, Linda A. Snyder, Robert L. Vessella, Colm Morrissey, Hung Lam
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0170914

Prediction of Poly(A) Sites by Poly(A) Read Mapping
Cited by: 20
Author(s): Thomas Bonfert, Caroline C. Friedel
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.22495

Identification of the genetic and clinical characteristics of neuroblastomas using genome-wide analysis
Cited by: 21
Author(s): Kumiko Uryu, Riki Nishimura, Keisuke Kataoka, Yusuke Sato, Atsuko Nakazawa, Hiromichi Suzuki, Kenichi Yoshida, Masafumi Seki, Mitsuteru Hiwatari, Tomoya Isobe, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Katsuyoshi Koh, Ryoji Hanada, Akira Oka, Yasuhide Hayashi, Miki Ohira, Takehiko Kamijo, Hiroki Nagase, Tetsuya Takimoto, Tatsuro Tajiri, Akira Nakagawara, Seishi Ogawa, Junko Takita
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0187485

Sensitivity analysis of the Aquacrop and SAFYE crop models for the assessment of water limited winter wheat yield in regional scale applications
Cited by: 44
Author(s): Paolo Cosmo Silvestro, Stefano Pignatti, Hao Yang, Guijun Yang, Simone Pascucci, Fabio Castaldi, Raffaele Casa
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-7-87

Operon information improves gene expression estimation for cDNA microarrays
Cited by: 12
Author(s): Guanghua Xiao, Betsy Martinez‐Vaz, Wei Pan, Arkady B. Khodursky
Software Mentions: 1
Published: over 20 years ago

10.1186/1471-2164-8-29

Identification of rat lung-specific microRNAs by microRNA microarray: valuable discoveries for the facilitation of lung research
Cited by: 66
Author(s): Yang Wang, Tingting Weng, Deming Gou, Zhongming Chen, Narendranath Reddy Chintagari, Lin Liu
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pone.0028024

Integrating Personality Research and Animal Contest Theory: Aggressiveness in the Green Swordtail Xiphophorus helleri
Cited by: 75
Author(s): Alastair J. Wilson, Marloes de Boer, Gareth Arnott, Andrew J. Grimmer
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0094001

Plasma Metabolomic Profiling Suggests Early Indications for Predisposition to Latent Insulin Resistance in Children Conceived by ICSI
Cited by: 44
Author(s): Alexandra Gkourogianni, Ioanna Kosteria, Aristeidis G. Telonis, Alexandra Margeli, Emily Mantzou, Maria Konsta, Dimitrios Loutradis, George Mastorakos, Ioannis Papassotiriou, Maria I. Klapa, Christina Kanaka‐Gantenbein, George P. Chrousos
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0023411

Impaired Vascular Contractility and Aortic Wall Degeneration in Fibulin-4 Deficient Mice: Effect of Angiotensin II Type 1 (AT1) Receptor Blockade
Cited by: 39
Author(s): Els Moltzer, Luuk te Riet, Sigrid Swagemakers, Paula M. van Heijningen, Marcel Vermeij, Richard van Veghel, Angelique M. Bouhuizen, Joep H.M. van Esch, Stephanie Lankhorst, Natasja W. M. Ramnath, Monique C. de Waard, Dirk J. Duncker, Peter J. van der Spek, Ellen V. Rouwet, A.H. Jan Danser, Jeroen Essers
Software Mentions: 1
Published: about 15 years ago

10.18632/aging.101625

Identification of an energy metabolism-related signature associated with clinical prognosis in diffuse glioma
Cited by: 47
Author(s): Zhengui Zhou, Ruoyu Huang, Rui‐Chao Chai, Xiaohong Zhou, Zhiping Hu, Wenbiao Wang, Baoguo Chen, Lintao Deng, Yuqing Liu, Fan Wu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0097544

Patterns of Gene Expression Associated with Pten Deficiency in the Developing Inner Ear
Cited by: 11
Author(s): Hyung Jin Kim, Jihee Ryu, Hae‐Mi Woo, Samuel Sunghwan Cho, Min Kyung Sung, Sang Cheol Kim, Mi-Hyun Park, Taesung Park, Soo Kyung Koo
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0023583

How Accessible Was Information about H1N1 Flu? Literacy Assessments of CDC Guidance Documents for Different Audiences
Cited by: 16
Author(s): Lisa P. Lagassé, Rajiv N. Rimal, Katherine Clegg Smith, J. Douglas Storey, Elizabeth Rhoades, Daniel J. Barnett, Saad B. Omer, Jonathan M. Links
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0070630

Transcriptional Blood Signatures Distinguish Pulmonary Tuberculosis, Pulmonary Sarcoidosis, Pneumonias and Lung Cancers
Cited by: 233
Author(s): Chloe Bloom, Christine M. Graham, Matthew Berry, Fotini Rozakeas, Paul S. Redford, Yuanyuan Wang, Zhaohui Xu, Katalin A. Wilkinson, Robert J. Wilkinson, Y Kendrick, Gilles Devouassoux, Tristan Ferry, Makoto Miyara, Diane Bouvry, Dominique Valeyre, Guy Gorochov, Derek Blankenship, Mitra Saadatian, P. Vanhems, Huw Beynon, Rama Vancheeswaran, Melissa Wickremasinghe, Damien Chaussabel, Jacques Banchereau, Virginia Pascual, Ling-Pei Ho, Marc Lipman, Anne O’Garra
Software Mentions: 1
Published: about 13 years ago

10.18632/oncotarget.23213

Schisandrol B and schisandrin B inhibit TGFβ1-mediated NF-κB activation via a Smad-independent mechanism
Cited by: 17
Author(s): Jung Nyeo Chun, Soonbum Park, Sanghoon Lee, Jae Kyung Kim, Eun Jung Park, Min Ji Kang, Hye Kyung Kim, Jong Kwan Park, Insuk So, Ju Hong Jeon
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0053358

DNA Repair Genes: Alternative Transcription and Gene Expression at the Exon Level in Response to the DNA Damaging Agent, Ionizing Radiation
Cited by: 28
Author(s): Helen B. Forrester, Jason Li, Daniel Hovan, Alesia Ivashkevich, Carl N. Sprung
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-016-2558-9

A genome-wide expression profile analysis reveals active genes and pathways coping with phosphate starvation in soybean
Cited by: 18
Author(s): Qing Wang, Jiao Wang, Yuming Yang, Wenkai Du, Dan Zhang, Deyue Yu, Hao Cheng
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0045142

The Transcriptional Profile of Mesenchymal Stem Cell Populations in Primary Osteoporosis Is Distinct and Shows Overexpression of Osteogenic Inhibitors
Cited by: 151
Author(s): Peggy Benisch, Tatjana Schilling, Ludger Klein-Hitpaß, Sönke P. Frey, Lothar Seefried, Nadja Raaijmakers, Melanie Krug, Martina Regensburger, Sabine Zeck, Thorsten Schinke, Michael Amling, Regina Ebert, Franz Jakob
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0179684

Two sides of a coin: Effects of climate change on the native and non-native distribution of Colossoma macropomum in South America
Cited by: 16
Author(s): Taise Miranda Lopes, Dayani Bailly, Bia de Arruda Almeida, Natália Carneiro Lacerda dos Santos, Barbara Carolina Garcia Gimenez, Guilherme Okuda Landgraf, Paulo César Lima Sales, Matheus S. Lima‐Ribeiro, Fernanda A. S. Cassemiro, Thiago F. Rangel, José Alexandre Felizola Diniz‐Filho, Ângelo Antônio Agostinho, Luiz Carlos Gomes
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-63482-x

CDDO-Me Alters the Tumor Microenvironment in Estrogen Receptor Negative Breast Cancer
Cited by: 15
Author(s): Michael S. Ball, Rajan Bhandari, Gretel M. Torres, Viktor Martyanov, Mohamed ElTanbouly, Kim Archambault, Michael L. Whitfield, Karen T. Liby, Patricia A. Pioli
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0235188

Effects of the characteristic temperament of cats on the emotions and hemodynamic responses of humans
Cited by: 8
Author(s): T Nagasawa, Mitsuaki Ohta, Hidehiko Uchiyama
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0175670

Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia
Cited by: 10
Author(s): Martine J. Kallemeijn, Dick de Ridder, Joyce Schilperoord-Vermeulen, Michèle Y. van der Klift, Yorick Sandberg, Jacques J. M. van Dongen, Anton W. Langerak
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0195090

Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation sequencing strategies
Cited by: 5
Author(s): Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0172692

Differential gene expression in patients with subsyndromal symptomatic depression and major depressive disorder
Cited by: 7
Author(s): Chengqing Yang, Guoqin Hu, Zezhi Li, Qingzhong Wang, Xuemei Wang, Chen Yuan, Zuowei Wang, Hong Wu, Wei Lü, Lan Cao, Jun Chen, Yong Wang, Shunying Yu, Yimin Zhou, Zhenghui Yi, Yiru Fang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0013500

Bypass Mechanisms of the Androgen Receptor Pathway in Therapy-Resistant Prostate Cancer Cell Models
Cited by: 86
Author(s): Rute B. Marques, Natasja F. Dits, Sigrun Erkens-Schulze, Wytske M. van Weerden, Guido Jenster
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0094218

Urbanization Level and Woodland Size Are Major Drivers of Woodpecker Species Richness and Abundance
Cited by: 27
Author(s): Łukasz Myczko, Zuzanna M. Rosin, Piotr Skórka, Piotr Tryjanowski
Software Mentions: 1
Published: over 12 years ago

10.18632/oncotarget.23704

Methyl donor S-adenosylmethionine (SAM) supplementation attenuates breast cancer growth, invasion, and metastasis<i>in vivo</i>; therapeutic and chemopreventive applications
Cited by: 47
Author(s): Niaz Mahmood, David Cheishvili, Ani Arakelian, Imrana Tanvir, Haseeb Ahmed Khan, Anne-Sophie Pépin, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0019987

Cortical Processing of Swallowing in ALS Patients with Progressive Dysphagia – A Magnetoencephalographic Study
Cited by: 48
Author(s): Inga Teismann, Tobias Warnecke, Sonja Suntrup, Olaf Steinsträter, Linda M. Kronenberg, E. B. Ringelstein, Reinhard Dengler, Susanne Petri, Christo Pantev, Rainer Dziewas
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0182832

A unified censored normal regression model for qPCR differential gene expression analysis
Cited by: 6
Author(s): Peter Pipelers, Lieven Clement, Matthijs Vynck, Jan Hellemans, Jo Vandesompele, Olivier Thas
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0000323

Gene Expression Patterns in Pancreatic Tumors, Cells and Tissues
Cited by: 92
Author(s): Anson W. Lowe, Mari Olsen, Hao Ying, Sum P. Lee, Kyu Taek Lee, Xin Chen, Matt van de Rijn, Patrick O. Brown
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-9-591

Transcriptome analysis of mammary epithelial subpopulations identifies novel determinants of lineage commitment and cell fate
Cited by: 153
Author(s): Howard Kendrick, Joseph L. Regan, Fiona-Ann Magnay, Anita Grigoriadis, Costas Mitsopoulos, Marketa Zvelebil, Matthew J. Smalley
Software Mentions: 1
Published: almost 18 years ago

10.1038/s41598-020-64637-6

Detection of Tuberculosis by The Analysis of Exhaled Breath Particles with High-resolution Mass Spectrometry
Cited by: 14
Author(s): Dapeng Chen, Wayne A. Bryden, Robin Wood
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0128608

Neural Correlates of Emotional Interference in Social Anxiety Disorder
Cited by: 28
Author(s): Stephanie Boehme, Viktoria Ritter, Susan Tefikow, Ulrich Stangier, Bernhard Strauß, Wolfgang H. R. Miltner, Thomas Straube
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0022251

Examining the Effects of One- and Three-Dimensional Spatial Filtering Analyses in Magnetoencephalography
Cited by: 12
Author(s): Samuel Johnson, Garreth Prendergast, Mark Hymers, Gary Green
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2164-10-495

Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons
Cited by: 132
Author(s): Rafael Queiroz, Corinna Benz, Kurt Fellenberg, Jörg D. Hoheisel, Christine Clayton
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0083495

Systematic Identification of Core Transcription Factors Mediating Dysregulated Links Bridging Inflammatory Bowel Diseases and Colorectal Cancer
Cited by: 3
Author(s): Yun Xiao, Huihui Fan, Yunpeng Zhang, Wei Xing, Yanyan Ping, Hongying Zhao, Chaohan Xu, Yiqun Li, Li Wang, Feng Li, Jing Hu, Teng Huang, Yanling Lv, Huan Ren, Xia Li
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0002655

Genes Differentially Expressed in Conidia and Hyphae of Aspergillus fumigatus upon Exposure to Human Neutrophils
Cited by: 106
Author(s): Janyce A. Sugui, H. Stanley Kim, Kol A. Zarember, Yun C. Chang, John I. Gallin, Willian C. Nierman, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0240186

Mitochondrial genomes of stick insects (Phasmatodea) and phylogenetic considerations
Cited by: 12
Author(s): Nan Song, Xinghao Li, Risong Na
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0075619

Variant Callers for Next-Generation Sequencing Data: A Comparison Study
Cited by: 137
Author(s): Xiangtao Liu, Shizhong Han, Zuoheng Wang, Joel Gelernter, Bao Zhu Yang
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-9-98

A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy
Cited by: 21
Author(s): Xiangrong Kong, Valeria R. Mas, Kellie J. Archer
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0095415

Classifying Different Emotional States by Means of EEG-Based Functional Connectivity Patterns
Cited by: 188
Author(s): You Yun Lee, Shulan Hsieh
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2105-8-242

Improving gene set analysis of microarray data by SAM-GS
Cited by: 240
Author(s): Irina Dinu, John D. Potter, Thomas Mueller, Qi Liu, Adeniyi J. Adewale, Gian S. Jhangri, G. Einecke, Konrad S. Famulski, Philip F. Halloran, Yutaka Yasui
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0184192

Effects of proteasome inhibitor MG-132 on the parasite Schistosoma mansoni
Cited by: 12
Author(s): Enyara Rezende Morais, Kátia C. Oliveira, Renato Graciano de Paula, Alice M.M. Ornelas, Érika B. C. Moreira, Fernanda Rafacho Badoco, Lizandra G. Magalhães, Sérgio Verjovski-Almeida, Vanderlei Rodrigues
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0101967

Genetic Variability and Population Divergence in the Rare Fritillaria tubiformis subsp. moggridgei Rix (Liliaceae) as Revealed by RAPD Analysis
Cited by: 16
Author(s): Marco Mucciarelli, Diana Ferrazzini, P. Belletti
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0122444

Integrating Solid-State NMR and Computational Modeling to Investigate the Structure and Dynamics of Membrane-Associated Ghrelin
Cited by: 13
Author(s): Gerrit Vortmeier, Stephanie H. DeLuca, Sylvia Els‐Heindl, Constance Chollet, Holger A. Scheidt, Annette G. Beck‐Sickinger, Jens Meiler, Daniel Huster
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-10-141

Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling
Cited by: 61
Author(s): Liraz Levi, Irena Pekarski, Ellen Gutman, Paolo Fortina, Terry Hyslop, Jakob Biran, Berta Levavi‐Sivan, Esther Lubzens
Software Mentions: 1
Published: over 17 years ago

10.1186/s12864-018-4963-8

Gene editing in the context of an increasingly complex genome
Cited by: 9
Author(s): Kevin Blighe, Larry DeDionisio, Kathleen A. Christie, Bo Chawes, Salar Shareef, Thomais Kakouli‐Duarte, Connie Chao-Shern, Victoria Harding, Rachel S. Kelly, Leandro Castellano, Justin Stebbing, Jessica Lasky‐Su, M. Andrew Nesbit, Tara Moore
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.24072

Grade progression in urothelial carcinoma can occur with high or low mutational homology: a first-step toward tumor-specific care in initial low-grade bladder cancer
Cited by: 3
Author(s): Ralf Kittler, Christine Y. Shiang, Ryan Hutchinson, Rahul K. Kollipara, Payal Kapur, Franto Francis, Yair Lotan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0199508

Taste and odor preferences following Roux-en-Y surgery in humans
Cited by: 27
Author(s): Hannah D. Kittrell, William Graber, Evelyn Mariani, Krzysztof Czaja, A. Hajnal, Patricia M. Di Lorenzo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0241455

S-adenosyl methionine synthetase SAMS-5 mediates dietary restriction-induced longevity in Caenorhabditis elegans
Cited by: 5
Author(s): Chia Chang Chen, Chiao Yin Lim, Pin Jung Lee, Ao Lin Hsu, Tsui Ting Ching
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-6-172

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function
Cited by: 87
Author(s): Jan Kosiński, Marcin Feder, Janusz M. Bujnicki
Software Mentions: 1
Published: about 21 years ago

10.1371/journal.pone.0197372

Small molecule inhibitors and CRISPR/Cas9 mutagenesis demonstrate that SMYD2 and SMYD3 activity are dispensable for autonomous cancer cell proliferation
Cited by: 44
Author(s): Michael J. Thomenius, Jennifer Totman, Darren M. Harvey, Lorna H. Mitchell, Thomas V. Riera, Kat Cosmopoulos, Alexandra R. Grassian, Christine Klaus, Megan Foley, Elizabeth A. Admirand, Haris Jahić, Christina R. Majer, Tim J. Wigle, Suzanne L. Jacques, Jodi Gureasko, Dorothy Brach, Trupti Lingaraj, Kip A. West, Sherri Smith, Nathalie Rioux, Nigel J. Waters, Cuyue Tang, Alejandra Raimondi, Michael J. Munchhof, James E. Mills, Scott Ribich, Margaret Porter Scott, Kevin W. Kuntz, William P. Janzen, Mikel P. Moyer, J. Joshua Smith, Richard Chesworth, Robert A. Copeland, P.A. Boriack-Sjodin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0088217

pY RNA1-s2: A Highly Retina-Enriched Small RNA That Selectively Binds to Matrin 3 (Matr3)
Cited by: 16
Author(s): Fumiyoshi Yamazaki, Hyun Hee Kim, Pierre Lau, Cheol Kyu Hwang, P. Michael Iuvone, David C. Klein, Samuel Clokie
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0122483

Mapping Molecular Differences and Extracellular Matrix Gene Expression in Segmental Outflow Pathways of the Human Ocular Trabecular Meshwork
Cited by: 75
Author(s): Janice A. Vranka, Jeremy T. Bradley, Yong Yang, Kate E. Keller, Ted S. Acott
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0141979

Cytochrome P450 Oxidoreductase Influences CYP2B6 Activity in Cyclophosphamide Bioactivation
Cited by: 26
Author(s): Ibrahim El-Serafi, Parvaneh Afsharian, Ali Moshfegh, Manal M. Hassan, Ylva Terelius
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0073984

Comparative Sequence and Structure Analysis Reveals the Conservation and Diversity of Nucleotide Positions and Their Associated Tertiary Interactions in the Riboswitches
Cited by: 14
Author(s): Sri Devan Appasamy, Effirul Ikhwan Ramlan, Mohd Firdaus-Raih
Software Mentions: 1
Published: about 13 years ago

10.1038/s41598-020-66515-7

Sex differences in high-level appreciation of automobile design-evoked gamma broadband synchronization
Cited by: 4
Author(s): Regina W.Y. Wang, Tsai-Miau Ke, Shih‐Ching Chuang, I-Ning Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0039477

Bovine Polledness – An Autosomal Dominant Trait with Allelic Heterogeneity
Cited by: 111
Author(s): Ivica Međugorac, Doris Seichter, Alexander Graf, Ingolf Ruß, Helmut Blum, Karl Heinrich Göpel, Sophie Rothammer, M. Förster, Stefan Krebs
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0013596

Adaptive GDDA-BLAST: Fast and Efficient Algorithm for Protein Sequence Embedding
Cited by: 1
Author(s): Young Ki Hong, Jaewoo Kang, Dongwon Lee, Damian B. van Rossum
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-020-06896-1

Identification and distribution of gene clusters required for synthesis of sphingolipid metabolism inhibitors in diverse species of the filamentous fungus Fusarium
Cited by: 20
Author(s): Hye Seon Kim, Jessica M. Lohmar, Mark Busman, Daren W. Brown, Todd A. Naumann, Hege H. Divon, Erik Lysøe, Silvio Uhlig, Robert H. Proctor
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-021-07464-x

The transcriptomic responses of Atlantic salmon (Salmo salar) to high temperature stress alone, and in combination with moderate hypoxia
Cited by: 32
Author(s): Anne Beemelmanns, Fábio S. Zanuzzo, Xi Xue, Rebeccah M. Sandrelli, Matthew L. Rise, A. Kurt Gamperl
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0087268

Global Gene Expression Analysis Reveals a Link between NDRG1 and Vesicle Transport
Cited by: 24
Author(s): Hanne A. Askautrud, Elisabet Gjernes, Gjermund Gunnes, Marit Sletten, Douglas T. Ross, Anne Lise Børresen-Dale, Nina Iversen, Michael A. Tranulis, Eirik Frengen
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-8-451

Continuous exposure to Plasmodium results in decreased susceptibility and transcriptomic divergence of the Anopheles gambiae immune system
Cited by: 9
Author(s): Ruth Aguilar, Suchismita Das, Yuemei Dong, George Dimopoulos
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pone.0232928

Large EEG amplitude effects are highly similar across Necker cube, smiley, and abstract stimuli
Cited by: 11
Author(s): Ellen Joos, Anne Giersch, Lukas Hecker, Julia Schipp, Sven Heinrich, Ludger Tebartz van Elst, Jürgen Kornmeier
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0197082

Identification of a peptide inhibitor for the histone methyltransferase WHSC1
Cited by: 19
Author(s): Michael J. Morrison, P.A. Boriack-Sjodin, Kerren K. Swinger, Tim J. Wigle, D Sadalge, Kevin W. Kuntz, Margaret Porter Scott, William P. Janzen, Richard Chesworth, Kenneth W. Duncan, Darren M. Harvey, John W. Lampe, Lorna H. Mitchell, Robert A. Copeland
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-65705-7

A cognitive profile of multi-sensory imagery, memory and dreaming in aphantasia
Cited by: 75
Author(s): Alexei J Dawes, Rebecca Keogh, Thomas Andrillon, Joel Pearson
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0079413

Transcriptome Analysis of PPARγ Target Genes Reveals the Involvement of Lysyl Oxidase in Human Placental Cytotrophoblast Invasion
Cited by: 22
Author(s): N. Segond, Séverine A. Degrelle, Sarah Berndt, É. Clouqueur, Christine Rouault, Bruno Saubaméa, Philippe Dessen, Keith S. K. Fong, Katalin Csiszàr, Josette Badet, Danièle Évain-Brion, Thierry Fournier
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0006077

A Novel In Vitro Multiple-Stress Dormancy Model for Mycobacterium tuberculosis Generates a Lipid-Loaded, Drug-Tolerant, Dormant Pathogen
Cited by: 368
Author(s): Chirajyoti Deb, Chang-Muk Lee, Vinod S. Dubey, Jaiyanth Daniel, Bassam Abomoelak, Tatiana D. Sirakova, Santosh Pawar, Linda Rogers, Pappachan E. Kolattukudy
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0014143

Molecular Characterization of c-Abl/c-Src Kinase Inhibitors Targeted against Murine Tumour Progenitor Cells that Express Stem Cell Markers
Cited by: 18
Author(s): Thomas Kruewel, Silvia Schenone, Marco Radi, Giovanni Maga, Astrid Rohrbeck, Maurizio Botta, Jürgen Borlak
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-020-67137-9

Mapping and accuracy assessment of siltation of recharge dams using remote sensing technique
Cited by: 9
Author(s): Sankaran Rajendran, Sobhi Nasir, Khalifa Al Jabri
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0239980

Can we accurately predict where we look at paintings?
Cited by: 3
Author(s): Olivier Le Meur, Tugdual Le Pen, Rémi Cozot
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-67445-0

The mitogenome portrait of Umbria in Central Italy as depicted by contemporary inhabitants and pre-Roman remains
Cited by: 8
Author(s): Alessandra Modi, Hovirag Lancioni, Irene Cardinali, Marco Rosario Capodiferro, Nicola Rambaldi Migliore, Abir Hussein, Christina Strobl, Martin Bodner, Lisa Schnaller, Catarina Xavier, Ermanno Rizzi, Laura Bonomi Ponzi, Stefania Vai, Alessandro Raveane, Bruno Cavadas, Ornella Semino, Antonio Torroni, Anna Olivieri, Martina Lari, Luı́sa Pereira, Walther Parson, David Caramelli, Alessandro Achilli
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0065683

ToP: A Trend-of-Disease-Progression Procedure Works Well for Identifying Cancer Genes from Multi-State Cohort Gene Expression Data for Human Colorectal Cancer
Cited by: 13
Author(s): Feng-Hsiang Chung, Henry Hsin‐Chung Lee, Hoong-Chien Lee
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0033293

Functional Connectivity of Pain-Mediated Affect Regulation in Borderline Personality Disorder
Cited by: 81
Author(s): Inga Niedtfeld, Peter Kirsch, Lars Schulze, Sabine C. Herpertz, Martin Bohus, Christian Schmahl
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0219745

Severe acute malnutrition and mortality in children in the community: Comparison of indicators in a multi-country pooled analysis
Cited by: 31
Author(s): Catherine Schwinger, Michael Golden, Emmanuel Grellety, Dominique Roberfroid, Benjamin Guesdon
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-021-07870-1

Whole genome sequencing and phylogenetic analysis of six SARS-CoV-2 strains isolated during COVID-19 pandemic in Tunisia, North Africa
Cited by: 2
Author(s): Wasfi Fares, Anissa Chouikha, Kaïs Ghedira, Mariem Gdoura, Dorra Rezig, Sondès Haddad-Boubaker, Imen Ben Dhifallah, Henda Touzi, Walid Hammami, Zina Meddeb, Amel Sadraoui, Nahed Hogga, Imen Abouda, Aurélia Kwasiborski, Véronique Hourdel, Guillain Mikaty, Valérie Caro, Jean Claude Manuguerra, Nissaf Ben Alaya, Henda Triki
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-10-455

MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori)
Cited by: 46
Author(s): Shiping Liu, Liang Zhang, Qibin Li, Ping Zhao, Jun Duan, Daojun Cheng, Xiang Zhang, Qingyou Xia
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0050663

Identifying Conserved and Novel MicroRNAs in Developing Seeds of Brassica napus Using Deep Sequencing
Cited by: 59
Author(s): Ana Paula Körbes, Ronei Dorneles Machado, Frank Guzmán, Maurício Pereira Almerão, Luiz Felipe Valter de Oliveira, Guilherme Loss-Morais, Andreia Carina Turchetto‐Zolet, Alexandro Cagliari, Felipe dos Santos Maraschin, Márcia Margis‐Pinheiro, Rogério Margis
Software Mentions: 1
Published: almost 14 years ago

10.18632/oncotarget.23130

Thyroid follicular adenomas and carcinomas: molecular profiling provides evidence for a continuous evolution
Cited by: 28
Author(s): Geert Dom, Sandra Frank, Sébastien Floor, Pashalina Kehagias, Frédérick Libert, Catherine Hoang, Guy Andry, Alex Spinette, Ligia Craciun, Nicolas de Saint Aubin, Christophe Trésallet, Frédérique Tissier, Frédérique Savagner, Samira Majjaj, Ilse Gutierrez-Roelens, Étienne Marbaix, Jacques Emile Dumont, Carine Maenhaut
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0147500

Characterization of Heterogeneous Prostate Tumors in Targeted Pten Knockout Mice
Cited by: 12
Author(s): Hanneke Korsten, Angelique C. J. Ziel-van der Made, Wytske M. van Weerden, Theodorus H. van der Kwast, Jan Trapman, Petra W. van Duijn
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0250283

Metagenomic insights into mixotrophic denitrification facilitated nitrogen removal in a full-scale A2/O wastewater treatment plant
Cited by: 8
Author(s): Shulei Liu, Yasong Chen, Lin Xiao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0035425

Effects of DHA- Rich n-3 Fatty Acid Supplementation on Gene Expression in Blood Mononuclear Leukocytes: The OmegAD Study
Cited by: 74
Author(s): Inger Vedin, Tommy Cederholm, Yvonne Freund‐Levi, Hans Basun, Anita Garlind, Gerd Faxén Irving, Maria Eriksdotter, Lars‐Olof Wahlund, Ingrid Dahlman, Jan Palmblad
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0005992

Identification of Global Transcriptional Dynamics
Cited by: 16
Author(s): Eric Yang, Richard R. Almon, Debra C. DuBois, W J Jusko, Ioannis P. Androulakis
Software Mentions: 1
Published: about 17 years ago

10.1038/s41598-020-67646-7

A new island-scale tropical cyclone outlook for southwest Pacific nations and territories
Cited by: 19
Author(s): Andrew D. Magee, Andrew Lorrey, Anthony S. Kiem, Kim Colyvas
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0047537

Clinical Relevance of Loss of 11p15 in Primary and Metastatic Breast Cancer: Association with Loss of PRKCDBP Expression in Brain Metastases
Cited by: 20
Author(s): Harriet Wikman, Bettina Sielaff-Frimpong, Jolanthe Kropidlowski, Isabell Witzel, Karin Milde‐Langosch, Guido Sauter, Manfred Westphal, Katrin Lamszus, Klaus Pantel
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0001479

Genomewide Expression Analysis in Zebrafish mind bomb Alleles with Pancreas Defects of Different Severity Identifies Putative Notch Responsive Genes
Cited by: 15
Author(s): Ashok N. Hegde, Nick Chuanxin Qiu, Xuehui Qiu, Soo Yei Ho, Kenny Qi-Ye Tay, Joshy George, Felicia Ng, Kunde Ramamoorthy Govindarajan, Zhiyuan Gong, Sinnakaruppan Mathavan, Yun-Jin Jiang
Software Mentions: 1
Published: over 18 years ago

10.18632/oncotarget.23971

Genomic BCR-ABL1 breakpoint characterization by a multi-strategy approach for “personalized monitoring” of residual disease in chronic myeloid leukemia patients
Cited by: 27
Author(s): Cosimo Cumbo, Luciana Impera, Crescenzio Francesco Minervini, Paola Orsini, Luisa Anelli, Antonella Zagaria, Nicoletta Coccaro, Giuseppina Tota, Angela Minervini, Paola Casieri, Claudia Brunetti, Antonella Russo Rossi, Elisa Parciante, Giorgina Specchia, Francesco Albano
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.23976

Intrauterine hyperglycemia induces intergenerational Dlk1-Gtl2 methylation changes in mouse placenta
Cited by: 14
Author(s): Ying Jiang, Yi-Chen Yu, Guo-Hui Ding, Qian Gao, Feng Chen, Qiong Luo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0054918

A Comparison of Ku0063794, a Dual mTORC1 and mTORC2 Inhibitor, and Temsirolimus in Preclinical Renal Cell Carcinoma Models
Cited by: 53
Author(s): Hao Zhang, Dror Berel, Yanping Wang, Ping Li, Neil A. Bhowmick, Robert A. Figlin, Hyung L. Kim
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0244964

Harmonic organisation conveys both universal and culture-specific cues for emotional expression in music
Cited by: 24
Author(s): George Athanasopoulos, Tuomas Eerola, Imre Lahdelma, Μάξιμος Καλιακάτσος-Παπακώστας
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0033201

MicroRNA Expression Is Down-Regulated and Reorganized in Prefrontal Cortex of Depressed Suicide Subjects
Cited by: 270
Author(s): Neil R. Smalheiser, Giovanni Lugli, Hooriyah S. Rizavi, Vetle I. Torvik, Gustavo Turecki, Yogesh K. Dwivedi
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0154638

Correction: Centering the Organizing Center in the Arabidopsis thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization
Cited by: 0
Author(s):
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-018-5346-x

Complete chloroplast genome sequence of Betula platyphylla: gene organization, RNA editing, and comparative and phylogenetic analyses
Cited by: 32
Author(s): Sui Wang, Chuanping Yang, Xiyang Zhao, Su Chen, Guanzheng Qu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0079692

Global Transcriptome Analysis of Lactococcus garvieae Strains in Response to Temperature
Cited by: 19
Author(s): Mónica Aguado-Urda, Alicia Gibello, M. Mar Blanco, J. F. Fernández‐Garayzábal, Victoria López-Alonso, Guillermo López-Campos
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0081147

Snf2 Family Gene Distribution in Higher Plant Genomes Reveals DRD1 Expansion and Diversification in the Tomato Genome
Cited by: 10
Author(s): Joachim W. Bargsten, Adam Folta, Ľudmila Mlynárová, Jan-Peter Nap
Software Mentions: 1
Published: almost 13 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566