cran: SAM | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0222498

Using remote sensing to detect whale strandings in remote areas: The case of sei whales mass mortality in Chilean Patagonia
Cited by: 9
Author(s): Peter T. Fretwell, Jennifer A. Jackson, Mauricio J. Ulloa Encina, Vreni Häussermann, María José Pérez Álvarez, Carlos Olavarría, Carolina S. Gutstein
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0248792

Molecular epidemiology of SARS-CoV-2 in Cyprus
Cited by: 6
Author(s): Jan Richter, Pavlos Fanis, Christina Tryfonos, Dana Koptides, George Krashias, Stavros Bashiardes, Andreas Hadjisavvas, Maria A. Loizidou, Anastasis Oulas, Denise Alexandrou, Olga Kalakouta, Mihalis Ι. Panayiotidis, George M. Spyrou, Christina Christodoulou
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-14-353

Transcription analysis of the porcine alveolar macrophage response to porcine circovirus type 2
Cited by: 33
Author(s): Wentao Li, Shuqing Liu, Yang Wang, Feng Deng, Weidong Yan, Kun Yang, Huanchun Chen, Qigai He, Catherine Charreyre, Jean-Christophe Audoneet
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0169518

Positioning of Tacrolimus for the Treatment of Diabetic Nephropathy Based on Computational Network Analysis
Cited by: 6
Author(s): Constantin Aschauer, Paul Perco, Andreas Heinzel, Judith Sunzenauer, Rainer Oberbauer
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-96059-3

Numerical simulation and analysis of effects of individual differences on the field distribution in the human brain with electromagnetic pulses
Cited by: 4
Author(s): Shan Wang, Song Zhang, Huiping Li, Guozhen Guo, Xiaoli Xi
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-7-87

Operon information improves gene expression estimation for cDNA microarrays
Cited by: 12
Author(s): Guanghua Xiao, Betsy Martinez‐Vaz, Wei Pan, Arkady B. Khodursky
Software Mentions: 1
Published: over 20 years ago

10.1371/journal.pone.0148037

The Affective Slider: A Digital Self-Assessment Scale for the Measurement of Human Emotions
Cited by: 199
Author(s): Alberto Betella, Paul F. M. J. Verschure
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0139516

Re-Annotator: Annotation Pipeline for Microarray Probe Sequences
Cited by: 88
Author(s): Janine Arloth, Daniel M. Bader, Simone Röh, André Altmann
Software Mentions: 1
Published: almost 11 years ago

10.1192/pb.bp.114.050005

Mobile telephone apps in mental health practice: uses, opportunities and challenges
Cited by: 32
Author(s): Justin Marley, Saeed Farooq
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0065677

Susceptibility to DNA Damage as a Molecular Mechanism for Non-Syndromic Cleft Lip and Palate
Cited by: 36
Author(s): Gerson Shigeru Kobayashi, Lucas Alvizi, Daniele Yumi Sunaga, Philippa Francis‐West, Anna Kuta, Bruno Vinícius Pimenta Almada, Sueli Gomes Ferreira, Leonardo C. Andrade-Lima, Daniela Franco Bueno, Cássio Eduardo Raposo-Amaral, Carlos Frederico Martins Menck, Maria Rita Passos‐Bueno
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0025216

Transcriptional Activation of OsDERF1 in OsERF3 and OsAP2-39 Negatively Modulates Ethylene Synthesis and Drought Tolerance in Rice
Cited by: 129
Author(s): Ling‐Shu Wan, Jianfei Zhang, Haiwen Zhang, Zhijin Zhang, Ruidang Quan, Shirong Zhou, Rongfeng Huang
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0024259

Identification of Single- and Multiple-Class Specific Signature Genes from Gene Expression Profiles by Group Marker Index
Cited by: 12
Author(s): Yu‐Shuen Tsai, Kripamoy Aguan, Nikhil R. Pal, I‐Fang Chung
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-8-29

Identification of rat lung-specific microRNAs by microRNA microarray: valuable discoveries for the facilitation of lung research
Cited by: 66
Author(s): Yang Wang, Tingting Weng, Deming Gou, Zhongming Chen, Narendranath Reddy Chintagari, Lin Liu
Software Mentions: 1
Published: over 19 years ago

10.3758/s13414-020-02105-z

Influence of arousal on intentional binding: Impaired action binding, intact outcome binding
Cited by: 8
Author(s): Anna Render, Petra Jansen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0247440

Monitoring social distancing under various low light conditions with deep learning and a single motionless time of flight camera
Cited by: 33
Author(s): Adina Rahim, Ayesha Maqbool, Tauseef Rana
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0120917

Stromal Transcriptional Profiles Reveal Hierarchies of Anatomical Site, Serum Response and Disease and Identify Disease Specific Pathways
Cited by: 12
Author(s): Andrew Filer, Philipp Antczak, Greg Parsonage, Holly Legault, Margot O’Toole, Maggie Pearson, Andrew Thomas, Dagmar Scheel‐Toellner, Karim Raza, Christopher D. Buckley, Francesco Falciani
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0128341

Septic Shock in Advanced Age: Transcriptome Analysis Reveals Altered Molecular Signatures in Neutrophil Granulocytes
Cited by: 25
Author(s): Diogo Vieira da Silva Pellegrina, Patrícia Severino, Hermes Vieira Barbeiro, Flávia Maziero Andreghetto, Irineu Tadeu Velasco, Heraldo Possolo de Souza, Marcel Cerqueira César Machado, Eduardo M. Reis, Fabiano Pinheiro da Silva
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0028448

DNA Damage in Plant Herbarium Tissue
Cited by: 131
Author(s): Martijn Staats, Argelia Cuenca, James E. Richardson, Ria Vrielink van Ginkel, Gitte Petersen, Ole Seberg, Freek T. Bakker
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0077489

Comparative Transcriptional Profiling of 3 Murine Models of SLE Nephritis Reveals Both Unique and Shared Regulatory Networks
Cited by: 40
Author(s): Ramalingam Bethunaickan, Céline C. Berthier, Weijia Zhang, Matthias Kretzler, Anne Davidson
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0059093

Gene Expression Networks Underlying Ovarian Development in Wild Largemouth Bass (Micropterus salmoides)
Cited by: 46
Author(s): Christopher J. Martyniuk, Melinda S. Prucha, Nicholas J. Doperalski, Philipp Antczak, Kevin J. Kroll, Francesco Falciani, David S. Barber, Nancy D. Denslow
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-016-2558-9

A genome-wide expression profile analysis reveals active genes and pathways coping with phosphate starvation in soybean
Cited by: 18
Author(s): Qing Wang, Jiao Wang, Yuming Yang, Wenkai Du, Dan Zhang, Deyue Yu, Hao Cheng
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0067572

Variants in ZNRD1 Gene Predict HIV-1/AIDS Disease Progression in a Han Chinese Population in Taiwan
Cited by: 6
Author(s): Ying Lin, Yu Ching Lan, Chien Hui Hung, Ting Hsu Lin, Shaohui Huang, Chien-Chang Liao, Cheng Wen Lin, Chih Ho Lai, Ni Tien, Xiang Liu, Mao Wang Ho, Wen Kuei Chien, Jin Hua Chen, Jen Hsien Wang, Fuu Jen Tsai
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0055064

MicroRNA Expression in Alpha and Beta Cells of Human Pancreatic Islets
Cited by: 115
Author(s): Dagmar Klein, Ryosuke Misawa, Valia Bravo-Egaña, Nancy Vargas, Samuel Rosero, Julieta Piroso, Hirohito Ichii, Oliver Umland, Zhijie Jiang, Nicholas F. Tsinoremas, Camillo Ricordi, Luca Inverardi, Juan Domínguez‐Bendala, Ricardo L. Pastori
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0220810

Two distinct actin waves correlated with turns-and-runs of crawling microglia
Cited by: 7
Author(s): Tae-Seok Yang, Kwanjun Park, Jin-Sung Park, Jang-Hoon Lee, Eunpyo Choi, Jong‐Hwan Lee, Wonshik Choi, Youngwoon Choi, Kyoung J. Lee
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0124375

Annotation of the Protein Coding Regions of the Equine Genome
Cited by: 29
Author(s): Matthew S. Hestand, Theodore S. Kalbfleisch, Stephen J. Coleman, Zheng Zeng, Jinze Liu, Ludovic Orlando, James N. MacLeod
Software Mentions: 1
Published: about 11 years ago

10.18632/oncotarget.15253

CBX3 promotes colon cancer cell proliferation by CDK6 kinase-independent function during cell cycle
Cited by: 41
Author(s): Yu Fan, Haiping Li, Xiaolong Liang, Zheng Xiang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0232543

High prevalence of phenotypic pyrazinamide resistance and its association with pncA gene mutations in Mycobacterium tuberculosis isolates from Uganda
Cited by: 9
Author(s): Resty Naluyange, Gerald Mboowa, Kevin Komakech, Derrick Semugenze, David Patrick Kateete, Willy Ssengooba
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-98448-0

Visual explanations from spiking neural networks using inter-spike intervals
Cited by: 13
Author(s): Youngeun Kim, Priyadarshini Panda
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0028260

Correlation of Inter-Locus Polyglutamine Toxicity with CAG•CTG Triplet Repeat Expandability and Flanking Genomic DNA GC Content
Cited by: 16
Author(s): Colm E. Nestor, Darren G. Monckton
Software Mentions: 1
Published: over 14 years ago

10.5194/amt-11-4129-2018

CALIPSO lidar level 3 aerosol profile product: version 3 algorithm design
Cited by: 98
Author(s): Jason L. Tackett, David M. Winker, Brian Getzewich, Mark Vaughan, Stuart A. Young, Jayanta Kar
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0033174

Identification of Common Biological Pathways and Drug Targets Across Multiple Respiratory Viruses Based on Human Host Gene Expression Analysis
Cited by: 67
Author(s): Steven B. Smith, William Dampier, Aydın Tözeren, James R. Brown, Michal Magid-Slav
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0037135

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Cited by: 2,615
Author(s): Brant K. Peterson, Jesse N. Weber, Emily H. Kay, Heidi S. Fisher, Hopi E. Hoekstra
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0086619

Cyclophosphamide Alters the Gene Expression Profile in Patients Treated with High Doses Prior to Stem Cell Transplantation
Cited by: 9
Author(s): Ibrahim El-Serafi, Manuchehr Abedi‐Valugerdi, Zuzana Potácová, Parvaneh Afsharian, Jonas Mattsson, Ali Moshfegh, Manal M. Hassan
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0043615

Stream Segregation in the Perception of Sinusoidally Amplitude-Modulated Tones
Cited by: 18
Author(s): Lena‐Vanessa Dolležal, Rainer Beutelmann, Georg M. Klump
Software Mentions: 1
Published: almost 14 years ago

10.2196/10035

Mobile App Use by Primary Care Patients to Manage Their Depressive Symptoms: Qualitative Study
Cited by: 30
Author(s): Alison Pung, Susan Fletcher, Jane Gunn
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0015304

Sequencing and Bioinformatics-Based Analyses of the microRNA Transcriptome in Hepatitis B–Related Hepatocellular Carcinoma
Cited by: 69
Author(s): Yoshiaki Mizuguchi, Taketoshi Mishima, Shigeki Yokomuro, Yasuo Arima, Yutaka Kawahigashi, Kengo Shigehara, Tomohiro Kanda, Hiroshi Yoshida, Eiji Uchida, Takashi Tajiri, Toshihiro Tajima
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-9-591

Transcriptome analysis of mammary epithelial subpopulations identifies novel determinants of lineage commitment and cell fate
Cited by: 153
Author(s): Howard Kendrick, Joseph L. Regan, Fiona-Ann Magnay, Anita Grigoriadis, Costas Mitsopoulos, Marketa Zvelebil, Matthew J. Smalley
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0055614

Availability and Readability of Emergency Preparedness Materials for Deaf and Hard-of-Hearing and Older Adult Populations: Issues and Assessments
Cited by: 42
Author(s): Linda Neuhauser, Susan L. Ivey, Debbie Huang, Alina Engelman, Winston Tseng, Donna Dahrouge, Sidhanta Gurung, Melissa Kealey
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0087767

Integrated Analysis of Differential miRNA and mRNA Expression Profiles in Human Radioresistant and Radiosensitive Nasopharyngeal Carcinoma Cells
Cited by: 35
Author(s): Xinhui Li, Jia-Quan Qu, Hong Yi, Pengfei Zhang, Hongmei Yi, Xun‐Xun Wan, Qianyu He, Xu Ye, Lili Yuan, Jian Zhu, Jiaoyang Li, Zhi‐Qiang Xiao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0079120

Targeted RNA-Sequencing with Competitive Multiplex-PCR Amplicon Libraries
Cited by: 32
Author(s): Thomas M. Blomquist, Erin L. Crawford, Jennie L. Lovett, Ji‐Youn Yeo, Lauren M. Stanoszek, Albert M. Levin, Jia Li, Mi Lu, Leming Shi, Kenneth L. Muldrew, James C. Willey
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0225943

Autosomal-dominant hypotrichosis with woolly hair: Novel gene locus on chromosome 4q35.1-q35.2
Cited by: 0
Author(s): Annika E. Schlaweck, Rachid Tazi-Ahnini, Fitnat Buket Basmanav, Javed Mohungoo, Sandra M. Pasternack-Ziach, Manuel Mattheisen, Ana-Maria Oprişoreanu, Aytaj Humbatova, Sabrina Wolf, A.G. Messenger, Regina C. Betz
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0034671

Fast Homozygosity Mapping and Identification of a Zebrafish ENU-Induced Mutation by Whole-Genome Sequencing
Cited by: 40
Author(s): Marianne L. Voz, Wouter Coppieters, Isabelle Manfroid, Ariane Baudhuin, Virginie Von Berg, Carole Charlier, Dirk Meyer, Wolfgang Driever, Joseph Martial, Bernard Peers
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0001050

Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm
Cited by: 84
Author(s): Yulei Wang, Cátálin Bárbácioru, Dov Shiffman, Sriram Balasubramanian, Olga A. Iakoubova, Maryann Tranquilli, Gonzalo Albornoz, Julie Blake, Necip N. Mehmet, Dewi Ngadimo, Karen Poulter, Felix Hon-Wai Chan, Raymond R. Samaha, John A. Elefteriades
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-10-495

Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons
Cited by: 132
Author(s): Rafael Queiroz, Corinna Benz, Kurt Fellenberg, Jörg D. Hoheisel, Christine Clayton
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0037993

MEG Can Map Short and Long-Term Changes in Brain Activity following Deep Brain Stimulation for Chronic Pain
Cited by: 31
Author(s): Hossein Mohseni, Ian Probert, Christine E. Parsons, Katherine S. Young, Jonathan A. Hyam, Alan Stein, John Stein, Alexander L. Green, Tipu Z. Aziz, Morten L. Kringelbach
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0160582

The Perception of Aversiveness of Surgical Procedure Pictures Is Modulated by Personal/Occupational Relevance
Cited by: 5
Author(s): Juliana Paes, Letícia Oliveira, Mirtes Garcia Pereira, Isabel A. David, Gabriela Guerra Leal Souza, Ana Paula Barbosa Sobral, Walter Machado-Pinheiro, Izabela Mocaiber
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0021067

Activated TLR Signaling in Atherosclerosis among Women with Lower Framingham Risk Score: The Multi-Ethnic Study of Atherosclerosis
Cited by: 25
Author(s): Chiang Ching Huang, Kiang Liu, Richard M. Pope, Pan Du, Simon Lin, Nalini M. Rajamannan, Qi Huang, Nadereh Jafari, Gregory L. Burke, Wendy S. Post, Karol E. Watson, Craig W. Johnson, Martha L. Daviglus, Donald M. Lloyd‐Jones
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0088361

Transcriptional Responses of Treponema denticola to Other Oral Bacterial Species
Cited by: 16
Author(s): Juni Sarkar, Ian Howard Mchardy, Emil J. Simanian, Wenyuan Shi, Renate Lux
Software Mentions: 1
Published: over 12 years ago

10.1100/2012/428206

Applying Fuzzy Logic to Comparative Distribution Modelling: A Case Study with Two Sympatric Amphibians
Cited by: 20
Author(s): A. Márcia Barbosa, Raimundo Real
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0127146

Amplicon Sequencing of Colorectal Cancer: Variant Calling in Frozen and Formalin-Fixed Samples
Cited by: 31
Author(s): Johannes Betge, Gráinne Kerr, Thilo Miersch, Svenja Leible, Gerrit Erdmann, Christian Galata, Tianzuo Zhan, Timo Gaiser, Stefan Post, Matthias Ebert, Karoline Horisberger, Michael Boutros
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0029922

Bone Marrow-Infiltrating Human Neuroblastoma Cells Express High Levels of Calprotectin and HLA-G Proteins
Cited by: 39
Author(s): Fabio Morandi, Paola Scaruffi, Fabio Gallo, Sara Stigliani, Stefano Moretti, Stefano Bonassi, Claudio Gambini, Katia Mazzocco, Paolo Fardin, Riccardo Haupt, Giampaolo Arcamone, Vito Pistoia, Gian Paolo Tonini, Maria Valeria Corrias
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0046529

Expression and Function of PML-RARA in the Hematopoietic Progenitor Cells of Ctsg-PML-RARA Mice
Cited by: 15
Author(s): Lukas D. Wartman, John S. Welch, Geoffrey L. Uy, Jeffery M. Klco, Tamara Lamprecht, Nobish Varghese, Rakesh Nagarajan, Timothy J. Ley
Software Mentions: 1
Published: almost 14 years ago

10.1100/2012/130491

Network Analysis of Functional Genomics Data: Application to Avian Sex-Biased Gene Expression
Cited by: 3
Author(s): Oliver Frings, Judith E. Mank, Andrey Alexeyenko, Erik L. L. Sonnhammer
Software Mentions: 1
Published: over 14 years ago

10.2196/17967

The Assessment of Supportive Accountability in Adults Seeking Obesity Treatment: Psychometric Validation Study
Cited by: 7
Author(s): Karishma Chhabria, Kathryn M. Ross, Shane J. Sacco, Tricia M. Leahey
Software Mentions: 1
Published: about 6 years ago

10.1155/2014/313747

Nonlinear-Model-Based Analysis Methods for Time-Course Gene Expression Data
Cited by: 1
Author(s): Li Tian, Lizhi Liu, Fang‐Xiang Wu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0045858

Arhgef15 Promotes Retinal Angiogenesis by Mediating VEGF-Induced Cdc42 Activation and Potentiating RhoJ Inactivation in Endothelial Cells
Cited by: 41
Author(s): Sentaro Kusuhara, Yoko Fukushima, Shigetomo Fukuhara, Lars Martin Jakt, Mitsuhiro Okada, Yuri Shimizu, Masaharu Hata, Kohji Nishida, Akira Negi, Masanori Hirashima, Naoki Mochizuki, Shin‐Ichi Nishikawa, Akiyoshi Uemura
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0144708

Multi-Scale Genomic, Transcriptomic and Proteomic Analysis of Colorectal Cancer Cell Lines to Identify Novel Biomarkers
Cited by: 39
Author(s): Romina Briffa, In Hwa Um, Dana Faratian, Ying Zhou, Arran Turnbull, Simon P. Langdon, David J. Harrison
Software Mentions: 1
Published: over 10 years ago

10.1155/2014/893525

Involving Users to Improve the Collaborative Logical Framework
Cited by: 15
Author(s): Olga C. Santos, Jesús G. Boticario
Software Mentions: 1
Published: over 12 years ago

10.1155/2014/216408

Alteration of Cytokine Profiles in Uranium Miners Exposed to Long-Term Low Dose Ionizing Radiation
Cited by: 12
Author(s): Kun Li, YiShui Chen, Xiaoliang Li, Shujie Lei, Qing-Feng Chen, Jian‐Xiang Liu, Qiang Sun
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0081421

Aberrant MicroRNA Expression in Endometrial Carcinoma Using Formalin-Fixed Paraffin-Embedded (FFPE) Tissues
Cited by: 38
Author(s): Taek Sang Lee, Hye Won Jeon, Yong Beom Kim, Young A Kim, Min Ah Kim, Soon Beom Kang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0048485

Molecular Characterization of Chronic Lymphocytic Leukemia Patients with a High Number of Losses in 13q14
Cited by: 37
Author(s): Ana E. Rodríguez, José Ángel Hernández, Rocío Benito, Norma C. Gutiérrez, Juan Luis Garcı́a, María Hernández‐Sánchez, Alberto Risueño, María Eugenia Sarasquete, Encarnación Fermiñán, Rosa Fisac, Alfonso García de Coca, Guillermo Martín–Núñez, Natalia de las Heras, Isabel Recio, Oliver Gutiérrez, Javier De Las Rivas, Marcos González, Jesús M. Hernández-Rivas
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0055238

Transcriptome Analysis of Tomato Flower Pedicel Tissues Reveals Abscission Zone-Specific Modulation of Key Meristem Activity Genes
Cited by: 42
Author(s): Xiang Wang, Danmei Liu, Aili Li, Xiaofan Sun, Rongzhi Zhang, Liang Wu, Yanchun Liang, Long Mao
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0057685

Enhanced Stimulus-Induced Gamma Activity in Humans during Propofol-Induced Sedation
Cited by: 50
Author(s): Neeraj Saxena, Suresh Muthukumaraswamy, Ana Diukova, Krish Devi Singh, Judith Elizabeth Hall, Richard G. Wise
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0019081

ALMS1-Deficient Fibroblasts Over-Express Extra-Cellular Matrix Components, Display Cell Cycle Delay and Are Resistant to Apoptosis
Cited by: 56
Author(s): Elisabetta Zulato, Francesca Favaretto, Caterina Veronese, Stefano Campanaro, Jan D. Marshall, Sara Romanò, Anna Cabrelle, Gayle B. Collin, Barbara Zavan, Anna S. Belloni, Enrica Rampazzo, Jürgen Κ. Naggert, Giovanni Abatangelo, Nicola Sicolo, Pietro Maffei, Gabriella Milan, Roberto Vettor
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0156324

Dysfunctional miRNA-Mediated Regulation in Chromophobe Renal Cell Carcinoma
Cited by: 4
Author(s): Xiao-han Sun, Junying Zhang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0175970

Mutant uromodulin expression leads to altered homeostasis of the endoplasmic reticulum and activates the unfolded protein response
Cited by: 38
Author(s): Céline Schaeffer, Stefania Merella, Elena Pasqualetto, Dejan Lazarevic, Luca Rampoldi
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-9-98

A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy
Cited by: 21
Author(s): Xiangrong Kong, Valeria R. Mas, Kellie J. Archer
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0140992

Biogeographical Interpretation of Elevational Patterns of Genus Diversity of Seed Plants in Nepal
Cited by: 15
Author(s): Miao Li, Jianmeng Feng
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0037708

The Peripheral Blood Transcriptome Identifies the Presence and Extent of Disease in Idiopathic Pulmonary Fibrosis
Cited by: 78
Author(s): Ivana V. Yang, Leah G. Luna, Jennifer Cotter, Janet Talbert, Sonia M. Leach, Raven Kidd, Julia Turner, Nathan Kummer, Dolly Kervitsky, Kevin K. Brown, Kathy Boon, Marvin I. Schwarz, David A. Schwartz, Mark P. Steele
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0012106

Limited Systemic Sclerosis Patients with Pulmonary Arterial Hypertension Show Biomarkers of Inflammation and Vascular Injury
Cited by: 130
Author(s): Sarah A. Pendergrass, Everett Hayes, Giuseppina Farina, Raphaël Lemaire, Harrison W. Farber, Michael L. Whitfield, Robert Lafyatis
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-10-141

Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling
Cited by: 61
Author(s): Liraz Levi, Irena Pekarski, Ellen Gutman, Paolo Fortina, Terry Hyslop, Jakob Biran, Berta Levavi‐Sivan, Esther Lubzens
Software Mentions: 1
Published: over 17 years ago

10.1155/2014/903602

Nonlinear Quantitative Radiation Sensitivity Prediction Model Based on NCI-60 Cancer Cell Lines
Cited by: 5
Author(s): Chunying Zhang, Luc Girard, Amit Kumar Das, Chen Sun, Guangqiang Zheng, Kai Song
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0030203

Retinal Expression of Wnt-Pathway Mediated Genes in Low-Density Lipoprotein Receptor-Related Protein 5 (Lrp5) Knockout Mice
Cited by: 54
Author(s): Jing Chen, Andreas Stahl, Nathan M. Krah, Molly R. Seaward, Jean-Sebastian Joyal, Aimee M. Juan, Colman J. Hatton, Christopher M. Aderman, R. J. Dennison, Keirnan Willett, Przemysław Sapieha, Lois E.H. Smith
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0205688

Cost effectiveness of a community based prevention and treatment of acute malnutrition programme in Mumbai slums, India
Cited by: 16
Author(s): Sophie Goudet, Anuja Jayaraman, Sheila Chanani, David Osrin, Brecht Devleesschauwer, Barry Bogin, Nyovani Madise, Paula Griffiths
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0244406

3D multi-scale deep convolutional neural networks for pulmonary nodule detection
Cited by: 14
Author(s): Haixin Peng, Huacong Sun, Yanfei Guo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0052665

The Vasculome of the Mouse Brain
Cited by: 44
Author(s): Shuzhen Guo, Yiming Zhou, Chao Xing, Josephine Lok, Angel T. Som, MingMing Ning, Xunming Ji, Eng H. Lo
Software Mentions: 1
Published: over 13 years ago

10.2196/jmir.4818

Empowerment of Cancer Survivors Through Information Technology: An Integrative Review
Cited by: 90
Author(s): Wim G Groen, Wilma Kuijpers, Hester S. A. Oldenburg, Michel W. J. M. Wouters, Neil K. Aaronson, Willem H. van Harten
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0159870

White Adipose Tissue Browning in the R6/2 Mouse Model of Huntington’s Disease
Cited by: 17
Author(s): Andrew C McCourt, Lovisa Jakobsson, Sara Larsson, Cecilia Holm, Sarah Piel, Eskil Elmér, Maria Björkqvist
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0069177

Elevational Gradient in Species Richness Pattern of Epigaeic Beetles and Underlying Mechanisms at East Slope of Balang Mountain in Southwestern China
Cited by: 15
Author(s): Xiubo Yu, Liang Lü, Tao Luo, Hong‐Zhang Zhou
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0130565

Cellular Adhesion Promotes Prostate Cancer Cells Escape from Dormancy
Cited by: 46
Author(s): Nazanin S. Ruppender, Sandy Larson, Bryce Lakely, Lori Kollath, Lisha G. Brown, Ilsa M. Coleman, Roger Coleman, Holly M. Nguyen, Peter S. Nelson, Eva Corey, Linda A. Snyder, Robert L. Vessella, Colm Morrissey, Hung Lam
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0170914

Prediction of Poly(A) Sites by Poly(A) Read Mapping
Cited by: 20
Author(s): Thomas Bonfert, Caroline C. Friedel
Software Mentions: 1
Published: over 9 years ago

10.1155/2014/847930

QoS Measurement of Workflow-Based Web Service Compositions Using Colored Petri Net
Cited by: 9
Author(s): Hossein Nematzadeh, Homayun Motameni, Radziah Mohamad, Zahra Nematzadeh
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0187485

Sensitivity analysis of the Aquacrop and SAFYE crop models for the assessment of water limited winter wheat yield in regional scale applications
Cited by: 44
Author(s): Paolo Cosmo Silvestro, Stefano Pignatti, Hao Yang, Guijun Yang, Simone Pascucci, Fabio Castaldi, Raffaele Casa
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-018-4963-8

Gene editing in the context of an increasingly complex genome
Cited by: 9
Author(s): Kevin Blighe, Larry DeDionisio, Kathleen A. Christie, Bo Chawes, Salar Shareef, Thomais Kakouli‐Duarte, Connie Chao-Shern, Victoria Harding, Rachel S. Kelly, Leandro Castellano, Justin Stebbing, Jessica Lasky‐Su, M. Andrew Nesbit, Tara Moore
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-020-06896-1

Identification and distribution of gene clusters required for synthesis of sphingolipid metabolism inhibitors in diverse species of the filamentous fungus Fusarium
Cited by: 20
Author(s): Hye Seon Kim, Jessica M. Lohmar, Mark Busman, Daren W. Brown, Todd A. Naumann, Hege H. Divon, Erik Lysøe, Silvio Uhlig, Robert H. Proctor
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0028024

Integrating Personality Research and Animal Contest Theory: Aggressiveness in the Green Swordtail Xiphophorus helleri
Cited by: 75
Author(s): Alastair J. Wilson, Marloes de Boer, Gareth Arnott, Andrew J. Grimmer
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0094001

Plasma Metabolomic Profiling Suggests Early Indications for Predisposition to Latent Insulin Resistance in Children Conceived by ICSI
Cited by: 44
Author(s): Alexandra Gkourogianni, Ioanna Kosteria, Aristeidis G. Telonis, Alexandra Margeli, Emily Mantzou, Maria Konsta, Dimitrios Loutradis, George Mastorakos, Ioannis Papassotiriou, Maria I. Klapa, Christina Kanaka‐Gantenbein, George P. Chrousos
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0023411

Impaired Vascular Contractility and Aortic Wall Degeneration in Fibulin-4 Deficient Mice: Effect of Angiotensin II Type 1 (AT1) Receptor Blockade
Cited by: 39
Author(s): Els Moltzer, Luuk te Riet, Sigrid Swagemakers, Paula M. van Heijningen, Marcel Vermeij, Richard van Veghel, Angelique M. Bouhuizen, Joep H.M. van Esch, Stephanie Lankhorst, Natasja W. M. Ramnath, Monique C. de Waard, Dirk J. Duncker, Peter J. van der Spek, Ellen V. Rouwet, A.H. Jan Danser, Jeroen Essers
Software Mentions: 1
Published: almost 15 years ago

10.1155/2015/706102

Universal Keyword Classifier on Public Key Based Encrypted Multikeyword Fuzzy Search in Public Cloud
Cited by: 1
Author(s): M. Shyamala Devi, Arun Chokkalingam
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0097544

Patterns of Gene Expression Associated with Pten Deficiency in the Developing Inner Ear
Cited by: 11
Author(s): Hyung Jin Kim, Jihee Ryu, Hae‐Mi Woo, Samuel Sunghwan Cho, Min Kyung Sung, Sang Cheol Kim, Mi-Hyun Park, Taesung Park, Soo Kyung Koo
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0023583

How Accessible Was Information about H1N1 Flu? Literacy Assessments of CDC Guidance Documents for Different Audiences
Cited by: 16
Author(s): Lisa P. Lagassé, Rajiv N. Rimal, Katherine Clegg Smith, J. Douglas Storey, Elizabeth Rhoades, Daniel J. Barnett, Saad B. Omer, Jonathan M. Links
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0070630

Transcriptional Blood Signatures Distinguish Pulmonary Tuberculosis, Pulmonary Sarcoidosis, Pneumonias and Lung Cancers
Cited by: 233
Author(s): Chloe Bloom, Christine M. Graham, Matthew Berry, Fotini Rozakeas, Paul S. Redford, Yuanyuan Wang, Zhaohui Xu, Katalin A. Wilkinson, Robert J. Wilkinson, Y Kendrick, Gilles Devouassoux, Tristan Ferry, Makoto Miyara, Diane Bouvry, Dominique Valeyre, Guy Gorochov, Derek Blankenship, Mitra Saadatian, P. Vanhems, Huw Beynon, Rama Vancheeswaran, Melissa Wickremasinghe, Damien Chaussabel, Jacques Banchereau, Virginia Pascual, Ling-Pei Ho, Marc Lipman, Anne O’Garra
Software Mentions: 1
Published: almost 13 years ago

10.1155/2013/854643

Evaluative Conditioning with Facial Stimuli in Dementia Patients
Cited by: 1
Author(s): Andreas Blessing, Jacqueline Zöllig, Roland Weierstall, Gerhard Dammann, Mike Martin
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0053358

DNA Repair Genes: Alternative Transcription and Gene Expression at the Exon Level in Response to the DNA Damaging Agent, Ionizing Radiation
Cited by: 28
Author(s): Helen B. Forrester, Jason Li, Daniel Hovan, Alesia Ivashkevich, Carl N. Sprung
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-021-07464-x

The transcriptomic responses of Atlantic salmon (Salmo salar) to high temperature stress alone, and in combination with moderate hypoxia
Cited by: 32
Author(s): Anne Beemelmanns, Fábio S. Zanuzzo, Xi Xue, Rebeccah M. Sandrelli, Matthew L. Rise, A. Kurt Gamperl
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0045142

The Transcriptional Profile of Mesenchymal Stem Cell Populations in Primary Osteoporosis Is Distinct and Shows Overexpression of Osteogenic Inhibitors
Cited by: 151
Author(s): Peggy Benisch, Tatjana Schilling, Ludger Klein-Hitpaß, Sönke P. Frey, Lothar Seefried, Nadja Raaijmakers, Melanie Krug, Martina Regensburger, Sabine Zeck, Thorsten Schinke, Michael Amling, Regina Ebert, Franz Jakob
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0179684

Two sides of a coin: Effects of climate change on the native and non-native distribution of Colossoma macropomum in South America
Cited by: 16
Author(s): Taise Miranda Lopes, Dayani Bailly, Bia de Arruda Almeida, Natália Carneiro Lacerda dos Santos, Barbara Carolina Garcia Gimenez, Guilherme Okuda Landgraf, Paulo César Lima Sales, Matheus S. Lima‐Ribeiro, Fernanda A. S. Cassemiro, Thiago F. Rangel, José Alexandre Felizola Diniz‐Filho, Ângelo Antônio Agostinho, Luiz Carlos Gomes
Software Mentions: 1
Published: about 9 years ago

10.1186/s12984-020-00711-4

Technology for monitoring everyday prosthesis use: a systematic review
Cited by: 46
Author(s): Alix Chadwell, Laura Diment, M. Encarna Micó-Amigo, Dafne Zuleima Morgado Ramírez, Alexander Dickinson, Malcolm Granat, Laurence Kenney, Sisary Kheng, Mohammad Sobuh, Robert T. Ssekitoleko, Peter Worsley
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0235188

Effects of the characteristic temperament of cats on the emotions and hemodynamic responses of humans
Cited by: 8
Author(s): T Nagasawa, Mitsuaki Ohta, Hidehiko Uchiyama
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0175670

Dysregulated signaling, proliferation and apoptosis impact on the pathogenesis of TCRγδ+ T cell large granular lymphocyte leukemia
Cited by: 10
Author(s): Martine J. Kallemeijn, Dick de Ridder, Joyce Schilperoord-Vermeulen, Michèle Y. van der Klift, Yorick Sandberg, Jacques J. M. van Dongen, Anton W. Langerak
Software Mentions: 1
Published: over 9 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566