cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1472-6750-7-57

Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
Cited by: 79
Author(s): Karol L. Thompson, P. Scott Pine, Barry A. Rosenzweig, Yaron Turpaz, Jacques D. Retief
Software Mentions: 1
Published: almost 18 years ago

10.1186/2046-1682-5-4

APM_GUI: analyzing particle movement on the cell membrane and determining confinement
Cited by: 12
Author(s): Silvia Adriana Menchón, María Julia Martín, Carlos G. Dotti
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12915-015-0189-2

Using mathematical models to understand metabolism, genes, and disease
Cited by: 28
Author(s): H. Frederik Nijhout, Janet Best, Michael C. Reed
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-8-371

Extended analysis of benchmark datasets for Agilent two-color microarrays
Cited by: 17
Author(s): Kathleen F. Kerr
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2105-14-325

Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
Cited by: 14
Author(s): Kris A. Christensen, Joseph P. Brunelli, Matthew J Lambert, Jenefer DeKoning, Ruth B. Phillips, Gary H. Thorgaard
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-10-55

Assessing and selecting gene expression signals based upon the quality of the measured dynamics
Cited by: 0
Author(s): Eric Yang, Ioannis P. Androulakis
Software Mentions: 1
Published: almost 16 years ago

10.1107/S2052520615006824

Structure of magnesium selenate enneahydrate, MgSeO<sub>4</sub>·9H<sub>2</sub>O, from 5 to 250 K using neutron time-of-flight Laue diffraction
Cited by: 4
Author(s): A. Dominic Fortes, Dario Alfè, Eduardo Hernández, Matthias J. Gutmann
Software Mentions: 1
Published: over 9 years ago

10.2196/10035

Mobile App Use by Primary Care Patients to Manage Their Depressive Symptoms: Qualitative Study
Cited by: 30
Author(s): Alison Pung, Susan Fletcher, Jane Gunn
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-8-347

A unified framework for finding differentially expressed genes from microarray experiments
Cited by: 17
Author(s): Jahangheer Shaik, Mohammed Yeasin
Software Mentions: 1
Published: about 17 years ago

10.2196/17967

The Assessment of Supportive Accountability in Adults Seeking Obesity Treatment: Psychometric Validation Study
Cited by: 7
Author(s): Karishma Chhabria, Kathryn M. Ross, Shane J. Sacco, Tricia M. Leahey
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-15-252

Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling information
Cited by: 9
Author(s): Xin Deng, Jianlin Cheng
Software Mentions: 1
Published: over 10 years ago

10.1186/s12859-014-0348-4

SummonChimera infers integrated viral genomes with nucleotide precision from NGS data
Cited by: 16
Author(s): Joshua P. Katz, James M. Pipas
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-8-256

HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments
Cited by: 14
Author(s): Hongya Zhao, Hong Yan
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2105-8-S1-S5

Cross platform microarray analysis for robust identification of differentially expressed genes
Cited by: 60
Author(s): Roberta Bosotti, Giuseppe Locatelli, Sandra Healy, Emanuela Scacheri, Luca Sartori, Ciro Mercurio, Raffaele Calogero, Antonella Isacchi
Software Mentions: 1
Published: over 17 years ago

10.2196/jmir.4818

Empowerment of Cancer Survivors Through Information Technology: An Integrative Review
Cited by: 90
Author(s): Wim G Groen, Wilma Kuijpers, Hester S. A. Oldenburg, Michel W. J. M. Wouters, Neil K. Aaronson, Willem H. van Harten
Software Mentions: 1
Published: about 9 years ago

10.1186/s12859-015-0628-7

Light-weight reference-based compression of FASTQ data
Cited by: 33
Author(s): Yongpeng Zhang, Linsen Li, Yanli Yang, Xiao Yang, Shan He, Zexuan Zhu
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-7-305

Taking U out, with two nucleases?
Cited by: 5
Author(s): I. Saira Mian, Elizabeth A. Worthey, Reza Salavati
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2105-8-435

Improving model construction of profile HMMs for remote homology detection through structural alignment
Cited by: 22
Author(s): Juliana Silva Bernardes, Alberto M. R. Dávila, Vítor Santos Costa, Gerson Zaverucha
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2105-11-431

Hidden Markov model speed heuristic and iterative HMM search procedure
Cited by: 871
Author(s): L. Steven Johnson, Sean R. Eddy, Elon Portugaly
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-6-187

Rank-invariant resampling based estimation of false discovery rate for analysis of small sample microarray data
Cited by: 15
Author(s): Nitin Jain, HyungJun Cho, Michael J. OʼConnell, Duncan Lee
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-6-S2-S12

Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
Cited by: 179
Author(s): Leming Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Zhong Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-14-S15-S12

Quantitative synteny scoring improves homology inference and partitioning of gene families
Cited by: 9
Author(s): Raja Hashim Ali, Sayyed Auwn Muhammad, Muhammad Alam Zaib Khan, Lars Arvestad
Software Mentions: 1
Published: about 11 years ago

10.1093/gbe/evz069

Mutagenesis Scanning Uncovers Evolutionary Constraints on Tobacco Etch Potyvirus Membrane-Associated 6K2 Protein
Cited by: 8
Author(s): Rubén González, Beilei Wu, Xianghua Li, Fernando Martínez, Santiago F. Elena
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evz219

Mapping of Multiple Complementary Sex Determination Loci in a Parasitoid Wasp
Cited by: 9
Author(s): Cyril Matthey-Doret, Casper J. van der Kooi, Daniel L. Jeffries, Jens Bast, Alice B. Dennis, Christoph Vorburger, Tanja Schwander
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2105-11-162

Knowledge-guided gene ranking by coordinative component analysis
Cited by: 12
Author(s): Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke
Software Mentions: 1
Published: over 14 years ago

10.1186/s12859-017-1766-x

Correcting nucleotide-specific biases in high-throughput sequencing data
Cited by: 19
Author(s): Jeremy Wang, Bryan C. Quach, Terrence S. Furey
Software Mentions: 1
Published: over 7 years ago

10.1186/gm39

A kernel-based integration of genome-wide data for clinical decision support
Cited by: 67
Author(s): Anneleen Daemen, Olivier Gevaert, Fabian Ojeda, Annelies Debucquoy, Johan A. K. Suykens, Christine Sempoux, Jean‐Pascal Machiels, Karin Haustermans, Bart De Moor
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-7-S2-S20

Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats
Cited by: 49
Author(s): Tao Chen, Lei Guo, Lu Zhang, Leming Shi, Hong Fang, Yongming Sun, James C. Fuscoe, Nan Mei
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2105-8-364

A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments
Cited by: 58
Author(s): Hyungwon Choi, Ronglai Shen, Arul M. Chinnaiyan, Debashis Ghosh
Software Mentions: 1
Published: about 17 years ago

10.1186/s12859-017-1515-1

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO
Cited by: 35
Author(s): Yuan Zuo, Yi Cui, Guoqiang Yu, Ruijiang Li, Habtom W. Ressom
Software Mentions: 1
Published: almost 8 years ago

10.1155/2013/854643

Evaluative Conditioning with Facial Stimuli in Dementia Patients
Cited by: 1
Author(s): Andreas Blessing, Jacqueline Zöllig, Roland Weierstall, Gerhard Dammann, Mike Martin
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-7-328

Computational expression deconvolution in a complex mammalian organ
Cited by: 76
Author(s): Min Wang, Stephen R. Master, Lewis A. Chodosh
Software Mentions: 1
Published: over 18 years ago

10.1186/s12859-021-04184-7

SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks
Cited by: 1
Author(s): Shaya Akbarinejad, Mostafa Hadadian Nejad Yousefi, Maziar Goudarzi
Software Mentions: 1
Published: over 3 years ago

10.1186/s13073-014-0100-8

YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens
Cited by: 80
Author(s): Darren Abbey, Jason Funt, Mor N Lurie-Weinberger, Dawn Thompson, Aviv Regev, Chad L. Myers, Judith Berman
Software Mentions: 1
Published: about 10 years ago

10.1186/s13073-014-0112-4

Systematic identification and quantification of phase variation in commensal and pathogenic Escherichia coli
Cited by: 11
Author(s): Amir Goldberg, Ofer Fridman, Irine Ronin, Nathalie Q. Balaban
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-14-6

More powerful significant testing for time course gene expression data using functional principal component analysis approaches
Cited by: 40
Author(s): Shuang Wu, Hulin Wu
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13073-016-0383-z

Alternate-locus aware variant calling in whole genome sequencing
Cited by: 16
Author(s): Marten Jäger, Max Schubach, Tomasz Żemojtel, Knut Reinert, Deanna M. Church, Peter N. Robinson
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13073-018-0597-3

Identification of Jun loss promotes resistance to histone deacetylase inhibitor entinostat through Myc signaling in luminal breast cancer
Cited by: 14
Author(s): Miki Tanioka, Kevin R. Mott, Daniel P. Hollern, Cheng Fan, David B. Darr, Charles M. Perou
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-13-135

β-empirical Bayes inference and model diagnosis of microarray data
Cited by: 7
Author(s): Mohammad Manir Hossain Mollah, Md. Nurul Haque Mollah, Hirohisa Kishino
Software Mentions: 1
Published: over 12 years ago

10.1186/s12984-020-00711-4

Technology for monitoring everyday prosthesis use: a systematic review
Cited by: 46
Author(s): Alix Chadwell, Laura Diment, M. Encarna Micó-Amigo, Dafne Zuleima Morgado Ramírez, Alexander Dickinson, Malcolm Granat, Laurence Kenney, Sisary Kheng, Mohammad Sobuh, Robert T. Ssekitoleko, Peter Worsley
Software Mentions: 1
Published: over 4 years ago

10.1016/j.gpb.2017.08.003

The Ability of Different Imputation Methods to Preserve the Significant Genes and Pathways in Cancer
Cited by: 7
Author(s): Rosa Aghdam, Taban Baghfalaki, Pegah Khosravi, Elnaz Saberi Ansari
Software Mentions: 1
Published: almost 7 years ago

10.1186/1479-5876-10-41

Gene expression profiling of HCV genotype 3a initial liver fibrosis and cirrhosis patients using microarray
Cited by: 12
Author(s): Waqar Ahmad, Bushra Ijaz, Sajida Hassan
Software Mentions: 1
Published: over 12 years ago

10.1029/2019GL082764

Mars Science Laboratory Observations of Chloride Salts in Gale Crater, Mars
Cited by: 48
Author(s): N. Thomas, B. L. Ehlmann, Pierre‐Yves Meslin, W. Rapin, D. E. Anderson, F. Rivera‐Hernández, O. Forni, Susanne Schröder, A. Cousin, N. Mangold, R. Gellert, O. Gasnault, R. C. Wiens
Software Mentions: 1
Published: about 5 years ago

10.1002/2017GL075998

The Signature of Southern Hemisphere Atmospheric Circulation Patterns in Antarctic Precipitation
Cited by: 53
Author(s): Gareth J. Marshall, David W. J. Thompson, M. R. van den Broeke
Software Mentions: 1
Published: about 7 years ago

10.3390/geriatrics4010027

Characterisation of Benzodiazepine Use in an Older Population Registered in Family Health Units in the Region of Minho, Portugal
Cited by: 3
Author(s): Ana Tereza Vilaça, Ana Carolina Reiff e Vieira, André Filipe Borges Fernandes, Daniela Furuzawa Ribeiro, Inês Esteves
Software Mentions: 1
Published: over 5 years ago

10.1186/1742-2094-8-113

Nogo receptor is involved in the adhesion of dendritic cells to myelin
Cited by: 22
Author(s): Claire McDonald, Karin Steinbach, Florian Kern, Rüdiger Schweigreiter, Roland Martin, Christine E. Bandtlow, Markus Reindl
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-12-S13-S15

Finding consistent disease subnetworks across microarray datasets
Cited by: 39
Author(s): Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
Software Mentions: 1
Published: almost 13 years ago

10.1007/s40520-019-01147-0

Effects of positive personal and non-personal autobiographical stimuli on emotional regulation in older adults
Cited by: 8
Author(s): L. M. Carretero, José Miguel Latorre Postigo, Dolores Fernández, Tom J. Barry, Jorge Javier Ricarte
Software Mentions: 1
Published: almost 6 years ago

10.1107/S205252061402126X

Structure, hydrogen bonding and thermal expansion of ammonium carbonate monohydrate
Cited by: 14
Author(s): A. Dominic Fortes, Ian G. Wood, Dario Alfè, Eduardo Hernández, Matthias J. Gutmann, Hazel A. Sparkes
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12967-019-1981-5

Revealing the pathogenic changes of PAH based on multiomics characteristics
Cited by: 8
Author(s): Li Zhang, Shaokun Chen, Xixi Zeng, Da‐Cen Lin, Yumei Li, Long-Xin Gui, Mo‐Jun Lin
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-10-43

An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters
Cited by: 17
Author(s): Qingbo Li, Bryan A. P. Roxas
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-12-305

IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data
Cited by: 27
Author(s): Hyunsoo Kim, Yingtao Bi, Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri
Software Mentions: 1
Published: over 13 years ago

10.1186/s12859-021-04088-6

Fast and SNP-aware short read alignment with SALT
Cited by: 0
Author(s): Wei Quan, Bo Liu, Yadong Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-017-1470-x

BATVI: Fast, sensitive and accurate detection of virus integrations
Cited by: 17
Author(s): Chandana Tennakoon, Wing-Kin Sung
Software Mentions: 1
Published: over 7 years ago

10.1152/jn.00956.2015

Temporal accuracy of human cortico-cortical interactions
Cited by: 11
Author(s): Idan Tal, Moshe Abeles
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-12-90

Using context to improve protein domain identification
Cited by: 32
Author(s): Alejandro Ochoa, Manuel Llinás, Mona Singh
Software Mentions: 1
Published: over 13 years ago

10.9745/GHSP-D-18-00105

Use of Mid-Upper Arm Circumference by Novel Community Platforms to Detect, Diagnose, and Treat Severe Acute Malnutrition in Children: A Systematic Review
Cited by: 35
Author(s): Jessica Bliss, Natasha Lelijveld, André Briend, Marko Kerac, Mark J. Manary, Marie McGrath, Zita Weise Prinzo, Susan Shepherd, Noël Marie Zagré, Sophie Woodhead, Saúl Guerrero, Amy Mayberry
Software Mentions: 1
Published: about 6 years ago

10.9745/GHSP-D-19-00004

Alternative Ready-To-Use Therapeutic Food Yields Less Recovery Than the Standard for Treating Acute Malnutrition in Children From Ghana
Cited by: 18
Author(s): Kristin Kohlmann, Meghan Callaghan-Gillespie, Julia M. Gauglitz, Matilda Steiner-Asiedu, Firibu Kwesi Saalia, Carly Edwards, Mark J. Manary
Software Mentions: 1
Published: over 5 years ago

10.1152/jn.01048.2015

Influence of envelope waveform on ITD sensitivity of neurons in the auditory midbrain
Cited by: 14
Author(s): David Greenberg, Jessica J. M. Monaghan, Mathias Dietz, Torsten Marquardt, David McAlpine
Software Mentions: 1
Published: about 7 years ago

10.1186/s13099-016-0092-6

The isolation and molecular characterization of Mycobacterium avium subsp. paratuberculosis in Shandong province, China
Cited by: 15
Author(s): Ruichao Yue, Chunfa Liu, Paul Barrow, Fei Liu, Yongyong Cui, Lifeng Yang, Deming Zhao, Xiangmei Zhou
Software Mentions: 1
Published: over 8 years ago

10.1186/1746-160X-9-2

The university münster model surgery system for orthognathic surgery. Part II – KD-MMS
Cited by: 5
Author(s): U Ehmer, Ulrich Joos, Thomas Ziebura, S Flieger, Dirk Wiechmann
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13005-021-00278-y

The University Münster model surgery system for orthognathic surgery - The digital update
Cited by: 8
Author(s): Thomas Stamm, Dennis Böttcher, Johannes Kleinheinz
Software Mentions: 1
Published: over 3 years ago

10.1186/1746-160X-8-9

A prospective clinical trial on the influence of a triamcinolone/demeclocycline and a calcium hydroxide based temporary cement on pain perception
Cited by: 6
Author(s): Brita Willershausen, Inés Willershausen, Vicky Ehlers, Adriano Azaripour, B. Briseño
Software Mentions: 1
Published: over 12 years ago

10.1186/s13005-021-00279-x

Predictability of maxillary positioning: a 3D comparison of virtual and conventional orthognathic surgery planning
Cited by: 3
Author(s): Anja Quast, Petra Santander, Timon Kahlmeier, Norman Moser, Henning Schliephake, Philipp Meyer-Marcotty
Software Mentions: 1
Published: over 3 years ago

10.1186/1746-160X-8-14

The University Münster model surgery system for Orthognathic surgery. Part I – The idea behind
Cited by: 9
Author(s): U Ehmer, Ulrich Joos, S Flieger, Dirk Wiechmann
Software Mentions: 1
Published: over 12 years ago

10.3928/24748307-20171227-01

A Linguistic Analysis of Health Literacy Demands of Chronic Kidney Disease Patient Education Materials
Cited by: 1
Author(s): Suzanne Morony, Angela C Webster, Rachelle Buchbinder, Suzanne Kirkendall, Kirsten McCaffery, Rosemary Clerehan
Software Mentions: 1
Published: almost 7 years ago

10.1093/heapol/czz060

The whole is more than the sum of the parts: establishing an enabling health system environment for reducing acute child malnutrition in a rural South African district
Cited by: 16
Author(s): Helen Schneider, Maria van der Merwe, Beauty Marutla, Joseph Cupido, Shuaib Kauchali
Software Mentions: 1
Published: over 5 years ago

10.1186/s12961-017-0255-z

A critical appraisal of guidelines used for management of severe acute malnutrition in South Africa’s referral system
Cited by: 3
Author(s): Faith Nankasa Mambulu-Chikankheni, John Eyles, Ejemai Eboreime, Prudence Ditlopo
Software Mentions: 1
Published: about 7 years ago

10.3390/healthcare9040416

Children’s Attitudes and Behaviors about Oral Health and Dental Practices
Cited by: 4
Author(s): Sara Costa Fernandes, Ana Filipa de Sequeira Louceiro, Luísa Bandeira Lopes, Francisco Esteves, Patrícia Arriaga
Software Mentions: 1
Published: over 3 years ago

10.1155/2011/260214

Hepatic Gene Expression Profiles Are Altered by Dietary Unsalted Korean Fermented Soybean (Chongkukjang) Consumption in Mice with Diet-Induced Obesity
Cited by: 14
Author(s): Ju-Ryoun Soh, Dae Young Kwon, Youn‐Soo Cha
Software Mentions: 1
Published: almost 14 years ago

10.1186/s41065-018-0072-6

Construction of a high-density genetic map: genotyping by sequencing (GBS) to map purple seed coat color (Psc) in hulless barley
Cited by: 25
Author(s): Xiaohua Yao, Kaiyi Wu, Youhua Yao, Yang Bai, Jingxiu Ye, Chi De-zhao
Software Mentions: 1
Published: about 6 years ago

10.1186/s41065-020-00145-x

Identification of MMP1 as a potential gene conferring erlotinib resistance in non-small cell lung cancer based on bioinformatics analyses
Cited by: 6
Author(s): Huyue Zhou, Qiumei Xiang, Changpeng� Hu, Jing Zhang, Qian Zhang, Rong Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s40494-018-0206-1

Comparing the effectiveness of hyperspectral imaging and Raman spectroscopy: a case study on Armenian manuscripts
Cited by: 11
Author(s): Ian J. Maybury, David N. Howell, Melissa Terras, Heather Viles
Software Mentions: 1
Published: over 6 years ago

10.1038/s41438-020-00402-0

The loss of function of HEL, which encodes a cellulose synthase interactive protein, causes helical and vine-like growth of tomato
Cited by: 6
Author(s): Qing Yang, Xiaoshuai Wan, Jiaying Wang, Yuyang Zhang, Junhong Zhang, Taotao Wang, Changxian Yang, Zhibiao Ye
Software Mentions: 1
Published: about 4 years ago

10.1038/s41438-020-00362-5

Rapid dehydration of grape berries dampens the post-ripening transcriptomic program and the metabolite profile evolution
Cited by: 15
Author(s): Sara Zenoni, Alessandra Amato, Erica D’Incà, Flavia Guzzo, Giovanni Battista Tornielli
Software Mentions: 1
Published: about 4 years ago

10.1155/2013/492170

Methylation and Expression of Immune and Inflammatory Genes in the Offspring of Bariatric Bypass Surgery Patients
Cited by: 53
Author(s): Frédéric Guénard, André Tchernof, Yves Deshaies, Katherine Cianflone, John G. Kral, Picard Marceau, Marie‐Claude Vohl
Software Mentions: 1
Published: almost 12 years ago

10.1155/2015/584854

Identification of Iron Homeostasis Genes Dysregulation Potentially Involved in Retinopathy of Prematurity Pathogenicity by Microarray Analysis
Cited by: 3
Author(s): Xiaodong Luo, Chun-yi Zhang, Jiawen Zhang, Jianlin Jiang, Aihua Yin, Li Guo, Chuan Nie, Xuzai Lu, Hua Deng, Liang Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1002/hbm.24445

Characterizing hippocampal dynamics with MEG: A systematic review and evidence‐based guidelines
Cited by: 40
Author(s): Emily Ruzich, Maité Crespo‐García, Sarang S. Dalal, Justin F. Schneiderman
Software Mentions: 1
Published: about 6 years ago

10.1002/hbm.25126

Structural correlates of atypical visual and motor cortical oscillations in pediatric‐onset multiple sclerosis
Cited by: 6
Author(s): Amy Waldman, John Sollee, Ritobrato Datta, Amy M. Lavery, Geraldine Liu, Tomás S. Alemán, Brenda Banwell, William Gaetz
Software Mentions: 1
Published: over 4 years ago

10.1002/hbm.23189

Modulation of post-movement beta rebound by contraction force and rate of force development
Cited by: 54
Author(s): Adam Fry, Karen J. Mullinger, George O’Neill, Eleanor L. Barratt, Peter G. Morris, Markus Bauer, Jonathan P. Folland, Matthew J. Brookes
Software Mentions: 1
Published: over 8 years ago

10.1038/s41439-019-0057-7

Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing
Cited by: 7
Author(s): Masao Nagasaki, Yoshio Kuroki, Tomoko Shibata, Fumiki Katsuoka, Tsuneyo Mimori, Yosuke Kawai, Naoko Minegishi, Atsushi Hozawa, Shinichi Kuriyama, Yôichi Suzuki, Hiroshi Kawame, Fuji Nagami, Takako Toda, Soichi Ogishima, Kazuyuki Kojima, Kazuharu Misawa, Osamu Takahashi, Nobuo Fuse, Hiroshi Tanaka, Nobuo Yaegashi, Kengo Kinoshita, Shiego Kure, Jun Yasuda, Masayuki Yamamoto
Software Mentions: 1
Published: over 5 years ago

10.1038/s41439-019-0045-y

A novel compound heterozygous mutation in TTC8 identified in a Japanese patient
Cited by: 8
Author(s): Shigeru Satō, Takeshi Morimoto, Kikuko Hotta, Takashi Fujikado, Kohji Nishida
Software Mentions: 1
Published: over 5 years ago

10.1186/1742-4933-10-19

Slower immune system aging in women versus men in the Japanese population
Cited by: 142
Author(s): Katsuíku Hirokawa, Masanori Utsuyama, Yoshio Hayashi, Masanobu Kitagawa, Takashi Makinodan, Tamás Fülöp
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-7-414

Semi-supervised discovery of differential genes
Cited by: 2
Author(s): Shigeyuki Oba, Shin lshii
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2105-11-299

poolMC: Smart pooling of mRNA samples in microarray experiments
Cited by: 35
Author(s): Raghunandan M. Kainkaryam, Angela Bruex, Anna C. Gilbert, John Schiefelbein, Peter J. Woolf
Software Mentions: 1
Published: over 14 years ago

10.1186/1750-9378-2-16

Genome wide expression analysis in HPV16 Cervical Cancer: identification of altered metabolic pathways
Cited by: 55
Author(s): Carlos Pérez‐Plasencia, Guelaguetza Vázquez-Ortíz, Ricardo López-Romero, Patricia Piña‐Sánchez, José Moreno, Mauricio Salcedo
Software Mentions: 1
Published: about 17 years ago

10.1186/s13027-017-0157-2

High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer
Cited by: 32
Author(s): Wendy K. Glenn, Christopher C. Ngan, Timothy G. Amos, Richard J. Edwards, Joshua M. Swift, Louise Lutze-Mann, Fei Shang, Noel J. Whitaker, James S. Lawson
Software Mentions: 1
Published: over 7 years ago

10.1186/s13027-019-0228-7

The burden of cancers associated with HIV in the South African public health sector, 2004–2014: a record linkage study
Cited by: 42
Author(s): Tafadzwa Dhokotera, Julia Bohlius, Adrian Spoerri, Matthias Egger, Jabulani Ncayiyana, Victor Olago, Elvira Singh, Mazvita Sengayi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-020-03584-5

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads
Cited by: 8
Author(s): Sina Majidian, Mohammad Hossein Kahaei, Dick de Ridder
Software Mentions: 1
Published: over 4 years ago

10.1155/2014/183924

Inhibition of Return in Fear of Spiders: Discrepant Eye Movement and Reaction Time Data
Cited by: 7
Author(s): Elisa Berdica, Antje B. M. Gerdes, Andre Pittig, Georg W. Alpers
Software Mentions: 1
Published: almost 11 years ago

10.3390/insects11110743

Changes in Honey Bee Head Proteome in Response to Dietary 24-Methylenecholesterol
Cited by: 1
Author(s): Priyadarshini Chakrabarti, Ramesh R. Sagili
Software Mentions: 1
Published: about 4 years ago

10.3390/insects12080666

Stage- and Rearing-Dependent Metabolomics Profiling of Ophiocordyceps sinensis and Its Pipeline Products
Cited by: 2
Author(s): Rui Tang, Xuehong Qiu, Li Cao, Hailin Long, Richou Han
Software Mentions: 1
Published: over 3 years ago

10.1093/inthealth/ihx022

Monitoring and discharging children being treated for severe acute malnutrition using mid-upper arm circumference: secondary data analysis from rural Gambia
Cited by: 14
Author(s): Alice Burrell, Marko Kerac, Helen M Nabwera
Software Mentions: 1
Published: over 7 years ago

10.1155/2014/721453

Differential Network Analyses of Alzheimer’s Disease Identify Early Events in Alzheimer’s Disease Pathology
Cited by: 10
Author(s): Jing Xia, David M. Rocke, George Perry, Monika Ray
Software Mentions: 1
Published: almost 11 years ago

10.1186/1939-8433-6-19

Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data
Cited by: 24
Author(s): Ki Hong Jung, Hyun Jung Gho, Hoi Khoanh Giong, Anil Kumar Nalini Chandran, Quynh N. Nguyen, Hee Bak Choi, Tian Zhang, Wen Wang, Jin Hyun Kim, Hong Kyu Choi, Gynheung An
Software Mentions: 1
Published: over 11 years ago

10.1016/j.isci.2020.100968

The SUMOylated METTL8 Induces R-loop and Tumorigenesis via m3C
Cited by: 31
Author(s): Lihong Zhang, Xueyun Zhang, Tao Hu, Xinyun Chen, Jing-Jia Li, Manfred Raida, Ningning Sun, Yan Luo, Xiang Gao
Software Mentions: 1
Published: over 4 years ago

10.1186/s12284-018-0218-1

Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy
Cited by: 48
Author(s): Jian Sun, Liuqing Yang, Jingguo Wang, Hualong Liu, Hongliang Zheng, Dongwei Xie, Minghui Zhang, Mingfang Feng, Yan Jia, Hongwei Zhao, Detang Zou
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-018-2253-8

HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads
Cited by: 8
Author(s): Stefano Beretta, Murray Patterson, Tobias Marschall, Marcel Martin, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni
Software Mentions: 1
Published: over 6 years ago

10.1186/s12967-019-1923-2

Identification of two microRNA signatures in whole blood as novel biomarkers for diagnosis of nasopharyngeal carcinoma
Cited by: 25
Author(s): Wen Wen, Shi-Juan Mai, Huan‐Xin Lin, Mei‐Yin Zhang, Jialing Huang, Xin Hua, Chao Lin, Zhi‐Qing Long, Zheng Lu, Xiao‐Feng Sun, Sai-Lan Liu, Qi Yang, Qian Zhu, Huiyun Wang, Ling Guo
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-9-114

Effects of dependence in high-dimensional multiple testing problems
Cited by: 197
Author(s): KI Kyung In Kim, Mark A. van de Wiel
Software Mentions: 1
Published: almost 17 years ago

Projects: cran: SAM

Papers Mentioning SAM 4,566