cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1471-2334-10-88

Parvovirus B19 infection and severe anaemia in Kenyan children: a retrospective case control study
Cited by: 25
Author(s): James Wildig, Yvonne E. Cossart, Norbert Peshu, Nimmo Gicheru, James Tuju, Thomas N. Williams, Charles R. Newton
Software Mentions: 1
Published: over 14 years ago

10.1186/s12879-017-2899-2

Examining the online approaches used by hospitals in Sydney, Australia to inform patients about healthcare associated infections and infection prevention strategies
Cited by: 8
Author(s): J. Park, Holly Seale
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12916-016-0671-x

Risk factors for hospital re-presentation among older adults following fragility fractures: a systematic review and meta-analysis
Cited by: 16
Author(s): Saira Mathew, Elise Gane, Kristiann C. Heesch, Steven McPhail
Software Mentions: 1
Published: about 8 years ago

10.1186/1741-7015-8-1

IGF-I induced genes in stromal fibroblasts predict the clinical outcome of breast and lung cancer patients
Cited by: 69
Author(s): Michal Rajski, Rosanna Zanetti-Dällenbach, Brigitte Vogel, Richard Herrmann, Christoph Rochlitz, Martin Buess
Software Mentions: 1
Published: almost 15 years ago

10.1186/1741-7015-9-2

Differential endothelial cell gene expression by African Americans versusCaucasian Americans: a possible contribution to health disparity in vascular disease and cancer
Cited by: 34
Author(s): Peng Wei, Liming Milbauer, Judy Enenstein, Julia Nguyen, Wei Pan, Robert P. Hebbel
Software Mentions: 1
Published: almost 14 years ago

10.1186/1741-7015-7-9

A compact VEGF signature associated with distant metastases and poor outcomes
Cited by: 156
Author(s): Zhiyuan Hu, Cheng Fan, Chad Livasy, Xiaping He, Daniel S. Oh, Matthew G. Ewend, Lisa A. Carey, Subbaya Subramanian, Robert B. West, Francis Ikpatt, Olufunmilayo I. Olopade, Matt van de Rijn, Charles M. Perou
Software Mentions: 1
Published: over 15 years ago

10.1186/s12881-018-0580-2

Case report of familial sudden cardiac death caused by a DSG2 p.F531C mutation as genetic background when carrying with heterozygous KCNE5 p.D92E/E93X mutation
Cited by: 8
Author(s): Yenn‐Jiang Lin, Jiana Huang, Siqi He, Ruiling Feng, Zhian Zhong, Yang Liu, Weitao Ye, Xin Li, Hongtao Liao, Hongwen Fei, Fang Rao, Zhi‐Xin Shan, Chunyu Deng, Xianzhang Zhan, Yumei Xue, Hui Liu, Bin Zhang, Kejian Wang, Qianhuan Zhang, Shulin Wu, Xiufang Lin
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8794-4-78

MicroRNA profiling of diverse endothelial cell types
Cited by: 89
Author(s): Matthew N. McCall, Oliver A. Kent, Jianshi Yu, Karen Fox-Talbot, Ari Zaiman, Marc K. Halushka
Software Mentions: 1
Published: about 13 years ago

10.1186/1755-8794-3-53

Concomitant heterochromatinisation and down-regulation of gene expression unveils epigenetic silencing of RELBin an aggressive subset of chronic lymphocytic leukemia in males
Cited by: 15
Author(s): Jean‐Brice Marteau, O. Rigaud, Thibaut Brugat, Nathalie Gault, Laurent Vallat, Mogens Kruhøffer, Torben F. Ørntoft, Florence Nguyen‐Khac, Sylvie Chevillard, Hélène Merle‐Beral, Jozo Delić
Software Mentions: 1
Published: about 14 years ago

10.1186/1755-8794-3-30

Identification of protein-coding and non-coding RNA expression profiles in CD34+and in stromal cells in refractory anemia with ringed sideroblasts
Cited by: 12
Author(s): Mariana Ozello Baratti, Yuri B Moreira, Fabı́ola Traina, Fernando Ferreira Costa, Sérgio Verjovski-Almeida, Sara T. Olalla-Saad
Software Mentions: 1
Published: over 14 years ago

10.1186/1755-8794-5-15

Fibroblasts from phenotypically normal palmar fascia exhibit molecular profiles highly similar to fibroblasts from active disease in Dupuytren's Contracture
Cited by: 25
Author(s): Latha Satish, William A. LaFramboise, Sharon L. Johnson, Linda Vi, Anna Njarlangattil, Christina Raykha, John M. Krill-Burger, Phillip H. Gallo, David B. O’Gorman, Bing Siang Gan, Mark E. Baratz, Garth D. Ehrlich, Sandeep Kathju
Software Mentions: 1
Published: over 12 years ago

10.1186/1755-8794-6-22

Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways
Cited by: 12
Author(s): Cecilia Mancini, Paola Roncaglia, Alessandro Brussino, Giovanni Stevanin, Nicola Lo Buono, Helena Krmac, Francesca Maltecca, Elena Gazzano, Anna Bartoletti-Stella, Maria Antonietta Calvaruso, Luisa Iommarini, Claudia Cagnoli, Sylvie Forlani, Isabelle Le Ber, Alexandra Dürr, Alexis Brice, Dario Ghigo, Giorgio Casari, Anna Maria Porcelli, Ada Funaro, Giuseppe Gasparre, Stefano Gustincich, Alfredo Brusco
Software Mentions: 1
Published: over 11 years ago

10.1186/1755-8794-1-37

An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma
Cited by: 112
Author(s): Domenica Ronchetti, Marta Lionetti, Laura Mosca, Luca Agnelli, Adrian Andronache, Sonia Fabris, Giorgio Lambertenghi Deliliers, Antonino Neri
Software Mentions: 1
Published: over 16 years ago

10.1186/1755-8794-2-55

Anti-oncogenic and pro-differentiation effects of clorgyline, a monoamine oxidase A inhibitor, on high grade prostate cancer cells
Cited by: 29
Author(s): Hongjuan Zhao, V. Flamand, Donna M. Peehl
Software Mentions: 1
Published: over 15 years ago

10.1186/1755-8794-3-27

Effect of methylene blue on the genomic response to reperfusion injury induced by cardiac arrest and cardiopulmonary resuscitation in porcine brain
Cited by: 24
Author(s): Cécile Martijn, Lars Wiklund
Software Mentions: 1
Published: over 14 years ago

10.1186/1755-8794-4-74

Microarray analysis of peripheral blood lymphocytes from ALS patients and the SAFE detection of the KEGG ALS pathway
Cited by: 32
Author(s): Jean Luc C. Mougeot, Zhen Li, Andrea E. Price, Fred A. Wright, Benjamin Rix Brooks
Software Mentions: 1
Published: about 13 years ago

10.1186/1755-8794-3-24

Examining smoking-induced differential gene expression changes in buccal mucosa
Cited by: 22
Author(s): Doris M. Kupfer, Vicky L. White, Marita C Jenkins, Dennis Burian
Software Mentions: 1
Published: over 14 years ago

10.1186/1755-8794-3-3

Association of adipocyte genes with ASP expression: a microarray analysis of subcutaneous and omental adipose tissue in morbidly obese subjects
Cited by: 55
Author(s): Robin MacLaren, Wei Cui, Huiling Lü, Serge Simard, Katherine Cianflone
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-6-27

Small nucleolar RNAs as new biomarkers in chronic lymphocytic leukemia
Cited by: 70
Author(s): Domenica Ronchetti, Laura Mosca, Giovanna Cutrona, Giacomo Tuana, Massimo Gentile, Sonia Fabris, Luca Agnelli, Gabriella Ciceri, Serena Matis, Carlotta Massucco, Monica Colombo, Daniele Reverberi, Anna Grazia Recchia, Sabrina Bossio, Massimo Negrini, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 1
Published: about 11 years ago

10.1186/1755-8794-2-51

Hepatic inflammation mediated by hepatitis C virus core protein is ameliorated by blocking complement activation
Cited by: 18
Author(s): Mau‐Song Chang, Chau‐Ting Yeh, Deng‐Yn Lin, Yu‐Pin Ho, Cheng–Lung Hsu, D. Montgomery Bissell
Software Mentions: 1
Published: over 15 years ago

10.1186/1755-8794-4-41

Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines
Cited by: 30
Author(s): Siew Hong Lam, Serene G. P. Lee, Chin Yo Lin, Jane S. Thomsen, Pan Fu, K. R. K. Murthy, Haixia Li, Kunde Ramamoorthy Govindarajan, Lin C H Nick, Guillaume Bourque, Zhiyuan Gong, Thomas Lufkin, Edison T. Liu, Sinnakaruppan Mathavan
Software Mentions: 1
Published: over 13 years ago

10.1186/s12920-015-0082-4

Effects of statin on circulating microRNAome and predicted function regulatory network in patients with unstable angina
Cited by: 18
Author(s): Jingjin Li, Hong Chen, Jingyi Ren, Junxian Song, Feng Zhang, Jing Zhang, Chongyou Lee, Sufang Li, Qiang Geng, Yin Cao, Ning Xu
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8794-3-17

Predicting environmental chemical factors associated with disease-related gene expression data
Cited by: 24
Author(s): Chirag Patel, Atul J. Butte
Software Mentions: 1
Published: over 14 years ago

10.1186/1755-8794-3-58

Comparative gene expression profiling analysis of urothelial carcinoma of the renal pelvis and bladder
Cited by: 51
Author(s): Zhongfa Zhang, Kyle A. Furge, Ximing J. Yang, Bin Tean Teh, Donna E. Hansel
Software Mentions: 1
Published: almost 14 years ago

10.1186/1755-8794-6-S2-S4

Curation-free biomodules mechanisms in prostate cancer predict recurrent disease
Cited by: 8
Author(s): James L. Chen, Alexander O. Hsu, Xinan Yang, Jiànróng Lǐ, Younghee Lee, Gurunadh Parinandi, Haiquan Li, Yves A. Lussier
Software Mentions: 1
Published: over 11 years ago

10.1186/1755-8794-3-2

Gene profiling of the erythro- and megakaryoblastic leukaemias induced by the Graffi murine retrovirus
Cited by: 4
Author(s): Véronique Voisin, Philippe Legault, Diana Paulina Salazar Ospina, Yaacov Ben‐David, Éric Rassart
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-6-S1-S11

A novel method for finding non-small cell lung cancer diagnosis biomarkers
Cited by: 15
Author(s): Quôc-Nam Trân
Software Mentions: 1
Published: almost 12 years ago

10.1186/1755-8794-1-54

The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile
Cited by: 35
Author(s): Oi Lian Kon, Tai‐Tung Yip, Meng Fatt Ho, Weng Hoong Chan, Wai Keong Wong, Soo-Yong Tan, Wai Har Ng, Siok Yuen Kam, Alvin Kh Eng, Patrick A. Ho, Rosa Viner, Hock Soo Ong, M. Priyanthi Kumarasinghe
Software Mentions: 1
Published: about 16 years ago

10.1186/1755-8794-1-13

The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis
Cited by: 425
Author(s): Adam I. Riker, Steven A. Enkemann, Øystein Fodstad, Suhu Liu, Shengxiang Ren, Christopher G. Morris, Yaguang Xi, Paul Howell, Brandon J. Metge, Rajeev S. Samant, Lalita A. Shevde, Wenbin Li, Steven Eschrich, Adil Daud, Jingfang Ju, Jaime Matta
Software Mentions: 1
Published: over 16 years ago

10.1186/s12920-016-0195-4

Integrated analysis of omics data using microRNA-target mRNA network and PPI network reveals regulation of Gnai1 function in the spinal cord of Ews/Ewsr1 KO mice
Cited by: 5
Author(s): Chai Jin Lee, Hongryul Ahn, Sean Bong Lee, Jong Yeon Shin, Woong-Yang Park, Jong‐Il Kim, Jung‐Hee Lee, Hoon Ryu, Sun Kim
Software Mentions: 1
Published: over 8 years ago

10.1186/s12920-021-00981-4

The identification of novel gene mutations for degenerative lumbar spinal stenosis using whole-exome sequencing in a Chinese cohort
Cited by: 2
Author(s): Xin Jiang, Chen Dong
Software Mentions: 1
Published: over 3 years ago

10.1186/1755-8794-3-37

The NRF2-mediated oxidative stress response pathway is associated with tumor cell resistance to arsenic trioxide across the NCI-60 panel
Cited by: 42
Author(s): Qian Liu, Hao Zhang, Lisa Smeester, Fei Zou, Matthew J. Kesic, Ilona Jaspers, Jingbo Pi, Rebecca C. Fry
Software Mentions: 1
Published: over 14 years ago

10.1186/s12920-016-0214-5

Reproducible detection of disease-associated markers from gene expression data
Cited by: 2
Author(s): Katsuhiro Omae, Osamu Komori, Shinto Eguchi
Software Mentions: 1
Published: over 8 years ago

10.1186/1755-8794-1-53

A global transcriptional view of apoptosis in human T-cell activation
Cited by: 24
Author(s): Min Wang, Dirk Windgassen, Eleftherios T. Papoutsakis
Software Mentions: 1
Published: about 16 years ago

10.1186/1755-8794-2-36

MLL rearrangements in pediatric acute lymphoblastic and myeloblastic leukemias: MLL specific and lineage specific signatures
Cited by: 40
Author(s): Andrea Zangrando, Marta Campo Dell’Orto, Geertruy te Kronnie, Giuseppe Basso
Software Mentions: 1
Published: over 15 years ago

10.1186/1755-8794-4-77

Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features
Cited by: 38
Author(s): Vilde Drageset Haakensen, Ole Christian Lingjærde, Torben Lüders, Margit Riis, Aleix Prat, Melissa A. Troester, Marit Muri Holmen, Jan Ole Frantzen, Linda Romundstad, Dina Navjord, Ida K. Bukholm, Tom B⊘rge Johannesen, Charles M. Perou, Giske Ursin, Vessela N. Kristensen, Anne‐Lise Børresen‐Dale, Åslaug Helland
Software Mentions: 1
Published: about 13 years ago

10.1186/1755-8794-2-59

Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family
Cited by: 53
Author(s): Sandeep Sanga, Bradley M. Broom, Vittorio Cristini, Mary E. Edgerton
Software Mentions: 1
Published: about 15 years ago

10.1186/1755-8794-4-22

Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health
Cited by: 247
Author(s): Wim Crielaard, Egija Zaura, Annemarie Schuller, Susan M. Huse, R.C. Montijn, Bart J. F. Keijser
Software Mentions: 1
Published: over 13 years ago

10.1186/s12911-019-0912-y

The "Begin Exploring Fertility Options, Risks and Expectations" (BEFORE) decision aid: development and alpha testing of a fertility tool for premenopausal breast cancer patients
Cited by: 18
Author(s): Brittany Speller, Kelly Metcalfe, Erin Kennedy, Marcia Facey, Ellen Greenblatt, Adena Scheer, Ellen Warner, Anil A. Joy, Frances C. Wright, Nancy N. Baxter
Software Mentions: 1
Published: about 5 years ago

10.1186/s12911-017-0416-6

The effect of a test ordering software intervention on the prescription of unnecessary laboratory tests - a randomized controlled trial
Cited by: 19
Author(s): Carlos Martins, Andréia Teixeira, Luís Filipe Azevedo, Luísa Maria Barbosa Sá, Paulo Alexandre Azevedo Pereira Santos, Nazaré Couto, Altamiro Costa‐Pereira, Alberto Augusto Oliveira Pinto Hespanhol, Cristina Santos
Software Mentions: 1
Published: almost 8 years ago

10.1186/1472-6947-12-136

A multiscale and multiparametric approach for modeling the progression of oral cancer
Cited by: 32
Author(s): Konstantinos Exarchos, Yorgos Goletsis, Dimitrios I. Fotiadis
Software Mentions: 1
Published: about 12 years ago

10.1186/s12911-018-0685-8

A longitudinal feature selection method identifies relevant genes to distinguish complicated injury and uncomplicated injury over time
Cited by: 5
Author(s): Suyan Tian, Chi Wang, Howard H. Chang
Software Mentions: 1
Published: almost 6 years ago

10.1186/1472-6947-10-34

Electronic patient self-assessment and management (SAM): a novel framework for cancer survivorship
Cited by: 32
Author(s): Andrew J. Vickers, Talya Salz, Ethan Basch, Matthew R. Cooperberg, Peter R. Carroll, Foss Tighe, James A. Eastham, Raymond C. Rosen
Software Mentions: 1
Published: over 14 years ago

10.1186/s12874-017-0357-x

Changes in affect after completing a mailed survey about trauma: two pre- and post-test studies in former disability applicants for posttraumatic stress disorder
Cited by: 3
Author(s): Maureen Murdoch, Shannon M. Kehle‐Forbes, Melissa R. Partin
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2180-10-100

Virulence-related Mycobacterium avium subsp hominissuis MAV_2928 gene is associated with vacuole remodeling in macrophages
Cited by: 30
Author(s): Samradhni S Jha, Lia Danelishvili, Dirk Wagner, J. Mäser, Yongjun Li, Ivana Morić, Stefan Vogt, Yoshitaka Yamazaki, Barry Lai, Luiz E. Bermudez
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2180-9-81

Brucella melitensis global gene expression study provides novel information on growth phase-specific gene regulation with potential insights for understanding Brucella:host initial interactions
Cited by: 36
Author(s): C Rossetti, Cristi L. Galindo, Sara D. Lawhon, Harold R. Garner, L. Garry Adams
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2180-6-23

Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
Cited by: 953
Author(s): Karine Brudey, Jeffrey Driscoll, Leen Rigouts, Wolfgang M. Prodinger, Andrea Gori, Sahal Al‐Hajoj, Caroline Allix, Liselotte Aristimuño, Jyoti Arora, Viesturs Baumanis, Lothar Binder, Patrícia Izquierdo Cafrune, Angel Cataldi, Soonfatt Cheong, Roland Diel, C Ellermeier, Jonathan D. Evans, Maryse Fauville-Dufaux, Séverine Ferdinand, Darı́o Garcı́a de Viedma, Carlo Garzelli, Lidia Gazzola, Harrison Magdinier Gomes, M Cristina Guttierez, Peter M. Hawkey, Paul D. van Helden, Gurujaj V Kadival, Barry N. Kreiswirth, Kristin Kremer, M Kubín, Supriya Kulkarni, Benjamin Liens, Troels Lillebæk, Ho Minh Ly, Carlos Martı́n, Christian Martin, Igor Mokrousov, О. В. Нарвская, Yun Fong Ngeow, Ludmila Naumann, Stefan Niemann, Ida Parwati, Zeaur Rahim, Voahangy Rasolofo-Razanamparany, T Rasolonavalona, Maria Lúcia Rosa Rossetti, Sabine Rüsch-Gerdes, Anna Sajduda, Sofía Samper, I. G. Shemyakin, Urvashi Singh, Ákos Somoskövi, Robin Skuce, Dick van Soolingen, Elizabeth M. Streicher, Philip Noël Suffys, Enrico Tortoli, Tatjana Tračevska, Véronique Vincent, Tommie C. Victor, Robin M. Warren, Sook Fan Yap, K. Zaman, Françoise Portaels, Nalin Rastogi, Christophe Sola
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2180-10-224

Class IIa bacteriocin resistance in Enterococcus faecalis V583: The mannose PTS operon mediates global transcriptional responses
Cited by: 59
Author(s): Mona Opsata, Ingolf F. Nes, Helge Holo
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2180-8-60

Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio
Cited by: 36
Author(s): Robert E. Lintner, Pankaj Kumar Mishra, Poonam Srivastava, Betsy M. Martinez-Vaz, Arkady B. Khodursky, Robert Blumenthal
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2180-13-65

Production of capsular polysaccharide does not influence Staphylococcus aureusvancomycin susceptibility
Cited by: 19
Author(s): Andrea Jansen, Christiane Szekat, Wiebke Schröder, Christiane Wolz, Christiane Goerke, Jean C. Lee, Michael Türck, Gabriele Bierbaum
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2180-12-47

Effects of probiotics and antibiotics on the intestinal homeostasis in a computer controlled model of the large intestine
Cited by: 58
Author(s): Ateequr Rehman, Femke-Anouska Heinsen, M. Koenen, Koen Venema, Henrik Knecht, Stephan Hellmig, Stefan Schreiber, Stephan Ott
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2180-9-195

malT knockout mutation invokes a stringent type gene-expression profile in Actinobacillus pleuropneumoniae in bronchoalveolar fluid
Cited by: 14
Author(s): Abdul G. Lone, Vincent Deslandes, John H. E. Nash, Mario Jacques, Janet I. MacInnes
Software Mentions: 1
Published: about 15 years ago

10.1186/s12866-015-0438-0

Gene expression changes in Porphyromonas gingivalis W83 after inoculation in rat oral cavity
Cited by: 3
Author(s): Jian Zhao, Qian Li, Chunyu Pan, Junchao Liu, Hongyan Wang, Lisi Tan, Yaping Pan
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2180-8-186

The lantibiotic mersacidin is a strong inducer of the cell wall stress response of Staphylococcus aureus
Cited by: 58
Author(s): Peter Saß, Andrea Jansen, Christiane Szekat, V. P. Sass, Hans‐Georg Sahl, Gabriele Bierbaum
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2180-8-61

Genome-wide screen for temperature-regulated genes of the obligate intracellular bacterium, Rickettsia typhi
Cited by: 21
Author(s): Sheila M. Dreher-Lesnick, Shane M. Ceraul, M. Sayeedur Rahman, Abdu F. Azad
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2180-11-147

In vivo versus in vitro protein abundance analysis of Shigella dysenteriaetype 1 reveals changes in the expression of proteins involved in virulence, stress and energy metabolism
Cited by: 40
Author(s): Srilatha Kuntumalla, Quanshun Zhang, John C. Braisted, Robert Fleischmann, Scott N. Peterson, Arthur Donohue‐Rolfe, Saul Tzipori, Rembert Pieper
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2180-8-102

Genomic and proteomic analysis of the Alkali-Tolerance Response (AlTR) in Listeria monocytogenes 10403S
Cited by: 54
Author(s): Efstathios S. Giotis, Arunachalam Muthaiyan, I.S. Blair, Brian J. Wilkinson, D.A. McDowell
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2180-10-170

In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1
Cited by: 27
Author(s): Mauricio Soto‐Suárez, Diana M. Bernal, Carolina González, Boris Szurek, Romain Guyot, Joe Tohmé, Valérie Verdier
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2199-14-25

Gene expression studies for the analysis of domoic acid production in the marine diatom Pseudo-nitzschia multiseries
Cited by: 18
Author(s): Katie Rose Boissonneault, Brooks M. Henningsen, Stephen S. Bates, Deborah L. Robertson, Sean Milton, Jerry Pelletier, Deborah A. Hogan, David E. Housman
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2199-10-82

Functional mapping of the fission yeast DNA polymerase δ B-subunit Cdc1 by site-directed and random pentapeptide insertion mutagenesis
Cited by: 11
Author(s): Javiér Sánchez García, Andrey G. Baranovskiy, Elena V. Knatko, Fiona C. Gray, T.H. Tahirov, Stuart A. MacNeill
Software Mentions: 1
Published: over 15 years ago

10.1186/s12891-018-2133-4

A prospective randomized comparison of the minimally invasive direct anterior and the transgluteal approach for primary total hip arthroplasty
Cited by: 37
Author(s): Johannes C. Reichert, Eberhard von Rottkay, Franz Roth, Tim Renz, Johannes Hausmann, Julius Kranz, Lars Rackwitz, Ulrich Nöth, Maximilian Rudert
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2369-14-231

Meta-analysis of molecular response of kidney to ischemia reperfusion injury for the identification of new candidate genes
Cited by: 23
Author(s): Dmitry N. Grigoryev, Dilyara Cheranova, Daniel P. Heruth, Peixin Huang, Li Q. Zhang, Hamid Rabb, Shui Q. Ye
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2377-11-34

Cortical swallowing processing in early subacute stroke
Cited by: 65
Author(s): Inga Teismann, Sonja Suntrup, Tobias Warnecke, Olaf Steinsträter, Matthias Fischer, Agnes Flöel, E.B. Ringelstein, Christo Pantev, Rainer Dziewas
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2377-8-13

Cortical recovery of swallowing function in wound botulism
Cited by: 13
Author(s): Inga Teismann, Olaf Steinstraeter, Tobias Warnecke, Julian Zimmermann, E. B. Ringelstein, Christo Pantev, Rainer Dziewas
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2202-12-15

Gene expression in the rat brain: High similarity but unique differences between frontomedial-, temporal- and occipital cortex
Cited by: 16
Author(s): Carl Trygve Stansberg, Kari Merete Ersland, Paul van der Valk, Vidar M. Steen
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2202-12-51

Mutation of a nicotinic acetylcholine receptor β subunit is associated with resistance to neonicotinoid insecticides in the aphid Myzus persicae
Cited by: 261
Author(s): Chris Bass, Alin M. Puinean, Melanie Andrews, Penny Cutler, Miriam Daniels, Jan Eliáš, Verity Laura Paul, Andrew J. Crossthwaite, I. Denholm, L. M. Field, S. P. Foster, Rob Lind, Martin S. Williamson, Russell Slater
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2202-14-151

Plasticity in neuromagnetic cortical responses suggests enhanced auditory object representation
Cited by: 42
Author(s): Bernhard Roß, Shahab Jamali, Kelly L. Tremblay
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2202-15-37

Gene expression patterns in the hippocampus during the development and aging of Glud1(Glutamate Dehydrogenase 1) transgenic and wild type mice
Cited by: 13
Author(s): Xinkun Wang, Nilam D. Patel, Dongwei Hui, Ranu Pal, Mohamed M. Hafez, Mohamed M. Sayed‐Ahmed, Abdulaziz A. Al-Yahya, Elias K. Michaelis
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2202-10-71

Tactile thermal oral stimulation increases the cortical representation of swallowing
Cited by: 75
Author(s): Inga Teismann, Olaf Steinsträter, Tobias Warnecke, Sonja Suntrup, E. B. Ringelstein, Christo Pantev, Rainer Dziewas
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2202-10-76

Measurement of pharyngeal sensory cortical processing: technique and physiologic implications
Cited by: 13
Author(s): Inga Teismann, Olaf Steinstraeter, Tobias Warnecke, E.B. Ringelstein, Christo Pantev, Rainer Dziewas
Software Mentions: 1
Published: over 15 years ago

10.1136/bmjopen-2018-027548

TAME trial: a multi-arm phase II randomised trial of four novel interventions for malnutrition enteropathy in Zambia and Zimbabwe - a study protocol
Cited by: 5
Author(s): Paul Kelly, Lauren N. Bell, Beatrice Amadi, Mutsa Bwakura‐Dangarembizi, Kelley VanBuskirk, Kanta Chandwe, Miyoba Chipunza, Deophine Ngosa, Nivea Chulu, Susan Hill, Simon Murch, Raymond J. Playford, Andrew J. Prendergast
Software Mentions: 1
Published: about 5 years ago

10.29252/NIRP.BCN.9.2.107

Stress and Perception of Emotional Stimuli: Long-term Stress Rewiring the Brain
Cited by: 14
Author(s): Reza Khosrowabadi
Software Mentions: 1
Published: over 6 years ago

10.1186/1744-9081-4-8

MEG event-related desynchronization and synchronization deficits during basic somatosensory processing in individuals with ADHD
Cited by: 55
Author(s): Colleen Dockstader, William Gaetz, Douglas Cheyne, Frank Wang, F. Xavier Castellanos, Rosemary Tannock
Software Mentions: 1
Published: almost 17 years ago

10.1186/1744-9081-10-32

Multilevel analysis of facial expressions of emotion and script: self-report (arousal and valence) and psychophysiological correlates
Cited by: 17
Author(s): Michela Balconi, Maria Elide Vanutelli, Roberta Finocchiaro
Software Mentions: 1
Published: almost 11 years ago

10.3758/s13428-014-0509-4

Affective norms for 1,586 polish words (ANPW): Duality-of-mind approach
Cited by: 73
Author(s): Kamil K. Imbir
Software Mentions: 1
Published: about 10 years ago

10.3390/bs10050092

Eye Movements in Response to Pain-Related Feelings in the Presence of Low and High Cognitive Loads
Cited by: 1
Author(s): Ramtin Zargari Marandi, Camilla Ann Fjelsted, Iris Hrustanovic, Rikke Olesen, Parisa Gazerani
Software Mentions: 1
Published: over 4 years ago

10.1186/1756-0381-5-4

Weighted multiple testing procedures for genomic studies
Cited by: 13
Author(s): Jiang Gui, Tor D. Tosteson, Mark E. Borsuk
Software Mentions: 1
Published: over 12 years ago

10.1093/bioinformatics/btt113

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
Cited by: 208
Author(s): Jon C. Ison, Matúš Kalaš, Inge Jonassen, Dan Bolser, Mahmut Uludağ, Hamish McWilliam, James Malone, Rodrigo López, Steve Pettifer, Peter Rice
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/bty483

TranscriptClean: variant-aware correction of indels, mismatches and splice junctions in long-read transcripts
Cited by: 44
Author(s): Dana Wyman, A Mortazavi
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btt403

nhmmer: DNA homology search with profile HMMs
Cited by: 604
Author(s): Travis J. Wheeler, Sean R. Eddy
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/btu314

<i>SAMBLASTER</i>: fast duplicate marking and structural variant read extraction
Cited by: 619
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btv098

Sambamba: fast processing of NGS alignment formats
Cited by: 1,278
Author(s): А. В. Тарасов, Albert J. Vilella, Edwin Cuppen, Isaäc J. Nijman, Pjotr Prins
Software Mentions: 1
Published: almost 10 years ago

10.1093/bioinformatics/bty408

PANDA-view: an easy-to-use tool for statistical analysis and visualization of quantitative proteomics data
Cited by: 25
Author(s): Cheng Chang, Kaikun Xu, Chaoping Guo, Wang Jin-xia, Qi Yan, Jian Zhang, Fuchu He, Yunping Zhu
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btu390

The Scramble conversion tool
Cited by: 39
Author(s): James K. Bonfield
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btt601

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop
Cited by: 82
Author(s): André Schumacher, Luca Pireddu, Matti Niemenmaa, Aleksi Kallio, Eija Korpelainen, Gianluigi Zanetti, Keijo Heljanko
Software Mentions: 1
Published: about 11 years ago

10.1093/bioinformatics/bts456

YAHA: fast and flexible long-read alignment with optimal breakpoint detection
Cited by: 63
Author(s): Gregory G. Faust, Ira M. Hall
Software Mentions: 1
Published: over 12 years ago

10.1007/s00422-013-0574-2

Revealing instances of coordination among multiple cortical areas
Cited by: 10
Author(s): Moshe Abeles
Software Mentions: 1
Published: about 11 years ago

10.1186/1745-6150-6-50

Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome
Cited by: 46
Author(s): Manfredo J. Seufferheld, Kyung Mo Kim, James B. Whitfield, Alejandro A. Valerio, Gustavo Caetano‐Anollés
Software Mentions: 1
Published: almost 14 years ago

10.1186/s40659-019-0216-9

Intestinal transcriptional profiling reveals fava bean-induced immune response in DBA/1 mice
Cited by: 1
Author(s): Guankui Du, Mochao Xiao, Quangang Zhu, Chen Zhou, Ao Wang, Wei Cai
Software Mentions: 1
Published: over 5 years ago

10.3390/biology1010005

Biomarker Gene Signature Discovery Integrating Network Knowledge
Cited by: 27
Author(s): Yupeng Cun, Holger Fröhlich
Software Mentions: 1
Published: almost 13 years ago

10.3390/biology10070578

Influence of Varying Dietary ω6 to ω3 Fatty Acid Ratios on the Hepatic Transcriptome, and Association with Phenotypic Traits (Growth, Somatic Indices, and Tissue Lipid Composition), in Atlantic Salmon (Salmo salar)
Cited by: 2
Author(s): Tomer Katan, Xi Xue, Albert Caballero‐Solares, Richard G. Taylor, Christopher C. Parrish, Matthew L. Rise
Software Mentions: 1
Published: over 3 years ago

10.3390/biology6010014

MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data
Cited by: 2
Author(s): Christopher Noune, Caroline Hauxwell
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40364-021-00303-x

LncRNAs serve as novel biomarkers for diagnosis and prognosis of childhood ALL
Cited by: 9
Author(s): Xuanmei Huang, Libin Huang, Qing Xie, Ling Zhang, Shaohui Huang, Mingye Hong, Jiangbin Li, Zunnan Huang, Hua Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12938-021-00930-3

Extended classifier system with continuous real-coded variables for feature extraction of instantaneous pulse-rate variability and respiration of individuals with gaming disorder
Cited by: 1
Author(s): Hung Ming, Tzu Chien Hsiao
Software Mentions: 1
Published: about 3 years ago

10.1186/s12938-021-00882-8

Event-related EEG oscillatory responses elicited by dynamic facial expression
Cited by: 1
Author(s): Tuba Aktürk, Tom A. de Graaf, Yasemin Abra, Sevilay Şahoğlu-Göktaş, Dilek Özkan, Aysun Kula, Bahar Güntekin
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-925X-13-81

The influence of emotion on keyboard typing: an experimental study using visual stimuli
Cited by: 12
Author(s): Po-Ming Lee, Wei-Hsuan Tsui, Tzu‐Chien Hsiao
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-925X-3-34

Review and standardization of cell phone exposure calculations using the SAM phantom and anatomically correct head models
Cited by: 24
Author(s): Brian B. Beard, Wolfgang Kainz
Software Mentions: 1
Published: about 20 years ago

10.1186/s12938-021-00848-w

Attention-based multi-scale features fusion for unobtrusive atrial fibrillation detection using ballistocardiogram signal
Cited by: 7
Author(s): Fangfang Jiang, Chuhang Hong, Tianqing Cheng, Haoqian Wang, Bowen Xu, Biyong Zhang
Software Mentions: 1
Published: almost 4 years ago

10.2349/biij.3.1.e25

Using magnetoencephalography to investigate brain activity during high frequency deep brain stimulation in a cluster headache patient
Cited by: 18
Author(s): NJ Ray, Morten L. Kringelbach, Ned Jenkinson, Owen Slf., Paul Davies, S Wang, Nick de Pennington, PC Hansen, John Stein, TZ Aziz
Software Mentions: 1
Published: almost 18 years ago

10.1155/2015/492395

Transcriptomic Analysis of mRNAs in Human Monocytic Cells Expressing the HIV-1 Nef Protein and Their Exosomes
Cited by: 31
Author(s): Madeeha Aqil, Saurav Mallik, Sanghamitra Bandyopadhyay, Ujjwal Maulik, Shahid Jameel
Software Mentions: 1
Published: almost 10 years ago

Projects: cran: SAM

Papers Mentioning SAM 4,566