cran: SAM | Projects | Ecosyste.ms: Papers

10.1186/1750-9378-2-16

Genome wide expression analysis in HPV16 Cervical Cancer: identification of altered metabolic pathways
Cited by: 55
Author(s): Carlos Pérez‐Plasencia, Guelaguetza Vázquez-Ortíz, Ricardo López-Romero, Patricia Piña‐Sánchez, José Moreno, Mauricio Salcedo
Software Mentions: 1
Published: almost 19 years ago

10.1186/s13027-017-0157-2

High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer
Cited by: 32
Author(s): Wendy K. Glenn, Christopher C. Ngan, Timothy G. Amos, Richard J. Edwards, Joshua M. Swift, Louise Lutze-Mann, Fei Shang, Noel J. Whitaker, James S. Lawson
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13027-019-0228-7

The burden of cancers associated with HIV in the South African public health sector, 2004–2014: a record linkage study
Cited by: 42
Author(s): Tafadzwa Dhokotera, Julia Bohlius, Adrian Spoerri, Matthias Egger, Jabulani Ncayiyana, Victor Olago, Elvira Singh, Mazvita Sengayi
Software Mentions: 1
Published: about 7 years ago

10.3390/insects11110743

Changes in Honey Bee Head Proteome in Response to Dietary 24-Methylenecholesterol
Cited by: 1
Author(s): Priyadarshini Chakrabarti, Ramesh R. Sagili
Software Mentions: 1
Published: almost 6 years ago

10.3390/insects12080666

Stage- and Rearing-Dependent Metabolomics Profiling of Ophiocordyceps sinensis and Its Pipeline Products
Cited by: 2
Author(s): Rui Tang, Xuehong Qiu, Li Cao, Hailin Long, Richou Han
Software Mentions: 1
Published: about 5 years ago

10.1093/inthealth/ihx022

Monitoring and discharging children being treated for severe acute malnutrition using mid-upper arm circumference: secondary data analysis from rural Gambia
Cited by: 14
Author(s): Alice Burrell, Marko Kerac, Helen M Nabwera
Software Mentions: 1
Published: about 9 years ago

10.1155/2014/721453

Differential Network Analyses of Alzheimer’s Disease Identify Early Events in Alzheimer’s Disease Pathology
Cited by: 10
Author(s): Jing Xia, David M. Rocke, George Perry, Monika Ray
Software Mentions: 1
Published: over 12 years ago

10.2196/ijmr.4323

Infant Feeding Websites and Apps: A Systematic Assessment of Quality and Content
Cited by: 69
Author(s): Sarah Taki, Karen Campbell, Catherine Georgina Russell, Rosalind Elliott, Rachel Laws, Elizabeth Denney‐Wilson
Software Mentions: 1
Published: almost 11 years ago

10.2196/ijmr.6440

Online Health Information Regarding Male Infertility: An Evaluation of Readability, Suitability, and Quality
Cited by: 47
Author(s): Stéphanie Robins, Helena J. Barr, Rachel Idelson, Sylvie Lambert, Phyllis Zelkowitz
Software Mentions: 1
Published: almost 10 years ago

10.2196/10440

Trustworthiness, Readability, and Suitability of Web-Based Information for Stroke Prevention and Self-Management for Korean Americans: Critical Evaluation
Cited by: 7
Author(s): Mikyoung A. Lee, Cha-Nam Shin, Kyungeh An
Software Mentions: 1
Published: about 8 years ago

10.1093/jamiaopen/ooab050

Smart About Meds (SAM): a pilot randomized controlled trial of a mobile application to improve medication adherence following hospital discharge
Cited by: 2
Author(s): Bettina Habib, David L. Buckeridge, Melissa Bustillo, Santiago Nicolas Marquez, Manish Thakur, Thai Hoa Tran, Daniala L. Weir, Robyn Tamblyn
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jaci.2019.04.003

Induction of innate cytokine responses by respiratory mucosal challenge with R848 in zebrafish, mice, and humans
Cited by: 8
Author(s): Fränze Progatzky, Akhilesh Jha, Madina Wane, Ryan S. Thwaites, Spyridon Makris, Robin J. Shattock, Cecilia Johansson, Peter Openshaw, Laurence Bugeon, Trevor T. Hansel, Margaret J. Dallman
Software Mentions: 1
Published: about 7 years ago

10.5435/JAAOSGlobal-D-20-00074

Development of Patient Education Materials for Total Joint Replacement During an International Surgical Brigade
Cited by: 1
Author(s): Derek S Stenquist, Lauren V. Ready, Roya Ghazinouri, Carolyn Beagan, Aliesha Wisdom, Jeffrey N. Katz
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10803-017-3120-6

Using Time Perception to Explore Implicit Sensitivity to Emotional Stimuli in Autism Spectrum Disorder
Cited by: 14
Author(s): Catherine R. G. Jones, Anna Lambrechts, Sebastian Gaigg
Software Mentions: 1
Published: over 9 years ago

10.1186/s40537-014-0009-5

DCMS: A data analytics and management system for molecular simulation
Cited by: 12
Author(s): Anand Kumar, Vladimir Grupcev, Meryem Berrada, Joseph Fogarty, Yi-Cheng Tu, Xingquan Zhu, Sagar A. Pandit, Yuni Xia
Software Mentions: 1
Published: over 11 years ago

10.1016/j.jbc.2021.100614

Dynamic association of the H3K64 trimethylation mark with genes encoding exported proteins in Plasmodium falciparum
Cited by: 2
Author(s): C. A. Jabeena, Gayathri Govindaraju, Mukul Rawat, Soundhararajan Gopi, Devadathan Valiyamangalath Sethumadhavan, Abdul Jaleel, Dhakshmi Sasankan, Krishanpal Karmodiya, Arumugam Rajavelu
Software Mentions: 1
Published: over 5 years ago

10.1117/1.JBO.20.10.106001

Multispectral tissue characterization for intestinal anastomosis optimization
Cited by: 15
Author(s): Jaepyeong Cha, Azad Shademan, Hanh N. D. Le, Ryan Decker, Peter C.W. Kim, Jin U. Kang, Axel Krieger
Software Mentions: 1
Published: almost 11 years ago

10.1016/S1674-8301(11)60035-3

Localization of epileptic foci in Children with childhood absence epilepsy by magnetoencephalography combined with synthetic aperture magnetometry
Cited by: 1
Author(s): Xiuxiu Hu, Jun Dong, Xiaoshan Wang, Ting Wu, Lu Yang, Xiaopeng Lu
Software Mentions: 1
Published: about 15 years ago

10.1186/s12929-016-0265-0

Integrated miRNA and mRNA expression profiling in fetal hippocampus with Down syndrome
Cited by: 18
Author(s): Weili Shi, Zhong-Zhen Liu, Hongdan Wang, Dong Wu, Hui Zhang, Hai Xiao, Chaowu Yan, Qiaofang Hou, Shixiu Liao
Software Mentions: 1
Published: about 10 years ago

10.7150/jca.51179

Prognostic significance of KRT19 in Lung Squamous Cancer
Cited by: 10
Author(s): Xun Yuan, Ming Yi, Bing Dong, Qian Chu, Kongming Wu
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.12122

Therapy targets in glioblastoma and cancer stem cells: lessons from haematopoietic neoplasms
Cited by: 42
Author(s): Maria Linda Cruceru, Monica Neagu, Jean‐Baptiste Demoulin, Stefan N. Constantinescu
Software Mentions: 1
Published: almost 13 years ago

10.1111/jcmm.13739

Integrative analysis of competing endogenous <scp>RNA</scp> networks reveals the functional lnc <scp>RNA</scp> s in heart failure
Cited by: 24
Author(s): Zhimin Fan, Shanshan Gao, Yequn Chen, Bo Xu, Chenguang Yu, Minghui Yue, Xuerui Tan
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.13808

Exosomal miR‐95‐5p regulates chondrogenesis and cartilage degradation via histone deacetylase 2/8
Cited by: 72
Author(s): Guping Mao, Shu Hu, Ziji Zhang, Peihui Wu, Xiaoyi Zhao, Ru Lin, Weiming Liao, Yan Kang
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.14647

Prognostic power of a lipid metabolism gene panel for diffuse gliomas
Cited by: 55
Author(s): Fan Wu, Zheng Zhao, Rui‐Chao Chai, Yuqing Liu, Guanzhang Li, Haiyan Jiang, Tao Jiang
Software Mentions: 1
Published: almost 7 years ago

10.1111/jcmm.15924

Characterization and prognostic significance of alternative splicing events in lower‐grade diffuse gliomas
Cited by: 3
Author(s): Zheng Zhao, Guanzhang Li, Yuqing Liu, Ruoyu Huang, Kuanyu Wang, Haiyan Jiang, Renpeng Li, Rui‐Chao Chai, Chuanbao Zhang, Fan Wu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1758-2946-6-1

Prediction of novel drug indications using network driven biological data prioritization and integration
Cited by: 35
Author(s): Ala Qabaja, Mohammed Alshalalfa, Eisa Alanazi, Reda Alhajj
Software Mentions: 1
Published: over 12 years ago

10.1186/2043-9113-1-12

Peripheral blood gene expression profiles in COPD subjects
Cited by: 30
Author(s): Soumyaroop Bhattacharya, Shivraj Tyagi, Sorachai Srisuma, Dawn L. DeMeo, Steven D. Shapiro, Raphael Bueno, Edwin K. Silverman, John J. Reilly, Thomas J. Mariani
Software Mentions: 1
Published: over 15 years ago

10.3390/jcm7120486

The Experimental Effects of Acute Exercise on Long-Term Emotional Memory
Cited by: 16
Author(s): Breanna Wade, Paul D. Loprinzi
Software Mentions: 1
Published: over 7 years ago

10.3390/jcm9061662

Non-Invasive Skin Cancer Diagnosis Using Hyperspectral Imaging for In-Situ Clinical Support
Cited by: 41
Author(s): Raquel Leon, Beatriz Martinez-Vega, Himar Fabelo, Samuel Ortega, V.M. Melian, Irene Mencía Castaño, G. Carretero, Pablo Almeida, Aday García, Eduardo Quevedo, J Hernández, Bernardino Clavo
Software Mentions: 1
Published: about 6 years ago

10.3390/jcm10184261

Epidermal-Derived Hedgehog Signaling Drives Mesenchymal Proliferation during Digit Tip Regeneration
Cited by: 1
Author(s): Zeshaan N. Maan, Yuval Rinkevich, Janos A. Barrera, Kellen Chen, Dominic Henn, Deshka S. Foster, Clark A. Bonham, Jagannath Padmanabhan, Dharshan Sivaraj, Dominik Duscher, Michael S. Hu, Kelley S. Yan, Michael Januszyk, Michael T. Longaker, Irving L. Weissman, Geoffrey C. Gurtner
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm10194348

Epidemiologic, Postmortem Computed Tomography-Morphologic and Biomechanical Analysis of the Effects of Non-Invasive External Pelvic Stabilizers in Genuine Unstable Pelvic Injuries
Cited by: 1
Author(s): Christian Kleber, Mirja Haussmann, Michael Hetz, Michael Tsokos, C. Buschmann
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm10194431

Using Deep Neural Networks for Predicting Age and Sex in Healthy Adult Chest Radiographs
Cited by: 13
Author(s): Chung‐Yi Yang, Yi Pan, Yen Chou, Chia-Jung Yang, Ching-Chung Kao, Kuan-Chieh Huang, Jing-Shan Chang, Hung-Chieh Chen, Kuei-Hong Kuo
Software Mentions: 1
Published: almost 5 years ago

10.1017/cts.2018.190

2157 The socially animated machine (SAM) robot: A social skills intervention for children with autism spectrum disorder
Cited by: 2
Author(s): Jenna B. Lebersfeld, Caleb J. Brasher, Christian D. Clesi, Carl E. Stevens, Fred J. Biasini, Maria Hopkins
Software Mentions: 1
Published: about 8 years ago

10.1186/2251-6581-11-7

RETRACTED ARTICLE: Mobile phone text messaging and Telephone follow-up in type 2 diabetic patients for 3 months: a comparative study
Cited by: 35
Author(s): Mitra Zolfaghari, Seyedeh A Mousavifar, Hamid Haghani
Software Mentions: 1
Published: almost 14 years ago

10.1155/2016/2327341

Expression of the Receptor for Advanced Glycation End Products in Epicardial Fat: Link with Tissue Thickness and Local Insulin Resistance in Coronary Artery Disease
Cited by: 23
Author(s): Elena Dozio, Elena Vianello, Silvia Briganti, John Lamont, Lorenza Tacchini, Gerd Schmitz
Software Mentions: 1
Published: over 10 years ago

10.1186/s40337-021-00475-9

Emotional reactivity to binge food and erotic cues in women with bulimia nervosa symptoms
Cited by: 1
Author(s): Isabel Hernández-Rivero, Jens Blechert, Laura Miccoli, Katharina Naomi Eichin, M. Carmen Fernández‐Santaella, Rafael Delgado-Rodríguez
Software Mentions: 1
Published: almost 5 years ago

10.1093/jxb/eru255

PEG-mediated osmotic stress induces premature differentiation of the root apical meristem and outgrowth of lateral roots in wheat
Cited by: 76
Author(s): Hongtao Ji, Ling Liu, Kexue Li, Xie Qingen, Zhijuan Wang, Xiuhua Zhao, Xia Li
Software Mentions: 1
Published: about 12 years ago

10.1093/jxb/eru482

Meristem size contributes to the robustness of phyllotaxis in Arabidopsis
Cited by: 40
Author(s): Benoît Landrein, Yassin Refahi, Fabrice Besnard, Nathan Hervieux, Vincent Mirabet, Arezki Boudaoud, Teva Vernoux, Olivier Hamant
Software Mentions: 1
Published: over 11 years ago

10.1093/jxb/ery442

A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice
Cited by: 5
Author(s): Sadia Nadir, Wei Li, Qian Zhu, Sehroon Khan, Xiaoling Zhang, Hui Zhang, Zhen-Fei Wei, Meng-Ting Li, Li Zhou, Chengyun Li, Lijuan Chen, Dong‐Sun Lee
Software Mentions: 1
Published: over 7 years ago

10.1093/jxb/eraa209

Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis
Cited by: 20
Author(s): Jinmi Yoon, Lae-Hyeon Cho, Wei Yang, Richa Pasriga, Yunfei Wu, Woo‐Jong Hong, Charlotte Bureau, Soo Jin Wi, Tao Zhang, Rongchen Wang, Dabing Zhang, Kyungsook Jung, Ky Young Park, Christophe Périn, Yunde Zhao, Gynheung An
Software Mentions: 1
Published: about 6 years ago

10.1093/jxb/erab058

Resolving a QTL complex for height, heading, and grain yield on chromosome 3A in bread wheat
Cited by: 8
Author(s): Alba Farre Martinez, Clare Lister, Sue Freeman, Jun Ma, Simon Berry, Luzie U. Wingen, Simon Griffiths
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.0020011

Genome-Wide Screen for Salmonella Genes Required for Long-Term Systemic Infection of the Mouse
Cited by: 315
Author(s): Trevor D. Lawley, Kaman Chan, Lucinda J. Thompson, Charles C. Kim, Gregory Govoni, Denise M. Monack
Software Mentions: 1
Published: over 20 years ago

10.1371/journal.ppat.0030022

A Link between Virulence and Homeostatic Responses to Hypoxia during Infection by the Human Fungal Pathogen Cryptococcus neoformans
Cited by: 161
Author(s): Cheryl D. Chun, Oliver W. Liu, Hiten D. Madhani
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.0030050

Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA
Cited by: 319
Author(s): Robyn M. Perrin, Natalie D. Fedorova, Jin Woo Bok, Robert A. Cramer, Jennifer Wortman, Heenam Stanley Kim, William C. Nierman, Nancy P. Keller
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.0030083

Gene Expression Profiles of Chlamydophila pneumoniae during the Developmental Cycle and Iron Depletion–Mediated Persistence
Cited by: 81
Author(s): André P. Mäurer, Adrian Mehlitz, Hans-Joachim Mollenkopf, Thomas F. Meyer
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.ppat.0040006

Distinct TLR- and NLR-Mediated Transcriptional Responses to an Intracellular Pathogen
Cited by: 198
Author(s): Jess H. Leber, Gregory T. Crimmins, Sridharan Raghavan, Nicole Meyer-Morse, Jeffery S. Cox, Daniel A. Portnoy
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.1000155

Importance of Mitochondria in Survival of Cryptococcus neoformans Under Low Oxygen Conditions and Tolerance to Cobalt Chloride
Cited by: 65
Author(s): Susham S. Ingavale, Yun C. Chang, Hyeseung Lee, Carol M. McClelland, Madeline L. Leong, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1000200

A Sterol-Regulatory Element Binding Protein Is Required for Cell Polarity, Hypoxia Adaptation, Azole Drug Resistance, and Virulence in Aspergillus fumigatus
Cited by: 289
Author(s): Sven D. Willger, Srisombat Puttikamonkul, Kwang-Hyung Kim, James B. Burritt, Nora Grahl, Laurel J. Metzler, Robert J. Barbuch, Martin Bard, Christopher B. Lawrence, Robert A. Cramer
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000229

Identification of Tuberculosis Susceptibility Genes with Human Macrophage Gene Expression Profiles
Cited by: 128
Author(s): Nguyen Thuy Thuong Thuong, Sarah J. Dunstan, Tran Thi Hong Chau, Vésteinn Thórsson, Cameron P. Simmons, Nguyen Than Ha Quyen, Guy Thwaites, Nguyễn Thị Ngọc Lan, Martin L. Hibberd, Yik Ying Teo, Mark Seielstad, Alan Aderem, Jeremy Farrar, Thomas R. Hawn
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000383

Identification of Proteins Targeted by the Thioredoxin Superfamily in Plasmodium falciparum
Cited by: 76
Author(s): Nicole Sturm, Esther Jortzik, Boniface M. Mailu, Saša Končarević, Marcel Deponte, Karl Forchhammer, Stefan Rahlfs, Katja Becker
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000569

Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors
Cited by: 241
Author(s): Christian Flueck, Richárd Bártfai, Jennifer Volz, Igor Niederwieser, Adriana M. Salcedo‐Amaya, Blaise T. F. Alako, Florian Ehlgen, Stuart A. Ralph, Alan F. Cowman, Zbynek Bozdech, Hendrik G. Stunnenberg, Till S. Voss
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.ppat.1000737

Histone Deacetylases Play a Major Role in the Transcriptional Regulation of the Plasmodium falciparum Life Cycle
Cited by: 127
Author(s): Balbir K. Chaal, Anjali Gupta, Brigitta Wastuwidyaningtyas, Yen-Hoon Luah, Zbynek Bozdech
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1000783

Transit through the Flea Vector Induces a Pretransmission Innate Immunity Resistance Phenotype in Yersinia pestis
Cited by: 117
Author(s): Viveka Vadyvaloo, Clayton O. Jarrett, Daniel E. Sturdevant, Florent Sebbane, B. Joseph Hinnebusch
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1000848

Cryptococcus neoformans Overcomes Stress of Azole Drugs by Formation of Disomy in Specific Multiple Chromosomes
Cited by: 377
Author(s): Edward Sionov, Hyeseung Lee, Yun C. Chang, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1001026

DNA Damage Triggers Genetic Exchange in Helicobacter pylori
Cited by: 109
Author(s): Marion S. Dorer, Jutta Fero, Nina R. Salama
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1001065

Reciprocal Analysis of Francisella novicida Infections of a Drosophila melanogaster Model Reveal Host-Pathogen Conflicts Mediated by Reactive Oxygen and imd-Regulated Innate Immune Response
Cited by: 69
Author(s): Madeleine G. Moule, Denise M. Monack, David Schneider
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1001102

A Bistable Switch and Anatomical Site Control Vibrio cholerae Virulence Gene Expression in the Intestine
Cited by: 94
Author(s): Alex Toftgaard Nielsen, Nadia Dolganov, Thomas Høj Rasmussen, G Otto, Michael C. Miller, Stephen A. Felt, Stéphanie L Torreilles, Gary K. Schoolnik
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1003210

Candida albicans White and Opaque Cells Undergo Distinct Programs of Filamentous Growth
Cited by: 77
Author(s): Haoyu Si, Aaron D. Hernday, Matthew P. Hirakawa, Alexander D. Johnson, Richard J. Bennett
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003268

Puf Mediates Translation Repression of Transmission-Blocking Vaccine Candidates in Malaria Parasites
Cited by: 67
Author(s): Jun Miao, Qi Fan, Daniel M. Parker, Xiaolian Li, Jianyong Li, Liwang Cui
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003448

Transcriptome Analyses of Inhibitor-treated Schistosome Females Provide Evidence for Cooperating Src-kinase and TGFβ Receptor Pathways Controlling Mitosis and Eggshell Formation
Cited by: 45
Author(s): Christin Buro, Kátia C. Oliveira, Zhigang Lu, Silke Leutner, Svenja Beckmann, Colette Dissous, Kátia Cailliau, Sérgio Verjovski-Almeida, Christoph G. Grevelding
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1003445

An Extracellular Subtilase Switch for Immune Priming in Arabidopsis
Cited by: 99
Author(s): Vicente Ramírez, Ana López, Brigitte Mauch‐Mani, Ma José Gil, Pablo Vera
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1006577

Innate activation of human primary epithelial cells broadens the host response to Mycobacterium tuberculosis in the airways
Cited by: 42
Author(s): Ann-Kathrin Reuschl, Michael R. Edwards, Robert Parker, David Connell, Long Hoàng, Alice Halliday, Hannah Jarvis, Nazneen Siddiqui, C. A. Wright, Samuel Bremang, Sandra M. Newton, Peter C. L. Beverley, Robin J. Shattock, Onn Min Kon, Ajit Lalvani
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006722

Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo
Cited by: 54
Author(s): Rie Furuta, Jun-ichirou Yasunaga, Michi Miura, Kenji Sugata, Akatsuki Saito, Hirofumi Akari, Takaharu Ueno, Norihiro Takenouchi, Jun Fujisawa, Ki Ryang Koh, Yusuke Higuchi, Mohamed Mahgoub, Masakazu Shimizu, Fumihiko Matsuda, Anat Melamed, Charles R. M. Bangham, Masao Matsuoka
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007810

Cucumber mosaic virus infection as a potential selective pressure on Arabidopsis thaliana populations
Cited by: 33
Author(s): Núria Montés, Carlos Alonso‐Blanco, Fernando Garcı́a-Arenal
Software Mentions: 1
Published: about 7 years ago

10.1002/pmrj.12508

Understanding Changes in Physical Activity among Lower Limb Prosthesis Users: A COVID ‐19 Case Series
Cited by: 3
Author(s): Akshay S Tolani, Shane R. Wurdeman, Bryce Billing, Erin M. O’Brien, Dwiesha L. England, Phillip M. Stevens, Aaron Flores
Software Mentions: 1
Published: over 5 years ago

10.3390/polym11020307

Scanning Auger Microscopy Studies of Silane Films Grown on Plasma-Modified HOPG Surfaces
Cited by: 2
Author(s): Jade K. Taylor, Jasmine R. Wiese, Sarah L. Harmer
Software Mentions: 1
Published: over 7 years ago

10.3390/polym13091521

Endochondral Ossification Induced by Cell Transplantation of Endothelial Cells and Bone Marrow Stromal Cells with Copolymer Scaffold Using a Rat Calvarial Defect Model
Cited by: 1
Author(s): Zhe Xing, Xiaofeng Jiang, Qingzong Si, Anna Finne‐Wistrand, Bin Liu, Ying Xue, Kamal Mustafa
Software Mentions: 1
Published: about 5 years ago

10.1186/1478-7954-10-18

Sentinel site community surveillance of mortality and nutritional status in southwestern Central African Republic, 2010
Cited by: 22
Author(s): Grazia Caleo, Aly Penda Sy, Serge Balandine, Jonathan Polonsky, Pedro Pablo Palma, Rebecca F. Grais, Francesco Checchi
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.pmedr.2021.101427

The integrated screening action model (I-SAM): A theory-based approach to inform intervention development
Cited by: 13
Author(s): Kathryn A. Robb
Software Mentions: 1
Published: almost 5 years ago

10.1073/pnas.1904903116

Biosynthesis of the nitrogenase active-site cofactor precursor NifB-co in <i>Saccharomyces cerevisiae</i>
Cited by: 27
Author(s): Stefan Burén, Katelin Pratt, Xi Jiang, Yisong Guo, Emilio Jiménez-Vicente, Carlos Echavarri‐Erasun, Dennis R. Dean, Ishtiaq Saaem, D. Benjamin Gordon, Christopher A. Voigt, Luis M. Rubio
Software Mentions: 1
Published: over 6 years ago

10.1186/1477-5956-7-2

Glycoproteomic analysis of two mouse mammary cell lines during transforming growth factor (TGF)-beta induced epithelial to mesenchymal transition
Cited by: 35
Author(s): Jonathan D. Hill, Tammy-Lynn Tremblay, Christiane Cantin, Maureen D. O’Connor-McCourt, John F. Kelly, Anne E.G. Lenferink
Software Mentions: 1
Published: over 17 years ago

10.1186/1477-5956-7-29

Large-scale analysis of protein expression changes in human keratinocytes immortalized by human papilloma virus type 16 E6 and E7 oncogenes
Cited by: 32
Author(s): Mark A. Merkley, Ellen Hildebrandt, Robert H. Podolsky, Hilal Arnouk, Daron G. Ferris, William S. Dynan, Hubert Stöppler
Software Mentions: 1
Published: almost 17 years ago

10.1186/1477-5956-10-71

An antibody microarray analysis of serum cytokines in neurodegenerative Parkinsonian syndromes
Cited by: 22
Author(s): Philipp Mahlknecht, Sylvia Stemberger, Fabienne Sprenger, Johannes Michael Rainer, Eva Hametner, Rudolf Kirchmair, Christoph Grabmer, Christoph Scherfler, Gregor K. Wenning, Klaus Seppi, Werner Poewe, Markus Reindl
Software Mentions: 1
Published: over 13 years ago

10.5334/pb.340

A French Translation of the Pleasure Arousal Dominance (PAD) Semantic Differential Scale for the Measure of Affect and Drive
Cited by: 10
Author(s): Sandrine Detandt, Christophe Leys, Ariane Bazan
Software Mentions: 1
Published: over 9 years ago

10.3758/s13423-015-0991-4

On testing the strength independence assumption in retrieval-induced forgetting
Cited by: 5
Author(s): Jeroen G. W. Raaijmakers
Software Mentions: 1
Published: over 10 years ago

10.1007/s00213-019-05314-z

Alcohol, empathy, and morality: acute effects of alcohol consumption on affective empathy and moral decision-making
Cited by: 13
Author(s): Kathryn B. Francis, Michaela Gummerum, Giorgio Ganis, Ian S. Howard, Sylvia Terbeck
Software Mentions: 1
Published: about 7 years ago

10.1017/S1368980018003282

Brain MRI and cognitive function seven years after surviving an episode of severe acute malnutrition in a cohort of Malawian children
Cited by: 19
Author(s): Natasha Lelijveld, Alhaji Alusine Jalloh, Samuel Kampondeni, Andrew Seal, Jonathan C. K. Wells, Magdalena Goyheneix, Emmanuel Chimwezi, Macpherson Mallewa, Moffat Nyirenda, Robert S. Heyderman, Marko Kerac
Software Mentions: 1
Published: over 7 years ago

10.1098/rsos.150593

The visual gamma response to faces reflects the presence of sensory evidence and not awareness of the stimulus
Cited by: 4
Author(s): Gavin Perry
Software Mentions: 1
Published: over 10 years ago

10.1098/rsos.160824

Changeable camouflage: how well can flounder resemble the colour and spatial scale of substrates in their natural habitats?
Cited by: 21
Author(s): Derya Akkaynak, Liese A. Siemann, Alexandra Barbosa, Lydia M. Mäthger
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.170050

TSNAD: an integrated software for cancer somatic mutation and tumour-specific neoantigen detection
Cited by: 54
Author(s): Zhan Zhou, Xingzheng Lyu, Jingcheng Wu, Xiaoyue Yang, Shanshan Wu, Jié Zhou, Xun Gu, Zhixi Su, Shuqing Chen
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.170233

Taxonomic review of the late Cenozoic megapodes (Galliformes: Megapodiidae) of Australia
Cited by: 11
Author(s): Elen Shute, Gavin J. Prideaux, Trevor H. Worthy
Software Mentions: 1
Published: about 9 years ago

10.1098/rsos.201081

Identification of candidate genes controlling chilling tolerance of rice in the cold region at the booting stage by BSA-Seq and RNA-Seq
Cited by: 14
Author(s): Zhenhua Guo, Lijun Cai, Zhiqiang Chen, Ruiying Wang, Lanming Zhang, Shiwu Guan, Shuhua Zhang, Wendong Ma, Chuanxue Liu, Guoqing Pan
Software Mentions: 1
Published: over 5 years ago

10.1186/1748-717X-6-42

Gene expression profiling of human dermal fibroblasts exposed to bleomycin sulphate does not differentiate between radiation sensitive and control patients
Cited by: 4
Author(s): Charlotte Westbury, Kristine Kleivi Sahlberg, Anne‐Lise Børresen‐Dale, Clare M. Isacke, John Yarnold
Software Mentions: 1
Published: over 15 years ago

10.1186/s13014-020-01486-7

Acoustic diagnosis of elastic properties of human tooth by 320 MHz scanning acoustic microscopy after radiotherapy treatment for head and neck cancer
Cited by: 4
Author(s): Irem Demirkan, Gökhan Yaprak, Cemile Ceylan, Emriye Algül, Ceyda Özçakır Tomruk, Bükem Bilen, Mehmet Ünlü
Software Mentions: 1
Published: over 6 years ago

10.1186/s13014-021-01872-9

Dosimetric benefits of daily treatment plan adaptation for prostate cancer stereotactic body radiotherapy
Cited by: 3
Author(s): Miriam Eckl, Gustavo R. Sarria, Sandra Springer, Marvin Willam, Arne Mathias Ruder, Volker Steil, Michael Ehmann, Frederik Wenz, Jens Fleckenstein
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.redox.2019.101280

Utilizing redox-sensitive GFP fusions to detect in vivo redox changes in a genetically engineered prokaryote
Cited by: 15
Author(s): Wilhad Hans Reuter, Thorsten Masuch, Na Ke, Marine Lénon, Meytal Radzinski, Vu Van Loi, Guoping Ren, Paul Riggs, Haike Antelmann, Dana Reichmann, Lars I. Leichert, Mehmet Berkmen
Software Mentions: 1
Published: almost 7 years ago

10.1186/1477-7827-4-39

Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays
Cited by: 111
Author(s): Julien Bobe, Jérôme Montfort, Nguyen Tri, Alexis Fostier
Software Mentions: 1
Published: about 20 years ago

10.1186/1477-7827-7-45

Analysis of gene expression profiles in HeLa cells in response to overexpression or siRNA-mediated depletion of NASP
Cited by: 24
Author(s): Oleg Alekseev, Richard T. Richardson, Oleg Alekseev, Michael G. O’Rand
Software Mentions: 1
Published: about 17 years ago

10.1186/1477-7827-9-29

MicroRNA array and microarray evaluation of endometrial receptivity in patients with high serum progesterone levels on the day of hCG administration
Cited by: 90
Author(s): Rong Li, Jie Qiao, Lina Wang, L i Li, Xiumei Zhang, Ping Liu, Xiaoying Zheng
Software Mentions: 1
Published: over 15 years ago

10.1186/s12931-018-0795-y

A candidate gene identification strategy utilizing mouse to human big-data mining: “3R-tenet” in COPD genetic research
Cited by: 4
Author(s): Sangeetha Vishweswaraiah, Leema George, Purushothaman Natarajan, Koustav Ganguly
Software Mentions: 1
Published: about 8 years ago

10.1186/s12931-018-0857-1

Comprehensive gene expression profiling identifies distinct and overlapping transcriptional profiles in non-specific interstitial pneumonia and idiopathic pulmonary fibrosis
Cited by: 56
Author(s): Matthew J. Cecchini, Karishma Hosein, Christopher J. Howlett, Mariamma Joseph, Marco Mura
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12931-019-1257-x

Construction of asthma related competing endogenous RNA network revealed novel long non-coding RNAs and potential new drugs
Cited by: 16
Author(s): Yifang Liao, Ping Li, Yanxia Wang, Hong Chen, Shangwei Ning, Dongju Su
Software Mentions: 1
Published: over 6 years ago

10.1186/1742-4690-10-118

Characterization of simian T-cell leukemia virus type 1 in naturally infected Japanese macaques as a model of HTLV-1 infection
Cited by: 35
Author(s): Michi Miura, Jun-ichirou Yasunaga, Junko Tanabe, Kenji Sugata, Tiejun Zhao, Guangyong Ma, Paola Miyazato, Koichi Ohshima, Akihisa Kaneko, A. Watanabe, Akatsuki Saito, Hirofumi Akari, Masao Matsuoka
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12977-018-0454-x

Distinct gene expression signatures induced by viral transactivators of different HTLV-1 subgroups that confer a different risk of HAM/TSP
Cited by: 13
Author(s): Tadasuke Naito, Jun‐ichirou Yasunaga, Yuichi Mitobe, Kazumasa Shirai, Hiroe Sejima, Hiroshi Ushirogawa, Yuetsu Tanaka, Tatsufumi Nakamura, Kousuke Hanada, Masahiro Fujii, Masao Matsuoka, Mineki Saito
Software Mentions: 1
Published: over 7 years ago

10.1038/srep10720

Myo-inositol improves the host’s ability to eliminate balofloxacin-resistant Escherichia coli
Cited by: 45
Author(s): Xinhai Chen, Bing-wen Zhang, Hui Li, Xuan‐xian Peng
Software Mentions: 1
Published: about 11 years ago

10.1038/srep45806

Frequency-dependent oscillatory neural profiles during imitation
Cited by: 5
Author(s): Hisato Sugata, Masayuki Hirata, Yuichi Tamura, Hisao Onishi, Tetsu Goto, Toshihiko Araki, Shiro Yorifuji
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00405-3

MicroRNA-140-5p regulates osteosarcoma chemoresistance by targeting HMGN5 and autophagy
Cited by: 47
Author(s): Yichen Meng, Rui Gao, Jun Ma, Jinqiu Zhao, Enjie Xu, Ce Wang, Xuhui Zhou
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01167-8

MicroRNA expression profiling defines the impact of electronic cigarettes on human airway epithelial cells
Cited by: 48
Author(s): Siva Kumar Solleti, Soumyaroop Bhattacharya, Auṣāf Aḥmad, Qian Wang, Jared A. Mereness, Tirumalai Rangasamy, Thomas J. Mariani
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01392-1

Hypertension reduces soluble guanylyl cyclase expression in the mouse aorta via the Notch signaling pathway
Cited by: 36
Author(s): Catarina Rippe, Baoyi Zhu, Katarzyna Krawczyk, Ed VanBavel, Sebastian Albinsson, Jonas Sjölund, Erik N. T. P. Bakker, Karl Swärd
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-01913-y

ALOX5 exhibits anti-tumor and drug-sensitizing effects in MLL-rearranged leukemia
Cited by: 22
Author(s): Yungui Wang, Jennifer R. Skibbe, Chao Hu, Lei Dong, Kyle Ferchen, Rui Su, Chenying Li, Hao Huang, Hengyou Weng, Huilin Huang, Xi Qin, Jie Jin, Jianjun Chen, Xi Jiang
Software Mentions: 1
Published: about 9 years ago

Projects: cran: SAM

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning SAM 4,566