cran: SAM | Projects | Ecosyste.ms: Papers

10.1289/ehp.1104282

Inflammatory Pathway Genes Belong to Major Targets of Persistent Organic Pollutants in Adipose Cells
Cited by: 143
Author(s): Min Ji Kim, Véronique Pelloux, Erwan Guyot, Joan Tordjman, Linh‐Chi Bui, Aline Chevallier, Claude Forest, C Benelli, Karine Clément, Robert Barouki
Software Mentions: 1
Published: over 14 years ago

10.1289/txg.7204

Prediction of Toxicant-Specific Gene Expression Signatures after Chemotherapeutic Treatment of Breast Cell Lines
Cited by: 11
Author(s): Melissa A. Troester, Katherine A. Hoadley, Joel S. Parker, Charles M. Perou
Software Mentions: 1
Published: almost 22 years ago

10.4178/epih.e2020003

Recovery time from severe acute malnutrition and associated factors among under-5 children in Yekatit 12 Hospital, Addis Ababa, Ethiopia: a retrospective cohort study
Cited by: 9
Author(s): Mekonen Adimasu, Girum Sebsibie, Fikrtemariam Abebe, Getaneh Baye, Kerebih Abere
Software Mentions: 1
Published: over 6 years ago

10.1186/s13072-016-0084-2

The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements
Cited by: 29
Author(s): Elena M. Pugacheva, Evgeny Teplyakov, Qiongfang Wu, Jingjing Li, Chen Cheng, Chengcheng Meng, Jian Liu, Susan Robinson, Dmitry Loukinov, Abdelhalim Boukaba, Andrew P. Hutchins, Victor Lobanenkov, Alexander Strunnikov
Software Mentions: 1
Published: about 10 years ago

10.1186/1756-8935-6-18

Constitutional trisomy 8 mosaicism as a model for epigenetic studies of aneuploidy
Cited by: 20
Author(s): Josef Davidsson, Srinivas Veerla, Bertil Johansson
Software Mentions: 1
Published: about 13 years ago

10.1186/1756-8935-4-7

Extensive epigenetic reprogramming in human somatic tissues between fetus and adult
Cited by: 58
Author(s): Ryan K. C. Yuen, Sarah Neumann, Alexandra Fok, Maria S. Peñaherrera, Deborah E. McFadden, Wendy P. Robinson, Michæl S. Kobor
Software Mentions: 1
Published: over 15 years ago

10.1111/j.1365-2362.2010.02437.x

The effect of next-generation sequencing technology on complex trait research
Cited by: 52
Author(s): Aaron G. Day‐Williams, Eleftheria Zeggini
Software Mentions: 1
Published: almost 16 years ago

10.1111/ejn.12520

Localizing evoked and induced responses to faces using magnetoencephalography
Cited by: 19
Author(s): Gavin Perry, Krish Devi Singh
Software Mentions: 1
Published: over 12 years ago

10.1111/j.1460-9568.2011.07777.x

Retinotopic mapping of the primary visual cortex - a challenge for MEG imaging of the human cortex
Cited by: 15
Author(s): Gavin Perry, Peyman Adjamian, Ngoc Jade Thai, Ian Holliday, Arjan Hillebrand, Gareth R. Barnes
Software Mentions: 1
Published: about 15 years ago

10.1007/s00394-020-02200-9

Synbiotic supplementation with prebiotic green banana resistant starch and probiotic Bacillus coagulans spores ameliorates gut inflammation in mouse model of inflammatory bowel diseases
Cited by: 50
Author(s): Rajaraman Eri, Agampodi Promoda Perera, Ravichandra Vemuri, Shakuntla Gondalia, David J. Beale, Avinash V. Karpe, Sonia Shastri, Waheedha Basheer, Benjamin Southam, Roger Stanley
Software Mentions: 1
Published: over 6 years ago

10.1111/eos.12079

Can you read my pokerface? A study on sex differences in dentophobia
Cited by: 5
Author(s): Verena Leutgeb, Sonja Übel, Anne Schienle
Software Mentions: 1
Published: about 13 years ago

10.5964/ejop.v14i3.1593

Effect of congruence between sound and video on heart rate and self-reported measures of emotion
Cited by: 1
Author(s): Sebastián Calderón, Raúl Rincón Flórez, Andrés Araujo, Carlos Gantiva
Software Mentions: 1
Published: about 8 years ago

10.3402/ejpt.v6.27882

Mobile mental health: a challenging research agenda
Cited by: 177
Author(s): Miranda Olff
Software Mentions: 1
Published: over 11 years ago

10.3402/ejpt.v6.28545

Early interventions: from e-health to neurobiology
Cited by: 10
Author(s): Miranda Olff, Mirjam van Zuiden, Anne Bakker
Software Mentions: 1
Published: over 11 years ago

10.1183/13993003.01301-2016

Long-term effects of severe acute malnutrition on lung function in Malawian children: a cohort study
Cited by: 23
Author(s): Natasha Lelijveld, Marko Kerac, Andrew Seal, Emmanuel Chimwezi, Jonathan C. K. Wells, Robert S. Heyderman, Moffat Nyirenda, Janet Stocks, Jane Kirkby
Software Mentions: 1
Published: over 9 years ago

10.1111/eva.12581

Call of the wild rice: Oryza rufipogon shapes weedy rice evolution in Southeast Asia
Cited by: 42
Author(s): Cynthia C. Vigueira, Xuchen Qi, Beng Kah Song, Lin Feng Li, Ana L. Caicedo, Yulin Jia, Kenneth M. Olsen
Software Mentions: 1
Published: over 8 years ago

10.1186/s40164-016-0032-7

Identification of AIM2 as a downstream target of JAK2V617F
Cited by: 15
Author(s): Ei Leen Liew, Marito Araki, Yumi Hironaka, Seiichi Mori, Tuan Zea Tan, Soji Morishita, Yoko Edahiro, Akimichi Ohsaka, Norio Komatsu
Software Mentions: 1
Published: almost 11 years ago

10.12688/f1000research.9762.1

Viewing RNA-seq data on the entire human genome
Cited by: 2
Author(s): Eric Weitz, Lorena Pantano, Jingzhi Zhu, Bennett Upton, Ben Busby
Software Mentions: 1
Published: over 9 years ago

10.12688/f1000research.25088.2

Affective rating of audio and video clips using the EmojiGrid
Cited by: 2
Author(s): Alexander Toet, J.B.F. van Erp
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.1-2.v2

Considerations for clinical read alignment and mutational profiling using next-generation sequencing
Cited by: 6
Author(s): Gavin R. Oliver
Software Mentions: 1
Published: almost 14 years ago

10.12688/f1000research.6255.1

Short-term effect of acute and repeated urinary bladder inflammation on thigmotactic behaviour in the laboratory rat
Cited by: 14
Author(s): Rosie Morland, Amparo Novejarque, Wenlong Huang, Rachel Wodarski, Franziska Denk, J. D. K. Dawes, T. Pheby, Stephen B. McMahon, Andrew S.C. Rice
Software Mentions: 1
Published: over 11 years ago

10.12688/f1000research.4734.3

Anterior and posterior subareas of the dorsolateral frontal cortex in socially relevant decisions based on masked affect expressions
Cited by: 2
Author(s): Denise Prochnow, Sascha Brunheim, Hannes Kossack, Simon B. Eickhoff, Hans J. Markowitsch, Rüdiger J. Seitz
Software Mentions: 1
Published: about 11 years ago

10.1007/s10689-014-9728-1

Distinct gene expression profiles in ovarian cancer linked to Lynch syndrome
Cited by: 17
Author(s): Jenny-Maria Jönsson, Katarina Bartuma, Mev Dominguez‐Valentin, Katja Harbst, Zohreh Ketabi, Susanne Malander, Mats Jönsson, Ana Carneiro, Anna Måsbäck, Göran Jönsson, Mef Nilbert
Software Mentions: 1
Published: over 12 years ago

10.1016/j.fochx.2019.100035

Toward on-site food authentication using nanopore sequencing
Cited by: 16
Author(s): Marleen M. Voorhuijzen-Harink, Rico Hagelaar, Jeroen P. van Dijk, T.W. Prins, E.J. Kok, Martijn Staats
Software Mentions: 1
Published: over 7 years ago

10.3390/foods4020130

A Prospective Randomized Double-Blind Study Evaluating UP165 and S-Adenosyl-l-Methionine on Depression, Anxiety and Psychological Well-Being
Cited by: 2
Author(s): Douglas Kalman, Steven R. Feldman, Rafeal Rivas Vazquez, Diane Krieger
Software Mentions: 1
Published: over 11 years ago

10.3389/fnagi.2017.00395

Salicylate-Induced Suppression of Electrically Driven Activity in Brain Slices from the Auditory Cortex of Aging Mice
Cited by: 6
Author(s): Minoru Namikawa, Sano Ayaka, Toshitake Tateno
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnagi.2013.00065

Nodes and biological processes identified on the basis of network analysis in the brain of the senescence accelerated mice as an Alzheimer's disease animal model
Cited by: 40
Author(s): Xiaorui Cheng, Xiuliang Cui, Yue Zheng, Guirong Zhang, Peng Li, Huang Huang, Yue-Ying Zhao, Xiaochen Bo, Shengqi Wang, Wen Zhou, Yongxiang Zhang
Software Mentions: 1
Published: over 13 years ago

10.3389/fnagi.2016.00040

Identifying Dysfunctional Cortex: Dissociable Effects of Stroke and Aging on Resting State Dynamics in MEG and fMRI
Cited by: 51
Author(s): Aneta Kielar, Tiffany Deschamps, Ron Chu, Regina Jokel, Yasha B. Khatamian, Jean Chen, Jed A. Meltzer
Software Mentions: 1
Published: over 10 years ago

10.3389/fnagi.2021.687456

ADVIAN: Alzheimer's Disease VGG-Inspired Attention Network Based on Convolutional Block Attention Module and Multiple Way Data Augmentation
Cited by: 37
Author(s): Shuihua Wang, Qinghua Zhou, Ming Yang, Yudong Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fnbeh.2018.00270

Common Recruitment of Angular Gyrus in Episodic Autobiographical Memory and Bodily Self-Consciousness
Cited by: 28
Author(s): Lucie Bréchet, Petr Grivaz, Baptiste Gauthier, Olaf Blanke
Software Mentions: 1
Published: almost 8 years ago

10.3389/fnbeh.2014.00121

Neuropeptide S and BDNF gene expression in the amygdala are influenced by social decision-making under stress
Cited by: 32
Author(s): Justin Smith, Justin K. Achua, Tangi R. Summers, Patrick J. Ronan, Cliff H. Summers
Software Mentions: 1
Published: over 12 years ago

10.3389/fnbeh.2014.00449

Episodic memory and self-reference via semantic autobiographical memory: insights from an fMRI study in younger and older adults
Cited by: 27
Author(s): Sandrine Kalenzaga, Marco Sperduti, AdÃ ̈le Anssens, Pénélope Martinelli, Anne-Dominique Devauchelle, Thierry Gallarda, Marion Delhommeau, StÃ©phanie Lion, Isabelle Amado, Marie‐Odile Krebs, Catherine Oppenheim, Pascale Piolino
Software Mentions: 1
Published: over 11 years ago

10.3389/fnbeh.2020.00089

Automatic Reappraisal-Based Implementation Intention Produces Early and Sustainable Emotion Regulation Effects: Event-Related Potential Evidence
Cited by: 12
Author(s): Shengdong Chen, Kang Yang Trevor Yu, Jiemin Yang, Jiajin Yuan
Software Mentions: 1
Published: about 6 years ago

10.3389/fnbeh.2018.00225

Frontal EEG Asymmetry and Middle Line Power Difference in Discrete Emotions
Cited by: 73
Author(s): Guoguang Zhao, Yulin Zhang, Yan Ge
Software Mentions: 1
Published: almost 8 years ago

10.3389/fnbeh.2014.00370

Winning the game: brain processes in expert, young elite and amateur table tennis players
Cited by: 28
Author(s): Sebastian Wolf, Ellen Brölz, David Scholz, Ander Ramos-Murguialday, Philipp M. Keune, Martin Hautzinger, Niels Birbaumer, Ute Strehl
Software Mentions: 1
Published: almost 12 years ago

10.3389/fbioe.2020.00268

Identification of Pan-Cancer Prognostic Biomarkers Through Integration of Multi-Omics Data
Cited by: 20
Author(s): Ning Zhao, Maozu Guo, Kuanquan Wang, Chunlong Zhang, Xiaoyan Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2019.00031

An EU Perspective on Biosafety Considerations for Plants Developed by Genome Editing and Other New Genetic Modification Techniques (nGMs)
Cited by: 55
Author(s): Michael Eckerstorfer, Marion Dolezel, Andreas Heissenberger, Marianne Miklau, Wolfram Reichenbecher, Ricarda A. Steinbrecher, Friedrich Waßmann
Software Mentions: 1
Published: over 7 years ago

10.3389/fbioe.2020.00553

Identification of a Multi–Long Noncoding RNA Signature for the Diagnosis of Type 1 Diabetes Mellitus
Cited by: 11
Author(s): Guannan Geng, Zicheng Zhang, Cheng Liang
Software Mentions: 1
Published: about 6 years ago

10.3389/fbioe.2018.00146

Hydrogen Peroxide-Based Fluorometric Assay for Real-Time Monitoring of SAM-Dependent Methyltransferases
Cited by: 8
Author(s): M. Kalim Akhtar, Dhanya Vijay, Saima Umbreen, Chris McLean, Yizhi Cai, Dominic J. Campopiano, Gary J. Loake
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcell.2021.690373

Oleic Acid Protects Caenorhabditis Mothers From Mating-Induced Death and the Cost of Reproduction
Cited by: 9
Author(s): Leo Sungwong Choi, Cheng Shi, Jasmine Ashraf, Salman Sohrabi, Coleen T. Murphy
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2019.00269

Multidisciplinary and Comparative Investigations of Potential Psychobiotic Effects of Lactobacillus Strains Isolated From Newborns and Their Impact on Gut Microbiota and Ileal Transcriptome in a Healthy Murine Model
Cited by: 17
Author(s): Bo Ram Beck, Gun-Seok Park, Do Yeun Jeong, Yong Hyun Lee, Sunghoon Im, Won Ho Song, Jihee Kang
Software Mentions: 1
Published: about 7 years ago

10.3389/fchem.2018.00068

How Diverse Are the Protein-Bound Conformations of Small-Molecule Drugs and Cofactors?
Cited by: 7
Author(s): Nils-Ole Friedrich, Méliné Simsir, Johannes Kirchmair
Software Mentions: 1
Published: over 8 years ago

10.3389/fncom.2013.00093

Graph theoretical analysis of resting magnetoencephalographic functional connectivity networks
Cited by: 30
Author(s): Lindsay Rutter, Sreenivasan Rajamoni Nadar, Tom Holroyd, Frederick W. Carver, José Apud, Daniel R. Weinberger, Richard Coppola
Software Mentions: 1
Published: over 13 years ago

10.3389/fncom.2015.00149

Neural Network Model of Memory Retrieval
Cited by: 29
Author(s): Stefano Recanatesi, Mikhail Katkov, Sandro Romani, Misha Tsodyks
Software Mentions: 1
Published: almost 11 years ago

10.3389/fncom.2017.00119

Dynamic Hebbian Cross-Correlation Learning Resolves the Spike Timing Dependent Plasticity Conundrum
Cited by: 4
Author(s): Tjeerd Olde Scheper, Rhiannon M. Meredith, Huibert D. Mansvelder, Jaap van Pelt, Arjen van Ooyen
Software Mentions: 1
Published: over 8 years ago

10.3389/fendo.2014.00133

Gene Expression Profiling in Mouse Embryonic Stem Cells Reveals Glycogen Synthase Kinase-3-Dependent Targets of Phosphatidylinositol 3-Kinase and Wnt/Î²-Catenin Signaling Pathways
Cited by: 8
Author(s): Colleen M. Bartman, Jennifer N. Egelston, Sravya Kattula, Leigh C. Zeidner, Anthony D’Ippolito, Bradley W. Doble, Christopher J. Phiel
Software Mentions: 1
Published: about 12 years ago

10.3389/fendo.2020.574662

Genetic and Clinical Profiles of Pheochromocytoma and Paraganglioma: A Single Center Study
Cited by: 11
Author(s): Xiaosen Ma, Ming Li, Anli Tong, Fen Wang, Yunying Cui, Xuebin Zhang, Yushi Zhang, Shi Chen, Yuxiu Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fendo.2021.605797

Identification of Clinical Relevant Molecular Subtypes of Pheochromocytoma
Cited by: 2
Author(s): Umair Ali Khan Saddozai, Fengling Wang, Muhammad Usman Akbar, Lu Zhang, Yang An, Wan Zhu, Longxiang Xie, Yongqiang Li, Xin‐Ying Ji, Xiangqian Guo
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2018.00678

Integration of Proteomics and Metabolomics Revealed Metabolite–Protein Networks in ACTH-Secreting Pituitary Adenoma
Cited by: 22
Author(s): Jiaxuan Feng, Qi Zhang, Yang Zhou, Shenyuan Yu, Liu Hong, Sida Zhao, Jingjing Yang, Hong Wan, Guowang Xu, Yazhou Zhang, Chuzhong Li
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2019.01332

Causalcall: Nanopore Basecalling Using a Temporal Convolutional Network
Cited by: 36
Author(s): Jingwen Zeng, Hongmin Cai, Hong Peng, Haiyan Wang, Yue Zhang, Tatsuya Akutsu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00900

NanoReviser: An Error-Correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
Cited by: 16
Author(s): Luotong Wang, Qu Li, Longshu Yang, Yiying Wang, Huaiqiu Zhu
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.01070

Gene Expression and Fatty Acid Profiling in Longissimus thoracis Muscle, Subcutaneous Fat, and Liver of Light Lambs in Response to Concentrate or Alfalfa Grazing
Cited by: 3
Author(s): Elda Dervishi, L. González-Calvo, Mireia Blanco Alibés, M. Joy, P. Sarto, Roberto Martín‐Hernández, José M. Ordovás, M. Serrano, J.H. Calvo
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.683255

Report of the Largest Chinese Cohort With SLC19A3 Gene Defect and Literature Review
Cited by: 8
Author(s): Jia-Ping Wang, Junling Wang, Xiudi Han, Zhimei Liu, Yanli Ma, Chen Guo-hong, Haoya Zhang, Dan Sun, Ruifeng Xu, Yi Liu, Yuqin Zhang, Yongxin Wen, Xinhua Bao, Qian Chen, Fang Fang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00910

A Novel DNA Methylation-Based Signature Can Predict the Responses of MGMT Promoter Unmethylated Glioblastomas to Temozolomide
Cited by: 17
Author(s): Rui‐Chao Chai, Yuzhou Chang, Qiangwei Wang, Ke‐Nan Zhang, Jingjun Li, Hua Huang, Fan Wu, Yuqing Liu, Yongzhi Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2019.00420

Multi-Omic Data Interpretation to Repurpose Subtype Specific Drug Candidates for Breast Cancer
Cited by: 34
Author(s): Beste Turanlı, Kübra Karagoz, Gholamreza Bidkhori, Raghu Sinha, Michael L. Gatza, Mathias Uhlén, Adil Mardinoğlu, Kazım Yalçın Arğa
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2014.00207

Exposure to hycanthone alters chromatin structure around specific gene functions and specific repeats in Schistosoma mansoni
Cited by: 13
Author(s): David Roquis, Julie M. J. Lepesant, Emanuel Villafán, Jã©Rã ́Me Boissier, Cristina Vieira, Cã©Line Cosseau, Christoph Grunau
Software Mentions: 1
Published: about 12 years ago

10.3389/fgene.2014.00016

The struggle to find reliable results in exome sequencing data: filtering out Mendelian errors
Cited by: 45
Author(s): Zubin Patel, Leah C. Kottyan, Sara Lazaro, Marc S. Williams, David H. Ledbetter, Gerard Tromp, Andrew M. Rupert, Mojtaba Kohram, Michael Wagner, Ammar Husami, Yaping Qian, C. Alexander Valencia, Kejian Zhang, Margaret K. Hostetter, John B. Harley, Kenneth M. Kaufman
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2020.511676

Integrated Analysis of lncRNA-miRNA-mRNA ceRNA Network Identified lncRNA EPB41L4A-AS1 as a Potential Biomarker in Non-small Cell Lung Cancer
Cited by: 19
Author(s): Meiqi Wang, Sihan Zheng, Xi Li, Yu Ding, Mingyan Zhang, Lin Lin, Hao Xu, Yue Cheng, Xiaonan Zhang, Hui Xu, Shijun Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2013.00157

MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads
Cited by: 13
Author(s): Yinghua Wu, Lifeng Tian, Mario Pirastu, Dwight Stambolian, Hongzhe Li
Software Mentions: 1
Published: over 13 years ago

10.3389/fgene.2017.00057

Non-coding RNAs in the Ovarian Follicle
Cited by: 19
Author(s): Rosalia Battaglia, Marilena Vento, Placido Borzì, Marco Ragusa, Davide Barbagallo, Desirée Arena, Michele Purrello, Cinzia Di Pietro
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2019.00685

TDNAscan: A Software to Identify Complete and Truncated T-DNA Insertions
Cited by: 20
Author(s): Liang Sun, Yinbing Ge, Jeffrey A. Sparks, Zachary T. Robinson, Xiaofei Cheng, Jiangqi Wen, Elison B. Blancaflor
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2021.672906

Integrated Genome and Transcriptome Sequencing to Solve a Neuromuscular Puzzle: Miyoshi Muscular Dystrophy and Early Onset Primary Dystonia in Siblings of the Same Family
Cited by: 3
Author(s): Feng Zhu, Fengxiao Zhang, Lizhi Hu, Liu Hao-wen, Yahua Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2018.00686

SIRT1 Allele Frequencies in Depressed Patients of European Descent in Russia
Cited by: 6
Author(s): Lyubomir I. Aftanas, М. С. Анисименко, Darya A Berdyugina, Aleksandr Yu Garanin, В. Н. Максимов, М. И. Воевода, N. Vyalova, Н. А. Бохан, Svetlana A. Ivanova, Konstantin V. Danilenko, Sergei Kovalenko
Software Mentions: 1
Published: over 7 years ago

10.3389/fpsyg.2015.00816

Emotional intelligence and recovering from induced negative emotional state
Cited by: 26
Author(s): Joaquín T. Limonero, Jordi Fernández Castro, Jordi Soler-Oritja, María Álvarez-Moleiro
Software Mentions: 1
Published: about 11 years ago

10.3389/fpsyg.2016.00180

Emotion Elicitation: A Comparison of Pictures and Films
Cited by: 95
Author(s): Meike Uhrig, N. Trautmann, Ulf Baumgärtner, Rolf‐Detlef Treede, Florian Henrich, Wolfgang Hiller, Susanne Marschall
Software Mentions: 1
Published: over 10 years ago

10.3389/fpubh.2016.00198

Taking Severe Acute Malnutrition Treatment Back to the Community: Practical Experiences from Nutrition Coverage Surveys
Cited by: 5
Author(s): Lenka Blanárová, Eleanor Rogers, Carine Magen, Sophie Woodhead
Software Mentions: 1
Published: about 10 years ago

10.3389/fvets.2020.547891

Genomic Epidemiology of Salmonella Infantis in Ecuador: From Poultry Farms to Human Infections
Cited by: 23
Author(s): Lorena Mejía, José Luís Medina, Rosa Bayas, Carolina Satan Salazar, Fernando Villavicencio, Sonia Zapata, Jorge Matheu, Jaap A. Wagenaar, Fernando González‐Candelas, Christian Vinueza-Burgos
Software Mentions: 1
Published: almost 6 years ago

10.3389/fvets.2018.00272

Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand
Cited by: 36
Author(s): Marian Price-Carter, Rüdiger Bräuning, de Lisle Gw, Paul Livingstone, Mark A. Neill, JA Sinclair, B.M. Paterson, Gemma C. Atkinson, G.J.E. Knowles, K.B. Crews, Joseph Crispell, Rowland R. Kao, Suelee Robbe‐Austerman, Tod Stuber, Julian Parkhill, James Wood, Simon R. Harris, DM Collins
Software Mentions: 1
Published: almost 8 years ago

10.3389/fvets.2021.593871

Genome Wide Prediction, Mapping and Development of Genomic Resources of Mastitis Associated Genes in Water Buffalo
Cited by: 8
Author(s): Sarika Jaiswal, Jaisri Jagannadham, Juli Kumari, Mir Asif Iquebal, Anoop Kishor Singh Gurjar, Varij Nayan, U. B. Angadi, Sunil Kumar, Rakesh Kumar, Tirtha Kumar Datta, Anil Rai, Dinesh Kumar
Software Mentions: 1
Published: over 5 years ago

10.3389/fvets.2021.619044

The Competitiveness of Beef Exports From Burkina Faso to Ghana
Cited by: 3
Author(s): Karl M. Rich, Abdrahmane Wane
Software Mentions: 1
Published: about 5 years ago

10.3389/fvets.2020.00188

Genetic Variability of 3′-Proximal Region of Genomes of Orf Viruses Isolated From Sheep and Wild Japanese Serows (Capricornis crispus) in Japan
Cited by: 4
Author(s): Kaori Shimizu, Asari Takaiwa, Shin‐nosuke Takeshima, Ayaka Okada, Yasuo Inoshima
Software Mentions: 1
Published: over 6 years ago

10.1186/s12983-015-0132-y

Geographic body size variation in ectotherms: effects of seasonality on an anuran from the southern temperate forest
Cited by: 42
Author(s): Andrés Valenzuela‐Sánchez, Andrew A. Cunningham, Claudio Soto‐Azat
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40694-018-0062-5

Itaconic acid degradation in Aspergillus niger: the role of unexpected bioconversion pathways
Cited by: 17
Author(s): Abeer Hossain, Alexander Ter Beek, Peter J. Punt
Software Mentions: 1
Published: over 7 years ago

10.1186/s40694-019-0077-6

Draft genome sequence of fastidious pathogen Ceratobasidium theobromae, which causes vascular-streak dieback in Theobroma cacao
Cited by: 7
Author(s): Shahzad Ali, Asman Asman, Jonathan Shao, Amanda Patappari Firmansyah, Agung Wahyu Susilo, Ade Rosmana, Peter McMahon, Muhammad Junaid, David Guest, Tee Yei Kheng, Lyndel W. Meinhardt, Bryan A. Bailey
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.fgb.2008.10.012

Genome-wide analysis of Candida albicans gene expression patterns during infection of the mammalian kidney
Cited by: 84
Author(s): Larry P. Walker, Donna M. MacCallum, Gwyneth Bertram, Neil A. R. Gow, Frank C. Odds, Alistair J. P. Brown
Software Mentions: 1
Published: over 17 years ago

10.1534/g3.113.006569

Microarray Comparison of Anterior and PosteriorDrosophilaWing Imaginal Disc Cells Identifies Novel Wing Genes
Cited by: 16
Author(s): Daniel M. Ibrahim, Brian Biehs, Thomas B. Kornberg, Ansgar Klebes
Software Mentions: 1
Published: about 13 years ago

10.1534/g3.114.012542

Transcriptome and Complexity-Reduced, DNA-Based Identification of Intraspecies Single-Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L.
Cited by: 22
Author(s): Qian Zhu, Andrew Spriggs, Jennifer Taylor, Danny Llewellyn, Iain W. Wilson
Software Mentions: 1
Published: almost 12 years ago

10.1534/g3.115.017541

Diversity of Maize Shoot Apical Meristem Architecture and Its Relationship to Plant Morphology
Cited by: 18
Author(s): Addie Thompson, Jianming Yu, Marja C.P. Timmermans, Patrick S. Schnable, James E. Crants, Michael J. Scanlon, Gary J. Muehlbauer
Software Mentions: 1
Published: over 11 years ago

10.1534/g3.114.011940

Genetic Control of Maize Shoot Apical Meristem Architecture
Cited by: 14
Author(s): Addie Thompson, James E. Crants, Patrick S. Schnable, Jianming Yu, Marja C.P. Timmermans, Nathan M. Springer, Michael J. Scanlon, Gary J. Muehlbauer
Software Mentions: 1
Published: about 12 years ago

10.1534/g3.115.019570

Second-Generation Linkage Maps for the Pacific OysterCrassostrea gigasReveal Errors in Assembly of Genome Scaffolds
Cited by: 58
Author(s): Dennis Hedgecock, Grace Ji-eun Shin, Andrew Y. Gracey, David Van Den Berg, Manoj P. Samanta
Software Mentions: 1
Published: almost 11 years ago

10.1534/g3.115.021279

Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing
Cited by: 27
Author(s): Richard S. Fletcher, David Thomas Herrmann, Jack L. Mullen, Qinfei Li, Daniel R. Schrider, Nicholas C. Price, Junjiang Lin, Kelsi Grogan, Andrew D. Kern, John McKay
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.024547

Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast
Cited by: 5
Author(s): Agnès Thierry, Varun Khanna, Bernard Dujon
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.116.028837

Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice
Cited by: 19
Author(s): Fredrick Mwamburi Mjomba, Yanyan Zheng, Huaqing Liu, Weiqi Tang, Zonglie Hong, Zhen Wang, Weiren Wu
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.116.033514

Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes
Cited by: 25
Author(s): Gregory P. Way, James Rudd, Chen Wang, Habib Hamidi, Brooke L. Fridley, Gottfried E. Konecny, Ellen L. Goode, Casey S. Greene, Jennifer A. Doherty
Software Mentions: 1
Published: almost 10 years ago

10.1534/g3.117.1124

A Large Deletion in the NSDHL Gene in Labrador Retrievers with a Congenital Cornification Disorder
Cited by: 13
Author(s): Anina Bauer, Michela De Lucia, Vidhya Jagannathan, Giorgia Mezzalira, Margaret L. Casal, Monika Maria Welle, Tosso Leeb
Software Mentions: 1
Published: about 9 years ago

10.1534/g3.118.300572

Genetic Diversity, Molecular Phylogeny, and Selection Evidence of Jinchuan Yak Revealed by Whole-Genome Resequencing
Cited by: 22
Author(s): Daoliang Lan, Xianrong Xiong, TserangDonko Mipam, FU Chang-xiu, Qiang Li, Yi Ai, Dingchao Hou, Zhixin Chai, Jincheng Zhong, Jian Li
Software Mentions: 1
Published: over 8 years ago

10.1534/g3.119.400618

Stress Resistance Screen in a Human Primary Cell Line Identifies Small Molecules That Affect Aging Pathways and Extend Caenorhabditis elegans’ Lifespan
Cited by: 8
Author(s): Peichuan Zhang, Yuying Zhai, James M. Cregg, Kenny Kean‐Hooi Ang, Michelle R. Arkin, Cynthia Kenyon
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400747

Genome Assembly and Analysis of the North American Mountain Goat (Oreamnos americanus) Reveals Species-Level Responses to Extreme Environments
Cited by: 10
Author(s): Daria Martchenko, Rayan Chikhi, Aaron B. A. Shafer
Software Mentions: 1
Published: over 6 years ago

10.3205/zma001210

Language Matters: Development of an Objective Structured Language Test for Foreign Physicians - Results of a Pilot Study in Germany.
Cited by: 0
Author(s): Holger Lenz, Ansgar Opitz, Dana Huber, Fabian Jacobs, Wolfgang Gang Paik, Jörg Roche, Martin R. Fischer
Software Mentions: 1
Published: over 7 years ago

10.3390/genes2040869

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Cited by: 24
Author(s): Arshan Nasir, Ayesha Naeem, Muhammad Jadoon Khan, Horacio D. Lopez Nicora, Gustavo Caetano‐Anollés
Software Mentions: 1
Published: almost 15 years ago

10.3390/genes6041201

Identification of Differentially Expressed IGFBP5-Related Genes in Breast Cancer Tumor Tissues Using cDNA Microarray Experiments
Cited by: 21
Author(s): Mustafa Akkiprik, İrem Peker, Tolga Özmen, Gökçe Gūllū Amuran, Bahadır M. Güllüoğlu, Hakan Kaya, Ayşe Özer
Software Mentions: 1
Published: almost 11 years ago

10.3390/genes6041330

Transcriptomic Analysis of the Porcine Endometrium during Embryo Implantation
Cited by: 28
Author(s): Haichao Lin, Huaizhong Wang, Yanping Wang, Chang Liu, Cheng Wang, Jianfeng Guo
Software Mentions: 1
Published: over 10 years ago

10.3390/genes8120381

An Expanded Multi-Organ Disease Phenotype Associated with Mutations in YARS
Cited by: 17
Author(s): Anna M Tracewska, Lonneke Haer‐Wigman, Daniëlle G.M. Bosch, Deborah A. Nickerson, Michael J. Bamshad, Maartje van de Vorst, Nanna Dahl Rendtorff, Claes Möller, Ulrika Kjellström, Sten Andréasson, Frans P.M. Cremers, Lisbeth Tranebjærg
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes9010007

ConGEMs: Condensed Gene Co-Expression Module Discovery Through Rule-Based Clustering and Its Application to Carcinogenesis
Cited by: 13
Author(s): Saurav Mallik, Zhongming Zhao
Software Mentions: 1
Published: over 8 years ago

10.3390/genes9010049

Applications of Probe Capture Enrichment Next Generation Sequencing for Whole Mitochondrial Genome and 426 Nuclear SNPs for Forensically Challenging Samples
Cited by: 35
Author(s): Shelly Shih, Nikhil Bose, Anna Beatriz R Gonçalves, Henry A. Erlich, Cassandra Calloway
Software Mentions: 1
Published: over 8 years ago

10.3390/genes9020090

Correction: Shelly Y. Shih; et al.; Applications of Probe Capture Enrichment Next Generation Sequencing for Whole Mitochondrial Genome and 426 Nuclear SNPs for Forensically Challenging Samples. Genes 2018, 9, 49
Cited by: 4
Author(s): Shelly Shih, Nikhil Bose, Anna Beatriz R Gonçalves, Henry A. Erlich, Cassandra Calloway
Software Mentions: 1
Published: over 8 years ago

10.3390/genes9080412

Protein Import into the Endosymbiotic Organelles of Apicomplexan Parasites
Cited by: 19
Author(s): Natalia Mallo, Justin D. Fellows, Carla J. Johnson, Lilach Sheiner
Software Mentions: 1
Published: about 8 years ago

10.3390/genes10050327

Genome-Wide Investigation and Functional Analysis of Sus scrofa RNA Editing Sites across Eleven Tissues
Cited by: 13
Author(s): Zishuai Wang, Xikang Feng, Zhonglin Tang, Shuai Cheng Li
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11020176

The WUSCHELa (PtoWUSa) is Involved in Developmental Plasticity of Adventitious Root in Poplar
Cited by: 8
Author(s): Jianbo Li, Huixia Jia, Peng Sun, Jin Zhang, Yongxiu Xia, Jianjun Hu, Limin Wang, Mengzhu Lu
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020166

A Fast and Scalable Workflow for SNPs Detection in Genome Sequences Using Hadoop Map-Reduce
Cited by: 7
Author(s): Muhammad Tahir, Muhammad Sardaraz
Software Mentions: 1
Published: over 6 years ago

Projects: cran: SAM

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning SAM 4,566