cran: SAM | Projects | Ecosyste.ms: Papers

10.3390/ijms17060883

Transcriptional Profiling and miRNA-Target Network Analysis Identify Potential Biomarkers for Efficacy Evaluation of Fuzheng-Huayu Formula-Treated Hepatitis B Caused Liver Cirrhosis
Cited by: 16
Author(s): Qilong Chen, Feizhen Wu, Mei Wang, Shu Dong, Yamin Liu, Yi‐Yu Lu, Yanan Song, Qian-Mei Zhou, Ping Liu, Yunquan Luo, Shi‐Bing Su
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms17101602

Fine Mapping of Virescent Leaf Gene v-1 in Cucumber (Cucumis sativus L.)
Cited by: 27
Author(s): Moonsik Han, Shengping Zhang, Min Wang, Ye Wang, Yiqun Weng, Xingfang Gu
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms17122091

Transcriptome of Cultured Lung Fibroblasts in Idiopathic Pulmonary Fibrosis: Meta-Analysis of Publically Available Microarray Datasets Reveals Repression of Inflammation and Immunity Pathways
Cited by: 22
Author(s): Laurent Plantier, Hélène Renaud, Renaud Respaud, S. Marchand-Adam, Bruno Crestani
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms18071572

Identification and Validation of New Alleles of FALSIFLORA and COMPOUND INFLORESCENCE Genes Controlling the Number of Branches in Tomato Inflorescence
Cited by: 8
Author(s): Huan Zheng, Saneyuki Kawabata
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms19030853

Impairment of Meristem Proliferation in Plants Lacking the Mitochondrial Protease AtFTSH4
Cited by: 10
Author(s): Alicja Dołzbłasz, Edyta M. Gola, Katarzyna Sokołowska, Elwira Smakowska-Luzan, Adriana Twardawska, Hanna Janska
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19092705

Characterization of the XTH Gene Family: New Insight to the Roles in Soybean Flooding Tolerance
Cited by: 41
Author(s): Li Song, Babu Valliyodan, Silvas J. Prince, Jinrong Wan, Henry T. Nguyen
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms19124019

Transcriptome Sequence Analysis Elaborates a Complex Defensive Mechanism of Grapevine (Vitis vinifera L.) in Response to Salt Stress
Cited by: 45
Author(s): Le Guan, Muhammad Salman Haider, Nadeem Khan, Maazullah Nasim, Songtao Jiu, Muhammad Fiaz, Xudong Zhu, Kekun Zhang, Jinggui Fang
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms20081953

ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing
Cited by: 11
Author(s): Na Lü, Junji Li, Changwei Bi, Jing Guo, Yuhan Tao, Kaihao Luan, Jing Tu, Lu Zhang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20092193

Characterization and Rapid Gene-Mapping of Leaf Lesion Mimic Phenotype of spl-1 Mutant in Soybean (Glycine max (L.) Merr.)
Cited by: 21
Author(s): Amin Golpour, Keke Kong, Ripa Akter Sharmin, Jiejie Kong, Javaid Akhter Bhat, Tuanjie Zhao
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20164067

Integrated Analysis of miRNA and mRNA Endorses a Twenty miRNAs Signature for Colorectal Carcinoma
Cited by: 32
Author(s): Andrea Angius, Paolo Uva, Giovanna Pira, Maria Rosaria Muroni, Giovanni Sotgiu, Laura Saderi, Elena Uleri, Maurizio Caocci, Gabriele Ibba, Maria Rosaria Cesaraccio, Caterina Serra, Ciriaco Carru, Alessandra Manca, Francesca Sanges, Alberto Porcu, A Dolei, Antonio Mario Scanu, Paolo Rocca, Maria Rosaria De Miglio
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174295

The Role of Extracellular Matrix Expression, ERK1/2 Signaling and Cell Cohesiveness for Cartilage Yield from iPSCs
Cited by: 12
Author(s): Justyna Buchert, Solvig Diederichs, Ursula Kreuser, Christian Merle, Wiltrud Richter
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20215278

Gender Related Changes in Gene Expression Induced by Valproic Acid in A Mouse Model of Autism and the Correction by S-adenosyl Methionine. Does It Explain the Gender Differences in Autistic Like Behavior?
Cited by: 17
Author(s): Liza Weinstein-Fudim, Zivanit Ergaz, Gadi Turgeman, Joseph Yanai, Moshe Szyf, Asher Ornoy
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246350

Single-Molecule Long-Read Sequencing Reveals the Diversity of Full-Length Transcripts in Leaves of Gnetum (Gnetales)
Cited by: 8
Author(s): Nan Deng, Chen Hou, Fengfeng Ma, Caixia Liu, Yuxin Tian
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010290

Molecular Mapping and Candidate Gene Analysis for GA3 Responsive Short Internode in Watermelon (Citrullus lanatus)
Cited by: 20
Author(s): Haileslassie Gebremeskel, Junling Dou, Bingbing Li, Shengjie Zhao, Umer Muhammad, Xingrong Lu, Nan He, Wenge Liu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21061999

Identification of Candidate Genes Involved in Curd Riceyness in Cauliflower
Cited by: 4
Author(s): Zhenqing Zhao, Xin Sheng, Huifang Yu, Jiansheng Wang, Yusen Shen, Honghui Gu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21072373

The Position and Complex Genomic Architecture of Plant T-DNA Insertions Revealed by 4SEE
Cited by: 6
Author(s): Ronen Krispil, Miriam Tannenbaum, Avital Sarusi-Portuguez, Olga Loza, Olga Raskina, Ofir Hakim
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21103661

Synthetic Strategies and Computational Inhibition Activity Study for Triazinyl-Substituted Benzenesulfonamide Conjugates with Polar and Hydrophobic Amino Acids as Inhibitors of Carbonic Anhydrases
Cited by: 8
Author(s): Mária Bodnár Mikulová, Dáša Kružlicová, Daniel Pecher, Claudiu T. Supuran, Peter Mikuš
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21145032

Nutri-Epigenetics and Gut Microbiota: How Birth Care, Bonding and Breastfeeding Can Influence and Be Influenced?
Cited by: 15
Author(s): Rosita Gabbianelli, Laura Bordoni, Sandra Morano, Jean Calleja‐Agius, Joan Lalor
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21197314

Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial–Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis
Cited by: 11
Author(s): Hidekazu Iwakawa, Hiro Takahashi, Yasunori Machida, Chiyoko Machida
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21197090

Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans
Cited by: 30
Author(s): Rajneesh Srivastava, Swapna Vidhur Daulatabad, Mansi Srivastava, Sarath Chandra Janga
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22010152

Transcriptome Changes in Pseudomonas putida KT2440 during Medium-Chain-Length Polyhydroxyalkanoate Synthesis Induced by Nitrogen Limitation
Cited by: 3
Author(s): Dorota M. Dabrowska, Justyna Możejko-Ciesielska, Tomasz Pokój, Sławomir Ciesielski
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22042118

A Role for Mycobacterium tuberculosis Sigma Factor C in Copper Nutritional Immunity
Cited by: 8
Author(s): Benjamin Tobias Grosse-Siestrup, Tuhina Gupta, Shelly Helms, Samantha L. Tucker, Martin I. Voskuil, Frederick D. Quinn, Russell K. Karls
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22073538

BrLETM2 Protein Modulates Anthocyanin Accumulation by Promoting ROS Production in Turnip (Brassica rapa subsp. rapa)
Cited by: 1
Author(s): Hyon Dok Song, Jianfei Yang, Nam Hyok Mun, Bo-Wei Chen, Yunzhu Chen, Pyol Kim, Saneyuki Kawabata, Yuhua Li, Yu Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22084219

TILLING-by-Sequencing+ to Decipher Oil Biosynthesis Pathway in Soybeans: A New and Effective Platform for High-Throughput Gene Functional Analysis
Cited by: 10
Author(s): Naoufal Lakhssassi, Zhou Zhou, Mallory A Cullen, Oussama Badad, Abdelhalim El Baze, Oumaima Chetto, Mohamed G. Embaby, Dounya Knizia, Shiming Liu, Leandro G. Neves, Khalid Meksem
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115747

Fine-Tuning Phylogenetic Alignment and Haplogrouping of mtDNA Sequences
Cited by: 23
Author(s): Arne Dür, Nicole Huber, Walther Parson
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22137185

Mechanism of the Conformational Change of the Protein Methyltransferase SMYD3: A Molecular Dynamics Simulation Study
Cited by: 4
Author(s): Jixue Sun, Zibin Li, Na Yang
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22147416

The Updating of Biological Functions of Methyltransferase SETDB1 and Its Relevance in Lung Cancer and Mesothelioma
Cited by: 4
Author(s): Yuan Li, Boshu Sun, Liangliang Xu, Limin Chen, Wen‐Bin Ou
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms221910600

Imatinib Regulates miR-483-3p and Mitochondrial Respiratory Complexes in Gastrointestinal Stromal Tumors
Cited by: 6
Author(s): Wen‐Shih Huang, Hao Shi, Pınar Akçakaya, Katarina Zeljić, Anastasia Gangaev, Stefano Caramuta, Chun‐Nan Yeh, Robert Bränström, Catharina Larsson, Weng‐Onn Lui
Software Mentions: 1
Published: almost 5 years ago

10.2196/jmir.4384

Swab2know: An HIV-Testing Strategy Using Oral Fluid Samples and Online Communication of Test Results for Men Who Have Sex With Men in Belgium
Cited by: 35
Author(s): Tom Platteau, Katrien Fransen, Ludwig Apers, Chris Kenyon, Laura Albers, Tine Vermoesen, Jasna Loos, Éric Florence
Software Mentions: 1
Published: about 11 years ago

10.2196/10035

Mobile App Use by Primary Care Patients to Manage Their Depressive Symptoms: Qualitative Study
Cited by: 30
Author(s): Alison Pung, Susan Fletcher, Jane Gunn
Software Mentions: 1
Published: almost 8 years ago

10.2196/17967

The Assessment of Supportive Accountability in Adults Seeking Obesity Treatment: Psychometric Validation Study
Cited by: 7
Author(s): Karishma Chhabria, Kathryn M. Ross, Shane J. Sacco, Tricia M. Leahey
Software Mentions: 1
Published: about 6 years ago

10.2196/jmir.4818

Empowerment of Cancer Survivors Through Information Technology: An Integrative Review
Cited by: 90
Author(s): Wim G Groen, Wilma Kuijpers, Hester S. A. Oldenburg, Michel W. J. M. Wouters, Neil K. Aaronson, Willem H. van Harten
Software Mentions: 1
Published: almost 11 years ago

10.1155/2013/854643

Evaluative Conditioning with Facial Stimuli in Dementia Patients
Cited by: 1
Author(s): Andreas Blessing, Jacqueline Zöllig, Roland Weierstall, Gerhard Dammann, Mike Martin
Software Mentions: 1
Published: about 13 years ago

10.1186/s12984-020-00711-4

Technology for monitoring everyday prosthesis use: a systematic review
Cited by: 46
Author(s): Alix Chadwell, Laura Diment, M. Encarna Micó-Amigo, Dafne Zuleima Morgado Ramírez, Alexander Dickinson, Malcolm Granat, Laurence Kenney, Sisary Kheng, Mohammad Sobuh, Robert T. Ssekitoleko, Peter Worsley
Software Mentions: 1
Published: about 6 years ago

10.1186/1742-2094-8-113

Nogo receptor is involved in the adhesion of dendritic cells to myelin
Cited by: 22
Author(s): Claire McDonald, Karin Steinbach, Florian Kern, Rüdiger Schweigreiter, Roland Martin, Christine E. Bandtlow, Markus Reindl
Software Mentions: 1
Published: about 15 years ago

10.1152/jn.00956.2015

Temporal accuracy of human cortico-cortical interactions
Cited by: 11
Author(s): Idan Tal, Moshe Abeles
Software Mentions: 1
Published: over 10 years ago

10.1152/jn.01048.2015

Influence of envelope waveform on ITD sensitivity of neurons in the auditory midbrain
Cited by: 14
Author(s): David Greenberg, Jessica J. M. Monaghan, Mathias Dietz, Torsten Marquardt, David McAlpine
Software Mentions: 1
Published: almost 9 years ago

10.1155/2011/260214

Hepatic Gene Expression Profiles Are Altered by Dietary Unsalted Korean Fermented Soybean (Chongkukjang) Consumption in Mice with Diet-Induced Obesity
Cited by: 14
Author(s): Ju-Ryoun Soh, Dae Young Kwon, Youn‐Soo Cha
Software Mentions: 1
Published: over 15 years ago

10.1155/2013/492170

Methylation and Expression of Immune and Inflammatory Genes in the Offspring of Bariatric Bypass Surgery Patients
Cited by: 53
Author(s): Frédéric Guénard, André Tchernof, Yves Deshaies, Katherine Cianflone, John G. Kral, Picard Marceau, Marie‐Claude Vohl
Software Mentions: 1
Published: over 13 years ago

10.1155/2015/584854

Identification of Iron Homeostasis Genes Dysregulation Potentially Involved in Retinopathy of Prematurity Pathogenicity by Microarray Analysis
Cited by: 3
Author(s): Xiaodong Luo, Chun-yi Zhang, Jiawen Zhang, Jianlin Jiang, Aihua Yin, Li Guo, Chuan Nie, Xuzai Lu, Hua Deng, Liang Zhang
Software Mentions: 1
Published: over 11 years ago

10.1155/2014/183924

Inhibition of Return in Fear of Spiders: Discrepant Eye Movement and Reaction Time Data
Cited by: 7
Author(s): Elisa Berdica, Antje B. M. Gerdes, Andre Pittig, Georg W. Alpers
Software Mentions: 1
Published: over 12 years ago

10.1016/j.isci.2020.100968

The SUMOylated METTL8 Induces R-loop and Tumorigenesis via m3C
Cited by: 31
Author(s): Lihong Zhang, Xueyun Zhang, Tao Hu, Xinyun Chen, Jing-Jia Li, Manfred Raida, Ningning Sun, Yan Luo, Xiang Gao
Software Mentions: 1
Published: over 6 years ago

10.1186/1757-2215-6-75

Analysis of the levels of lysine-specific demethylase 1 (LSD1) mRNA in human ovarian tumors and the effects of chemical LSD1 inhibitors in ovarian cancer cell lines
Cited by: 42
Author(s): Sergiy Konovalov, Ivan García-Bassets
Software Mentions: 1
Published: over 13 years ago

10.18632/oncotarget.7294

Systematic drug perturbations on cancer cells reveal diverse exit paths from proliferative state
Cited by: 14
Author(s): Joseph Zhou, Zerrin Işık, Caide Xiao, Irit Rubin, Stuart Kauffman, Michael Schroeder, Sui Huang
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.7120

Modular transcriptional repertoire and MicroRNA target analyses characterize genomic dysregulation in the thymus of Down syndrome infants
Cited by: 19
Author(s): Carlos Alberto Moreira-Filho, Sílvia Yumi Bando, Fernanda Bernardi Bertonha, Filipi Nascimento Silva, Luciano da Fontoura Costa, Leandro Ferreira, Gláucio Furlanetto, Paulo Chacur, Maria Cláudia Nogueira Zerbini, Magda Carneiro‐Sampaio
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.7343

Retrospective study testing next generation sequencing of selected cancer-associated genes in resected prostate cancer
Cited by: 23
Author(s): Marco Lo Iacono, Consuelo Buttigliero, Valentina Monica, Enrico Bollito, D. Garrou, Susanna Cappia, Ida Rapa, Francesca Vignani, Valentina Bertaglia, Cristian Fiori, Mauro Papotti, Marco Volante, Giorgio Vittorio Scagliotti, Francesco Porpiglia, Marco Tucci
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8006

Genomic markers of panitumumab resistance including ERBB2/HER2 in a phase II study of KRAS wild-type (wt) metastatic colorectal cancer (mCRC)
Cited by: 11
Author(s): Garrett Barry, Maggie C.U. Cheang, Hector Li Chang, Hagen F. Kennecke
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8325

Xenopatients show the need for precision medicine approach to chemotherapy in ovarian cancer
Cited by: 14
Author(s): Jessica Erriquez, Martina Olivero, Gloria Mittica, Maria Stella Scalzo, Marco Vaira, Michele De Simone, Riccardo Ponzone, Dionyssios Katsaros, Massimo Aglietta, Raffaele Calogero, Maria Flavia Di Renzo, Giorgio Valabrega
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8571

Protein profiling of alpha-fetoprotein producing gastric adenocarcinoma
Cited by: 15
Author(s): Liang He, Fei Ye, Qu Liu, Daguang Wang, Miao Cui, Chengguo Wei, Yanpeng Xing, Peng Lee, Jian Suo, David Y. Zhang
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8995

Systemic release of osteoprotegerin during oxaliplatin-containing induction chemotherapy and favorable systemic outcome of sequential radiotherapy in rectal cancer
Cited by: 12
Author(s): Sebastian Meltzer, Erta Kalanxhi, Helga Helseth Hektoen, Svein Dueland, Kjersti Flatmark, Kathrine Røe Redalen, Anne Hansen Ree
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.10609

Chemoprevention of oxidative stress-associated oral carcinogenesis by sulforaphane depends on NRF2 and the isothiocyanate moiety
Cited by: 40
Author(s): Aixian Lan, W. Li, Yao Liu, Zhaohui Xiong, Xinyan Zhang, Shanshan Zhou, Olesya Palko, Hao Chen, Mayanga C. Kapita, Justin R. Prigge, Edward E. Schmidt, Xin Chen, Zheng Sun, Xiaoxin Luke Chen
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.10891

Construction and analysis of dysregulated lncRNA-associated ceRNA network identified novel lncRNA biomarkers for early diagnosis of human pancreatic cancer
Cited by: 117
Author(s): Meng Zhou, Zhiyong Diao, Yue X, Chen Yang, Hengqiang Zhao, Cheng Liang, Jie Sun
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.11452

Low-dose Actinomycin-D treatment re-establishes the tumoursuppressive function of P53 in RELA-positive ependymoma
Cited by: 26
Author(s): Theophilos Tzaridis, Till Milde, Kristian W. Pajtler, Sebastian Bender, David Jones, Simone Müller, Andrea Wittmann, Magdalena Schlotter, Andreas E. Kulozik, Peter Lichter, V. Peter Collins, Olaf Witt, Marcel Kool, Andrey Korshunov, Stefan M. Pfister, Hendrik Witt
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.10125

MicroRNA-26b attenuates monocrotaline-induced pulmonary vascular remodeling via targeting connective tissue growth factor (CTGF) and cyclin D1 (CCND1)
Cited by: 19
Author(s): Ran Wang, Xing Ding, Sijing Zhou, Min Li, Sun Lee, Xuan Xu, Guanghe Fei
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.12140

Genomic characterization of liver metastases from colorectal cancer patients
Cited by: 64
Author(s): José María Sayagués, Luis A. Corchete, María Laura Gutiérrez, María Eugenia Sarasquete, María del Mar Abad, Óscar Bengoechea, Encarnación Fermiñán, María Fernanda Anduaga, Sofía Del Carmen, Manuel Iglesias, Carmen Esteban, María Angoso, José A. Sánchez Alcázar, José María Sánchez García, Alberto Órfão, Luís Muñoz-Bellvis
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.11999

Identification of long non-coding RNAs biomarkers for early diagnosis of myocardial infarction from the dysregulated coding-non-coding co-expression network
Cited by: 21
Author(s): Chaoyu Sun, Hao Jiang, Zhiguo Sun, Yifang Gui, Hongyuan Xia
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.12605

Identification of a five B cell-associated gene prognostic and predictive signature for advanced glioma patients harboring immunosuppressive subtype preference
Cited by: 12
Author(s): Chuanbao Zhang, Jiye Li, Haoyuan Wang, Shalei Song
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.12462

A three ion channel genes-based signature predicts prognosis of primary glioblastoma patients and reveals a chemotherapy sensitive subtype
Cited by: 19
Author(s): Hao‐Yuan Wang, Jiye Li, Xiu Liu, Xiaoyan Yan, Wen Wang, Fan Wu, Tingyu Liang, Fan Yang, Huimin Hu, Hengxu Mao, Yanwei Liu, Shizhong Zhang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.12362

Deregulation of the pRb-E2F4 axis alters epidermal homeostasis and favors tumor development
Cited by: 2
Author(s): Clotilde Costa, Mirentxu Santos, Mónica Martínez‐Fernández, Corina Lorz, Sara Lázaro, Jesús M. Paramio
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.13511

PSMC2 is up-regulated in osteosarcoma and regulates osteosarcoma cell proliferation, apoptosis and migration
Cited by: 29
Author(s): Mingzhi Song, Yong Wang, Zhen Zhang, Shouyu Wang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.13886

Detection of ALK rearrangements in lung cancer patients using a homebrew PCR assay
Cited by: 2
Author(s): Hui Yu, Jian Chang, Fang Liu, Qifeng Wang, Yegang Lu, Zhuan Xu Zhang, Jiabing Shen, Qian Zhai, Meng Xia, Jialei Wang, Xun Ye
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.14201

Aneuploidy related transcriptional changes in endometrial cancer link low expression of chromosome 15q genes to poor survival
Cited by: 3
Author(s): Karen Klepsland Mauland, Elisabeth Wik, Erling A. Høivik, Kanthida Kusonmano, Mari K. Halle, Ansgar Berg, Hans Kristian Haugland, Anne Margrete Øyan, Karl‐Henning Kalland, Ingunn M. Stefansson, Lars A. Akslen, Camilla Krakstad, Jone Trovik, Henrica M.J. Werner, Helga B. Salvesen
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.14509

Clonal evolution in therapy-related neoplasms
Cited by: 21
Author(s): Emiliano Fabiani, Giulia Falconi, Luana Fianchi, Marianna Criscuolo, Tiziana Ottone, Laura Cicconi, Stefan Hohaus, Simona Sica, Massimiliano Postorino, Antonino Neri, Marta Lionetti, Giuseppe Leone, Francesco Lo‐Coco, Maria Teresa Voso
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.11963

Quercetin ameliorates Aβ toxicity inDrosophilaAD model by modulating cell cycle-related protein expression
Cited by: 42
Author(s): Yan Kong, Ké Li, Tingting Fu, Chao Wan, Dongdong Zhang, Hang Song, Yao Zhang, Na Liu, Zhenji Gan, Yuan Liu
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.9793

Relapsed diffuse large B-cell lymphoma present different genomic profiles between early and late relapses
Cited by: 19
Author(s): Julien Broséus, Gaili Chen, Sébastien Hergalant, Gérard Ramstein, Nicolas Mounier, Jean‐Louis Guéant, Pierre Feugier, Christian Gisselbrecht, Catherine Thiéblemont, Rémi Houlgatte
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.15253

CBX3 promotes colon cancer cell proliferation by CDK6 kinase-independent function during cell cycle
Cited by: 41
Author(s): Yu Fan, Haiping Li, Xiaolong Liang, Zheng Xiang
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.16556

Metformin inhibits proliferation and growth hormone secretion of GH3 pituitary adenoma cells
Cited by: 26
Author(s): Jiayin An, Xiangdong Pei, Zhenle Zang, Zheng Zhou, Jintao Hu, Xin Zheng, Yin Zhang, Jialing He, Lian Duan, Rufei Shen, Weihua Zhang, Feng Zhu, Song Li, Hui Yang
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.17989

An esophageal squamous cell carcinoma classification system that reveals potential targets for therapy
Cited by: 16
Author(s): Tengfei Xiong, Mengyao Wang, Jing Zhao, Qing Liu, Chao Yang, Wen Luo, Xiangchun Li, Huanming Yang, Karsten Kristiansen, Bhaskar Roy, Yong Zhou
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.17705

The landscape of DNA methylation-mediated regulation of long non-coding RNAs in breast cancer
Cited by: 12
Author(s): Chunlong Zhang, Xinyu Wang, Xuecang Li, Ning Zhao, Yihan Wang, Xiaole Han, Ce Ci, Jian Zhang, Meng Li, Yan Zhang
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18698

Survival of metastatic melanoma patients after dendritic cell vaccination correlates with expression of leukocyte phosphatidylethanolamine-binding protein 1/Raf kinase inhibitory protein
Cited by: 13
Author(s): Sonja I. Buschow, Matteo Ramazzotti, Inge Reinieren-Beeren, Lucie Heinzerling, Harm Westdorp, Irene Stefanini, Luca Beltrame, Stanleyson V. Hato, Eva Ellebæk, Stefanie Groß, Van Anh Nguyen, Georg Weinlich, Jiannis Ragoussis, Dilair Baban, Beatrice Schuler‐Thurner, Inge Marie Svane, Nikolaus Romani, Jonathan M. Austyn, I. Jolanda M. de Vries, Gerold Schuler, Duccio Cavalieri, Carl G. Figdor
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.18832

Analysis of long non-coding RNA expression profiles identifies novel lncRNA biomarkers in the tumorigenesis and malignant progression of gliomas
Cited by: 25
Author(s): Gang Chen, Yanyan Cao, Lina Zhang, Hongxu Ma, Chao Shen, Jiang Zhao
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.19708

Preoperative imaging markers and PDZ-binding kinase tissue expression predict low-risk disease in endometrial hyperplasias and low grade cancers
Cited by: 5
Author(s): Ansgar Berg, Ankush Gulati, Sigmund Ytre-Hauge, Kristine Eldevik Fasmer, Karen Klepsland Mauland, Erling A. Høivik, J. Husby, Ingvild L. Tangen, Jone Trovik, Mari K. Halle, Ingunn M. Stefansson, Lars A. Akslen, Kathrine Woie, Line Bjørge, Helga B. Salvesen, Øyvind Salvesen, Henrica M.J. Werner, Ingfrid S. Haldorsen, Camilla Krakstad
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.20253

Global gene expression profile of cerebral ischemia-reperfusion injury in rat MCAO model
Cited by: 37
Author(s): Chunmei Wang, Minghui Liu, Yanyou Pan, Bo Bai, Jing Chen
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.17924

Identification of potential long non-coding RNA biomarkers associated with the progression of colon cancer
Cited by: 16
Author(s): Jingwen Li, Handong Wang, Jun-Li Lv, Peng Han, Yanlong Liu, Binbin Cui
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.19351

G2/M checkpoint plays a vital role at the early stage of HCC by analysis of key pathways and genes
Cited by: 28
Author(s): Yin Li, Cuifang Chang, Chi Xu
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.20698

MicroRNA-200, associated with metastatic breast cancer, promotes traits of mammary luminal progenitor cells
Cited by: 22
Author(s): Lourdes Sánchez-Cid, Mónica Pons, Juan José Lozano, Núria Rubio, Marta Guerra-Rebollo, Aroa Soriano, Laia París-Coderch, Miguel F. Segura, Raquel Fueyo, Judit Arguimbau, Erika Zodda, Raquel Bermudo, Immaculada Alonso, Xavier Caparrós, Marta Cascante, Arash Rafii, Yibin Kang, Marian A. Martínez‐Balbás, Stephen J. Weiss, José L. Jiménez Blanco, Montserrat Muñoz, Pedro Fernández, Timothy M. Thomson
Software Mentions: 1
Published: about 9 years ago

10.3934/biophy.2017.1.1

New open conformation of SMYD3 implicates conformational selection and allostery
Cited by: 8
Author(s): Nicholas Spellmon, Xiaonan Sun, Xue Wang, Joshua Holcomb, Srinivas Chakravarthy, Weifeng Shang, Brian F.P. Edwards, Nualpun Sirinupong, Chunying Li, Zhe Yang
Software Mentions: 1
Published: over 10 years ago

10.1186/s13568-017-0396-z

Medium-chain-length polyhydroxyalkanoates synthesis by Pseudomonas putida KT2440 relA/spoT mutant: bioprocess characterization and transcriptome analysis
Cited by: 22
Author(s): Justyna Możejko-Ciesielska, Dorota M. Dabrowska, Agnieszka Szalewska-Pałasz, Sławomir Ciesielski
Software Mentions: 1
Published: over 9 years ago

10.1186/s13568-021-01179-8

Increasing glycolysis by deletion of kcs1 and arg82 improved S-adenosyl-l-methionine production in Saccharomyces cerevisiae
Cited by: 5
Author(s): Hailong Chen, Na Zhu, Yan Wang, Xinxin Gao, Yuhe Song, Jia Zheng, Peng Jia-ping, Xin Zhang
Software Mentions: 1
Published: over 5 years ago

10.1107/S205252061402126X

Structure, hydrogen bonding and thermal expansion of ammonium carbonate monohydrate
Cited by: 14
Author(s): A. Dominic Fortes, Ian G. Wood, Dario Alfè, Eduardo Hernández, Matthias J. Gutmann, Hazel A. Sparkes
Software Mentions: 1
Published: almost 12 years ago

10.1107/S2052520615006824

Structure of magnesium selenate enneahydrate, MgSeO4·9H2O, from 5 to 250 K using neutron time-of-flight Laue diffraction
Cited by: 4
Author(s): A. Dominic Fortes, Dario Alfè, Eduardo Hernández, Matthias J. Gutmann
Software Mentions: 1
Published: over 11 years ago

10.1107/S2059798320007603

Macromolecular crystallography beamlines at the Canadian Light Source: building on success
Cited by: 0
Author(s): Michel Fodje, K. Mundboth, Shaunivan Labiuk, Kathryn Janzen, James Gorin, Denis Spasyuk, Scott Colville, P. Grochulski
Software Mentions: 1
Published: about 6 years ago

10.1007/s00401-016-1597-2

Herpes simplex encephalitis is linked with selective mitochondrial damage; a post-mortem and in vitro study
Cited by: 18
Author(s): Małgorzata Wnęk, Lorenzo Ressel, Emanuele Ricci, Carmen Rodriguez-Martinez, Julio Cesar Villalvazo Guerrero, Zarini Ismail, Colin Smith, Anja Kipar, Beate Sodeik, Patrick F. Chinnery, Tom Solomon, Michael J. Griffiths
Software Mentions: 1
Published: about 10 years ago

10.1186/2051-5960-1-3

Dysfunction of the mTOR pathway is a risk factor for Alzheimer’s disease
Cited by: 55
Author(s): Sharon Yates, Amen Zafar, Paul Hubbard, Sheila Nagy, Sarah M. Durant, Roy Bicknell, Gordon Wilcock, Sharon Christie, Margaret M. Esiri, A.D. Smith, Zsuzsanna Nagy
Software Mentions: 1
Published: over 13 years ago

10.1186/s40478-014-0076-z

Reducing hippocampal extracellular matrix reverses early memory deficits in a mouse model of Alzheimer’s disease
Cited by: 59
Author(s): Marlene J. Végh, Céline M Heldring, Willem Kamphuis, Sara Hijazi, A. J. Timmerman, Ka Wan Li, Pim van Nierop, Huibert D. Mansvelder, Elly M. Hol, August B. Smit, Ronald E. van Kesteren
Software Mentions: 1
Published: about 12 years ago

10.1155/2012/839837

MicroRNA Response Elements-Mediated miRNA-miRNA Interactions in Prostate Cancer
Cited by: 26
Author(s): Mohammed Alshalalfa
Software Mentions: 1
Published: almost 14 years ago

10.18632/aging.101625

Identification of an energy metabolism-related signature associated with clinical prognosis in diffuse glioma
Cited by: 47
Author(s): Zhengui Zhou, Ruoyu Huang, Rui‐Chao Chai, Xiaohong Zhou, Zhiping Hu, Wenbiao Wang, Baoguo Chen, Lintao Deng, Yuqing Liu, Fan Wu
Software Mentions: 1
Published: almost 8 years ago

10.18632/aging.101769

IDH mutation-specific radiomic signature in lower-grade gliomas
Cited by: 39
Author(s): Xing Liu, Yiming Li, Shaowu Li, Xing Fan, Zimin Sun, Zhengyi Yang, Kai Wang, Zhang Zhong, Tao Jiang, Yong Liu, Lei Wang, Yinyan Wang
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.103441

Ovarian aging increases small extracellular vesicle CD81+ release in human follicular fluid and influences miRNA profiles
Cited by: 25
Author(s): Rosalia Battaglia, Paolo Musumeci, Marco Ragusa, Davide Barbagallo, Marina Scalia, Massimo Zimbone, Maria José Lo Faro, Placido Borzì, Paolo Scollo, Michele Purrello, Elena Maria Vento, Cinzia Di Pietro
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.100900

Altered lipid metabolism in the aging kidney identified by three layered omic analysis
Cited by: 45
Author(s): Fabian Braun, Markus M. Rinschen, Valerie Bartels, Peter Frommolt, Bianca Habermann, Jan H.J. Hoeijmakers, Björn Schumacher, Martijn E.T. Dollé, Roman‐Ulrich Müller, Thomas Benzing, Bernhard Schermer, Christine Kurschat
Software Mentions: 1
Published: over 10 years ago

10.18632/aging.101253

Identification of an 88-microRNA signature in whole blood for diagnosis of hepatocellular carcinoma and other chronic liver diseases
Cited by: 17
Author(s): Xiao Ran Long, Yaojun Zhang, Mei Yin Zhang, Keng Chen, Xi Zheng, Hui Yun Wang
Software Mentions: 1
Published: about 9 years ago

10.1111/acel.12701

FOXO protects against age-progressive axonal degeneration
Cited by: 45
Author(s): Inah Hwang, Han Oh, Evan E. Santo, Do Yeon Kim, John W. Chen, Roderick T. Bronson, Jason W. Locasale, Yoonmi Na, Jaclyn Lee, Sandra M. Reed, Miklós Tóth, Wen H. Yu, Florian L. Muller, Jihye Paik
Software Mentions: 1
Published: almost 9 years ago

10.1111/acel.12619

Transcription factors CEP-1/p53 and CEH-23 collaborate with AAK-2/AMPK to modulate longevity in Caenorhabditiselegans.
Cited by: 21
Author(s): Hung‐Hao Chang, Steve Pisano, Amaresh Chaturbedi, Jennifer Chen, Sarah Gordon, Aiswarya Baruah, Siu Sylvia Lee
Software Mentions: 1
Published: over 9 years ago

10.1111/acel.13029

Voluntary exercise normalizes the proteomic landscape in muscle and brain and improves the phenotype of progeroid mice
Cited by: 16
Author(s): Jaime M. Ross, Giuseppe Coppotelli, Rui M. Branca, Kyung Mi Kim, Janne Lehtiö, David Sinclair, Lar̀s Olson
Software Mentions: 1
Published: about 7 years ago

10.1111/acel.12376

Changes in neuronal CycD/Cdk4 activity affect aging, neurodegeneration, and oxidative stress
Cited by: 7
Author(s): Amalia Icreverzi, Aida Flor A. de la Cruz, David W. Walker, Bruce A. Edgar
Software Mentions: 1
Published: about 11 years ago

10.1007/s40520-020-01646-5

Intranasal delivery of BDNF rescues memory deficits in AD11 mice and reduces brain microgliosis
Cited by: 20
Author(s): Chiara Braschi, Simona Capsoni, Roberto Narducci, Andrea Poli, Gabriele Sansevero, Rossella Brandi, Lamberto Maffei, Antonino Cattaneo, Nicoletta Berardi
Software Mentions: 1
Published: about 6 years ago

10.1007/s40520-019-01147-0

Effects of positive personal and non-personal autobiographical stimuli on emotional regulation in older adults
Cited by: 8
Author(s): L. M. Carretero, José Miguel Latorre Postigo, Dolores Fernández, Tom J. Barry, Jorge Javier Ricarte
Software Mentions: 1
Published: over 7 years ago

10.1186/1748-7188-5-24

AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences
Cited by: 7
Author(s): Darío Guerrero, Rocío Bautista, David P. Villalobos, Francisco R. Cantón, M. Gonzalo Claros
Software Mentions: 1
Published: over 16 years ago

10.1186/s13015-015-0062-4

HIA: a genome mapper using hybrid index-based sequence alignment
Cited by: 2
Author(s): Jongpill Choi, Kiejung Park, Seongbeom Cho, Myungguen Chung
Software Mentions: 1
Published: almost 11 years ago

10.1093/ajcn/nqaa359

Postdischarge interventions for children hospitalized with severe acute malnutrition: a systematic review and meta-analysis
Cited by: 6
Author(s): Christie Noble, Jonathan P Sturgeon, Mutsa Bwakura‐Dangarembizi, Paul Kelly, Beatrice Amadi, Andrew J. Prendergast
Software Mentions: 1
Published: over 5 years ago

Projects: cran: SAM

Science Score: 85/100

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Penalties:

Papers Mentioning SAM 4,566