cran: SAM | Projects | Ecosyste.ms: Papers

10.1111/jcmm.14647

Prognostic power of a lipid metabolism gene panel for diffuse gliomas
Cited by: 55
Author(s): Fan Wu, Zheng Zhao, Rui‐Chao Chai, Yuqing Liu, Guanzhang Li, Haiyan Jiang, Tao Jiang
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.15924

Characterization and prognostic significance of alternative splicing events in lower‐grade diffuse gliomas
Cited by: 3
Author(s): Zheng Zhao, Guanzhang Li, Yuqing Liu, Ruoyu Huang, Kuanyu Wang, Haiyan Jiang, Renpeng Li, Rui‐Chao Chai, Chuanbao Zhang, Fan Wu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1758-2946-6-1

Prediction of novel drug indications using network driven biological data prioritization and integration
Cited by: 35
Author(s): Ala Qabaja, Mohammed Alshalalfa, Eisa Alanazi, Reda Alhajj
Software Mentions: 1
Published: over 12 years ago

10.1186/2043-9113-1-12

Peripheral blood gene expression profiles in COPD subjects
Cited by: 30
Author(s): Soumyaroop Bhattacharya, Shivraj Tyagi, Sorachai Srisuma, Dawn L. DeMeo, Steven D. Shapiro, Raphael Bueno, Edwin K. Silverman, John J. Reilly, Thomas J. Mariani
Software Mentions: 1
Published: over 15 years ago

10.3390/jcm7120486

The Experimental Effects of Acute Exercise on Long-Term Emotional Memory
Cited by: 16
Author(s): Breanna Wade, Paul D. Loprinzi
Software Mentions: 1
Published: almost 8 years ago

10.3390/jcm9061662

Non-Invasive Skin Cancer Diagnosis Using Hyperspectral Imaging for In-Situ Clinical Support
Cited by: 41
Author(s): Raquel Leon, Beatriz Martinez-Vega, Himar Fabelo, Samuel Ortega, V.M. Melian, Irene Mencía Castaño, G. Carretero, Pablo Almeida, Aday García, Eduardo Quevedo, J Hernández, Bernardino Clavo
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm10184261

Epidermal-Derived Hedgehog Signaling Drives Mesenchymal Proliferation during Digit Tip Regeneration
Cited by: 1
Author(s): Zeshaan N. Maan, Yuval Rinkevich, Janos A. Barrera, Kellen Chen, Dominic Henn, Deshka S. Foster, Clark A. Bonham, Jagannath Padmanabhan, Dharshan Sivaraj, Dominik Duscher, Michael S. Hu, Kelley S. Yan, Michael Januszyk, Michael T. Longaker, Irving L. Weissman, Geoffrey C. Gurtner
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm10194348

Epidemiologic, Postmortem Computed Tomography-Morphologic and Biomechanical Analysis of the Effects of Non-Invasive External Pelvic Stabilizers in Genuine Unstable Pelvic Injuries
Cited by: 1
Author(s): Christian Kleber, Mirja Haussmann, Michael Hetz, Michael Tsokos, C. Buschmann
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm10194431

Using Deep Neural Networks for Predicting Age and Sex in Healthy Adult Chest Radiographs
Cited by: 13
Author(s): Chung‐Yi Yang, Yi Pan, Yen Chou, Chia-Jung Yang, Ching-Chung Kao, Kuan-Chieh Huang, Jing-Shan Chang, Hung-Chieh Chen, Kuei-Hong Kuo
Software Mentions: 1
Published: almost 5 years ago

10.1017/cts.2018.190

2157 The socially animated machine (SAM) robot: A social skills intervention for children with autism spectrum disorder
Cited by: 2
Author(s): Jenna B. Lebersfeld, Caleb J. Brasher, Christian D. Clesi, Carl E. Stevens, Fred J. Biasini, Maria Hopkins
Software Mentions: 1
Published: over 8 years ago

10.1186/2251-6581-11-7

RETRACTED ARTICLE: Mobile phone text messaging and Telephone follow-up in type 2 diabetic patients for 3 months: a comparative study
Cited by: 35
Author(s): Mitra Zolfaghari, Seyedeh A Mousavifar, Hamid Haghani
Software Mentions: 1
Published: about 14 years ago

10.1155/2016/2327341

Expression of the Receptor for Advanced Glycation End Products in Epicardial Fat: Link with Tissue Thickness and Local Insulin Resistance in Coronary Artery Disease
Cited by: 23
Author(s): Elena Dozio, Elena Vianello, Silvia Briganti, John Lamont, Lorenza Tacchini, Gerd Schmitz
Software Mentions: 1
Published: over 10 years ago

10.1186/s40337-021-00475-9

Emotional reactivity to binge food and erotic cues in women with bulimia nervosa symptoms
Cited by: 1
Author(s): Isabel Hernández-Rivero, Jens Blechert, Laura Miccoli, Katharina Naomi Eichin, M. Carmen Fernández‐Santaella, Rafael Delgado-Rodríguez
Software Mentions: 1
Published: almost 5 years ago

10.1093/jxb/eru255

PEG-mediated osmotic stress induces premature differentiation of the root apical meristem and outgrowth of lateral roots in wheat
Cited by: 76
Author(s): Hongtao Ji, Ling Liu, Kexue Li, Xie Qingen, Zhijuan Wang, Xiuhua Zhao, Xia Li
Software Mentions: 1
Published: over 12 years ago

10.1093/jxb/eru482

Meristem size contributes to the robustness of phyllotaxis in Arabidopsis
Cited by: 40
Author(s): Benoît Landrein, Yassin Refahi, Fabrice Besnard, Nathan Hervieux, Vincent Mirabet, Arezki Boudaoud, Teva Vernoux, Olivier Hamant
Software Mentions: 1
Published: almost 12 years ago

10.1093/jxb/ery442

A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice
Cited by: 5
Author(s): Sadia Nadir, Wei Li, Qian Zhu, Sehroon Khan, Xiaoling Zhang, Hui Zhang, Zhen-Fei Wei, Meng-Ting Li, Li Zhou, Chengyun Li, Lijuan Chen, Dong‐Sun Lee
Software Mentions: 1
Published: over 7 years ago

10.1093/jxb/eraa209

Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis
Cited by: 20
Author(s): Jinmi Yoon, Lae-Hyeon Cho, Wei Yang, Richa Pasriga, Yunfei Wu, Woo‐Jong Hong, Charlotte Bureau, Soo Jin Wi, Tao Zhang, Rongchen Wang, Dabing Zhang, Kyungsook Jung, Ky Young Park, Christophe Périn, Yunde Zhao, Gynheung An
Software Mentions: 1
Published: over 6 years ago

10.1093/jxb/erab058

Resolving a QTL complex for height, heading, and grain yield on chromosome 3A in bread wheat
Cited by: 8
Author(s): Alba Farre Martinez, Clare Lister, Sue Freeman, Jun Ma, Simon Berry, Luzie U. Wingen, Simon Griffiths
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.0020011

Genome-Wide Screen for Salmonella Genes Required for Long-Term Systemic Infection of the Mouse
Cited by: 315
Author(s): Trevor D. Lawley, Kaman Chan, Lucinda J. Thompson, Charles C. Kim, Gregory Govoni, Denise M. Monack
Software Mentions: 1
Published: over 20 years ago

10.1371/journal.ppat.0030022

A Link between Virulence and Homeostatic Responses to Hypoxia during Infection by the Human Fungal Pathogen Cryptococcus neoformans
Cited by: 161
Author(s): Cheryl D. Chun, Oliver W. Liu, Hiten D. Madhani
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.0030050

Transcriptional Regulation of Chemical Diversity in Aspergillus fumigatus by LaeA
Cited by: 319
Author(s): Robyn M. Perrin, Natalie D. Fedorova, Jin Woo Bok, Robert A. Cramer, Jennifer Wortman, Heenam Stanley Kim, William C. Nierman, Nancy P. Keller
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.0030083

Gene Expression Profiles of Chlamydophila pneumoniae during the Developmental Cycle and Iron Depletion–Mediated Persistence
Cited by: 81
Author(s): André P. Mäurer, Adrian Mehlitz, Hans-Joachim Mollenkopf, Thomas F. Meyer
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.ppat.0040006

Distinct TLR- and NLR-Mediated Transcriptional Responses to an Intracellular Pathogen
Cited by: 198
Author(s): Jess H. Leber, Gregory T. Crimmins, Sridharan Raghavan, Nicole Meyer-Morse, Jeffery S. Cox, Daniel A. Portnoy
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.1000155

Importance of Mitochondria in Survival of Cryptococcus neoformans Under Low Oxygen Conditions and Tolerance to Cobalt Chloride
Cited by: 65
Author(s): Susham S. Ingavale, Yun C. Chang, Hyeseung Lee, Carol M. McClelland, Madeline L. Leong, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1000200

A Sterol-Regulatory Element Binding Protein Is Required for Cell Polarity, Hypoxia Adaptation, Azole Drug Resistance, and Virulence in Aspergillus fumigatus
Cited by: 289
Author(s): Sven D. Willger, Srisombat Puttikamonkul, Kwang-Hyung Kim, James B. Burritt, Nora Grahl, Laurel J. Metzler, Robert J. Barbuch, Martin Bard, Christopher B. Lawrence, Robert A. Cramer
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1000229

Identification of Tuberculosis Susceptibility Genes with Human Macrophage Gene Expression Profiles
Cited by: 128
Author(s): Nguyen Thuy Thuong Thuong, Sarah J. Dunstan, Tran Thi Hong Chau, Vésteinn Thórsson, Cameron P. Simmons, Nguyen Than Ha Quyen, Guy Thwaites, Nguyễn Thị Ngọc Lan, Martin L. Hibberd, Yik Ying Teo, Mark Seielstad, Alan Aderem, Jeremy Farrar, Thomas R. Hawn
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1000383

Identification of Proteins Targeted by the Thioredoxin Superfamily in Plasmodium falciparum
Cited by: 76
Author(s): Nicole Sturm, Esther Jortzik, Boniface M. Mailu, Saša Končarević, Marcel Deponte, Karl Forchhammer, Stefan Rahlfs, Katja Becker
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1000569

Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors
Cited by: 241
Author(s): Christian Flueck, Richárd Bártfai, Jennifer Volz, Igor Niederwieser, Adriana M. Salcedo‐Amaya, Blaise T. F. Alako, Florian Ehlgen, Stuart A. Ralph, Alan F. Cowman, Zbynek Bozdech, Hendrik G. Stunnenberg, Till S. Voss
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.ppat.1000737

Histone Deacetylases Play a Major Role in the Transcriptional Regulation of the Plasmodium falciparum Life Cycle
Cited by: 127
Author(s): Balbir K. Chaal, Anjali Gupta, Brigitta Wastuwidyaningtyas, Yen-Hoon Luah, Zbynek Bozdech
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1000783

Transit through the Flea Vector Induces a Pretransmission Innate Immunity Resistance Phenotype in Yersinia pestis
Cited by: 117
Author(s): Viveka Vadyvaloo, Clayton O. Jarrett, Daniel E. Sturdevant, Florent Sebbane, B. Joseph Hinnebusch
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1000848

Cryptococcus neoformans Overcomes Stress of Azole Drugs by Formation of Disomy in Specific Multiple Chromosomes
Cited by: 377
Author(s): Edward Sionov, Hyeseung Lee, Yun C. Chang, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.ppat.1001026

DNA Damage Triggers Genetic Exchange in Helicobacter pylori
Cited by: 109
Author(s): Marion S. Dorer, Jutta Fero, Nina R. Salama
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1001065

Reciprocal Analysis of Francisella novicida Infections of a Drosophila melanogaster Model Reveal Host-Pathogen Conflicts Mediated by Reactive Oxygen and imd-Regulated Innate Immune Response
Cited by: 69
Author(s): Madeleine G. Moule, Denise M. Monack, David Schneider
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1001102

A Bistable Switch and Anatomical Site Control Vibrio cholerae Virulence Gene Expression in the Intestine
Cited by: 94
Author(s): Alex Toftgaard Nielsen, Nadia Dolganov, Thomas Høj Rasmussen, G Otto, Michael C. Miller, Stephen A. Felt, Stéphanie L Torreilles, Gary K. Schoolnik
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1003210

Candida albicans White and Opaque Cells Undergo Distinct Programs of Filamentous Growth
Cited by: 77
Author(s): Haoyu Si, Aaron D. Hernday, Matthew P. Hirakawa, Alexander D. Johnson, Richard J. Bennett
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003268

Puf Mediates Translation Repression of Transmission-Blocking Vaccine Candidates in Malaria Parasites
Cited by: 67
Author(s): Jun Miao, Qi Fan, Daniel M. Parker, Xiaolian Li, Jianyong Li, Liwang Cui
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003448

Transcriptome Analyses of Inhibitor-treated Schistosome Females Provide Evidence for Cooperating Src-kinase and TGFβ Receptor Pathways Controlling Mitosis and Eggshell Formation
Cited by: 45
Author(s): Christin Buro, Kátia C. Oliveira, Zhigang Lu, Silke Leutner, Svenja Beckmann, Colette Dissous, Kátia Cailliau, Sérgio Verjovski-Almeida, Christoph G. Grevelding
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003445

An Extracellular Subtilase Switch for Immune Priming in Arabidopsis
Cited by: 99
Author(s): Vicente Ramírez, Ana López, Brigitte Mauch‐Mani, Ma José Gil, Pablo Vera
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1006577

Innate activation of human primary epithelial cells broadens the host response to Mycobacterium tuberculosis in the airways
Cited by: 42
Author(s): Ann-Kathrin Reuschl, Michael R. Edwards, Robert Parker, David Connell, Long Hoàng, Alice Halliday, Hannah Jarvis, Nazneen Siddiqui, C. A. Wright, Samuel Bremang, Sandra M. Newton, Peter C. L. Beverley, Robin J. Shattock, Onn Min Kon, Ajit Lalvani
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1006722

Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo
Cited by: 54
Author(s): Rie Furuta, Jun-ichirou Yasunaga, Michi Miura, Kenji Sugata, Akatsuki Saito, Hirofumi Akari, Takaharu Ueno, Norihiro Takenouchi, Jun Fujisawa, Ki Ryang Koh, Yusuke Higuchi, Mohamed Mahgoub, Masakazu Shimizu, Fumihiko Matsuda, Anat Melamed, Charles R. M. Bangham, Masao Matsuoka
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1007810

Cucumber mosaic virus infection as a potential selective pressure on Arabidopsis thaliana populations
Cited by: 33
Author(s): Núria Montés, Carlos Alonso‐Blanco, Fernando Garcı́a-Arenal
Software Mentions: 1
Published: over 7 years ago

10.1002/pmrj.12508

Understanding Changes in Physical Activity among Lower Limb Prosthesis Users: A COVID ‐19 Case Series
Cited by: 3
Author(s): Akshay S Tolani, Shane R. Wurdeman, Bryce Billing, Erin M. O’Brien, Dwiesha L. England, Phillip M. Stevens, Aaron Flores
Software Mentions: 1
Published: almost 6 years ago

10.3390/polym11020307

Scanning Auger Microscopy Studies of Silane Films Grown on Plasma-Modified HOPG Surfaces
Cited by: 2
Author(s): Jade K. Taylor, Jasmine R. Wiese, Sarah L. Harmer
Software Mentions: 1
Published: over 7 years ago

10.3390/polym13091521

Endochondral Ossification Induced by Cell Transplantation of Endothelial Cells and Bone Marrow Stromal Cells with Copolymer Scaffold Using a Rat Calvarial Defect Model
Cited by: 1
Author(s): Zhe Xing, Xiaofeng Jiang, Qingzong Si, Anna Finne‐Wistrand, Bin Liu, Ying Xue, Kamal Mustafa
Software Mentions: 1
Published: over 5 years ago

10.1186/1478-7954-10-18

Sentinel site community surveillance of mortality and nutritional status in southwestern Central African Republic, 2010
Cited by: 22
Author(s): Grazia Caleo, Aly Penda Sy, Serge Balandine, Jonathan Polonsky, Pedro Pablo Palma, Rebecca F. Grais, Francesco Checchi
Software Mentions: 1
Published: about 14 years ago

10.1016/j.pmedr.2021.101427

The integrated screening action model (I-SAM): A theory-based approach to inform intervention development
Cited by: 13
Author(s): Kathryn A. Robb
Software Mentions: 1
Published: about 5 years ago

10.1073/pnas.1904903116

Biosynthesis of the nitrogenase active-site cofactor precursor NifB-co in <i>Saccharomyces cerevisiae</i>
Cited by: 27
Author(s): Stefan Burén, Katelin Pratt, Xi Jiang, Yisong Guo, Emilio Jiménez-Vicente, Carlos Echavarri‐Erasun, Dennis R. Dean, Ishtiaq Saaem, D. Benjamin Gordon, Christopher A. Voigt, Luis M. Rubio
Software Mentions: 1
Published: almost 7 years ago

10.1186/1477-5956-7-2

Glycoproteomic analysis of two mouse mammary cell lines during transforming growth factor (TGF)-beta induced epithelial to mesenchymal transition
Cited by: 35
Author(s): Jonathan D. Hill, Tammy-Lynn Tremblay, Christiane Cantin, Maureen D. O’Connor-McCourt, John F. Kelly, Anne E.G. Lenferink
Software Mentions: 1
Published: over 17 years ago

10.1186/1477-5956-7-29

Large-scale analysis of protein expression changes in human keratinocytes immortalized by human papilloma virus type 16 E6 and E7 oncogenes
Cited by: 32
Author(s): Mark A. Merkley, Ellen Hildebrandt, Robert H. Podolsky, Hilal Arnouk, Daron G. Ferris, William S. Dynan, Hubert Stöppler
Software Mentions: 1
Published: about 17 years ago

10.1186/1477-5956-10-71

An antibody microarray analysis of serum cytokines in neurodegenerative Parkinsonian syndromes
Cited by: 22
Author(s): Philipp Mahlknecht, Sylvia Stemberger, Fabienne Sprenger, Johannes Michael Rainer, Eva Hametner, Rudolf Kirchmair, Christoph Grabmer, Christoph Scherfler, Gregor K. Wenning, Klaus Seppi, Werner Poewe, Markus Reindl
Software Mentions: 1
Published: almost 14 years ago

10.5334/pb.340

A French Translation of the Pleasure Arousal Dominance (PAD) Semantic Differential Scale for the Measure of Affect and Drive
Cited by: 10
Author(s): Sandrine Detandt, Christophe Leys, Ariane Bazan
Software Mentions: 1
Published: over 9 years ago

10.3758/s13423-015-0991-4

On testing the strength independence assumption in retrieval-induced forgetting
Cited by: 5
Author(s): Jeroen G. W. Raaijmakers
Software Mentions: 1
Published: over 10 years ago

10.1007/s00213-019-05314-z

Alcohol, empathy, and morality: acute effects of alcohol consumption on affective empathy and moral decision-making
Cited by: 13
Author(s): Kathryn B. Francis, Michaela Gummerum, Giorgio Ganis, Ian S. Howard, Sylvia Terbeck
Software Mentions: 1
Published: about 7 years ago

10.1017/S1368980018003282

Brain MRI and cognitive function seven years after surviving an episode of severe acute malnutrition in a cohort of Malawian children
Cited by: 19
Author(s): Natasha Lelijveld, Alhaji Alusine Jalloh, Samuel Kampondeni, Andrew Seal, Jonathan C. K. Wells, Magdalena Goyheneix, Emmanuel Chimwezi, Macpherson Mallewa, Moffat Nyirenda, Robert S. Heyderman, Marko Kerac
Software Mentions: 1
Published: almost 8 years ago

10.1098/rsos.150593

The visual gamma response to faces reflects the presence of sensory evidence and not awareness of the stimulus
Cited by: 4
Author(s): Gavin Perry
Software Mentions: 1
Published: over 10 years ago

10.1098/rsos.160824

Changeable camouflage: how well can flounder resemble the colour and spatial scale of substrates in their natural habitats?
Cited by: 21
Author(s): Derya Akkaynak, Liese A. Siemann, Alexandra Barbosa, Lydia M. Mäthger
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.170050

TSNAD: an integrated software for cancer somatic mutation and tumour-specific neoantigen detection
Cited by: 54
Author(s): Zhan Zhou, Xingzheng Lyu, Jingcheng Wu, Xiaoyue Yang, Shanshan Wu, Jié Zhou, Xun Gu, Zhixi Su, Shuqing Chen
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.170233

Taxonomic review of the late Cenozoic megapodes (Galliformes: Megapodiidae) of Australia
Cited by: 11
Author(s): Elen Shute, Gavin J. Prideaux, Trevor H. Worthy
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.201081

Identification of candidate genes controlling chilling tolerance of rice in the cold region at the booting stage by BSA-Seq and RNA-Seq
Cited by: 14
Author(s): Zhenhua Guo, Lijun Cai, Zhiqiang Chen, Ruiying Wang, Lanming Zhang, Shiwu Guan, Shuhua Zhang, Wendong Ma, Chuanxue Liu, Guoqing Pan
Software Mentions: 1
Published: almost 6 years ago

10.1186/1748-717X-6-42

Gene expression profiling of human dermal fibroblasts exposed to bleomycin sulphate does not differentiate between radiation sensitive and control patients
Cited by: 4
Author(s): Charlotte Westbury, Kristine Kleivi Sahlberg, Anne‐Lise Børresen‐Dale, Clare M. Isacke, John Yarnold
Software Mentions: 1
Published: over 15 years ago

10.1186/s13014-020-01486-7

Acoustic diagnosis of elastic properties of human tooth by 320 MHz scanning acoustic microscopy after radiotherapy treatment for head and neck cancer
Cited by: 4
Author(s): Irem Demirkan, Gökhan Yaprak, Cemile Ceylan, Emriye Algül, Ceyda Özçakır Tomruk, Bükem Bilen, Mehmet Ünlü
Software Mentions: 1
Published: over 6 years ago

10.1186/s13014-021-01872-9

Dosimetric benefits of daily treatment plan adaptation for prostate cancer stereotactic body radiotherapy
Cited by: 3
Author(s): Miriam Eckl, Gustavo R. Sarria, Sandra Springer, Marvin Willam, Arne Mathias Ruder, Volker Steil, Michael Ehmann, Frederik Wenz, Jens Fleckenstein
Software Mentions: 1
Published: about 5 years ago

10.1016/j.redox.2019.101280

Utilizing redox-sensitive GFP fusions to detect in vivo redox changes in a genetically engineered prokaryote
Cited by: 15
Author(s): Wilhad Hans Reuter, Thorsten Masuch, Na Ke, Marine Lénon, Meytal Radzinski, Vu Van Loi, Guoping Ren, Paul Riggs, Haike Antelmann, Dana Reichmann, Lars I. Leichert, Mehmet Berkmen
Software Mentions: 1
Published: about 7 years ago

10.1186/1477-7827-4-39

Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays
Cited by: 111
Author(s): Julien Bobe, Jérôme Montfort, Nguyen Tri, Alexis Fostier
Software Mentions: 1
Published: about 20 years ago

10.1186/1477-7827-7-45

Analysis of gene expression profiles in HeLa cells in response to overexpression or siRNA-mediated depletion of NASP
Cited by: 24
Author(s): Oleg Alekseev, Richard T. Richardson, Oleg Alekseev, Michael G. O’Rand
Software Mentions: 1
Published: over 17 years ago

10.1186/1477-7827-9-29

MicroRNA array and microarray evaluation of endometrial receptivity in patients with high serum progesterone levels on the day of hCG administration
Cited by: 90
Author(s): Rong Li, Jie Qiao, Lina Wang, L i Li, Xiumei Zhang, Ping Liu, Xiaoying Zheng
Software Mentions: 1
Published: over 15 years ago

10.1186/s12931-018-0795-y

A candidate gene identification strategy utilizing mouse to human big-data mining: “3R-tenet” in COPD genetic research
Cited by: 4
Author(s): Sangeetha Vishweswaraiah, Leema George, Purushothaman Natarajan, Koustav Ganguly
Software Mentions: 1
Published: over 8 years ago

10.1186/s12931-018-0857-1

Comprehensive gene expression profiling identifies distinct and overlapping transcriptional profiles in non-specific interstitial pneumonia and idiopathic pulmonary fibrosis
Cited by: 56
Author(s): Matthew J. Cecchini, Karishma Hosein, Christopher J. Howlett, Mariamma Joseph, Marco Mura
Software Mentions: 1
Published: about 8 years ago

10.1186/s12931-019-1257-x

Construction of asthma related competing endogenous RNA network revealed novel long non-coding RNAs and potential new drugs
Cited by: 16
Author(s): Yifang Liao, Ping Li, Yanxia Wang, Hong Chen, Shangwei Ning, Dongju Su
Software Mentions: 1
Published: over 6 years ago

10.1186/1742-4690-10-118

Characterization of simian T-cell leukemia virus type 1 in naturally infected Japanese macaques as a model of HTLV-1 infection
Cited by: 35
Author(s): Michi Miura, Jun-ichirou Yasunaga, Junko Tanabe, Kenji Sugata, Tiejun Zhao, Guangyong Ma, Paola Miyazato, Koichi Ohshima, Akihisa Kaneko, A. Watanabe, Akatsuki Saito, Hirofumi Akari, Masao Matsuoka
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12977-018-0454-x

Distinct gene expression signatures induced by viral transactivators of different HTLV-1 subgroups that confer a different risk of HAM/TSP
Cited by: 13
Author(s): Tadasuke Naito, Jun‐ichirou Yasunaga, Yuichi Mitobe, Kazumasa Shirai, Hiroe Sejima, Hiroshi Ushirogawa, Yuetsu Tanaka, Tatsufumi Nakamura, Kousuke Hanada, Masahiro Fujii, Masao Matsuoka, Mineki Saito
Software Mentions: 1
Published: almost 8 years ago

10.1186/1939-8433-6-19

Genome-wide identification and analysis of Japonica and Indica cultivar-preferred transcripts in rice using 983 Affymetrix array data
Cited by: 24
Author(s): Ki Hong Jung, Hyun Jung Gho, Hoi Khoanh Giong, Anil Kumar Nalini Chandran, Quynh N. Nguyen, Hee Bak Choi, Tian Zhang, Wen Wang, Jin Hyun Kim, Hong Kyu Choi, Gynheung An
Software Mentions: 1
Published: about 13 years ago

10.1186/s12284-018-0218-1

Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy
Cited by: 48
Author(s): Jian Sun, Liuqing Yang, Jingguo Wang, Hualong Liu, Hongliang Zheng, Dongwei Xie, Minghui Zhang, Mingfang Feng, Yan Jia, Hongwei Zhao, Detang Zou
Software Mentions: 1
Published: over 8 years ago

10.1016/j.xpro.2020.100046

Generation of Sequencing Libraries for Structural Analysis of Bacterial 5′ UTRs
Cited by: 0
Author(s): Dmitriy Ignatov, Karolis Vaitkevicius, Jörgen Johansson
Software Mentions: 1
Published: about 6 years ago

10.1177/2158244019837313

From Bright Bodies to iChoose: Using a CBPR Approach to Develop Childhood Obesity Intervention Materials for Rural Virginia
Cited by: 7
Author(s): Fabio A. Almeida, Jamie Zoellner, Jennie L. Hill, Wen You, Ramine Alexander, Xiaolu Hou, Paul A. Estabrooks
Software Mentions: 1
Published: over 7 years ago

10.1155/2012/639038

Global Gene Expression Profiling of Human Osteosarcomas Reveals Metastasis-Associated Chemokine Pattern
Cited by: 31
Author(s): Heidi M. Namløs, Stine H. Kresse, Christoph Müller, Jörn Henriksen, Rita Holdhus, Gunnar Sæter, Øyvind S. Bruland, Bodil Bjerkehagen, Vidar M. Steen, Ola Myklebost
Software Mentions: 1
Published: over 14 years ago

10.1155/2012/805614

Comparative Gene Expression Profiling of Benign and Malignant Lesions Reveals Candidate Therapeutic Compounds for Leiomyosarcoma
Cited by: 16
Author(s): Badreddin Edris, Jonathan A. Fletcher, Robert B. West, Matt van de Rijn, Andrew H. Beck
Software Mentions: 1
Published: over 14 years ago

10.3109/03009742.2011.623137

Gene expression analysis of rheumatoid arthritis synovial lining regions by cDNA microarray combined with laser microdissection: up-regulation of inflammation-associated STAT1, IRF1, CXCL9, CXCL10, and CCL5
Cited by: 67
Author(s): Satoshi Yoshida, Fumiko Arakawa, Fujio Higuchi, Yukinao Ishibashi, Masafumi Goto, Yasuo Sugita, Yuko Nomura, Daisuke Niino, Kay Shimizu, Ryosuke Aoki, Keiko Hashikawa, Yoshizo Kimura, Kaori Yasuda, Kosuke Tashiro, Satoru Kuhara, Kensei Nagata, Koichi Ohshima
Software Mentions: 1
Published: over 14 years ago

10.1186/s13049-016-0216-5

Non-technical skills evaluation in the critical care air ambulance environment: introduction of an adapted rating instrument - an observational study
Cited by: 27
Author(s): Julia A Myers, David Powell, Alex Psirides, Karyn Hathaway, Sarah Aldington, Michael Haney
Software Mentions: 1
Published: over 10 years ago

10.1093/schbul/sby117

Attenuated Post-Movement Beta Rebound Associated With Schizotypal Features in Healthy People
Cited by: 18
Author(s): Benjamin A. E. Hunt, Elizabeth B. Liddle, Lauren E. Gascoyne, Lorenzo Magazzini, Bethany Routley, Krish D. Singh, Peter G. Morris, Matthew J. Brookes, Peter F. Liddle
Software Mentions: 1
Published: almost 8 years ago

10.1038/sdata.2014.39

Flow-dependent regulation of genome-wide mRNA and microRNA expression in endothelial cells in vivo
Cited by: 24
Author(s): Sandeep Kumar, Chan Woo Kim, Dong Ju Son, Chih-Wen Ni, Hanjoong Jo
Software Mentions: 1
Published: almost 12 years ago

10.1038/sdata.2018.120

Emotional ratings and skin conductance response to visual, auditory and haptic stimuli
Cited by: 54
Author(s): Elia Gatti, Elena Calzolari, Emanuela Maggioni, Marianna Obrist
Software Mentions: 1
Published: about 8 years ago

10.1038/s41597-019-0339-4

Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel
Cited by: 2
Author(s): Marco L. Leung, Deborah Watson, Courtney Vaccaro, Fernanda Mafra, Adam S Wenocur, Tiancheng Wang, Håkon Håkonarson, Avni Santani
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-020-0366-1

The Chieti Affective Action Videos database, a resource for the study of emotions in psychology
Cited by: 12
Author(s): Adolfo Di Crosta, Pasquale La Malva, Claudio Manna, Anna Marín, Rocco Palumbo, Maria Cristina Verrocchio, Michela Cortini, Nicola Mammarella, Alberto Di Domenico
Software Mentions: 1
Published: over 6 years ago

10.1038/srep02191

Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans
Cited by: 103
Author(s): John R. Erb-Downward, Nicole R. Falkowski, Katie L. Mason, Ryan Muraglia, Gary B. Huffnagle
Software Mentions: 1
Published: about 13 years ago

10.1038/srep07857

Cancer systems biology of TCGA SKCM: Efficient detection of genomic drivers in melanoma
Cited by: 74
Author(s): Jian Guan, Rohit Gupta, Fabian V. Filipp
Software Mentions: 1
Published: over 11 years ago

10.1038/srep08785

Excess of Rare Variants in Genes that are Key Epigenetic Regulators of Spermatogenesis in the Patients with Non-Obstructive Azoospermia
Cited by: 36
Author(s): Zesong Li, Yi Huang, Honggang Li, Jingchu Hu, Xiao Liu, Tao Jiang, Guangqing Sun, Aifa Tang, Xiaojuan Sun, Weiping Qian, Yong Zeng, Jun Xie, Wei Zhao, Yu Xu, Tingting He, Chengliang Dong, Qunlong Liu, Lisha Mou, Jingxiao Lu, Zheguang Lin, Song Wu, Shengjie Gao, Guangwu Guo, Qiang Feng, Yingrui Li, Xiuqing Zhang, Jun Wang, Huanming Yang, Jian Wang, Chengliang Xiong, Zhiming Cai, Yaoting Gui
Software Mentions: 1
Published: over 11 years ago

10.1038/srep11895

Identification of reproducible drug-resistance-related dysregulated genes in small-scale cancer cell line experiments
Cited by: 10
Author(s): Lu Ao, Haidan Yan, Tingting Zheng, Yan Wang, Man‐Li Tong, Qingzhou Guan, Xiangyu Li, Hao Cai, Mengyao Li, Zheng Guo
Software Mentions: 1
Published: about 11 years ago

10.1038/srep11035

Identification of ULK1 as a novel biomarker involved in miR-4487 and miR-595 regulation in neuroblastoma SH-SY5Y cell autophagy
Cited by: 29
Author(s): Yi Chen, Shuya Wang, Lan Zhang, Tao Xie, Sicheng Song, Jian Huang, Yonghui Zhang, Liang Ouyang, Bo Liu
Software Mentions: 1
Published: about 11 years ago

10.1038/srep10752

Characterization of species-specific genes regulated by E2-2 in human plasmacytoid dendritic cells
Cited by: 11
Author(s): Man Cheng, Xuyuan Zhang, Haisheng Yu, Pu Du, Joël Plumas, Laurence Chaperot, Lishan Su, Liguo Zhang
Software Mentions: 1
Published: about 11 years ago

10.1038/srep13488

Quantitative analysis on electric dipole energy in Rashba band splitting
Cited by: 12
Author(s): Jisook Hong, Jun‐Won Rhim, Changyoung Kim, Seung Ryong Park, Ji Hoon Shim
Software Mentions: 1
Published: about 11 years ago

10.1038/srep14900

Trends and variability of the atmosphere–ocean turbulent heat flux in the extratropical Southern Hemisphere
Cited by: 5
Author(s): Agnieszka Herman
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep15243

A scanning acoustic microscope discriminates cancer cells in fluid
Cited by: 38
Author(s): Katsutoshi Miura, Seiji Yamamoto
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep15478

An evidence-based knowledgebase of metastasis suppressors to identify key pathways relevant to cancer metastasis
Cited by: 19
Author(s): Min Zhao, Zhe Li, Hong Qu
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16732

miR-34a screened by miRNA profiling negatively regulates Wnt/β-catenin signaling pathway in Aflatoxin B1 induced hepatotoxicity
Cited by: 62
Author(s): Liye Zhu, Jing Gao, Kunlun Huang, Yunbo Luo, Boyang Zhang, Wentao Xu
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16904

Collective effects of common SNPs in foraging decisions in Caenorhabditis elegans and an integrative method of identification of candidate genes
Cited by: 14
Author(s): Zuobin Zhu, Qing Lu, Junjing Wang, Shi Huang
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep17069

Enhancing the sensitivity of a micro-diaphragm resonating sensor by effectively positioning the mass on the membrane
Cited by: 13
Author(s): Jinsik Kim, Hye Jin Kim, Eun Ae Cho, Hyun Joon Shin, Jung Ho Park, Kyo Seon Hwang
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep17303

Compatibility between mitochondrial and nuclear genomes correlates with the quantitative trait of lifespan in Caenorhabditis elegans
Cited by: 21
Author(s): Zuobin Zhu, Qing Lu, Fangfang Zeng, Junjing Wang, Shi Huang
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep17252

Impacts of IOD, ENSO and ENSO Modoki on the Australian Winter Wheat Yields in Recent Decades
Cited by: 64
Author(s): Chaoxia Yuan, Toshio Yamagata
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep18405

Identification of a highly efficient stationary phase promoter in Bacillus subtilis
Cited by: 49
Author(s): Xiaoxia Yu, XU Jiang-tao, Xiaoqing Liu, Xiaoyu Chu, Ping Wang, Jian Tian, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: almost 11 years ago

Projects: cran: SAM

Science Score: 85/100

Bonuses:

Penalties:

Papers Mentioning SAM 4,566