10.1038/s41598-020-69351-x

A negative covariation between toxoplasmosis and CoVID-19 with alternative interpretations
Cited by: 20
Author(s): Łukasz Jankowiak, Lajos Rózsa, Piotr Tryjanowski, Anders Pape Møller
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-69152-2

Transcriptional portrait of M. bovis BCG during biofilm production shows genes differentially expressed during intercellular aggregation and substrate attachment
Cited by: 10
Author(s): Mario Alberto Flores-Valdéz, Michel de Jesús Aceves-Sánchez, Eliza J.R. Peterson, Nitin S. Baliga, Jorge Madrigal, Miguel A. De la Cruz, Miguel A. Ares, Sarah E M Born, Martin I. Voskuil, Nayeli Areli Pérez-Padilla, Mirna Burciaga-Flores, Tanya A. Camacho-Villegas, María Guadalupe Espinoza-Jorge
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-69861-8

Modelling transport of inhibiting and activating signals and their combined effects on floral induction: application to apple tree
Cited by: 1
Author(s): Farés Belhassine, Damien Fumey, Jérôme Chopard, Christophe Pradal, Sébastien Martinez, Evelyne Costes, Benoît Pallas
Software Mentions: 2
Published: about 6 years ago

10.1186/s12862-018-1127-z

Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)
Cited by: 26
Author(s): Jonna Sofia Eriksson, Filipe de Sousa, Yann Bertrand, Alexandre Antonelli, Bengt Oxelman, Bernard E. Pfeil
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0004702

Transcript-Specific Expression Profiles Derived from Sequence-Based Analysis of Standard Microarrays
Cited by: 22
Author(s): Anton G. Moll, Maja T. Lindenmeyer, Matthias Kretzler, Peter J. Nelson, Ralf Zimmer, Clemens D. Cohen
Software Mentions: 2
Published: over 17 years ago

10.1038/s41598-020-72103-6

Long-term changes in habitat and trophic level of Southern Ocean squid in relation to environmental conditions
Cited by: 8
Author(s): José Abreu, Richard A. Phillips, Filipe R. Ceia, Louise Ireland, Vítor H. Paiva, José C. Xavier
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-71997-6

Identification of miRNA signatures for kidney renal clear cell carcinoma using the tensor-decomposition method
Cited by: 13
Author(s): Ka-Lok Ng, Y-h. Taguchi
Software Mentions: 2
Published: about 6 years ago

10.1186/s12920-017-0255-4

CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data
Cited by: 15
Author(s): Zhenhua Yu, Ao Li, Minghui Wang
Software Mentions: 2
Published: over 9 years ago

10.1186/s12859-018-2579-2

NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors
Cited by: 119
Author(s): John Gaspar
Software Mentions: 2
Published: almost 8 years ago

10.1186/1755-8794-5-22

Relation between smoking history and gene expression profiles in lung adenocarcinomas
Cited by: 36
Author(s): Johan Staaf, Göran Jönsson, Mats Jönsson, Anna Karlsson, Sten Isaksson, Annette Salomonsson, Helen Pettersson, Maria Soller, Sven-Börje Ewers, Leif Johansson, Per Jönsson, Maria Planck
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0251149

A robust method of nuclei isolation for single-cell RNA sequencing of solid tissues from the plant genus Populus
Cited by: 17
Author(s): Daniel Conde, Paolo M. Triozzi, Kelly M. Balmant, Andria Doty, Mariza Abreu Miranda, Anthony Boullosa, Henry W. Schmidt, Wendell Jacinto Pereira, Christopher Dervinis, Matias Kirst
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-017-3226-4

Genome-wide methylation analysis identifies a core set of hypermethylated genes in CIMP-H colorectal cancer
Cited by: 27
Author(s): Tyler McInnes, Donghui Zou, Dasari S. Rao, Francesca Maree Munro, Vicky Phillips, John L. McCall, Michael A. Black, Anthony E. Reeve, Parry Guilford
Software Mentions: 2
Published: over 9 years ago

10.1186/s12920-015-0088-y

Gene expression network analysis reveals new transcriptional regulators as novel factors in human ischemic cardiomyopathy
Cited by: 19
Author(s): Isabel Herrer, Esther Roselló‐Lletí, Ana Ortega, Estefanía Tarazón, Maria Micaela Molina‐Navarro, Juan Carlos Triviño, Luis Martínez‐Dolz, Luís Almenar, Francisca Lago, Ignacio Sánchez‐Lázaro, José Ramón González-Juanatey, Antonio Salvador, Manuel Portolés, Miguel Rivera
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-020-76302-z

Inhabited subsurface wet smectites in the hyperarid core of the Atacama Desert as an analog for the search for life on Mars
Cited by: 21
Author(s): Armando Azua‐Bustos, Alberto González Fairén, Carlos González-Silva, Daniel Carrizo, Miguel Ángel Fernández-Martínez, Cristián Arenas-Fajardo, M. Fernández-Sampedro, Carolina Gil-Lozano, Laura Sánchez-García, Carmen Ascaso, Jacek Wierzchoś, E. B. Rampe
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0012671

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae
Cited by: 150
Author(s): Nikoleta G. Tsvetanova, Daniel M. Klass, Julia Salzman, Patrick O. Brown
Software Mentions: 2
Published: about 16 years ago

10.1038/s41598-020-77110-1

Strategies to produce T-DNA free CRISPRed fruit trees via Agrobacterium tumefaciens stable gene transfer
Cited by: 35
Author(s): Lorenza Dalla Costa, Stefano Piazza, Valerio Pompili, Umberto Salvagnin, Alessandro Cestaro, Loredana Moffa, Lorenzo Vittani, C. Moser, Mickaël Malnoy
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-77403-5

Antarctic ice mass variations from 1979 to 2017 driven by anomalous precipitation accumulation
Cited by: 6
Author(s): Byeong‐Hoon Kim, Ki‐Weon Seo, Jooyoung Eom, Jianli Chen, Clark R. Wilson
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-14-S7-S11

WEP: a high-performance analysis pipeline for whole-exome data
Cited by: 42
Author(s): Mattia D’Antonio, Paolo D’Onorio De Meo, Daniele Paoletti, B Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò
Software Mentions: 2
Published: over 13 years ago

10.1186/1755-8794-1-10

Identification of differentially expressed genes in fibroblasts derived from patients with Dupuytren's Contracture
Cited by: 56
Author(s): Latha Satish, William A. LaFramboise, David B. O’Gorman, Sharon L. Johnson, Benjamin Janto, Bing Siang Gan, Mark E. Baratz, Fang Hu, J. Christopher Post, Garth D. Ehrlich, Sandeep Kathju
Software Mentions: 2
Published: over 18 years ago

10.3390/biom10111491

Development of Methods Derived from Iodine-Induced Specific Cleavage for Identification and Quantitation of DNA Phosphorothioate Modifications
Cited by: 4
Author(s): Sucheng Zhu, Tao Zheng, Lingxin Kong, Jinli Li, Bo Cao, Michael S. DeMott, Yihua Sun, Ying Chen, Zixin Deng, Peter C. Dedon, Delin You
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0012362

Profiling and Functional Analyses of MicroRNAs and Their Target Gene Products in Human Uterine Leiomyomas
Cited by: 65
Author(s): Jiří Zavadil, Huihui Ye, Zhaojian Liu, Jingjing Wu, Peng Lee, Eva Hernando, Patricia Soteropoulos, Gokce Toruner, Jian Jun Wei
Software Mentions: 2
Published: about 16 years ago

10.3390/biom10060864

Comparative Genomics Determines Strain-Dependent Secondary Metabolite Production in Streptomyces venezuelae Strains
Cited by: 9
Author(s): Woori Kim, Namil Lee, Soonkyu Hwang, Yong Jae Lee, Jihun Kim, Suhyung Cho, Bernhard Ø. Palsson, Byung-Kwan Cho
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-81932-y

Genome-wide comparative analyses reveal selection signatures underlying adaptation and production in Tibetan and Poll Dorset sheep
Cited by: 13
Author(s): Yingyue Zhang, Xianglan Xue, Yue Liu, Adam Abied, Yangyang Ding, Shengguo Zhao, Wenqiang Wang, Liqing Ma, Ji-Jun Guo, Weijun Guan, Pu Yun, Joram M. Mwacharo, Jianlin Han, Yue Ma, Qianjun Zhao
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.7604

Gene expression analyses of primary melanomas reveal CTHRC1 as an important player in melanoma progression
Cited by: 31
Author(s): Johanna Eriksson, Vadim Le Joncour, Pirjo Nummela, Tiina Jahkola, Susanna Virolainen, Pirjo Laakkonen, Olli Saksela, Erkki Hölttä
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-021-83015-4

Transcriptome analysis of the procession from chronic pancreatitis to pancreatic cancer and metastatic pancreatic cancer
Cited by: 4
Author(s): Jihao Tu, Zhehao Huang, Yin Wang, Meijing Wang, Zukun Yin, Xianglin Mei, Meiying Li, Lisha Li
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86049-w

Transcriptomic insight into the translational value of two murine models in human atopic dermatitis
Cited by: 3
Author(s): Young-Won Kim, Eun-A Ko, Sung-Cherl Jung, Dong-Hee Lee, Yelim Seo, Seong-Tae Kim, Jung-Ha Kim, Hyoweon Bang, Tong Zhou, Jae‐Hong Ko
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2407-6-54

Cross-platform expression profiling demonstrates that SV40 small tumor antigen activates Notch, Hedgehog, and Wnt signaling in human cells
Cited by: 17
Author(s): Mohamed Ali-Seyed, Noelani Laycock, Suresh Karanam, Wenming Xiao, Eric T. Blair, Carlos S. Moreno
Software Mentions: 2
Published: over 20 years ago

10.1038/s41598-021-89282-5

A study of deregulated MMR pathways and anticancer potential of curcuma derivatives using computational approach
Cited by: 1
Author(s): Priyanjali Bhattacharya, Trupti Patel
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0041224

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads
Cited by: 37
Author(s): Colin Davenport, Jens Neugebauer, Nils Beckmann, Benedikt Friedrich, Burim Kameri, Svea Kokott, Malte Paetow, Björn Siekmann, Matthias Wieding-Drewes, Markus Wienhöfer, S. Wolf, Burkhard Tümmler, Volker Ahlers, Frauke Sprengel
Software Mentions: 2
Published: about 14 years ago

10.1038/s41598-021-91013-9

e-Nature Positive Emotions Photography Database (e-NatPOEM): affectively rated nature images promoting positive emotions
Cited by: 7
Author(s): Daniela Dal Fabbro, Giulia Catissi, Gustavo Benvenutti Borba, Luciano Moreira Lima, Erika Hingst‐Zaher, João Otávio Rosa, Elivane da Silva Victor, Letícia Bernardes, Tinely Souza, Eliseth Ribeiro Leão
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0092202

A Microarray-Based Analysis of Gametogenesis in Two Portuguese Populations of the European Clam Ruditapes decussatus
Cited by: 14
Author(s): Joana Sousa, Massimo Milan, Luca Bargelloni, Marianna Pauletto, Domitília Matias, Sandra Joaquim, Ana Margarete Matias, Virgile Quillien, Alexandra Leitão, Arnaud Huvet
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0104709

Functional Networks of Nucleocytoplasmic Transport-Related Genes Differentiate Ischemic and Dilated Cardiomyopathies. A New Therapeutic Opportunity
Cited by: 26
Author(s): María Micaela Molina-Navarro, Juan Carlos Triviño, Luis Martínez‐Dolz, Francisca Lago, José Ramón González-Juanatey, Manuel Portolés, Miguel Rivera
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0064829

Transcriptome Analysis Reveals New Insights into the Modulation of Endometrial Stromal Cell Receptive Phenotype by Embryo-Derived Signals Interleukin-1 and Human Chorionic Gonadotropin: Possible Involvement in Early Embryo Implantation
Cited by: 35
Author(s): Amélie Bourdiec, Ézéquiel Calvo, Ch.V. Rao, Ali Akoum
Software Mentions: 2
Published: over 13 years ago

10.1186/1755-8794-2-57

Evaluation of a new high-dimensional miRNA profiling platform
Cited by: 24
Author(s): Julie M. Cunningham, Ann L. Oberg, Pedro M. Borralho, Betsy T. Kren, Amy J. French, Liang Wang, Brian M. Bot, Bruce W. Morlan, Kevin A.T. Silverstein, Rod Staggs, Yan Zeng, Anne Françoise Lamblin, Christopher A. Hilker, Jie Fan, Clifford J. Steer, Stephen N. Thibodeau
Software Mentions: 2
Published: about 17 years ago

10.1038/s41598-021-97879-z

Deep saliency models learn low-, mid-, and high-level features to predict scene attention
Cited by: 8
Author(s): Taylor R. Hayes, John M. Henderson
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0013453

Reversible Block of Mouse Neural Stem Cell Differentiation in the Absence of Dicer and MicroRNAs
Cited by: 66
Author(s): Therése Andersson, Sabhi Rahman, Stephen N. Sansom, Jessica Alsiö, Masahiro Kaneda, James Smith, Dónal O’Carroll, Alexander Tarakhovsky, Frederick J. Livesey
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0215908

Wild-type and SAMP8 mice show age-dependent changes in distinct stem cell compartments of the interfollicular epidermis
Cited by: 8
Author(s): Gopakumar Changarathil, Karina Ramírez, Hiroko Isoda, Aiko Sada, Hiromi Yanagisawa
Software Mentions: 2
Published: over 7 years ago

10.1126/scisignal.abe1202

High-resolution structures of the SARS-CoV-2 2′- <i>O</i> -methyltransferase reveal strategies for structure-based inhibitor design
Cited by: 132
Author(s): Mónica Rosas‐Lemus, G. Minasov, L. Shuvalova, Nicole L. Inniss, O. Kiryukhina, J.S. Brunzelle, K.J.F. Satchell
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-019-5650-0

Association of pathway mutation with survival after recurrence in colorectal cancer patients treated with adjuvant fluoropyrimidine and oxaliplatin chemotherapy
Cited by: 2
Author(s): Dae Won Lee, Sae Won Han, Yongjun Cha, Jeong Mo Bae, Hwang Phill Kim, Jaemyun Lyu, Hyojun Han, Hyoki Kim, Hoon Jang, Duhee Bang, Jae Kyung Won, Seung Yong Jeong, Kyu Joo Park, Gyeong Hoon Kang, Tae You Kim
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0003794

Comprehensive Dissection of PDGF-PDGFR Signaling Pathways in PDGFR Genetically Defined Cells
Cited by: 103
Author(s): Erxi Wu, Nathan Palmer, Ze Tian, Annie P. Moseman, Michal Galdzicki, Xuetao Wang, Bonnie Berger, Hongbing Zhang, Isaac S. Kohane
Software Mentions: 2
Published: almost 18 years ago

10.1155/2013/730210

Computational and Bioinformatics Frameworks for Next-Generation Whole Exome and Genome Sequencing
Cited by: 45
Author(s): Marisa Dolled‐Filhart, Michael Lee, Chih-wen Ou-Yang, Rajini Haraksingh, Jimmy C. Lin
Software Mentions: 2
Published: over 13 years ago

10.1186/1745-6150-1-18

Variation in fiberoptic bead-based oligonucleotide microarrays: dispersion characteristics among hybridization and biological replicate samples
Cited by: 21
Author(s): Jaroslav Novák, Mia Miller, Douglas A. Bell
Software Mentions: 2
Published: about 20 years ago

10.1128/AEM.01808-20

Mapping the Efficacy and Mode of Action of Ethylzingerone [4-(3-Ethoxy-4-Hydroxyphenyl) Butan-2-One] as an Active Agent against <i>Burkholderia</i> Bacteria
Cited by: 1
Author(s): Laura Rushton, Ahmad Khodr, Florence Ménard-Szczebara, Jean‐Yves Maillard, Sylvie Cupferman, Eshwar Mahenthiralingam
Software Mentions: 2
Published: almost 6 years ago

10.1186/1755-8794-7-12

Exploring the molecular causes of hepatitis B virus vaccination response: an approach with epigenomic and transcriptomic data
Cited by: 20
Author(s): LU Yi-chen, Yi C, Weili Yan, Christine Nardini
Software Mentions: 2
Published: over 12 years ago

10.1155/2014/639142

RSSI-Based Smooth Localization for Indoor Environment
Cited by: 6
Author(s): Yujian Wang, Bin Zhao, Zhaohui Jiang
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0000145

Heterologous Tissue Culture Expression Signature Predicts Human Breast Cancer Prognosis
Cited by: 8
Author(s): Eun Sung Park, Ju Seog Lee, Hyun Goo Woo, Fenghuang Zhan, Joanna H. Shih, John D. Shaughnessy, J. Frederic Mushinski
Software Mentions: 2
Published: over 19 years ago

10.1002/advs.201800341

Screening Small Metabolites from Cells as Multifunctional Coatings Simultaneously Improves Nanomaterial Biocompatibility and Functionality
Cited by: 8
Author(s): Anqi Sun, Zhan Ban, Mu Li, Xiangang Hu
Software Mentions: 2
Published: over 8 years ago

10.3390/s101009026

Wearable Systems for Monitoring Mobility-Related Activities in Chronic Disease: A Systematic Review
Cited by: 105
Author(s): Lara Allet, Ruud H. Knols, Kei Shirato, Eling D. de Bruin
Software Mentions: 2
Published: almost 16 years ago

10.3390/s100807772

A Review of Accelerometry-Based Wearable Motion Detectors for Physical Activity Monitoring
Cited by: 837
Author(s): Chen-Chung Yang, Yeh‐Liang Hsu
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0013865

MEG Responses to the Perception of Global Structure within Glass Patterns
Cited by: 12
Author(s): Jennifer B. Swettenham, Stephen J. Anderson, Ngoc Jade Thai
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12920-019-0477-8

Transcriptomic and ChIP-sequence interrogation of EGFR signaling in HER2+ breast cancer cells reveals a dynamic chromatin landscape and S100 genes as targets
Cited by: 8
Author(s): Miguel Nava, Pranabananda Dutta, Nathan R. Zemke, Robin Farias‐Eisner, Jaydutt V. Vadgama, Yanyuan Wu
Software Mentions: 2
Published: over 7 years ago

10.1089/ast.2016.1533

Habitability on Early Mars and the Search for Biosignatures with the ExoMars Rover
Cited by: 350
Author(s): Jorge L. Vago, Francès Westall, A. J. Coates, R. Jaumann, Oleg Korablev, Valérie Ciarletti, И. Г. Митрофанов, Jean-Luc Josset, M. C. De Sanctis, Jean‐Pierre Bibring, Fernando Rull, Fred Goesmann, Harald Steininger, W. Goetz, W. B. Brinckerhoff, Cyril Szopa, F. Raulin, Howell G. M. Edwards, Lyle G. Whyte, Alberto González Fairén, J. C. Bridges, Ernst Hauber, G. G. Ori, Stéphanie C. Werner, D. Loizeau, R. O. Kuzmin, R. M. E. Williams, J. Flahaut, F. Forget, D. Rodionov, H. Svedhem, E. Sefton‐Nash, Gerhard Kminek, L. Lorenzoni, Luc Joudrier, В. А. Михайлов, Alexander Zashchirinskiy, S. Alexashkin, F. Calantropio, Andrea Merlo, Pantelis Poulakis, Olivier Witasse, Olivier Bayle, Silvia Bayón, Uwe J. Meierhenrich, John Carter, Juan Manuel García‐Ruiz, P. Baglioni, A. F. C. Haldemann, Andrew Ball, A. Debus, Robert Lindner, Frédéric Haessig, D. Monteiro, R. Trautner, Christoph Voland, Pierre Rebeyre, D. Goulty, F. Didot, Stephen Durrant, Eric Zekri, D. Koschny, Andrea De Toni, Gianfranco Visentin, Martin Zwick, M. van Winnendael, Martín Azkarate, Christophe Carreau
Software Mentions: 2
Published: about 9 years ago

10.18632/oncotarget.10586

Bioinformatics facilitating the use of microarrays to delineate potential miRNA biomarkers in aristolochic acid nephropathy
Cited by: 3
Author(s): Yana Lv, Yumei Que, Qiao Su, Qiang Li, Xi Chen, Haitao Lü
Software Mentions: 2
Published: about 10 years ago

10.1186/1755-8794-5-48

Integrative analysis of neuroblastoma and pheochromocytoma genomics data
Cited by: 15
Author(s): Péter M. Szabó, Miklós Pintér, Dorottya Szabó, Adrienn Zsippai, Attila Patócs, András Falus, Kàroly Rácz, Péter Igaz
Software Mentions: 2
Published: almost 14 years ago

10.3390/s8053299

Hyperspectral Sensor Data Capability for Retrieving Complex Urban Land Cover in Comparison with Multispectral Data: Venice City Case Study (Italy)
Cited by: 54
Author(s): Rosa Maria Cavalli, Lorenzo Fusilli, Simone Pascucci, Stefano Pignatti, Federico Santini
Software Mentions: 2
Published: over 18 years ago

10.3390/s130506183

A Stratified Acoustic Model Accounting for Phase Shifts for Underwater Acoustic Networks
Cited by: 8
Author(s): Ping Wang, Lin Zhang, Victor O. K. Li
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0168585

The Effect of Random Error on Diagnostic Accuracy Illustrated with the Anthropometric Diagnosis of Malnutrition
Cited by: 31
Author(s): Emmanuel Grellety, Michael Golden
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-11-156

Delineation of amplification, hybridization and location effects in microarray data yields better-quality normalization
Cited by: 4
Author(s): Marc Hulsman, Anouk Mentink, Eugene P. van Someren, Koen J. Dechering, Jan de Boer, Marcel J. T. Reinders
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0006693

A Core MYC Gene Expression Signature Is Prominent in Basal-Like Breast Cancer but Only Partially Overlaps the Core Serum Response
Cited by: 129
Author(s): Sanjay Chandriani, Eirik Frengen, Victoria H. Cowling, Sarah A. Pendergrass, Charles M. Perou, Michael L. Whitfield, Michael Cole
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0083762

The Effect of Gestational Age on Angiogenic Gene Expression in the Rat Placenta
Cited by: 13
Author(s): Kanchan Vaswani, Melissa Hum, Hsiu‐Wen Chan, Jennifer Ryan, Ryan J Wood-Bradley, Marloes Dekker Nitert, Murray D. Mitchell, James A. Armitage, Gregory E. Rice
Software Mentions: 2
Published: over 12 years ago

10.1186/s12920-020-00733-w

A machine learning framework for genotyping the structural variations with copy number variant
Cited by: 1
Author(s): Zheng Tian, Xiaoyan Zhu, Xuanping Zhang, Zhongmeng Zhao, Xin Yi, Jiayin Wang, Hongle Li
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2407-13-178

A combined blood based gene expression and plasma protein abundance signature for diagnosis of epithelial ovarian cancer - a study of the OVCAD consortium
Cited by: 27
Author(s): Dietmar Pils, Dan Tong, G. Hager, Eva Obermayr, Stefanie Aust, Georg Heinze, Martin Köhl, Eva Schuster, Andrea Wolf, Jalid Sehouli, Elena Ioana Braicu, Ignace Vergote, Toon Van Gorp, Sven Mahner, Nicole Concin, Paul Speiser, Robert Zeillinger
Software Mentions: 2
Published: over 13 years ago

10.3390/s16020152

Spectral Similarity Assessment Based on a Spectrum Reflectance-Absorption Index and Simplified Curve Patterns for Hyperspectral Remote Sensing
Cited by: 11
Author(s): Di Ma, Jun Li, Jian Huang, Huali Li, Ping Liu, Huijuan Chen, Jing Qian
Software Mentions: 2
Published: over 10 years ago

10.3390/biom10091253

The Morphoregulatory Role of Thidiazuron: Metabolomics-Guided Hypothesis Generation for Mechanisms of Activity
Cited by: 17
Author(s): Lauren A. E. Erland, Ryland T. Giebelhaus, J. M. R. Victor, Susan J. Murch, Praveen K. Saxena
Software Mentions: 2
Published: about 6 years ago

10.1089/ast.2016.1551

The Mars Organic Molecule Analyzer (MOMA) Instrument: Characterization of Organic Material in Martian Sediments
Cited by: 164
Author(s): Fred Goesmann, W. B. Brinckerhoff, F. Raulin, W. Goetz, Ryan M. Danell, Stéphanie Getty, Sandra Siljeström, Helge Mißbach, Harald Steininger, Ricardo Arévalo, Arnaud Buch, Caroline Freissinet, Andrej Grubisic, Uwe J. Meierhenrich, V. Pinnick, Fabien Stalport, Cyril Szopa, Jorge L. Vago, Robert Lindner, Mitchell D. Schulte, J. R. Brucato, Daniel P. Glavin, N. Grand, Xiang Li, F. H. W. van Amerom
Software Mentions: 2
Published: about 9 years ago

10.3390/s17051117

Characterization of Fine Metal Particles Derived from Shredded WEEE Using a Hyperspectral Image System: Preliminary Results
Cited by: 16
Author(s): Gabriele Candiani, Nicoletta Picone, L. Pompilio, Monica Pepe, Marcello Colledani
Software Mentions: 2
Published: over 9 years ago

10.1186/s12920-015-0090-4

BMP2 response pattern in human lung fibroblasts predicts outcome in lung adenocarcinomas
Cited by: 15
Author(s): Michal Rajski, Annika Sääf, Martin Buess
Software Mentions: 2
Published: over 11 years ago

10.1186/s12920-018-0415-1

Distributed gene clinical decision support system based on cloud computing
Cited by: 2
Author(s): Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Chao Wang, Xuehai Zhou
Software Mentions: 2
Published: almost 8 years ago

10.1002/advs.201901380

Targeting YAP1/LINC00152/FSCN1 Signaling Axis Prevents the Progression of Colorectal Cancer
Cited by: 106
Author(s): Chunlin Ou, Zhenqiang Sun, Xiaoyun He, Xiaoling Li, Songqing Fan, Xiang Zheng, Ping Qiu, Guiyuan Li, Xiayu Li, Jian Ma
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0019908

The Transcriptome of Human Epicardial, Mediastinal and Subcutaneous Adipose Tissues in Men with Coronary Artery Disease
Cited by: 42
Author(s): Sandra Guauque-Olarte, Nathalie Gaudreault, Marie-Ève Piché, Dominique Fournier, Pascale Mauriège, Patrick Mathieu, Yohan Bossé
Software Mentions: 2
Published: over 15 years ago

10.1186/s12920-015-0101-5

Molecular subtypes of urothelial carcinoma are defined by specific gene regulatory systems
Cited by: 55
Author(s): Pontus Eriksson, Mattias Aine, Srinivas Veerla, Fredrik Liedberg, Gottfrid Sjödahl, Mattias Höglund
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0025925

Diverting the Flux of the JA Pathway in Nicotiana attenuata Compromises the Plant's Defense Metabolism and Fitness in Nature and Glasshouse
Cited by: 38
Author(s): Michael Stitz, Ian Thomas Baldwin, Emmanuel Gaquerel
Software Mentions: 2
Published: almost 15 years ago

10.1186/1755-8794-4-57

Identification of transcriptional regulatory networks specific to pilocytic astrocytoma
Cited by: 18
Author(s): Hrishikesh Deshmukh, Jinsheng Yu, Jahangheer Shaik, Tobey J. MacDonald, Arie Perry, Jacqueline E. Payton, David H. Gutmann, Mark A. Watson, Rakesh Nagarajan
Software Mentions: 2
Published: about 15 years ago

10.1186/s13690-018-0309-x

Predictors of mortality among under-five children with severe acute malnutrition, Northwest Ethiopia: an institution based retrospective cohort study
Cited by: 24
Author(s): Fasil Wagnew, Debrework Tesgera Beshah, Mengistu Mekonnen, Amanuel Alemu Abajobir
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0091353

Natural Antisense Transcripts and Long Non-Coding RNA in Neurospora crassa
Cited by: 41
Author(s): Yamini Arthanari, Christian Heintzen, Sam Griffiths-Jones, Susan K. Crosthwaite
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0062767

Observational Bias during Nutrition Surveillance: Results of a Mixed Longitudinal and Cross-Sectional Data Collection System in Northern Nigeria
Cited by: 11
Author(s): Emmanuel Grellety, Francisco J. Luquero, Christopher Mambula, Hassana H. Adamu, Greg J. Elder, Klaudia Porten
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2407-9-104

Prediction of breast cancer by profiling of urinary RNA metabolites using Support Vector Machine-based feature selection
Cited by: 65
Author(s): Carsten Henneges, Dino Bullinger, Richard Fux, Natascha Friese, Harald Seeger, Hans Neubauer, Stefan Laufer, Christoph H. Gleiter, Matthias Schwab, Andreas Zell, Bernd Kammerer
Software Mentions: 2
Published: over 17 years ago

10.3390/s19194079

Wearable-Based Affect Recognition—A Review
Cited by: 98
Author(s): Philip Schmidt, Attila Reiss, Robert Dürichen, Kristof Van Laerhoven
Software Mentions: 2
Published: almost 7 years ago

10.3390/s19224931

Physiological Responses During Hybrid BNCI Control of an Upper-Limb Exoskeleton
Cited by: 14
Author(s): Francisco J. Badesa, Jorge Díez, José Catalán, Emilio Trigili, Francesca Cordella, Marius Nann, Simona Crea, Surjo R. Soekadar, Loredana Zollo, Nicola Vitiello, Nicolás García-Aracil
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12885-017-3109-8

Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts
Cited by: 12
Author(s): Lina Leiss, Ercan Mutlu, Anne Margrete Øyan, Tao Yan, Oleg Tsinkalovsky, Linda Sleire, Kjell Petersen, Mohummad Aminur Rahman, Mireille Kayitesi Johannessen, Siddharta S. Mitra, Hege Karine Jacobsen, Krishna M. Talasila, Hrvoje Miletić, Inge Jonassen, Xingang Li, Nicolas H.C. Brons, Karl‐Henning Kalland, Jian Wang, Per Øyvind Enger
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0069245

Latitudinal Diversity Gradients in New World Bats: Are They a Consequence of Niche Conservatism?
Cited by: 46
Author(s): María João Ramos Pereira, Jorge M. Palmeirim
Software Mentions: 2
Published: about 13 years ago

10.1186/s12885-015-1895-4

Argonaute 2 and nasopharyngeal carcinoma: a genetic association study and functional analysis
Cited by: 14
Author(s): Peiyao Li, Jinfeng Meng, Yun Zhai, Hongxing Zhang, Lan Yu, Zhifu Wang, Xiao-Ai Zhang, Pengbo Cao, Xi Chen, Yaling Han, Yang Zhang, Huipeng Chen, Yan Ling, Yuxia Li, Ying Cui, Jin Xin Bei, Yi Xin Zeng, Fuchu He, Gangqiao Zhou
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0003474

Transcriptional and Functional Profiling of Human Embryonic Stem Cell-Derived Cardiomyocytes
Cited by: 211
Author(s): Feng Cao, Roger A. Wagner, Kitchener D. Wilson, Xiaoyan Xie, Ji-Dong Fu, Micha Drukker, Andrew Lee, Gary Tse, Sanjiv S. Gambhir, Irving L. Weissman, Robert C. Robbins, Joseph C. Wu
Software Mentions: 2
Published: almost 18 years ago

10.1371/journal.pone.0241416

Mind the gap: What explains the poor-non-poor inequalities in severe wasting among under-five children in low- and middle-income countries? Compositional and structural characteristics
Cited by: 6
Author(s): Adeniyi Francis Fagbamigbe, Ngianga Bakwin Kandala, Olalekan A. Uthman
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0093677

TraV: A Genome Context Sensitive Transcriptome Browser
Cited by: 21
Author(s): Sascha Dietrich, Sandra Wiegand, Heiko Liesegang
Software Mentions: 2
Published: over 12 years ago

10.3390/s20164551

CNN and LSTM-Based Emotion Charting Using Physiological Signals
Cited by: 50
Author(s): Muhammad Najam Dar, M. Usman Akram, Sajid Gul Khawaja, Amit N. Pujari
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-019-5328-7

Identification of non-invasive biomarkers for chronic atrophic gastritis from serum exosomal microRNAs
Cited by: 27
Author(s): Hong Liu, Peiwu Li, Weiqin Yang, Hong Mi, Jinglin Pan, Yuancheng Huang, Zheng-kun Hou, Qiuke Hou, Qi Luo, Fengbin Liu
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0254098

Heart rate variability analysis for the assessment of immersive emotional arousal using virtual reality: Comparing real and virtual scenarios
Cited by: 9
Author(s): Javier Marín‐Morales, Juan Luis Higuera-Trujillo, Jaime Guixeres, Carmen Llinares, Mariano Alcañíz, Gaetano Valenza
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.11570

Comparative profiling between primary colorectal carcinomas and metastases identifies heterogeneity on drug resistance
Cited by: 10
Author(s): Feng Luo, Jinbang Li, Shuai Wu, Xuefang Wu, Meixiang Chen, Xueyun Zhong, Kunping Liu
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0055368

Expression Profile of Ectopic Olfactory Receptors Determined by Deep Sequencing
Cited by: 219
Author(s): Caroline Flegel, Stavros Manteniotis, Sandra Osthold, Hanns Hatt, Günter Gisselmann
Software Mentions: 2
Published: over 13 years ago

10.3390/s21041138

Open-Design for a Smart Cover of a Night-Time Telescope for Day-Time Use
Cited by: 1
Author(s): R. Cedazo, Alberto Brunete, Hugo R. Albarracin, Esteban González
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0039158

An Ultra-Fast Metabolite Prediction Algorithm
Cited by: 1
Author(s): Zheng Yang, Murray Grant
Software Mentions: 2
Published: about 14 years ago

10.1007/978-3-030-49392-9_15

Results from a Replicated Experiment on the Affective Reactions of Novice Developers When Applying Test-Driven Development
Cited by: 0
Author(s): Simone Romano, Giuseppe Scanniello, María Teresa Baldassarre, Davide Fucci, Danilo Caivano
Software Mentions: 2
Published: over 6 years ago

10.3390/s21051792

Learning Subject-Generalized Topographical EEG Embeddings Using Deep Variational Autoencoders and Domain-Adversarial Regularization
Cited by: 7
Author(s): Juan Lorenzo Hagad, Tsukasa Kimura, Kenichi Fukui, Masayuki Numao
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2091-11-38

Sex-different hepatic glycogen content and glucose output in rats
Cited by: 38
Author(s): Catharina Gustavsson, Kamal Yassin, Erik Wahlström, Louisa Cheung, Johan Lindberg, Kerstin Brismar, Claes‐Göran Östenson, Gunnar Norstedt, Petra Tollet-Egnell
Software Mentions: 2
Published: almost 16 years ago

10.1186/1471-2180-12-22

A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensisinfection
Cited by: 24
Author(s): Christian M. Probst, Rodrigo A Silva, Juliana Perrone Bezerra de Menezes, Taís Fontoura de Almeida, Ivana Nunes Gomes, Andreia Cristine Dallabona, Luiz Shozo Ozaki, Gregory A. Buck, Daniela Parada Pavoni, Marco Aurélio Krieger, Patrícia Sampaio Tavares Veras
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2105-7-353

A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
Cited by: 12
Author(s): Anne-Mette K. Hein, Sylvia Richardson
Software Mentions: 2
Published: about 20 years ago

10.1371/journal.pone.0074432

Next-Generation Sequence Analysis of Cancer Xenograft Models
Cited by: 32
Author(s): Fernando Rossello, Richard W. Tothill, Kara Britt, Kieren D. Marini, Jeanette Falzon, David M. Thomas, Craig D. Peacock, Luigi Marchionni, Jason Li, Samara Bennett, Erwin Tantoso, Tracey Brown, Philip Wai Hong Chan, Luciano G. Martelotto, D. Neil Watkins
Software Mentions: 2
Published: almost 13 years ago

10.3390/s21165279

Rapid Foreign Object Detection System on Seaweed Using VNIR Hyperspectral Imaging
Cited by: 6
Author(s): Donghoon Kwak, Guk-Jin Son, Mi‐Kyung Park, Young-Duk Kim
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0065324

To Clone or Not to Clone? Induced Pluripotent Stem Cells Can Be Generated in Bulk Culture
Cited by: 34
Author(s): Charlotte A. Willmann, Hatim Hemeda, Lisa A. Pieper, Michael Lenz, Jie Qin, Sylvia Joussen, Stephanie Sontag, Paul Wanek, Bernd Denecke, H Schüler, Martin Zenke, Wolfgang Wagner
Software Mentions: 2
Published: over 13 years ago