cran: SAM | Projects | Ecosyste.ms: Papers

10.3389/fnint.2012.00113

The Interplay between Emotion and Cognition in Autism Spectrum Disorder: Implications for Developmental Theory
Cited by: 91
Author(s): Sebastian Gaigg
Software Mentions: 2
Published: over 14 years ago

10.3389/fmicb.2019.00107

Survival Mechanisms of Campylobacter hepaticus Identified by Genomic Analysis and Comparative Transcriptomic Analysis of in vivo and in vitro Derived Bacteria
Cited by: 19
Author(s): Thi Thu Hao Van, Jake A. Lacey, Ben Vezina, Canh Phung, Arif Anwar, Peter C. Scott, Robert J. Moore
Software Mentions: 2
Published: over 7 years ago

10.1186/1755-8794-5-33

The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated
Cited by: 29
Author(s): Shubin Shahab, Lilya V. Matyunina, Christopher G. Hill, Limin Wang, Roman Mezencev, L. DeEtte Walker, John F. McDonald
Software Mentions: 2
Published: almost 14 years ago

10.3390/ani11061693

Evaluation of Tannin Extracts, Leonardite and Tributyrin Supplementation on Diarrhoea Incidence and Gut Microbiota of Weaned Piglets
Cited by: 14
Author(s): Matteo Dell’Anno, Serena Reggi, V. Caprarulo, Monika Hejna, C.A. Sgoifo Rossi, Maria Luisa Callegari, Alfonso Baldi, Luciana Rossi
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2121-8-S1-S8

Utility of multispectral imaging for nuclear classification of routine clinical histopathology imagery
Cited by: 47
Author(s): Laura E. Boucheron, Zhiqiang Bi, Neal R. Harvey, B. S. Manjunath, David L. Rimm
Software Mentions: 2
Published: about 19 years ago

10.1186/1755-8794-4-35

Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status
Cited by: 37
Author(s): Xiang Guo, Qingrong Chen, Young K. Song, Jun S. Wei, Javed Khan
Software Mentions: 2
Published: over 15 years ago

10.1186/1755-8794-2-65

Gene expression profiling in sinonasal adenocarcinoma
Cited by: 32
Author(s): Dominique Tripodi, Sylvia Quéméner, Karine Renaudin, Christophe Ferron, O. Malard, Isabelle Guisle‐Marsollier, Véronique Sebille, Christian Verger, C. Géraut, Catherine Gratas
Software Mentions: 2
Published: over 16 years ago

10.1186/s12859-019-3280-9

Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data
Cited by: 37
Author(s): Shifu Chen, Yanqing Zhou, Yaru Chen, Tanxiao Huang, Wenting Liao, Yun Xu, Zhicheng Li, Jia Gu
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.00863

The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes
Cited by: 14
Author(s): Nan Song, Yuehua Geng, Xinghao Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fnmol.2021.651355

Single-Nucleus Chromatin Accessibility Landscape Reveals Diversity in Regulatory Regions Across Distinct Adult Rat Cortex
Cited by: 7
Author(s): Yeya Yu, Xiaoyü Wei, Qiuting Deng, Qing Lan, Yiping Guo, Lei Han, Yue Yuan, Peng Fan, Peng Wu, Shuncheng Shangguan, Yang Liu, Yiwei Lai, Giacomo Volpe, Miguel A. Esteban, Chuanyu Liu, Yong Hou, Longqi Liu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12920-016-0218-1

A 19-Gene expression signature as a predictor of survival in colorectal cancer
Cited by: 60
Author(s): Nurul Ainin Abdul Aziz, Norfilza Mohd Mokhtar, Roslan Harun, Manir Hossain Mollah, Isa Mohamed Rose, Ismail Sagap, Azmi Mohd Tamil, Wan Zurinah Wan Ngah, A. Rahman A. Jamal
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12881-020-01095-x

Whole-exome sequencing identifies a novel mutation in spermine synthase gene (SMS) associated with Snyder-Robinson Syndrome
Cited by: 2
Author(s): Talal Jamil Qazi, Qiao Wu, Ailikemu Aierken, Daru Lu, Ihtisham Bukhari, Hafiz Muhammad Jafar Hussain, Jingming Yang, Asif Mir, Hong Qing
Software Mentions: 2
Published: almost 6 years ago

10.3390/e21121141

Non-Volatile Memory Forensic Analysis in Windows 10 IoT Core
Cited by: 4
Author(s): Juan Manuel Castelo Gómez, José Roldán-Gómez, Javier Carrillo Mondéjar, José Luis Martínez
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-15-36

uPEPperoni: An online tool for upstream open reading frame location and analysis of transcript conservation
Cited by: 30
Author(s): Adam Skarshewski, Mitchell Stanton-Cook, Thomas Huber, S. Al Mansoori, Ross Smith, Scott A. Beatson, Joseph A. Rothnagel
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2350-9-17

Genes implicated in multiple sclerosis pathogenesis from consilience of genotyping and expression profiles in relapse and remission
Cited by: 56
Author(s): Ariel Arthur, Patricia J. Armati, Chris R. Bye, Robert Heard, Graeme J. Stewart, John D. Pollard, David R. Booth
Software Mentions: 2
Published: over 18 years ago

10.1186/s12940-018-0387-9

Genomic characterization of chronic lymphocytic leukemia (CLL) in radiation-exposed Chornobyl cleanup workers
Cited by: 9
Author(s): Juhi Ojha, Iryna Dyagil, Stuart C. Finch, Robert F. Reiss, Adam J. de Smith, Semira Gonseth, Mi Zhou, Helen M. Hansen, Amy L. Sherborne, Jean L. Nakamura, Paige M. Bracci, Nataliya Gudzenko, Maureen Hatch, Nataliya Babkina, Mark P. Little, Vadim Chumak, Kyle M. Walsh, Dimitry Bazyka, Joseph L. Wiemels, Lydia B. Zablotska
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2350-15-29

Expression analysis of genes and pathways associated with liver metastases of the uveal melanoma
Cited by: 30
Author(s): Yuanyuan Zhang, Yong Yang, Lei Chen, Jianhong Zhang
Software Mentions: 2
Published: over 12 years ago

10.1186/1755-8794-1-51

Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease
Cited by: 15
Author(s): Jessica D. Tenenbaum, Michael G. Walker, Paul J. Utz, Atul J. Butte
Software Mentions: 2
Published: almost 18 years ago

10.1186/1471-2350-15-80

Meta-analysis of differentially expressed genes in osteosarcoma based on gene expression data
Cited by: 51
Author(s): Zuozhang Yang, Yongbin Chen, Yu Fu, Yihao Yang, Zhang Ya, Yanjin Chen, Dongqi Li
Software Mentions: 2
Published: about 12 years ago

10.3389/fimmu.2021.625586

The Effects of Helicobacter pylori Infection on Microbiota Associated With Gastric Mucosa and Immune Factors in Children
Cited by: 9
Author(s): Wei Zheng, Miao Jin, Lingling Luo, Long Gao, Bin Chen, Xiaoli Shu, Weizhong Gu, Kui Peng, Fubang Li, Hong Zhao, Benson O. A. Botchway, Marong Fang, Mizu Jiang
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2407-6-92

Genomic alterations identified by array comparative genomic hybridization as prognostic markers in tamoxifen-treated estrogen receptor-positive breast cancer
Cited by: 67
Author(s): Wonshik Han, Mi Seon Han, Jason Kang, Ji-Yeon Bae, Ji Hyun Lee, Young Ju Bae, Jeong Eon Lee, Hwa Yong Shin, Ki‐Tae Hwang, Sungeun Hwang, Sung-Won Kim, Dong‐Young Noh
Software Mentions: 2
Published: over 20 years ago

10.3389/fimmu.2019.00468

CD117 (c-Kit) Is Expressed During CD8+ T Cell Priming and Stratifies Sensitivity to Apoptosis According to Strength of TCR Engagement
Cited by: 19
Author(s): Guido Frumento, Jianmin Zuo, Kriti Verma, Wayne Croft, Pradeep Ramagiri, Frederick Chen, Paul Moss
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.6696

Does the use of biological traits predict a smooth landscape of ecosystem functioning?
Cited by: 7
Author(s): Johanna Gammal, Judi E. Hewitt, Joanna Norkko, Alf Norkko, Simon F. Thrush
Software Mentions: 2
Published: almost 6 years ago

10.1186/1741-7015-9-130

A diagnostic algorithm combining clinical and molecular data distinguishes Kawasaki disease from other febrile illnesses
Cited by: 41
Author(s): Xuefeng B. Ling, Kenneth Lau, John T. Kanegaye, Pan Zheng, Syd S. Peng, Jun Ji, Gigi Liu, Yuichiro Sato, Tom Yu, John C. Whitin, James Schilling, Jane C. Burns, Harvey J. Cohen
Software Mentions: 2
Published: over 14 years ago

10.1186/s12879-019-4123-z

DisV-HPV16, versatile and powerful software to detect HPV in RNA sequencing data
Cited by: 1
Author(s): Bingqing Yan, Xinyi Liu, Siwei Zhang, Siyang Yu, Fangjia Tong, Huanhuan Xie, Lixia Song, Yan Zhang, Lanlan Wei
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-213X-9-65

Identification of known and novel pancreas genes expressed downstream of Nkx2.2 during development
Cited by: 31
Author(s): Keith R. Anderson, Peter White, Klaus H. Kaestner, Lori Sussel
Software Mentions: 2
Published: over 16 years ago

10.1002/ece3.5040

Different responses of avian feeding guilds to spatial and environmental factors across an elevation gradient in the central Himalaya
Cited by: 21
Author(s): Zhifeng Ding, Jiankun Liang, Yiming Hu, Zhixin Zhou, Sun Hongbin, Lina Liu, Haijun Liu, Huijian Hu, Xingfeng Si
Software Mentions: 2
Published: over 7 years ago

10.3389/fnhum.2018.00322

Mapping the Spatiotemporal Evolution of Emotional Processing: An MEG Study Across Arousal and Valence Dimensions
Cited by: 11
Author(s): Charis Styliadis, Andreas A. Ioannides, Panagiotis D. Bamidis, Christos Papadelis
Software Mentions: 2
Published: almost 8 years ago

10.1186/1755-8794-1-10

Identification of differentially expressed genes in fibroblasts derived from patients with Dupuytren's Contracture
Cited by: 56
Author(s): Latha Satish, William A. LaFramboise, David B. O’Gorman, Sharon L. Johnson, Benjamin Janto, Bing Siang Gan, Mark E. Baratz, Fang Hu, J. Christopher Post, Garth D. Ehrlich, Sandeep Kathju
Software Mentions: 2
Published: over 18 years ago

10.3389/fmicb.2014.00530

Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus
Cited by: 44
Author(s): Philipp Wiemann, Beatrix E. Lechner, Joshua A. Baccile, Thomas Velk, Wen‐Bing Yin, Jin Woo Bok, Suman B. Pakala, Liliana Losada, William C. Nierman, Frank C. Schroeder, Hubertus Haas, Nancy P. Keller
Software Mentions: 2
Published: almost 12 years ago

10.1002/ece3.370

Gene expression divergence and nucleotide differentiation between males of different color morphs and mating strategies in the ruff
Cited by: 20
Author(s): Robert Ekblom, Lindsay Farrell, David B. Lank, Terry Burke
Software Mentions: 2
Published: almost 14 years ago

10.1186/1471-2334-14-314

Inflammatory and myeloid-associated gene expression before and one day after infant vaccination with MVA85A correlates with induction of a T cell response
Cited by: 19
Author(s): Magali Matsumiya, Stephanie A. Harris, Iman Satti, Lisa Stockdale, Rachel Tanner, Matthew K. O’Shea, Michèle Tameris, Hassan Mahomed, Mark Hatherill, Thomas J. Scriba, Willem A. Hanekom, Helen McShane, Helen A. Fletcher
Software Mentions: 2
Published: about 12 years ago

10.1002/ece3.7289

Temperature but not ocean acidification affects energy metabolism and enzyme activities in the blue mussel, Mytilus edulis
Cited by: 17
Author(s): Omera B. Matoo, Gisela Lannig, Christian Bock, Inna M. Sokolova
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.640054

Identification and Validation of Reference Genes in Clostridium beijerinckii NRRL B-598 for RT-qPCR Using RNA-Seq Data
Cited by: 4
Author(s): Katerina Jureckova, Hana Raschmanová, Jan Kolek, Maryna Vasylkivska, Barbora Branská, Petra Patáková, Ivo Provazník, Karel Sedlář
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.6097

Geographic patterns of insect diversity across China's nature reserves: The roles of niche conservatism and range overlapping
Cited by: 8
Author(s): Yueming Lyu, Xiangping Wang, Jing Luo
Software Mentions: 2
Published: over 6 years ago

10.1002/2017EF000744

Biogeophysical Impacts of Land-Use Change on Climate Extremes in Low-Emission Scenarios: Results From HAPPI-Land
Cited by: 29
Author(s): Annette L. Hirsch, Benoît P. Guillod, Sonia I. Seneviratne, Urs Beyerle, Lena Boysen, Victor Brovkin, Edouard L. Davin, Jonathan C. Doelman, Hyungjun Kim, Dann Mitchell, Tomoko Nitta, Hideo Shiogama, Sarah Sparrow, Elke Stehfest, Detlef P. van Vuuren, Simon Wilson
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-016-0881-4

PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events
Cited by: 40
Author(s): Osagie Izuogu, Abd A. Alhasan, Hani M. Al-Afghani, Mauro Santibanez‐Koref, David J. Elliott, Michael S. Jackson
Software Mentions: 2
Published: over 10 years ago

10.1002/ece3.2138

Microhabitat selection in the common lizard: implications of biotic interactions, age, sex, local processes, and model transferability among populations
Cited by: 15
Author(s): Miguel Peñalver‐Alcázar, Pedro Aragón, Merel C. Breedveld, Patrick S. Fitze
Software Mentions: 2
Published: over 10 years ago

10.17179/excli2017-491

miR-494 protects pancreatic β-cell function by targeting PTEN in gestational diabetes mellitus.
Cited by: 19
Author(s): Yiping He, Jie Bai, Ping Liu, Jianxin Dong, Yajuan Tang, Jiayi Zhou, Ping Han, Jun Xing, Yan Chen, Xiaozhou Yu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12913-016-1741-7

A systematic review of the quality of studies on dementia prevalence in Italy
Cited by: 5
Author(s): G. Bruti, Elisabetta Cavallucci, Michele Mancini, Alessandro Bitossi, Marzia Baldereschi, Sandro Sorbi
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12913-016-1871-y

A systematic review of the quality of studies on dementia prevalence in Italy
Cited by: 7
Author(s): G. Bruti, Elisabetta Cavallucci, Michele Mancini, Alessandro Bitossi, Marzia Baldereschi, Sandro Sorbi
Software Mentions: 2
Published: almost 10 years ago

10.15252/embr.201540476

Abo1, a conserved bromodomain <scp>AAA</scp> ‐ <scp>ATP</scp> ase, maintains global nucleosome occupancy and organisation
Cited by: 20
Author(s): Csenge Gal, Heather E. Murton, Lakxmi Subramanian, Alex J. Whale, Karen Moore, Konrad Paszkiewicz, Sandra Codlin, Jürg Bähler, Kevin M. Creamer, Janet F. Partridge, Robin C. Allshire, Nicholas A. Kent, Simon K. Whitehall
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-9-337

Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
Cited by: 15
Author(s): Wei Dai, Jens M. Teodoridis, Janet Graham, Constanze Zeller, Tim Hui-Ming Huang, Pearlly S. Yan, J. Keith Vass, Robert E. Brown, Jim Paul
Software Mentions: 2
Published: almost 18 years ago

10.1186/s12864-015-1227-8

Pseudogenes transcribed in breast invasive carcinoma show subtype-specific expression and ceRNA potential
Cited by: 33
Author(s): Joshua D. Welch, Jeanette Baran-Gale, Charles M. Perou, Praveen Sethupathy, Jan F. Prins
Software Mentions: 2
Published: over 11 years ago

10.1186/1755-8794-5-48

Integrative analysis of neuroblastoma and pheochromocytoma genomics data
Cited by: 15
Author(s): Péter M. Szabó, Miklós Pintér, Dorottya Szabó, Adrienn Zsippai, Attila Patócs, András Falus, Kàroly Rácz, Péter Igaz
Software Mentions: 2
Published: over 13 years ago

10.1186/s12862-021-01825-6

A comparative genomic approach using mouse and fruit fly data to discover genes involved in testis function in hymenopterans with a focus on Nasonia vitripennis
Cited by: 0
Author(s): Charlotte Lécureuil, Sophie Fouchécourt, Rémi Eliautout, Vanessa Guérin, Kévin Hidalgo, Dorian Neutre, Géraldine Roux, Philippe Monget
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.202888

Genetic landscape of breast cancer and mutation tracking with circulating tumor DNA in Chinese women
Cited by: 6
Author(s): Yinghao Wang, Lizhi Lin, Linhong Li, Jialiang Wen, Yili Chi, Rutian Hao, Xuanxuan Dai, Yizuo Chen, Du-Ping Huang, Yi-Li Zhou, Jie You, Zhiqiang Ye, Hao Chen, Liping Jin, Danxiang Chen, Fan Yang, Erjie Xia, Xueyan Ma, Fengyu Guo, Yunguang Tong, Min Zheng, Ouchen Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12920-020-00733-w

A machine learning framework for genotyping the structural variations with copy number variant
Cited by: 1
Author(s): Zheng Tian, Xiaoyan Zhu, Xuanping Zhang, Zhongmeng Zhao, Xin Yi, Jiayin Wang, Hongle Li
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-019-5328-7

Identification of non-invasive biomarkers for chronic atrophic gastritis from serum exosomal microRNAs
Cited by: 27
Author(s): Hong Liu, Peiwu Li, Weiqin Yang, Hong Mi, Jinglin Pan, Yuancheng Huang, Zheng-kun Hou, Qiuke Hou, Qi Luo, Fengbin Liu
Software Mentions: 2
Published: over 7 years ago

10.3389/fnins.2020.580970

Expected Valence Predicts Choice in a Recurrent Decision Task
Cited by: 1
Author(s): Daniel Thomas Jäger, Melanie Boltzmann, Jens D. Rollnik, Jascha Rüsseler
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2091-11-38

Sex-different hepatic glycogen content and glucose output in rats
Cited by: 38
Author(s): Catharina Gustavsson, Kamal Yassin, Erik Wahlström, Louisa Cheung, Johan Lindberg, Kerstin Brismar, Claes‐Göran Östenson, Gunnar Norstedt, Petra Tollet-Egnell
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12920-015-0090-4

BMP2 response pattern in human lung fibroblasts predicts outcome in lung adenocarcinomas
Cited by: 15
Author(s): Michal Rajski, Annika Sääf, Martin Buess
Software Mentions: 2
Published: about 11 years ago

10.1002/ece3.7769

EST‐SSR‐based landscape genetics of Pseudotaxus chienii , a tertiary relict conifer endemic to China
Cited by: 6
Author(s): Shufeng Li, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 2
Published: about 5 years ago

10.1186/s12920-018-0415-1

Distributed gene clinical decision support system based on cloud computing
Cited by: 2
Author(s): Bo Xu, Changlong Li, Hang Zhuang, Jiali Wang, Qingfeng Wang, Chao Wang, Xuehai Zhou
Software Mentions: 2
Published: over 7 years ago

10.3389/fnmol.2018.00290

Salivary MicroRNAs: Diagnostic Markers of Mild Traumatic Brain Injury in Contact-Sport
Cited by: 68
Author(s): Valentina Di Pietro, Edoardo Porto, Marco Ragusa, Cristina Barbagallo, David Davies, Mario Forcione, Ann Logan, Cinzia Di Pietro, Michele Purrello, Michael J. Grey, Douglas Hammond, Vijay Sawlani, Aron K. Barbey, Antonio Belli
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12920-015-0101-5

Molecular subtypes of urothelial carcinoma are defined by specific gene regulatory systems
Cited by: 55
Author(s): Pontus Eriksson, Mattias Aine, Srinivas Veerla, Fredrik Liedberg, Gottfrid Sjödahl, Mattias Höglund
Software Mentions: 2
Published: about 11 years ago

10.1002/acn3.51119

Using urine to diagnose large‐scale mtDNA deletions in adult patients
Cited by: 10
Author(s): Kristin Nielsen Varhaug, Gonzalo S. Nido, I.F.M. de Coo, Pirjo Isohanni, Anu Suomalainen, Charalampos Tzoulis, Per M. Knappskog, Laurence A. Bindoff
Software Mentions: 2
Published: about 6 years ago

10.1186/1755-8794-4-57

Identification of transcriptional regulatory networks specific to pilocytic astrocytoma
Cited by: 18
Author(s): Hrishikesh Deshmukh, Jinsheng Yu, Jahangheer Shaik, Tobey J. MacDonald, Arie Perry, Jacqueline E. Payton, David H. Gutmann, Mark A. Watson, Rakesh Nagarajan
Software Mentions: 2
Published: about 15 years ago

10.3390/diagnostics10121077

The Activation of Prothrombin Seems to Play an Earlier Role than the Complement System in the Progression of Colorectal Cancer: A Mass Spectrometry Evaluation
Cited by: 6
Author(s): Maider Beitia, Paolo Romano, Gorka Larrinaga, Jon Danel Solano-Iturri, Annalisa Salis, Gianluca Damonte, Marco Bruzzone, Marcello Ceppi, Aldo Profumo
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-10-596

Filling gaps in PPAR-alpha signaling through comparative nutrigenomics analysis
Cited by: 13
Author(s): Duccio Cavalieri, Enrica Calura, Chiara Romualdi, Emmanuela Marchi, Marijana Radonjić, Ben van Ommen, Michael Müller
Software Mentions: 2
Published: over 17 years ago

10.1093/database/baw137

Cryptosporidium hominisgene catalog: a resource for the selection of novelCryptosporidiumvaccine candidates
Cited by: 11
Author(s): Olukemi O. Ifeonu, Raphael Simon, Sharon M. Tennant, Abhineet S. Sheoran, Maria C. Daly, Victor Felix, Jessica C. Kissinger, Giovanni Widmer, Fred Levine, Saul Tzipori, Joana C. Silva
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-017-3498-8

A clustering-based approach for efficient identification of microRNA combinatorial biomarkers
Cited by: 25
Author(s): Yang Yang, Ning Huang, Luning Hao, Wei Kong
Software Mentions: 2
Published: over 9 years ago

10.1186/s12885-015-1895-4

Argonaute 2 and nasopharyngeal carcinoma: a genetic association study and functional analysis
Cited by: 14
Author(s): Peiyao Li, Jinfeng Meng, Yun Zhai, Hongxing Zhang, Lan Yu, Zhifu Wang, Xiao-Ai Zhang, Pengbo Cao, Xi Chen, Yaling Han, Yang Zhang, Huipeng Chen, Yan Ling, Yuxia Li, Ying Cui, Jin Xin Bei, Yi Xin Zeng, Fuchu He, Gangqiao Zhou
Software Mentions: 2
Published: over 10 years ago

10.1093/database/baw022

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis
Cited by: 56
Author(s): Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William J. Faison, Scott Goldweber, Anton Golikov, Naila Gulzar, Konstantinos Karagiannis, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan, Alexey Pschenichnov, Alexandre Rostovtsev, Luis V. Santana‐Quintero, Krista Smith, Elaine E. Thompson, Valery Tkachenko, John Torcivia-Rodriguez, Alin Voskanian, Qing Wan, Jing Wang, Tsung-Jung Wu, Carolyn A. Wilson, Raja Mazumder
Software Mentions: 2
Published: over 10 years ago

10.1093/database/baaa079

Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes
Cited by: 2
Author(s): Hong Cui, Limin Zhang, Bruce A. Ford, Hsin Liang Cheng, James Macklin, Anton A. Reznicek, Julian R. Starr
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/8884229

Next Generation Exome Sequencing of Pediatric Asthma Identifies Rare and Novel Variants in Candidate Genes
Cited by: 4
Author(s): Neda M. Bogari, Amr Amin, Husni H Rayes, Ahmed Abdelmotelb, Mohiuddin M. Taher, Faisal A. Al‐Allaf, Abdellatif Bouazzaoui, Luke O’Gorman, John W. Holloway
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-343

An integrative “omics” approach identifies new candidate genes to impact aroma volatiles in peach fruit
Cited by: 46
Author(s): G. Sánchez, Mónica Venegas-Calerón, Joaquı́n J. Salas, Antonio J. Monforte, M. L. Badenes, Antonio Granell
Software Mentions: 2
Published: over 13 years ago

10.1186/s12885-017-3109-8

Tumour-associated glial host cells display a stem-like phenotype with a distinct gene expression profile and promote growth of GBM xenografts
Cited by: 12
Author(s): Lina Leiss, Ercan Mutlu, Anne Margrete Øyan, Tao Yan, Oleg Tsinkalovsky, Linda Sleire, Kjell Petersen, Mohummad Aminur Rahman, Mireille Kayitesi Johannessen, Siddharta S. Mitra, Hege Karine Jacobsen, Krishna M. Talasila, Hrvoje Miletić, Inge Jonassen, Xingang Li, Nicolas H.C. Brons, Karl‐Henning Kalland, Jian Wang, Per Øyvind Enger
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2148-14-19

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian freshwater crayfishes
Cited by: 85
Author(s): Han Ming Gan, Mark B. Schultz, Christopher M. Austin
Software Mentions: 2
Published: over 12 years ago

10.3389/fpls.2020.00813

Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
Cited by: 16
Author(s): Fabian B. Haas, Noe Fernandez‐Pozo, Rabea Meyberg, Pierre‐François Perroud, Marco Göttig, Nora Stingl, Denis Saint-Marcoux, Jane A. Langdale, Stefan A. Rensing
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2407-9-104

Prediction of breast cancer by profiling of urinary RNA metabolites using Support Vector Machine-based feature selection
Cited by: 65
Author(s): Carsten Henneges, Dino Bullinger, Richard Fux, Natascha Friese, Harald Seeger, Hans Neubauer, Stefan Laufer, Christoph H. Gleiter, Matthias Schwab, Andreas Zell, Bernd Kammerer
Software Mentions: 2
Published: over 17 years ago

10.3389/fpls.2020.610307

Boron: More Than an Essential Element for Land Plants?
Cited by: 30
Author(s): Greice Leal Pereira, João Antônio Siqueira, Willian Batista‐Silva, Flávio Barcellos Cardoso, Adriano Nunes‐Nesi, Wagner L. Araújo
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-017-3980-3

Mining sequence variations in representative polyploid sugarcane germplasm accessions
Cited by: 37
Author(s): Xiping Yang, Song Jiang, Qi You, Dev Paudel, Jisen Zhang, Jianping Wang
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12859-016-0942-8

Intra- and interspecies gene expression models for predicting drug response in canine osteosarcoma
Cited by: 30
Author(s): Jared S. Fowles, Kristen C. Brown, Ann Hess, Dawn L. Duval, Daniel L. Gustafson
Software Mentions: 2
Published: over 10 years ago

10.1155/2014/891761

Dynamic Regulatory Network Reconstruction for Alzheimer’s Disease Based on Matrix Decomposition Techniques
Cited by: 10
Author(s): Wei Kong, Xiaoyang Mou, Xiefei Zhi, Xing Zhang, Yang Yang
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-15-1084

RNA-seq analysis of broiler liver transcriptome reveals novel responses to high ambient temperature
Cited by: 72
Author(s): Derrick Coble, Damarius S. Fleming, Michael E. Persia, C. M. Ashwell, Max F. Rothschild, Carl J. Schmidt, Susan J. Lamont
Software Mentions: 2
Published: over 12 years ago

10.1155/2014/354703

Hypergraph-Based Recognition Memory Model for Lifelong Experience
Cited by: 0
Author(s): Hyoungnyoun Kim, Ji‐Hyung Park
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2180-12-22

A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensisinfection
Cited by: 24
Author(s): Christian M. Probst, Rodrigo A Silva, Juliana Perrone Bezerra de Menezes, Taís Fontoura de Almeida, Ivana Nunes Gomes, Andreia Cristine Dallabona, Luiz Shozo Ozaki, Gregory A. Buck, Daniela Parada Pavoni, Marco Aurélio Krieger, Patrícia Sampaio Tavares Veras
Software Mentions: 2
Published: over 14 years ago

10.1155/2020/8841681

Hierarchical Multimodal Adaptive Fusion (HMAF) Network for Prediction of RGB-D Saliency
Cited by: 2
Author(s): Yiliang Lv, Wujie Zhou
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2407-13-178

A combined blood based gene expression and plasma protein abundance signature for diagnosis of epithelial ovarian cancer - a study of the OVCAD consortium
Cited by: 27
Author(s): Dietmar Pils, Dan Tong, G. Hager, Eva Obermayr, Stefanie Aust, Georg Heinze, Martin Köhl, Eva Schuster, Andrea Wolf, Jalid Sehouli, Elena Ioana Braicu, Ignace Vergote, Toon Van Gorp, Sven Mahner, Nicole Concin, Paul Speiser, Robert Zeillinger
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-2164-9-546

Transcriptional response of rat frontal cortex following acute In Vivo exposure to the pyrethroid insecticides permethrin and deltamethrin
Cited by: 18
Author(s): Joshua Harrill, Zhen Li, Fred A. Wright, Nicholas M. Radio, William R. Mundy, Rogelio Tornero‐Velez, Kevin M. Crofton
Software Mentions: 2
Published: over 17 years ago

10.1186/1471-2148-8-74

Complex signatures of selection for the melanogenic loci TYR, TYRP1 and DCT in humans
Cited by: 52
Author(s): Santos Alonso, Neskuts Izagirre, Isabel Smith Zubiaga, Jesús Gardeazábal, José Luís Díaz-Ramón, J.L. Díaz‐Pérez, Diana Zélénika, María Dolores Boyano, Nico P.M. Smit, Concepción de la Rúa
Software Mentions: 2
Published: over 18 years ago

10.1038/s42003-018-0200-x

Dissection of metabolic reprogramming in polycystic kidney disease reveals coordinated rewiring of bioenergetic pathways
Cited by: 60
Author(s): Christine Podrini, Isaline Rowe, Roberto Pagliarini, Ana S.H. Costa, Marco Chiaravalli, Ivano Di Meo, Hyunho Kim, Gianfranco Distefano, Valeria Tiranti, Feng Qian, Diego di Bernardo, Christian Frezza, Alessandra Boletta
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-7-353

A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
Cited by: 12
Author(s): Anne-Mette K. Hein, Sylvia Richardson
Software Mentions: 2
Published: about 20 years ago

10.1186/s13148-016-0242-1

Genome-wide DNA methylation profiling with MeDIP-seq using archived dried blood spots
Cited by: 31
Author(s): Nicklas Heine Staunstrup, Anna Starnawska, Mette Nyegaard, Lene Christiansen, Anders Lade Nielsen, Anders D. Børglum, Ole Mors
Software Mentions: 2
Published: about 10 years ago

10.3389/fpsyg.2017.01709

Rhythmic Density Affects Listeners' Emotional Response to Microtiming
Cited by: 9
Author(s): Olivier Senn, Claudia Bullerjahn, Lorenz Kilchenmann, Richard von Georgi
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-15-765

Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature
Cited by: 80
Author(s): Alba Nicoletta Mininni, Massimo Milan, Serena Ferraresso, T. Petochi, Patrizia Di Marco, G. Marino, Silvia Livi, Chiara Romualdi, Luca Bargelloni, Tomaso Patarnello
Software Mentions: 2
Published: almost 12 years ago

10.3389/fpsyg.2021.707809

The Effectiveness of Facial Expression Recognition in Detecting Emotional Responses to Sound Interventions in Older Adults With Dementia
Cited by: 4
Author(s): Ying Liu, Zixuan Wang, Ge Yu
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13054-018-2275-7

Plasma mitochondrial DNA and metabolomic alterations in severe critical illness
Cited by: 28
Author(s): Pär I. Johansson, Kiichi Nakahira, Angela Rogers, Michael J. McGeachie, Rebecca M. Baron, Laura E. Fredenburgh, John S. Harrington, Augustine M.K. Choi, Kenneth B. Christopher
Software Mentions: 2
Published: over 7 years ago

10.3389/fpsyg.2018.00657

Physiological Response to Facial Expressions in Peripersonal Space Determines Interpersonal Distance in a Social Interaction Context
Cited by: 55
Author(s): Alice Cartaud, Gennaro Ruggiero, Laurent Ott, Tina Iachini, C. Yann
Software Mentions: 2
Published: about 8 years ago

10.1242/dmm.025239

Genomic profiling of murine mammary tumors identifies potential personalized drug targets for p53 deficient mammary cancers
Cited by: 27
Author(s): Adam D. Pfefferle, Yash N. Agrawal, Daniel C. Koboldt, Krishna L. Kanchi, Jason I. Herschkowitz, Elaine R. Mardis, Jeffrey M. Rosen, Charles M. Perou
Software Mentions: 2
Published: over 10 years ago

10.1186/gb-2011-12-8-r77

Integrated miRNA and mRNA expression profiling of mouse mammary tumor models identifies miRNA signatures associated with mammary tumor lineage
Cited by: 66
Author(s): Min Zhu, Ming Yi, Chang Hee Kim, Chu‐Xia Deng, Yang Li, Daniel Medina, Robert M. Stephens, Jeffrey E. Green
Software Mentions: 2
Published: over 15 years ago

10.3390/cells9020326

Computational Detection of Breast Cancer Invasiveness with DNA Methylation Biomarkers
Cited by: 5
Author(s): Chuyu Wang, Ning Zhao, Linlin Yuan, Xiaoyan Liu
Software Mentions: 2
Published: over 6 years ago

10.3390/cells8080902

Deep Sequencing Reveals Central Nervous System Compartmentalization in Multiple Transmitted/Founder Virus Acute HIV-1 Infection
Cited by: 15
Author(s): Sodsai Tovanabutra, Rujipas Sirijatuphat, Phuc Pham, Lydia Bonar, Elizabeth A. Harbolick, Meera Bose, Hongshuo Song, David C. Chang, Celina Oropeza, Anne Marie O’Sullivan, Joyce Balinang, Eugène Kroon, Donn Colby, Carlo Sacdalan, Joanna Hellmuth, Phillip Chan, Peeriya Prueksakaew, Suteeraporn Pinyakorn, Linda L. Jagodzinski, Duanghathai Sutthichom, Suwanna Pattamaswin, Mark de Souza, Robert A. Gramzinski, Jerome H. Kim, Nelson L. Michael, Merlin L. Robb, Nittaya Phanuphak, Jintanat Ananworanich, Victor Valcour, Gustavo H. Kijak, Eric Sanders‐Buell, Serena Spudich, Mhrp Viral Sequencing Core, Search Study Team
Software Mentions: 2
Published: almost 7 years ago

10.3390/cells9122587

Dynamics of Whole-Genome Contacts of Nucleoli in Drosophila Cells Suggests a Role for rDNA Genes in Global Epigenetic Regulation
Cited by: 5
Author(s): Nickolai A. Tchurikov, Elena S. Klushevskaya, Д. М. Федосеева, Ildar R. Alembekov, Galina I. Kravatskaya, V. R. Chechetkin, Yuri V. Kravatsky, О. В. Кретова
Software Mentions: 2
Published: over 5 years ago

10.1016/j.tcsw.2020.100043

Biofilms of the non-tuberculous Mycobacterium chelonae form an extracellular matrix and display distinct expression patterns
Cited by: 8
Author(s): Perla Jazmín Vega-Domínguez, Eliza J.R. Peterson, Min Pan, Alessandro Di Maio, Saumya Singh, Siva Umapathy, Deepak Kumar Saini, Nitin S. Baliga, Apoorva Bhatt
Software Mentions: 2
Published: over 5 years ago

10.1016/j.tcsw.2021.100051

Mycobacterium abscessus biofilms produce an extracellular matrix and have a distinct mycolic acid profile
Cited by: 20
Author(s): Anja Dokic, Eliza J.R. Peterson, Mario L. Arrieta-Ortiz, Min Pan, Alessandro Di Maio, Nitin S. Baliga, Apoorva Bhatt
Software Mentions: 2
Published: over 4 years ago

10.3390/cells9081864

S-Adenosylmethionine Treatment of Colorectal Cancer Cell Lines Alters DNA Methylation, DNA Repair and Tumor Progression-Related Gene Expression
Cited by: 15
Author(s): Sára Zsigrai, Alexandra Kalmár, Zsófia Brigitta Nagy, Barbara Kinga Barták, Gábor Valcz, Krisztina Andrea Szigeti, Orsolya Galamb, Titanilla Dankó, Anna Sebestyén, Gábor Barna, V. Szabó, Orsolya Pipek, Anna Medgyes-Horváth, István Csabai, Zsolt Tulassay, Péter Igaz, István Takács, Béla Molnár
Software Mentions: 2
Published: almost 6 years ago

10.1089/ast.2016.1551

The Mars Organic Molecule Analyzer (MOMA) Instrument: Characterization of Organic Material in Martian Sediments
Cited by: 164
Author(s): Fred Goesmann, W. B. Brinckerhoff, F. Raulin, W. Goetz, Ryan M. Danell, Stéphanie Getty, Sandra Siljeström, Helge Mißbach, Harald Steininger, Ricardo Arévalo, Arnaud Buch, Caroline Freissinet, Andrej Grubisic, Uwe J. Meierhenrich, V. Pinnick, Fabien Stalport, Cyril Szopa, Jorge L. Vago, Robert Lindner, Mitchell D. Schulte, J. R. Brucato, Daniel P. Glavin, N. Grand, Xiang Li, F. H. W. van Amerom
Software Mentions: 2
Published: about 9 years ago

10.1016/j.stem.2013.09.003

Dynamic Analysis of Gene Expression and Genome-wide Transcription Factor Binding during Lineage Specification of Multipotent Progenitors
Cited by: 84
Author(s): Gillian May, Shamit Soneji, Alex J. Tipping, José Teles, Simon J. McGowan, Mengchu Wu, Yanping Guo, Cristina Fugazza, John Brown, Göran Karlsson, Cristina Pina, Victor Olariu, Stephen Taylor, Daniel G. Tenen, Carsten Peterson, Tariq Enver
Software Mentions: 2
Published: over 12 years ago

Projects: cran: SAM

Science Score: 85/100

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Papers Mentioning SAM 4,566