10.1186/s13059-017-1377-x

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data
Cited by: 17
Author(s): Gerben Menschaert, Xiaojing Wang, Andrew R. Jones, Fawaz Ghali, David Fenyö, Volodimir Olexiouk, Bing Zhang, Eric W. Deutsch, Tobias Ternent, Juan Antonio Vizcaíno
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0013453

Reversible Block of Mouse Neural Stem Cell Differentiation in the Absence of Dicer and MicroRNAs
Cited by: 66
Author(s): Therése Andersson, Sabhi Rahman, Stephen N. Sansom, Jessica Alsiö, Masahiro Kaneda, James Smith, Dónal O’Carroll, Alexander Tarakhovsky, Frederick J. Livesey
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pcbi.1008085

Remote homology search with hidden Potts models
Cited by: 20
Author(s): Grey W Wilburn, Sean R. Eddy
Software Mentions: 2
Published: almost 6 years ago

10.1186/gb-2004-5-9-r69

Cited by: 199
Author(s): Jingjing Wang, Laura Kean, Jingli Yang, Adrian K. Allan, Shireen A. Davies, Paweł Herzyk, Julian A. T. Dow
Software Mentions: 2
Published: over 22 years ago

10.1186/s13059-016-1096-8

TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells
Cited by: 78
Author(s): Lorenzo de la Rica, Özgen Deniz, Kevin Cheng, Christopher D. Todd, Cristina Cruz, Jonathan Houseley, Miguel R. Branco
Software Mentions: 2
Published: almost 10 years ago

10.1155/2014/354703

Hypergraph-Based Recognition Memory Model for Lifelong Experience
Cited by: 0
Author(s): Hyoungnyoun Kim, Ji‐Hyung Park
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-020-61942-y

Co-abundance analysis reveals hidden players associated with high methane yield phenotype in sheep rumen microbiome
Cited by: 13
Author(s): Leila Ghanbari Maman, Fahimeh Palizban, Fereshteh Fallah Atanaki, Naser Elmi, Shohreh Ariaeenejad, Mohammad Reza Ghaffari, Kaveh Kavousi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62467-0

The trends in land surface heat fluxes over global monsoon domains and their responses to monsoon and precipitation
Cited by: 11
Author(s): Jian Zeng, Qiang Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62975-z

Metabolomic alternations of follicular fluid of obese women undergoing in-vitro fertilization treatment
Cited by: 14
Author(s): Jing-Yan Song, Shufen Xiang, Conghui Pang, Jiayin Guo, Zhen‐Gao Sun
Software Mentions: 2
Published: over 6 years ago

10.1155/2014/891761

Dynamic Regulatory Network Reconstruction for Alzheimer’s Disease Based on Matrix Decomposition Techniques
Cited by: 10
Author(s): Wei Kong, Xiaoyang Mou, Xiefei Zhi, Xing Zhang, Yang Yang
Software Mentions: 2
Published: over 12 years ago

10.3390/plants9040503

Physical Dormancy Release in Medicago truncatula Seeds Is Related to Environmental Variations
Cited by: 13
Author(s): Juan P. Renzi, Martin Duchoslav, Jan Brus, Iveta Hradilová, Vilém Pechanec, Tadeáš Václavek, Jitka Machalová, Karel Hron, Jérôme Verdier, Petr Smýkal
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0003794

Comprehensive Dissection of PDGF-PDGFR Signaling Pathways in PDGFR Genetically Defined Cells
Cited by: 103
Author(s): Erxi Wu, Nathan Palmer, Ze Tian, Annie P. Moseman, Michal Galdzicki, Xuetao Wang, Bonnie Berger, Hongbing Zhang, Isaac S. Kohane
Software Mentions: 2
Published: almost 18 years ago

10.1186/1471-2229-10-273

Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees
Cited by: 37
Author(s): Caroline Côté, Francis Boileau, Vicky Roy, Mario Ouellet, Caroline Levasseur, Marie-Josée Morency, Janice E. K. Cooke, Armand Séguin, John Mackay
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13058-019-1195-z

Oral metronomic vinorelbine combined with endocrine therapy in hormone receptor-positive HER2-negative breast cancer: SOLTI-1501 VENTANA window of opportunity trial
Cited by: 19
Author(s): Bárbara Adamo, Meritxell Bellet, Laia Paré, Tomás Pascual, María Vidal, José Alejandro Pérez Fidalgo, S. Blanch, Noelia Martínez, Laura Murillo, Patricia Gómez-Pardo, Ana López-González, Kepa Amillano, Jordi Canes, Patricia Galván, Blanca González-Farré, Xavier González, Patricia Villagrasa, Eva Ciruelos, Aleix Prat
Software Mentions: 2
Published: almost 7 years ago

10.3389/fphys.2020.610049

Physiological Effects of Water Flow Induced Swimming Exercise in Seabream Sparus aurata
Cited by: 16
Author(s): Arjan P. Palstra, Ana Roque, L. Kruijt, Pauline Jéhannet, Jaume Pérez‐Sánchez, Ron P. Dirks
Software Mentions: 2
Published: almost 6 years ago

10.4172/jpb.1000384

Proteome Dynamics of the Specialist Oxalate Degrader Oxalobacter formigenes
Cited by: 13
Author(s): Mellissa L Ellis, James A. Mobley, Ross P. Holmes, John Knight
Software Mentions: 2
Published: over 10 years ago

10.1186/s13054-018-2275-7

Plasma mitochondrial DNA and metabolomic alterations in severe critical illness
Cited by: 28
Author(s): Pär I. Johansson, Kiichi Nakahira, Angela Rogers, Michael J. McGeachie, Rebecca M. Baron, Laura E. Fredenburgh, John S. Harrington, Augustine M.K. Choi, Kenneth B. Christopher
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13059-015-0666-5

Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo
Cited by: 82
Author(s): Masahiko Imashimizu, Hiroki Takahashi, Taku Oshima, Carl McIntosh, Mikhail Bubunenko, Donald L. Court, Mikhail Kashlev
Software Mentions: 2
Published: over 11 years ago

10.4172/jpb.S9-001

Predicting Protein Model Quality from Sequence Alignments by Support Vector Machines
Cited by: 6
Author(s): Xin Deng, Jilong Li, Jianlin Cheng
Software Mentions: 2
Published: over 12 years ago

10.1186/1472-6807-6-24

Cited by: 26
Author(s): Rudra P. Saha, Pinak Chakrabarti
Software Mentions: 2
Published: over 20 years ago

10.1016/j.jpsychores.2019.01.011

A longitudinal study on the effects of psychological stress on proteinuria in childhood steroid-sensitive nephrotic syndrome
Cited by: 10
Author(s): Lianne Bakkum, A.M. Willemen, Lydia Zoetebier, Antonia H. Bouts
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0132868

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling
Cited by: 23
Author(s): Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Joke Reumers
Software Mentions: 2
Published: about 11 years ago

10.1098/rsif.2014.1111

Micro- and nano-structural details of a spider's filter for substrate vibrations: relevance for low-frequency signal transmission
Cited by: 32
Author(s): Maxim Erko, Osnat Younes‐Metzler, Alexander Rack, Paul Zaslansky, Seth L. Young, Garrett Milliron, Marius Chyasnavichyus, Friedrich G. Barth, Peter Fratzl, Vladimir V. Tsukruk, Igor Zlotnikov, Yael Politi
Software Mentions: 2
Published: over 11 years ago

10.1186/gb-2014-15-1-r18

PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis
Cited by: 85
Author(s): Beibei Chen, Jonghyun Yun, Min Soo Kim, Joshua T. Mendell, Yang Xie
Software Mentions: 2
Published: over 12 years ago

10.3389/fphys.2018.00625

Immunomodulatory Effects of Dietary Seaweeds in LPS Challenged Atlantic Salmon Salmo salar as Determined by Deep RNA Sequencing of the Head Kidney Transcriptome
Cited by: 19
Author(s): Arjan P. Palstra, J. Kals, A. Blanco Garcia, Ron P. Dirks, M. Poelman
Software Mentions: 2
Published: over 8 years ago

10.1186/bcr3586

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer
Cited by: 15
Author(s): Xiangqian Guo, Shirley Zhu, Alayne Brunner, Matt van de Rijn, Robert B. West
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2013-14-9-r102

Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape
Cited by: 276
Author(s): Kenneth Day, Lindsay L. Waite, Anna Thalacker‐Mercer, Andrew B. West, Marcas M. Bamman, James D. Brooks, R Myers, Devin Absher
Software Mentions: 2
Published: over 13 years ago

10.1155/2008/892927

Bayesian Mixture Model Analysis for Detecting Differentially Expressed Genes
Cited by: 4
Author(s): Zhenyu Jia, Shizhong Xu
Software Mentions: 2
Published: over 18 years ago

10.1155/2012/831460

SNP Discovery through Next-Generation Sequencing and Its Applications
Cited by: 211
Author(s): Santosh Kumar, Travis Banks, Sylvie Cloutier
Software Mentions: 2
Published: almost 14 years ago

10.1186/gb-2014-15-3-r42

A comprehensive evaluation of assembly scaffolding tools
Cited by: 155
Author(s): Martin Hunt, Chris Newbold, Matthew Berriman, Thomas D. Otto
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0202022

Rare gene deletions in genetic generalized and Rolandic epilepsies
Cited by: 4
Author(s): Kamel Jabbari, Dheeraj Reddy Bobbili, Dennis Lal, Eva M. Reinthaler, Julian Schubert, Stefan Wolking, Vishal Sinha, Susanne Motameny, Holger Thiele, Amit Kawalia, Janine Altmüller, Mohammad Reza Toliat, Robert Kraaij, Jeroen van Rooij, André G. Uitterlinden, M. Arfan Ikram, Federico Zara, Anna‐Elina Lehesjoki, Roland Krause, Fritz Zimprich, Thomas Sander, Bernd A. Neubauer, Patrick May, Holger Lerche, Peter Nürnberg
Software Mentions: 2
Published: about 8 years ago

10.1186/2041-2223-5-9

Validation of high throughput sequencing and microbial forensics applications
Cited by: 56
Author(s): Bruce Budowle, Nancy Connell, Anna Bielecka-Oder, Rita R. Colwell, Cindi R. Corbett, Jacqueline Fletcher, Mats Forsman, Dana R Kadavy, Alemka Markotić, Stephen Morse, Randall S. Murch, Antti Sajantila, Sarah E. Schmedes, Krista Ternus, Stephen D. Turner, Samuel S. Minot
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2210-8-16

Pharmacokinetics and transcriptional effects of the anti-salmon lice drug emamectin benzoate in Atlantic salmon (Salmo salar L.)
Cited by: 23
Author(s): Pål A. Olsvik, Kai Kristoffer Lie, Eva Mykkeltvedt, Ole Bent Samuelsen, Kjell Petersen, Anne-Kristin Stavrum, Bjørn Tore Lunestad
Software Mentions: 2
Published: about 18 years ago

10.1093/database/baw022

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis
Cited by: 56
Author(s): Vahan Simonyan, Konstantin Chumakov, Hayley Dingerdissen, William J. Faison, Scott Goldweber, Anton Golikov, Naila Gulzar, Konstantinos Karagiannis, Phuc Vinh Nguyen Lam, Thomas Maudru, Olesja Muravitskaja, Ekaterina Osipova, Yang Pan, Alexey Pschenichnov, Alexandre Rostovtsev, Luis V. Santana‐Quintero, Krista Smith, Elaine E. Thompson, Valery Tkachenko, John Torcivia-Rodriguez, Alin Voskanian, Qing Wan, Jing Wang, Tsung-Jung Wu, Carolyn A. Wilson, Raja Mazumder
Software Mentions: 2
Published: over 10 years ago

10.1093/database/baw137

<i>Cryptosporidium hominis</i>gene catalog: a resource for the selection of novel<i>Cryptosporidium</i>vaccine candidates
Cited by: 11
Author(s): Olukemi O. Ifeonu, Raphael Simon, Sharon M. Tennant, Abhineet S. Sheoran, Maria C. Daly, Victor Felix, Jessica C. Kissinger, Giovanni Widmer, Fred Levine, Saul Tzipori, Joana C. Silva
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0013865

MEG Responses to the Perception of Global Structure within Glass Patterns
Cited by: 12
Author(s): Jennifer B. Swettenham, Stephen J. Anderson, Ngoc Jade Thai
Software Mentions: 2
Published: almost 16 years ago

10.1093/database/baaa079

Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes
Cited by: 2
Author(s): Hong Cui, Limin Zhang, Bruce A. Ford, Hsin Liang Cheng, James Macklin, Anton A. Reznicek, Julian R. Starr
Software Mentions: 2
Published: over 6 years ago

10.3390/plants10020250

Microbe Finder (MiFi®): Implementation of an Interactive Pathogen Detection Tool in Metagenomic Sequence Data
Cited by: 13
Author(s): Andrés S. Espíndola, Kitty F. Cardwell
Software Mentions: 2
Published: over 5 years ago

10.1186/gb-2013-14-6-r54

The plasticity of the grapevine berry transcriptome
Cited by: 148
Author(s): Silvia Dal Santo, Giovanni Battista Tornielli, Sara Zenoni, Marianna Fasoli, Lorenzo Farina, Andrea Anesi, Flavia Guzzo, Massimo Delledonne, Mario Pezzotti
Software Mentions: 2
Published: over 13 years ago

10.2196/mental.4984

Mental Health Smartphone Apps: Review and Evidence-Based Recommendations for Future Developments
Cited by: 619
Author(s): David Bakker, Nikolaos Kazantzis, Debra Rickwood, Nikki Rickard
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1005944

MUMmer4: A fast and versatile genome alignment system
Cited by: 1,197
Author(s): Guillaume Marçais, Arthur L. Delcher, Adam M. Phillippy, Rachel Coston, Steven L. Salzberg, Aleksey V. Zimin
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2014.00533

A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation
Cited by: 43
Author(s): Christopher I. Cazzonelli, Nazia Nisar, Andrea C. Roberts, Kevin Murray, Justin O. Borevitz, Barry J. Pogson
Software Mentions: 2
Published: almost 12 years ago

10.3390/ijerph10104836

Estimating the Public Health Impact of Setting Targets at the European Level for the Reduction of Zoonotic Salmonella in Certain Poultry Populations
Cited by: 15
Author(s): Winy Messens, Luis Vivas-Alegre, Saghir Bashir, Giusi Amore, Pablo Romero-Barrios, Marta Hugas
Software Mentions: 2
Published: almost 13 years ago

10.1186/gb-2012-13-6-r56

Toward almost closed genomes with GapFiller
Cited by: 915
Author(s): Marten Boetzer, Walter Pirovano
Software Mentions: 2
Published: over 14 years ago

10.1186/gb-2012-13-2-r11

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
Cited by: 54
Author(s): Najeeb U. Siddiqui, Xiao Li, Hua Luo, Angelo Karaiskakis, Huayun Hou, Thomas Kislinger, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0052249

FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
Cited by: 406
Author(s): Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guang‐Rui Qian, Jinhui Chen, Shilin Chen
Software Mentions: 2
Published: over 13 years ago

10.3390/ijerph15091941

A Hybrid Forecasting Approach to Air Quality Time Series Based on Endpoint Condition and Combined Forecasting Model
Cited by: 27
Author(s): Jiaming Zhu, Peng Wu, Huayou Chen, Ligang Zhou
Software Mentions: 2
Published: about 8 years ago

10.3390/ijerph16245102

PM2.5 Pollution: Health and Economic Effect Assessment Based on a Recursive Dynamic Computable General Equilibrium Model
Cited by: 6
Author(s): Keyao Chen, Guizhi Wang, Lingyan Wu, Jibo Chen, Shuai Yuan, Qi Liu, Xiaodong Liu
Software Mentions: 2
Published: almost 7 years ago

10.3390/diagnostics10121077

The Activation of Prothrombin Seems to Play an Earlier Role than the Complement System in the Progression of Colorectal Cancer: A Mass Spectrometry Evaluation
Cited by: 6
Author(s): Maider Beitia, Paolo Romano, Gorka Larrinaga, Jon Danel Solano-Iturri, Annalisa Salis, Gianluca Damonte, Marco Bruzzone, Marcello Ceppi, Aldo Profumo
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijerph17030933

Comparative Analysis of the Reproduction Accuracy of Main Methods for Finding the Mandible Position in the Centric Relation Using Digital Research Method. Comparison between Analog-to-Digital and Digital Methods: A Preliminary Report
Cited by: 3
Author(s): А А Stafeev, A N Ryakhovsky, P Petrov, Sergey Chikunov, A V Khizhuk, Marina Bykova, Nataliya Vuraki
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/8884229

Next Generation Exome Sequencing of Pediatric Asthma Identifies Rare and Novel Variants in Candidate Genes
Cited by: 4
Author(s): Neda M. Bogari, Amr Amin, Husni H Rayes, Ahmed Abdelmotelb, Mohiuddin M. Taher, Faisal A. Al‐Allaf, Abdellatif Bouazzaoui, Luke O’Gorman, John W. Holloway
Software Mentions: 2
Published: over 5 years ago

10.1186/gb-2011-12-8-r77

Integrated miRNA and mRNA expression profiling of mouse mammary tumor models identifies miRNA signatures associated with mammary tumor lineage
Cited by: 66
Author(s): Min Zhu, Ming Yi, Chang Hee Kim, Chu‐Xia Deng, Yang Li, Daniel Medina, Robert M. Stephens, Jeffrey E. Green
Software Mentions: 2
Published: over 15 years ago

10.3390/ijerph17155576

Dissociable Effects of Executive Load on Perceived Exertion and Emotional Valence during Submaximal Cycling
Cited by: 5
Author(s): Vicente Ávila-Gandía, Francisco Alarcón, José C. Perales, Francisco Javier López-Román, Antonio J. Luque-Rubia, David Cárdenas Vélez
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0168585

The Effect of Random Error on Diagnostic Accuracy Illustrated with the Anthropometric Diagnosis of Malnutrition
Cited by: 31
Author(s): Emmanuel Grellety, Michael Golden
Software Mentions: 2
Published: over 9 years ago

10.1242/dmm.025239

Genomic profiling of murine mammary tumors identifies potential personalized drug targets for p53 deficient mammary cancers
Cited by: 27
Author(s): Adam D. Pfefferle, Yash N. Agrawal, Daniel C. Koboldt, Krishna L. Kanchi, Jason I. Herschkowitz, Elaine R. Mardis, Jeffrey M. Rosen, Charles M. Perou
Software Mentions: 2
Published: over 10 years ago

10.1186/s13104-016-1847-3

SeqTools: visual tools for manual analysis of sequence alignments
Cited by: 22
Author(s): Gemma Barson, Ed Griffiths
Software Mentions: 2
Published: over 10 years ago

10.1186/gb-2011-12-8-r72

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
Cited by: 658
Author(s): Daehwan Kim, Steven L. Salzberg
Software Mentions: 2
Published: over 15 years ago

10.7717/peerj.1784

A<i>de novo</i>transcriptome of the Malpighian tubules in non-blood-fed and blood-fed Asian tiger mosquitoes<i>Aedes albopictus</i>: insights into diuresis, detoxification, and blood meal processing
Cited by: 45
Author(s): Carlos J. Esquivel, Bryan J. Cassone, Peter M. Piermarini
Software Mentions: 2
Published: over 10 years ago

10.1186/gb-2011-12-6-r55

Sniper: improved SNP discovery by multiply mapping deep sequenced reads
Cited by: 28
Author(s): Daniel F. Simola, Junhyong Kim
Software Mentions: 2
Published: over 15 years ago

10.1186/gb-2010-11-11-r115

Constructing a fish metabolic network model
Cited by: 42
Author(s): Shuzhao Li, Alex Pozhitkov, Rachel A. Ryan, C. Steve Manning, Nancy J. Brown‐Peterson, Marius Brouwer
Software Mentions: 2
Published: over 16 years ago

10.3390/ijerph18179228

Evidence for the Crash Avoidance Effectiveness of Intelligent and Connected Vehicle Technologies
Cited by: 9
Author(s): Hong Tan, Fuquan Zhao, Han Hao, Zongwei Liu
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1002830

Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density
Cited by: 37
Author(s): Claudia Coronnello, Ryan J. Hartmaier, Arshi Arora, Luai Huleihel, Kusum Pandit, Abha Bais, Michael Butterworth, Naftali Kaminski, Gary D. Stormo, Steffi Oesterreich, Panayiotis V. Benos
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0006693

A Core MYC Gene Expression Signature Is Prominent in Basal-Like Breast Cancer but Only Partially Overlaps the Core Serum Response
Cited by: 129
Author(s): Sanjay Chandriani, Eirik Frengen, Victoria H. Cowling, Sarah A. Pendergrass, Charles M. Perou, Michael L. Whitfield, Michael Cole
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0083762

The Effect of Gestational Age on Angiogenic Gene Expression in the Rat Placenta
Cited by: 13
Author(s): Kanchan Vaswani, Melissa Hum, Hsiu‐Wen Chan, Jennifer Ryan, Ryan J Wood-Bradley, Marloes Dekker Nitert, Murray D. Mitchell, James A. Armitage, Gregory E. Rice
Software Mentions: 2
Published: over 12 years ago

10.3389/fpsyg.2018.00657

Physiological Response to Facial Expressions in Peripersonal Space Determines Interpersonal Distance in a Social Interaction Context
Cited by: 55
Author(s): Alice Cartaud, Gennaro Ruggiero, Laurent Ott, Tina Iachini, C. Yann
Software Mentions: 2
Published: over 8 years ago

10.3390/ph4010007

GPCR Conformations: Implications for Rational Drug Design
Cited by: 16
Author(s): Abby L. Parrill, Debra L. Bautista
Software Mentions: 2
Published: over 15 years ago

10.1186/s13007-017-0233-z

Hyperspectral image analysis techniques for the detection and classification of the early onset of plant disease and stress
Cited by: 323
Author(s): Amy Lowe, Nicola Harrison, A. P. French
Software Mentions: 2
Published: almost 9 years ago

10.1136/jitc-2020-001717

Differential and longitudinal immune gene patterns associated with reprogrammed microenvironment and viral mimicry in response to neoadjuvant radiotherapy in rectal cancer
Cited by: 14
Author(s): Anna Wilkins, Elisa Fontana, Gift Nyamundanda, Chanthirika Ragulan, Yatish Patil, David Mansfield, Jennifer Kingston, Fiona Errington-Mais, Daniel Bottomley, Katharina von Loga, Hannah Bye, Paul Carter, Emma Tinkler-Hundal, Arish Noshirwani, Jessica A. Downs, Magnus T. Dillon, Sandra Demaria, David Sebag‐Montefiore, Kevin Harrington, Nicholas P. West, Alan Melcher, Anguraj Sadanandam
Software Mentions: 2
Published: over 5 years ago

10.1136/jitc-2020-002223

Genomic profiling of advanced cervical cancer to predict response to programmed death-1 inhibitor combination therapy: a secondary analysis of the CLAP trial
Cited by: 21
Author(s): Xin Huang, Minke He, Hongyu Peng, Chongjie Tong, Zhimin Liu, Xiaolong Zhang, Yang Shao, Dongqin Zhu, Junli Zhang, Jiani C. Yin, Fan Yang, C. Y. Lan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0011310

The Gene Expression Profile in the Synovium as a Predictor of the Clinical Response to Infliximab Treatment in Rheumatoid Arthritis
Cited by: 84
Author(s): Johan Lindberg, Carla A. Wijbrandts, Lisa G. M. van Baarsen, Gustavo A. Nader, Lars Klareskog, Anca I. Catrina, Rogier M. Thurlings, Margriet J. Vervoordeldonk, Joakim Lundeberg, Paul P. Tak
Software Mentions: 2
Published: about 16 years ago

10.26508/lsa.201800084

Role of <i>Cnot6l</i> in maternal mRNA turnover
Cited by: 37
Author(s): Filip Horvat, Helena Fulka, Radek Jankele, Radek Malı́k, Jun Ma, Katerina Solcova, Radislav Sedláček, Kristian Vlahoviček, Richard M. Schultz, Petr Svoboda
Software Mentions: 2
Published: about 8 years ago

10.1177/1753495X20929502

Provision of acute medicine services for pregnant women in UK hospitals: Data from the Society for Acute Medicine Benchmarking Audit 2019
Cited by: 1
Author(s): Catherine Atkin, Paarul Prinja, Anita Banerjee, Mark Holland, Daniel Lasserson
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0006971

Genomic Analysis Suggests that mRNA Destabilization by the Microprocessor Is Specialized for the Auto-Regulation of Dgcr8
Cited by: 45
Author(s): Archana Shenoy, Robert Blelloch
Software Mentions: 2
Published: about 17 years ago

10.1186/1479-5876-6-79

Aurora kinase inhibitors synergize with paclitaxel to induce apoptosis in ovarian cancer cells
Cited by: 61
Author(s): Christopher D. Scharer, Noelani Laycock, Adeboye O. Osunkoya, Sanjay Logani, John F. McDonald, Benedict B. Benigno, Carlos S. Moreno
Software Mentions: 2
Published: almost 18 years ago

10.15252/embr.201540476

Abo1, a conserved bromodomain <scp>AAA</scp> ‐ <scp>ATP</scp> ase, maintains global nucleosome occupancy and organisation
Cited by: 20
Author(s): Csenge Gal, Heather E. Murton, Lakxmi Subramanian, Alex J. Whale, Karen Moore, Konrad Paszkiewicz, Sandra Codlin, Jürg Bähler, Kevin M. Creamer, Janet F. Partridge, Robin C. Allshire, Nicholas A. Kent, Simon K. Whitehall
Software Mentions: 2
Published: almost 11 years ago

10.1186/bcr3403

Embryonic mammary signature subsets are activated in Brca1 -/- and basal-like breast cancers
Cited by: 47
Author(s): Marketa Zvelebil, Erik Oliemuller, Qiong Gao, Olivia Wansbury, Alan Mackay, Howard Kendrick, Matthew J. Smalley, Jorge S. Reis‐Filho, Beatrice A. Howard
Software Mentions: 2
Published: over 13 years ago

10.17179/excli2017-491

miR-494 protects pancreatic β-cell function by targeting PTEN in gestational diabetes mellitus.
Cited by: 19
Author(s): Yiping He, Jie Bai, Ping Liu, Jianxin Dong, Yajuan Tang, Jiayi Zhou, Ping Han, Jun Xing, Yan Chen, Xiaozhou Yu
Software Mentions: 2
Published: over 9 years ago

10.3389/fpsyg.2015.01232

Microtiming in Swing and Funk affects the body movement behavior of music expert listeners
Cited by: 34
Author(s): Lorenz Kilchenmann, Olivier Senn
Software Mentions: 2
Published: about 11 years ago

10.1002/2017EF000744

Biogeophysical Impacts of Land-Use Change on Climate Extremes in Low-Emission Scenarios: Results From HAPPI-Land
Cited by: 29
Author(s): Annette L. Hirsch, Benoît P. Guillod, Sonia I. Seneviratne, Urs Beyerle, Lena Boysen, Victor Brovkin, Edouard L. Davin, Jonathan C. Doelman, Hyungjun Kim, Dann Mitchell, Tomoko Nitta, Hideo Shiogama, Sarah Sparrow, Elke Stehfest, Detlef P. van Vuuren, Simon Wilson
Software Mentions: 2
Published: over 8 years ago

10.1038/s41377-020-00367-8

Electromagnetic chirality: from fundamentals to nontraditional chiroptical phenomena
Cited by: 192
Author(s): Jungho Mun, Minkyung Kim, Younghwan Yang, Trevon Badloe, Jincheng Ni, Yang Chen, Cheng‐Wei Qiu, Junsuk Rho
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2017.02136

Ten Years of Landscape Genomics: Challenges and Opportunities
Cited by: 54
Author(s): Yong Li, Xuexia Zhang, Run-Li Mao, Jie Yang, Cai-Yun Miao, Zhuo Li, Ying‐Xiong Qiu
Software Mentions: 2
Published: almost 9 years ago

10.1002/ece3.2138

Microhabitat selection in the common lizard: implications of biotic interactions, age, sex, local processes, and model transferability among populations
Cited by: 15
Author(s): Miguel Peñalver‐Alcázar, Pedro Aragón, Merel C. Breedveld, Patrick S. Fitze
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2020.610307

Boron: More Than an Essential Element for Land Plants?
Cited by: 30
Author(s): Greice Leal Pereira, João Antônio Siqueira, Willian Batista‐Silva, Flávio Barcellos Cardoso, Adriano Nunes‐Nesi, Wagner L. Araújo
Software Mentions: 2
Published: over 5 years ago

10.1111/ppl.12103

Long‐ and short‐distance signaling in the regulation of lateral plant growth
Cited by: 23
Author(s): Klaus Brackmann, Thomas Greb
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pcbi.1002365

Novel Approach to Meta-Analysis of Microarray Datasets Reveals Muscle Remodeling-related Drug Targets and Biomarkers in Duchenne Muscular Dystrophy
Cited by: 58
Author(s): Ekaterina Kotelnikova, Maria Shkrob, Mikhail A. Pyatnitskiy, Alessandra Ferlini, Nikolai Daraselia
Software Mentions: 2
Published: over 14 years ago

10.1002/ece3.7289

Temperature but not ocean acidification affects energy metabolism and enzyme activities in the blue mussel, <i>Mytilus edulis</i>
Cited by: 17
Author(s): Omera B. Matoo, Gisela Lannig, Christian Bock, Inna M. Sokolova
Software Mentions: 2
Published: over 5 years ago

10.3389/fpsyg.2020.570761

Modeling Evaluations of Low-Level Sounds in Everyday Situations Using Linear Machine Learning for Variable Selection
Cited by: 2
Author(s): Siegbert Versümer, Jochen Steffens, Patrick Blättermann, Jörg Becker-Schweitzer
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0000945

Transcriptional Program Induced by Wnt Protein in Human Fibroblasts Suggests Mechanisms for Cell Cooperativity in Defining Tissue Microenvironments
Cited by: 76
Author(s): Zach Klapholz-Brown, Graham G. Walmsley, Ysbrand Nusse, Roel Nusse, Patrick O. Brown
Software Mentions: 2
Published: almost 19 years ago

10.3389/fpls.2016.00567

Trait Specific Expression Profiling of Salt Stress Responsive Genes in Diverse Rice Genotypes as Determined by Modified Significance Analysis of Microarrays
Cited by: 20
Author(s): Mohammad Rashed Hossain, George W. Bassel, Jeremy Pritchard, Garima P Sharma, B. V. Ford‐Lloyd
Software Mentions: 2
Published: over 10 years ago

10.1002/ece3.370

Gene expression divergence and nucleotide differentiation between males of different color morphs and mating strategies in the ruff
Cited by: 20
Author(s): Robert Ekblom, Lindsay Farrell, David B. Lank, Terry Burke
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0165543

Identification of Genes Discriminating Multiple Sclerosis Patients from Controls by Adapting a Pathway Analysis Method
Cited by: 4
Author(s): Lei Zhang, Linlin Wang, Pu Tian, Suyan Tian
Software Mentions: 2
Published: almost 10 years ago

10.1002/ece3.6097

Geographic patterns of insect diversity across China's nature reserves: The roles of niche conservatism and range overlapping
Cited by: 8
Author(s): Yueming Lyu, Xiangping Wang, Jing Luo
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2229-10-14

SoyDB: a knowledge database of soybean transcription factors
Cited by: 105
Author(s): Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry T. Nguyen, Dong Xu, Gary Stacey, Jianlin Cheng
Software Mentions: 2
Published: over 16 years ago

10.3389/fpsyg.2021.707809

The Effectiveness of Facial Expression Recognition in Detecting Emotional Responses to Sound Interventions in Older Adults With Dementia
Cited by: 4
Author(s): Ying Liu, Zixuan Wang, Ge Yu
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0040399

Dynamic Changes in Ezh2 Gene Occupancy Underlie Its Involvement in Neural Stem Cell Self-Renewal and Differentiation towards Oligodendrocytes
Cited by: 56
Author(s): Falak Sher, Erik Boddeke, Marta Olah, Sjef Copray
Software Mentions: 2
Published: about 14 years ago

10.7554/eLife.20640

Modularity and determinants of a (bi-)polarization control system from free-living and obligate intracellular bacteria
Cited by: 26
Author(s): Matthieu Bergé, Sébastien Campagne, Johann Mignolet, Séamus Holden, Laurence Théraulaz, Suliana Manley, Frédéric H.‐T. Allain, Patrick H. Viollier
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pcbi.1001028

A Scalable Approach for Discovering Conserved Active Subnetworks across Species
Cited by: 18
Author(s): Raamesh Deshpande, Shikha Sharma, Catherine M. Verfaillie, Wei Shou Hu, Chad L. Myers
Software Mentions: 2
Published: almost 16 years ago

10.3389/fpsyg.2021.626118

Interindividual Variation Refuses to Go Away: A Bayesian Computer Model of Language Change in Communicative Networks
Cited by: 3
Author(s): Mathilde Josserand, Marc Allassonnière-Tang, François Pellegrino, Dan Dediu
Software Mentions: 2
Published: about 5 years ago

10.3390/nu10091255

Lactobacillus acidophilus DDS-1 Modulates the Gut Microbiota and Improves Metabolic Profiles in Aging Mice
Cited by: 57
Author(s): Ravichandra Vemuri, Rajaraman Eri, Rohit Gundamaraju, Shakuntla Gondalia, Avinash V. Karpe, David J. Beale, Christopher Martoni, Rajaraman Eri
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0097842

Impact of Gene Dosage on Gene Expression, Biological Processes and Survival in Cervical Cancer: A Genome-Wide Follow-Up Study
Cited by: 40
Author(s): Ingrid Medina-Martínez, Valeria Barrón, Edgar Román-Bassaure, Eligia Juárez-Torres, Mariano Guardado-Estrada, Ana Espinosa, Miriam Bermúdez, Fernando Fernández, Carlos Venegas-Vega, Lorena Orozco, Edgar Zenteno, Susana Kofman, Jaime Berumen
Software Mentions: 2
Published: over 12 years ago