Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Rmpi

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Rmpi

Interface (Wrapper) to MPI (Message-Passing Interface)
29 versions
Latest release: over 1 year ago
31 dependent packages
3,363 downloads last month

Papers Mentioning Rmpi 20

Software engineering principles to improve quality and performance of R software
Cited by: 0
Author(s): Seth Russell, Tellen D. Bennett, Debashis Ghosh
Software Mentions: 29
Published: almost 6 years ago

10.3897/BDJ.4.e8357

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
Cited by: 12
Author(s): Constantinos Varsos, Theodore Patkos, Anastasis Oulas, Christina Pavloudi, Alexandros Gougousis, Umer Zeeshan Ijaz, Irene Filiopoulou, Nikolaos Pattakos, E. Vanden Berghe, Antonio Fernàndez-Guerra, Sarah Faulwetter, Eva Chatzinikolaou, Evangelos Pafilis, Chryssoula Bekiari, Martin Doerr, Christos Arvanitidis
Software Mentions: 12
Published: about 8 years ago

10.1186/1471-2105-13-252

QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data
Cited by: 17
Author(s): Greg Finak, Wenxin Jiang, Jorge Pardo, Adam Asare, Raphaël Gottardo
Software Mentions: 8
Published: about 12 years ago

10.1186/1471-2105-8-328

GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest
Cited by: 169
Author(s): Ramón Dı́az-Uriarte
Software Mentions: 6
Published: about 17 years ago

10.1186/gm509

Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine
Cited by: 5
Author(s): Daniel Bottomly, Peter Ryabinin, Jeffrey W. Tyner, Bill H. Chang, Marc Loriaux, Brian J. Druker, Shannon K. McWeeney, Beth Wilmot
Software Mentions: 6
Published: almost 12 years ago

10.1186/1471-2105-11-380

R-Gada: a fast and flexible pipeline for copy number analysis in association studies
Cited by: 48
Author(s): Roger Piqué-Regi, Alejandro Cáceres, Juan R. González
Software Mentions: 6
Published: over 14 years ago

10.1186/1471-2105-7-3

Gene selection and classification of microarray data using random forest
Cited by: 2,230
Author(s): Ramón Dı́az-Uriarte, Sara Álvarez de Andrés
Software Mentions: 6
Published: almost 19 years ago

10.1186/1471-2105-9-558

SPRINT: A new parallel framework for R
Cited by: 33
Author(s): Jon Hill, Matthew Hambley, Thorsten Forster, Muriel Mewissen, Terence Sloan, Florian Scharinger, Arthur Trew, Peter Ghazal
Software Mentions: 5
Published: almost 16 years ago

10.1186/1471-2105-9-30

SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data
Cited by: 10
Author(s): Ramón Díaz‐Uriarte
Software Mentions: 4
Published: almost 17 years ago

10.1186/1471-2105-9-289

Stability of gene contributions and identification of outliers in multivariate analysis of microarray data
Cited by: 18
Author(s): Florent Baty, Daniel Jaeger, Frank Preiswerk, M. Schumacher, Martin Brutsche
Software Mentions: 4
Published: over 16 years ago

10.1002/ece3.12

Ungulate preference for burned patches reveals strength of fire-grazing interaction
Cited by: 216
Author(s): Brady W. Allred, Samuel D. Fuhlendorf, David M. Engle, R. Dwayne Elmore
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0070651

ParallelStructure: A R Package to Distribute Parallel Runs of the Population Genetics Program STRUCTURE on Multi-Core Computers
Cited by: 148
Author(s): François Besnier, Kevin A. Glover
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2105-11-217

ParallABEL: an R library for generalized parallelization of genome-wide association studies
Cited by: 7
Author(s): Unitsa Sangket, Surakameth Mahasirimongkol, Wasun Chantratita, Pichaya Tandayya, Yurii S. Aulchenko
Software Mentions: 3
Published: over 14 years ago

10.1186/1471-2105-9-241

A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model
Cited by: 62
Author(s): Richard S. Judson, Fathi Elloumi, R. Woodrow Setzer, Zhen Li, Imran Shah
Software Mentions: 2
Published: over 16 years ago

10.1016/j.compenvurbsys.2018.01.004

Identifying residential neighbourhood types from settlement points in a machine learning approach
Cited by: 33
Author(s): Warren C. Jochem, Tomas J. Bird, Andrew J. Tatem
Software Mentions: 2
Published: over 6 years ago

10.1186/s12859-014-0351-9

Optimising parallel R correlation matrix calculations on gene expression data using MapReduce
Cited by: 20
Author(s): Shicai Wang, Ioannis Pandis, David Johnson, Ibrahim Emam, Florian Guitton, Axel Oehmichen, Yike Guo
Software Mentions: 2
Published: about 10 years ago

10.3389/fphys.2017.00616

Optimization of an In silico Cardiac Cell Model for Proarrhythmia Risk Assessment
Cited by: 117
Author(s): Sara Dutta, Kelly C. Chang, Kylie A. Beattie, Jiansong Sheng, Phu N. Tran, Wendy Wu, Min Wu, David G. Strauss, Thomas Colatsky, Zhihua Li
Software Mentions: 2
Published: over 7 years ago