Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Recon

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Recon

Computational Tools for Economics
3 versions
Latest release: over 5 years ago
132 downloads last month

Papers Mentioning Recon 114

On a Method For Reconstructing Computed Tomography Datasets from an Unstable Source
Cited by: 1
Author(s): Nicholas Stull, Josh McCumber, Lawrence J. D’Aries, Michelle A. Espy, C. Gautier, James F. Hunter
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo10010016

Genome-Scale Metabolic Modeling with Protein Expressions of Normal and Cancerous Colorectal Tissues for Oncogene Inference
Cited by: 14
Author(s): Feng‐Sheng Wang, Wu‐Hsiung Wu, Wei-Shiang Hsiu, Yanjun Liu, Kuan-Wei Chuang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pcbi.1006733

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
Cited by: 64
Author(s): Chiara Damiani, Davide Maspero, Marzia Di Filippo, Riccardo Colombo, Dario Pescini, Alex Graudenzi, Hans V. Westerhoff, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.191241

Oncogene inference optimization using constraint-based modelling incorporated with protein expression in normal and tumour tissues
Cited by: 9
Author(s): Wu‐Hsiung Wu, Fan Yu Li, Yi Chen Shu, Jin Mei Lai, Peter Mu Hsin Chang, Chi Ying F. Huang, Feng Sheng Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/srep19771

Generation of 2,000 breast cancer metabolic landscapes reveals a poor prognosis group with active serotonin production
Cited by: 31
Author(s): Vytautas Leoncikas, Huihai Wu, Lara Ward, Andrzej M. Kierzek, Nick Plant
Software Mentions: 1
Published: almost 9 years ago

10.3390/metabo10050184

The Key Role of Purine Metabolism in the Folate-Dependent Phenotype of Autism Spectrum Disorders: An In Silico Analysis
Cited by: 7
Author(s): Jan Géryk, Daniel Krsička, Markéta Vlčková, Markéta Havlovičová, Milan Maçek, Radka Kremlíková Pourová
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo4041034

Computational Strategies for a System-Level Understanding of Metabolism
Cited by: 48
Author(s): Paolo Cazzaniga, Chiara Damiani, Daniela Besozzi, Riccardo Colombo, Marco S. Nobile, Daniela Gaglio, Dario Pescini, Sara Molinari, Giancarlo Mauri, Lilia Alberghina, Marco Vanoni
Software Mentions: 1
Published: almost 10 years ago

10.2196/19100

Design and Implementation of a Multilevel Intervention to Reduce Hepatitis C Transmission Among Men Who Have Sex With Men in Amsterdam: Co-Creation and Usability Study
Cited by: 4
Author(s): Tamara Prinsenberg, Paul Zantkuijl, Wim Zuilhof, Udi Davidovich, Janke Schinkel, Maria Prins, Marc van der Valk
Software Mentions: 1
Published: about 4 years ago

10.3390/metabo8030051

Mind the Gap: Mapping Mass Spectral Databases in Genome-Scale Metabolic Networks Reveals Poorly Covered Areas
Cited by: 50
Author(s): Clément Frainay, Emma L. Schymanski, Steffen Neumann, Benjamin Merlet, Reza M. Salek, Fabien Jourdan, Óscar Yanes
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1009209

A multi-approach and multi-scale platform to model CD4+ T cells responding to infections
Cited by: 10
Author(s): Kenneth Y. Wertheim, Bhanwar Lal Puniya, Alyssa La Fleur, Ab Rauf Shah, Matteo Barberis, Tomáš Helikar
Software Mentions: 1
Published: over 3 years ago

10.3390/metabo3040946

Counting and Correcting Thermodynamically Infeasible Flux Cycles in Genome-Scale Metabolic Networks
Cited by: 40
Author(s): Daniele De Martino, Fabrizio Capuani, Matteo Mori, Andrea De Martino, Enzo Marinari
Software Mentions: 1
Published: about 11 years ago

10.1038/srep30977

STAT5 is a key transcription factor for IL-3-mediated inhibition of RANKL-induced osteoclastogenesis
Cited by: 24
Author(s): Jongwon Lee, Semun Seong, Jung Ha Kim, Kabsun Kim, In-Young Kim, Byung‐Chul Jeong, Kwang Il Nam, Kyung Keun Kim, Lothar Hennighausen, Nacksung Kim
Software Mentions: 1
Published: over 8 years ago

10.7243/2052-6962-2-2

In vivo dielectric measuring instrument using picosecond pulse for detection of oral cancer
Cited by: 1
Author(s): Olufoladare G. Olorunsola, Steven H. Kim, Chang Rs, Yuo-Chen Kuo, Steven W. Hetts, Alex Heller, Rishi Kant, Maythem Saeed, William H. Fissell, Shuvo Roy, Mark W. Wilson
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0117131

Organization of Enzyme Concentration across the Metabolic Network in Cancer Cells
Cited by: 32
Author(s): Neel S. Madhukar, Marc O. Warmoes, Jason W. Locasale
Software Mentions: 1
Published: almost 10 years ago