cran: RPMM | Projects | Ecosyste.ms: Papers

10.1186/s13059-014-0579-8

Pancancer analysis of DNA methylation-driven genes using MethylMix
Cited by: 102
Author(s): Olivier Gevaert, Robert Tibshirani, Sylvia K. Plevritis
Software Mentions: 5
Published: almost 10 years ago

Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with lung macrophages in cystic fibrosis
Cited by: 26
Author(s): Youdinghuan Chen, David A. Armstrong, Lucas A. Salas, Haley F. Hazlett, Amanda B. Nymon, John A. Dessaint, Daniel Aridgides, Diane Mellinger, Xiaoying Li, Brock C. Christensen, Alix Ashare
Software Mentions: 5
Published: about 6 years ago

10.3389/fmolb.2021.648012

Artificial Intelligence in Epigenetic Studies: Shedding Light on Rare Diseases
Cited by: 10
Author(s): Sandra Brasil, Cátia J. Neves, Tatiana Rijoff, Marta Falcão, Gonçalo Valadão, Paula A. Videira, Vanessa Ferreira
Software Mentions: 4
Published: over 3 years ago

10.1186/s13148-021-01156-9

DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker
Cited by: 6
Author(s): Nasim Azizgolshani, Curtis L. Petersen, Youdinghuan Chen, Joshua Levy, Lucas A. Salas, Laurent Praly, Lananh N. Nguyen, Brock C. Christensen
Software Mentions: 4
Published: about 3 years ago

10.18632/oncotarget.6503

Towards understanding the breast cancer epigenome: a comparison of genome-wide DNA methylation and gene expression data
Cited by: 16
Author(s): Sandeep K. Singhal, Nawaid Usmani, Stefan Michiels, Otto Metzger‐Filho, Kamal S. Saini, Olga Kovalchuk, Matthew Parliament
Software Mentions: 3
Published: about 9 years ago

10.1186/s12920-019-0501-z

Genes CEP55, FOXD3, FOXF2, GNAO1, GRIA4, and KCNA5 as potential diagnostic biomarkers in colorectal cancer
Cited by: 32
Author(s): Nina Hauptman, Daša Jevšinek Skok, Elena Spasovska, Emanuela Boštjančič, Damjan Glavač
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0166282

Bacterially-Associated Transcriptional Remodelling in a Distinct Genomic Subtype of Colorectal Cancer Provides a Plausible Molecular Basis for Disease Development
Cited by: 37
Author(s): Katie Lennard, Ryan Goosen, Jonathan M. Blackburn
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pgen.1001043

Breast Cancer DNA Methylation Profiles Are Associated with Tumor Size and Alcohol and Folate Intake
Cited by: 144
Author(s): Brock C. Christensen, Karl T. Kelsey, Shichun Zheng, E. Andrés Houseman, Carmen J. Marsit, Margaret Wrensch, Joseph L. Wiemels, Heather H. Nelson, Margaret R. Karagas, Lawrence H. Kushi, Marilyn L. Kwan, John K. Wiencke
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pgen.1000602

Aging and Environmental Exposures Alter Tissue-Specific DNA Methylation Dependent upon CpG Island Context
Cited by: 947
Author(s): Brock C. Christensen, E. Andrés Houseman, Carmen J. Marsit, Shichun Zheng, Margaret Wrensch, Joseph L. Wiemels, Heather H. Nelson, Margaret R. Karagas, Jamés F. Padbury, Raphael Bueno, David J. Sugarbaker, Ru Fang Yeh, John K. Wiencke, Karl T. Kelsey
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2105-15-199

Non-specific filtering of beta-distributed data
Cited by: 15
Author(s): Xinhui Wang, Peter W. Laird, Toshinori Hinoue, Susan Groshen, Kimberly D. Siegmund
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0020280

Integrative DNA Methylation and Gene Expression Analyses Identify DNA Packaging and Epigenetic Regulatory Genes Associated with Low Motility Sperm
Cited by: 117
Author(s): Sara Pacheco, E. Andrés Houseman, Brock C. Christensen, Carmen J. Marsit, Karl T. Kelsey, Mark Sigman, Kim Boekelheide
Software Mentions: 2
Published: over 13 years ago

10.1186/1471-230X-14-55

DNA methylation subgroups and the CpG island methylator phenotype in gastric cancer: a comprehensive profiling approach
Cited by: 34
Author(s): Marie Loh, Natalia Liem, Aparna Vaithilingam, Pei Li Lim, Nur Sabrina Sapari, Eiram Elahi, Zuan Yu Mok, Chee Leong Cheng, Benedict Yan, Brendan Pang, Manuel Salto-Tellez, Wei Peng Yong, Barry Iacopetta, Richie Soong
Software Mentions: 2
Published: over 10 years ago

10.1186/s40168-017-0277-3

The development of lower respiratory tract microbiome in mice
Cited by: 42
Author(s): Nisha Singh, Asheema Vats, Aditi Sharma, Amit Arora, Ashwani Kumar
Software Mentions: 2
Published: over 7 years ago

10.1186/s13148-018-0447-6

Promoter methylation of DNA damage repair (DDR) genes in human tumor entities: RBBP8/CtIP is almost exclusively methylated in bladder cancer
Cited by: 27
Author(s): Jolein Mijnes, Jürgen Veeck, Nadine T. Gaisa, Eduard Burghardt, Tim C. de Ruijter, Sonja Gostek, Edgar Dahl, David Pfister, Sebastian Schmid, Ruth Knüchel, Michael Rose
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-07057-3

Epigenetic changes in myelofibrosis: Distinct methylation changes in the myeloid compartments and in cases with ASXL1 mutations
Cited by: 9
Author(s): Henning Overgaard Nielsen, Christen Lykkegaard Andersen, Maj Westman, Lasse Sommer Kristensen, Fazila Asmar, Torben A. Kruse, Mads Thomassen, Thomas Stauffer Larsen, Vibe Skov, Lise Lotte Hansen, Ole Weis Bjerrum, Hans Carl Hasselbalch, Vasu Punj, Kirsten Grønbæk
Software Mentions: 1
Published: over 7 years ago

10.1289/ehp.1103927

<i>In Utero</i> Exposures, Infant Growth, and DNA Methylation of Repetitive Elements and Developmentally Related Genes in Human Placenta
Cited by: 178
Author(s): Charlotte S. Wilhelm-Benartzi, E. Andrés Houseman, Matthew A. Maccani, Graham M. Poage, Devin C. Koestler, Scott M. Langevin, Luc Gagne, Carolyn E. Banister, Jamés F. Padbury, Carmen J. Marsit
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0009651

Genetic and Epigenetic Somatic Alterations in Head and Neck Squamous Cell Carcinomas Are Globally Coordinated but Not Locally Targeted
Cited by: 38
Author(s): Graham M. Poage, Brock C. Christensen, E. Andrés Houseman, Michael D. McClean, John K. Wiencke, Marshall R. Posner, John R. Clark, Heather H. Nelson, Carmen J. Marsit, Karl T. Kelsey
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2407-13-313

DNA methylation analysis reveals distinct methylation signatures in pediatric germ cell tumors
Cited by: 40
Author(s): James F. Amatruda, Julie A. Ross, Brock C. Christensen, Nicholas J. Fustino, Kenneth Chen, Anthony J. Hooten, Heather H. Nelson, Jacquelyn K. Kuriger, Dinesh Rakheja, A. Lindsay Frazier, Jenny N. Poynter
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-9-365

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
Cited by: 174
Author(s): E. Andrés Houseman, Brock C. Christensen, Ru-Fang Yeh, Carmen J. Marsit, Margaret R. Karagas, Margaret Wrensch, Heather H. Nelson, Joseph L. Wiemels, Shichun Zheng, John K. Wiencke, Karl T. Kelsey
Software Mentions: 1
Published: over 16 years ago

10.1186/s12938-017-0356-5

Automated identification of reference genes based on RNA-seq data
Cited by: 21
Author(s): Rosario Carmona, María Castellano Arroyo, María José Jiménez-Quesada, Pedro Seoane, Adoración Zafra, Rafael Larrosa, Juan de Dios Alché, M. Gonzalo Claros
Software Mentions: 1
Published: over 7 years ago

Ecosyste.ms: Papers

Projects: cran: RPMM

Papers Mentioning RPMM 20