Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: RPANDA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RPANDA
Phylogenetic ANalyses of DiversificAtion
13 versions
Latest release: about 2 years ago
1 dependent package
471 downloads last month
Papers Mentioning RPANDA 24
10.1098/rspb.2020.1585
The signature of competition in ecomorphological traits across the avian radiationCited by: 8
Author(s): Angela-Maria Chira, Christopher R. Cooney, Jen A. Bright, E. J. R., Emma C. Hughes, Christopher J. Moody, Lara O Nouri, Zoë K Varley, Gavin H. Thomas
Software Mentions: 8
Published: almost 4 years ago
10.1098/rsos.161014
Testing the adaptive radiation hypothesis for the lemurs of MadagascarCited by: 27
Author(s): James P. Herrera
Software Mentions: 6
Published: almost 8 years ago
10.1371/journal.pbio.2002792
Seed size and its rate of evolution correlate with species diversification across angiospermsCited by: 55
Author(s): Javier Igea, Eleanor F. Miller, Alexander S. T. Papadopulos, Andrew J. Tanentzap
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pcbi.1008537
Factors influencing estimates of HIV-1 infection timing using BEASTCited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: almost 4 years ago
10.1038/s42003-021-01753-7
Universal probabilistic programming offers a powerful approach to statistical phylogeneticsCited by: 14
Author(s): Fredrik Ronquist, Jan Kudlicka, Viktor Senderov, Johannes Borgström, Nicolas Lartillot, Daniel Lundén, Lawrence M. Murray, Thomas B. Schön, David Broman
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pbio.2003563
Contrasting impacts of competition on ecological and social trait evolution in songbirdsCited by: 41
Author(s): Jonathan P. Drury, Joe Tobias, Kevin J. Burns, Nicholas A. Mason, Allison J. Shultz, Hélène Morlon
Software Mentions: 5
Published: almost 7 years ago
10.1111/ele.13476
Angiosperm speciation cools down in the tropicsCited by: 71
Author(s): Javier Igea, Andrew J. Tanentzap
Software Mentions: 4
Published: over 4 years ago
10.1073/pnas.2017384118
Fifty million years of beetle evolution along the Antarctic Polar FrontCited by: 17
Author(s): Helena P. Baird, Seunggwan Shin, Rolf G. Oberprieler, M. Hullé, Philippe Vernon, Katherine L. Moon, Richard H. Adams, Duane D. McKenna, Steven Loudon Chown
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pbio.3001270
Tempo and mode of morphological evolution are decoupled from latitude in birdsCited by: 4
Author(s): Jonathan P. Drury, Julien Clavel, Joe Tobias, Jonathan Rolland, Catherine Sheard, Hélène Morlon
Software Mentions: 4
Published: about 3 years ago
10.1093/sysbio/syz059
Macroevolutionary Analyses Suggest That Environmental Factors, Not Venom Apparatus, Play Key Role in Terebridae Marine Snail DiversificationCited by: 7
Author(s): Maria Vittoria Modica, Juliette Gorson, Alexander Fedosov, Gavin Malcolm, Yves Terryn, Nicolas Puillandre, Mandë Holford
Software Mentions: 3
Published: about 5 years ago
10.1186/s12862-020-01628-1
Mid-Cenozoic climate change, extinction, and faunal turnover in Madagascar, and their bearing on the evolution of lemursCited by: 14
Author(s): Laurie R. Godfrey, Karen E. Samonds, Justin W. Baldwin, Michael R. Sutherland, Jason M. Kamilar, Kristen L. Allfisher
Software Mentions: 3
Published: about 4 years ago
10.1186/s12862-019-1416-1
Clade-age-dependent diversification under high species turnover shapes species richness disparities among tropical rainforest lineages of Bulbophyllum (Orchidaceae)Cited by: 26
Author(s): Alexander Gamisch, Hans Peter Comes
Software Mentions: 3
Published: over 5 years ago
10.1038/s42003-019-0697-7
Modularity increases rate of floral evolution and adaptive success for functionally specialized pollination systemsCited by: 36
Author(s): Agnes S. Dellinger, Silvia Artuso, Susanne Pamperl, Fabián A. Michelangeli, Darin S. Penneys, Diana Fernández‐Fernández, Marcela Alvear, Frank Almeda, W. Scott Armbruster, Yannick M. Staedler, Jürg Schönenberger
Software Mentions: 3
Published: almost 5 years ago
10.1002/ece3.6816
The roles of wing color pattern and geography in the evolution of Neotropical Preponini butterfliesCited by: 6
Author(s): Elena Ortiz‐Acevedo, Juan Pablo Gómez, Marianne Espeland, Emmanuel F. A. Toussaint, Keith R. Willmott
Software Mentions: 3
Published: about 4 years ago
10.1186/s12862-021-01764-2
New Guinean orogenic dynamics and biota evolution revealed using a custom geospatial analysis pipelineCited by: 10
Author(s): Emmanuel F. A. Toussaint, L.B. White, Helena Shaverdo, Athena Lam, Suriani Surbakti, Rawati Panjaitan, Bob Sumoked, Thomas von Rintelen, Katayo Sagata, Michael Balke
Software Mentions: 3
Published: over 3 years ago
10.1111/evo.13593
History is written by the victors: The effect of the push of the past on the fossil recordCited by: 54
Author(s): Graham E. Budd, Richard P. Mann
Software Mentions: 2
Published: about 6 years ago
10.3389/fnana.2018.00054
Inferring Evolutionary Process From Neuroanatomical DataCited by: 5
Author(s): Éric Lewitus
Software Mentions: 2
Published: over 6 years ago
10.3389/fpls.2020.612258
Geo-Climatic Changes and Apomixis as Major Drivers of Diversification in the Mediterranean Sea Lavenders (Limonium Mill.)Cited by: 9
Author(s): Konstantina Koutroumpa, Ben Warren, Spyros Theodoridis, Mario Coiro, Maria M. Romeiras, Ares Jiménez, Elena Conti
Software Mentions: 2
Published: almost 4 years ago
10.1098/rspb.2017.0546
Independent evolution of baleen whale gigantism linked to Plio-Pleistocene ocean dynamicsCited by: 130
Author(s): Graham J. Slater, Jeremy A. Goldbogen, Nicholas D. Pyenson
Software Mentions: 2
Published: over 7 years ago
10.1111/ele.13483
Technical comment on Condamine et al. (2019): a cautionary note for users of linear diversification dependenciesCited by: 9
Author(s): Alexander Gamisch
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0162907
A Complete Fossil-Calibrated Phylogeny of Seed Plant Families as a Tool for Comparative Analyses: Testing the ‘Time for Speciation’ HypothesisCited by: 32
Author(s): Liam W. Harris, T. Jonathan Davies
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pbio.1002532
Natural Constraints to Species DiversificationCited by: 19
Author(s): Éric Lewitus, Hélène Morlon
Software Mentions: 1
Published: about 8 years ago
10.1093/ve/vez044
A non-parametric analytic framework for within-host viral phylogenies and a test for HIV-1 founder multiplicityCited by: 13
Author(s): Éric Lewitus, Morgane Rolland
Software Mentions: 1
Published: over 5 years ago
10.1590/1678-4685-GMB-2020-0254
Challenges in estimating virus divergence times in short epidemic timescales with special reference to the evolution of SARS-CoV-2 pandemicCited by: 2
Author(s): Carlos G. Schrago, Lucia P. Barzilai
Software Mentions: 1
Published: almost 4 years ago