Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: RPANDA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RPANDA

Phylogenetic ANalyses of DiversificAtion
13 versions
Latest release: almost 2 years ago
1 dependent package
471 downloads last month

Papers Mentioning RPANDA 24

The signature of competition in ecomorphological traits across the avian radiation
Cited by: 8
Author(s): Angela-Maria Chira, Christopher R. Cooney, Jen A. Bright, E. J. R., Emma C. Hughes, Christopher J. Moody, Lara O Nouri, Zoë K Varley, Gavin H. Thomas
Software Mentions: 8
Published: almost 4 years ago

10.1098/rsos.161014

Testing the adaptive radiation hypothesis for the lemurs of Madagascar
Cited by: 27
Author(s): James P. Herrera
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pbio.2002792

Seed size and its rate of evolution correlate with species diversification across angiosperms
Cited by: 55
Author(s): Javier Igea, Eleanor F. Miller, Alexander S. T. Papadopulos, Andrew J. Tanentzap
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pcbi.1008537

Factors influencing estimates of HIV-1 infection timing using BEAST
Cited by: 3
Author(s): Bethany L. Dearlove, Sodsai Tovanabutra, Christopher L. Owen, Éric Lewitus, Yifan Li, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Jerome H. Kim, Leigh Anne Eller, Sandhya Vasan, Robert A. Gramzinski, Nelson L. Michael, Merlin L. Robb, Morgane Rolland
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-021-01753-7

Universal probabilistic programming offers a powerful approach to statistical phylogenetics
Cited by: 14
Author(s): Fredrik Ronquist, Jan Kudlicka, Viktor Senderov, Johannes Borgström, Nicolas Lartillot, Daniel Lundén, Lawrence M. Murray, Thomas B. Schön, David Broman
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pbio.2003563

Contrasting impacts of competition on ecological and social trait evolution in songbirds
Cited by: 41
Author(s): Jonathan P. Drury, Joe Tobias, Kevin J. Burns, Nicholas A. Mason, Allison J. Shultz, Hélène Morlon
Software Mentions: 5
Published: over 6 years ago

10.1111/ele.13476

Angiosperm speciation cools down in the tropics
Cited by: 71
Author(s): Javier Igea, Andrew J. Tanentzap
Software Mentions: 4
Published: over 4 years ago

10.1073/pnas.2017384118

Fifty million years of beetle evolution along the Antarctic Polar Front
Cited by: 17
Author(s): Helena P. Baird, Seunggwan Shin, Rolf G. Oberprieler, M. Hullé, Philippe Vernon, Katherine L. Moon, Richard H. Adams, Duane D. McKenna, Steven Loudon Chown
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pbio.3001270

Tempo and mode of morphological evolution are decoupled from latitude in birds
Cited by: 4
Author(s): Jonathan P. Drury, Julien Clavel, Joe Tobias, Jonathan Rolland, Catherine Sheard, Hélène Morlon
Software Mentions: 4
Published: about 3 years ago

10.1093/sysbio/syz059

Macroevolutionary Analyses Suggest That Environmental Factors, Not Venom Apparatus, Play Key Role in Terebridae Marine Snail Diversification
Cited by: 7
Author(s): Maria Vittoria Modica, Juliette Gorson, Alexander Fedosov, Gavin Malcolm, Yves Terryn, Nicolas Puillandre, Mandë Holford
Software Mentions: 3
Published: about 5 years ago

10.1186/s12862-020-01628-1

Mid-Cenozoic climate change, extinction, and faunal turnover in Madagascar, and their bearing on the evolution of lemurs
Cited by: 14
Author(s): Laurie R. Godfrey, Karen E. Samonds, Justin W. Baldwin, Michael R. Sutherland, Jason M. Kamilar, Kristen L. Allfisher
Software Mentions: 3
Published: about 4 years ago

10.1186/s12862-019-1416-1

Clade-age-dependent diversification under high species turnover shapes species richness disparities among tropical rainforest lineages of Bulbophyllum (Orchidaceae)
Cited by: 26
Author(s): Alexander Gamisch, Hans Peter Comes
Software Mentions: 3
Published: over 5 years ago

10.1038/s42003-019-0697-7

Modularity increases rate of floral evolution and adaptive success for functionally specialized pollination systems
Cited by: 36
Author(s): Agnes S. Dellinger, Silvia Artuso, Susanne Pamperl, Fabián A. Michelangeli, Darin S. Penneys, Diana Fernández‐Fernández, Marcela Alvear, Frank Almeda, W. Scott Armbruster, Yannick M. Staedler, Jürg Schönenberger
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.6816

The roles of wing color pattern and geography in the evolution of Neotropical Preponini butterflies
Cited by: 6
Author(s): Elena Ortiz‐Acevedo, Juan Pablo Gómez, Marianne Espeland, Emmanuel F. A. Toussaint, Keith R. Willmott
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12862-021-01764-2

New Guinean orogenic dynamics and biota evolution revealed using a custom geospatial analysis pipeline
Cited by: 10
Author(s): Emmanuel F. A. Toussaint, L.B. White, Helena Shaverdo, Athena Lam, Suriani Surbakti, Rawati Panjaitan, Bob Sumoked, Thomas von Rintelen, Katayo Sagata, Michael Balke
Software Mentions: 3
Published: over 3 years ago

10.1111/evo.13593

History is written by the victors: The effect of the push of the past on the fossil record
Cited by: 54
Author(s): Graham E. Budd, Richard P. Mann
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnana.2018.00054

Inferring Evolutionary Process From Neuroanatomical Data
Cited by: 5
Author(s): Éric Lewitus
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2020.612258

Geo-Climatic Changes and Apomixis as Major Drivers of Diversification in the Mediterranean Sea Lavenders (Limonium Mill.)
Cited by: 9
Author(s): Konstantina Koutroumpa, Ben Warren, Spyros Theodoridis, Mario Coiro, Maria M. Romeiras, Ares Jiménez, Elena Conti
Software Mentions: 2
Published: over 3 years ago

10.1098/rspb.2017.0546

Independent evolution of baleen whale gigantism linked to Plio-Pleistocene ocean dynamics
Cited by: 130
Author(s): Graham J. Slater, Jeremy A. Goldbogen, Nicholas D. Pyenson
Software Mentions: 2
Published: over 7 years ago

10.1111/ele.13483

Technical comment on Condamine et al. (2019): a cautionary note for users of linear diversification dependencies
Cited by: 9
Author(s): Alexander Gamisch
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0162907

A Complete Fossil-Calibrated Phylogeny of Seed Plant Families as a Tool for Comparative Analyses: Testing the ‘Time for Speciation’ Hypothesis
Cited by: 32
Author(s): Liam W. Harris, T. Jonathan Davies
Software Mentions: 1
Published: almost 8 years ago