Ecosyste.ms: Papers

10.1371/journal.pone.0228565

Usefulness of rapid on-site evaluation specimens from endoscopic ultrasound-guided fine-needle aspiration for cancer gene panel testing: A retrospective study
Cited by: 8
Author(s): Tetsuya Ishizawa, Naohiko Makino, Akiko Matsuda, Yasuharu Kakizaki, Toshikatsu Kobayashi, Chisaki Ikeda, Shinpei Sugahara, Michihiko Tsunoda, Yoshiyuki Ueno
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0250832

Nutritional markers of undiagnosed type 2 diabetes in adults: Findings of a machine learning analysis with external validation and benchmarking
Cited by: 6
Author(s): Kushan De Silva, Siew Lim, Aya Mousa, Helena Teede, Andrew Forbes, Ryan T. Demmer, Daniel Jönsson, Joanne Enticott
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0004357

The Tree versus the Forest: The Fungal Tree of Life and the Topological Diversity within the Yeast Phylome
Cited by: 80
Author(s): Marina Marcet‐Houben, Toni Gabaldón
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0135466

When Is Rapid On-Site Evaluation Cost-Effective for Fine-Needle Aspiration Biopsy?
Cited by: 25
Author(s): Robert L. Schmidt, Brandon S Walker, Michael B. Cohen
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0034261

PHYRN: A Robust Method for Phylogenetic Analysis of Highly Divergent Sequences
Cited by: 18
Author(s): Gaurav Bhardwaj, Kyung Dae Ko, Young Ki Hong, Zhenhai Zhang, Ngai Lam Ho, Sree V. Chintapalli, Lindsay A. Kline, Matthew Gotlin, D. Nicholas Hartranft, Morgen E. Patterson, Foram Dave, Evan J. Smith, Edward C. Holmes, Randen L. Patterson, Damian B. van Rossum
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0030288

Accounting For Alignment Uncertainty in Phylogenomics
Cited by: 153
Author(s): Martin Wu, Sourav Chatterji, Jonathan A. Eisen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0027731

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation
Cited by: 169
Author(s): Kevin Liu, C. Randal Linder, Tandy Warnow
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0131326

The Dose-Dependent Effect of Nesiritide on Renal Function in Patients with Acute Decompensated Heart Failure: A Systematic Review and Meta-Analysis of Randomized Controlled Trials
Cited by: 9
Author(s): Bin Xiong, Chunbin Wang, Yuanqing Yang, Yu-Wen Huang, Jie Tan, Yin Cao, Yanke Zou, Huang Jing
Software Mentions: 1
Published: about 9 years ago

10.3390/cancers10020054

Advanced EUS Guided Tissue Acquisition Methods for Pancreatic Cancer
Cited by: 9
Author(s): Pujan Kandel, Michael B. Wallace
Software Mentions: 1
Published: over 6 years ago

10.1155/2014/560919

Modeling Mode Choice Behavior Incorporating Household and Individual Sociodemographics and Travel Attributes Based on Rough Sets Theory
Cited by: 7
Author(s): Long Cheng, Xuewu Chen, Ming Wei, Jingxian Wu, Xianyao Hou
Software Mentions: 1
Published: over 10 years ago

10.1186/s13054-019-2586-3

Neuromuscular blocking agents for acute respiratory distress syndrome: how did we get conflicting results?
Cited by: 6
Author(s): Heather Torbic, Sudhir Krishnan, Abhijit Duggal
Software Mentions: 1
Published: about 5 years ago

10.7759/cureus.6740

Comparison of Two Different Methods of Fine Needle Aspiration Biopsy and Histopathology for Thyroid Nodules
Cited by: 2
Author(s): Mustafa Serkan Karakaş, Gulsah Bicer, Ozge Findik, Ahmet Kahraman
Software Mentions: 1
Published: over 4 years ago

10.1186/s13000-020-01023-w

Phaeoacremonium species detected in fine needle aspiration: a rare case report
Cited by: 1
Author(s): Tummidi Santosh, Bitan Naik, Arundhathi Shankaralingappa, Pavithra Balakrishna, Arati Ankushrao Bhadada, Navya Kosaraju
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13072-018-0197-x

CREBBP/EP300 bromodomains are critical to sustain the GATA1/MYC regulatory axis in proliferation
Cited by: 40
Author(s): Verónica García-Carpizo, Sergio Ruíz-Llorente, Jacinto Sarmentero, Osvaldo Graña‐Castro, David G. Pisano, María J. Barrero
Software Mentions: 1
Published: over 6 years ago

10.3389/fdata.2021.643558

Predicting Admissions From a Paediatric Emergency Department – Protocol for Developing and Validating a Low-Dimensional Machine Learning Prediction Model
Cited by: 1
Author(s): Fiona Leonard, J. E. Gilligan, Michael J. Barrett
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.702552

APRANK: Computational Prioritization of Antigenic Proteins and Peptides From Complete Pathogen Proteomes
Cited by: 5
Author(s): Alejandro D Ricci, Mauricio Brunner, Diego Ramoa, Santiago J. Carmona, Morten Nielsen, Fernán Agüero
Software Mentions: 1
Published: about 3 years ago

10.3389/fmed.2020.562480

Practical Considerations Relating to Routine Clinical Biomarker Testing for Non–small Cell Lung Cancer: Focus on Testing for RET Fusions
Cited by: 6
Author(s): Roy S. Herbst, Dara L. Aisner, Joshua R. Sonett, Andrew T. Turk, Joshua Weintraub, Neal I. Lindeman
Software Mentions: 1
Published: over 3 years ago

10.3389/fmolb.2021.673363

Learning the Regulatory Code of Gene Expression
Cited by: 16
Author(s): Jan Zrimec, Filip Buric, Mariia Kokina, Víctor García, Aleksej Zelezniak
Software Mentions: 1
Published: over 3 years ago

10.1093/gbe/evz008

The Evolutionary Traceability of a Protein
Cited by: 22
Author(s): Arpit Jain, Dominik Perisa, Fabian Fliedner, Arndt von Haeseler, Ingo Ebersberger
Software Mentions: 1
Published: over 5 years ago

10.1186/s13012-018-0807-9

Protocol for the ROSE sustainment (ROSES) study, a sequential multiple assignment randomized trial to determine the minimum necessary intervention to maintain a postpartum depression prevention program in prenatal clinics serving low-income women
Cited by: 20
Author(s): Jennifer E. Johnson, Shannon Wiltsey Stirman, Alla Sikorskii, Ted R. Miller, Amanda King, Jennifer Blume, Xuan Dung Pham, Tiffany A. Moore Simas, Ellen L. Poleshuck, Rebecca J. Weinberg, Caron Zlotnick
Software Mentions: 1
Published: about 6 years ago

10.1038/srep24724

Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment
Cited by: 16
Author(s): Oriana Romano, Clelia Peano, Guidantonio Malagoli Tagliazucchi, Luca Petiti, Venerino Poletti, Fabienne Cocchiarella, Ermanno Rizzi, Marco Severgnini, Alessia Cavazza, Claudia Rossi, Pasqualepaolo Pagliaro, Alessandro Ambrosi, G. Ferrari, Silvio Bicciato, Gianluca De Bellis, Fulvio Mavilio, Annarita Miccio
Software Mentions: 1
Published: over 8 years ago

10.3390/s150715772

GUDM: Automatic Generation of Unified Datasets for Learning and Reasoning in Healthcare
Cited by: 13
Author(s): Rahman Ali, Muḥammad Zubair Ṣiddiqi, Muhammad Zaffwan Idris, Taqdir Ali, Shujaat Hussain, Eui‐Nam Huh, Byeong Ho Kang, Sungyoung Lee
Software Mentions: 1
Published: about 9 years ago

10.3390/s150715921

H2RM: A Hybrid Rough Set Reasoning Model for Prediction and Management of Diabetes Mellitus
Cited by: 41
Author(s): Rahman Ali, Jamil Hussain, Muḥammad Zubair Ṣiddiqi, Maqbool Hussain, Sungyoung Lee
Software Mentions: 1
Published: about 9 years ago

10.3390/s20216266

Flexibility Services Based on OpenADR Protocol for DSO Level
Cited by: 2
Author(s): Juan Ignacio Guerrero, Enrique Personal, Sebastián García, Antonio Parejo, Mansueto Rossi, Antonio López García, Federico Delfino, Ricardo C. Perez, Carlos León
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13044-021-00093-2

Factors affecting thyroid nodule fine needle aspiration non‐diagnostic rates: a retrospective association study of 1975 thyroid biopsies
Cited by: 10
Author(s): Devon Houdek, Sandra Cooke-Hubley, Lakshmi Puttagunta, Donald W. Morrish
Software Mentions: 1
Published: over 3 years ago

10.1101/2020.09.04.20187088

Serological Responses to Human Virome Define Clinical Outcomes of Italian Patients Infected with SARS-CoV-2
Cited by: 6
Author(s): Limin Wang, Julián Candia, Lichun Ma, Yongmei Zhao, Luisa Imberti, Alessandra Sottini, Kerry Dobbs, Andrea Lisco, Irini Sereti, Helen C. Su, Luigi D. Notarangelo, Xin Wei Wang
Software Mentions: 1
Published: about 4 years ago

10.1186/s13045-019-0757-y

Super-enhancers: critical roles and therapeutic targets in hematologic malignancies
Cited by: 63
Author(s): Yunlu Jia, Wee‐Joo Chng, Jianbiao Zhou
Software Mentions: 1
Published: about 5 years ago

10.1186/s13256-020-02542-2

Intimal angiosarcoma of the thoracic aorta diagnosed by endobronchial ultrasound-guided transbronchial needle aspiration: a case report
Cited by: 1
Author(s): Liliana Fernández‐Trujillo, Daisy Carolina Buenaventura, Luz F. Sua
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms20122883

Dysregulated Transcriptional Control in Prostate Cancer
Cited by: 20
Author(s): Simon J. Baumgart, Ekaterina Nevedomskaya, Bernard Haendler
Software Mentions: 1
Published: over 5 years ago

10.1186/1748-7188-3-6

DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment
Cited by: 213
Author(s): Alap R. Subramanian, Michael Kaufmann, Burkhard Morgenstern
Software Mentions: 1
Published: over 16 years ago