cran: ROCR | Projects | Ecosyste.ms: Papers

10.18632/aging.101886

Serum fatty acid binding protein 4 is positively associated with early stroke recurrence in nondiabetic ischemic stroke
Cited by: 4
Author(s): Bo Li, Jun Wu, Pengjun Jiang, Maogui Li, Qingyuan Li, Yong Cao, Shuo Wang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1007119

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq
Cited by: 3
Author(s): Xingshu Sun, Zhezhen Wang, Johnathon M Hall, Carlos Perez-Cervantes, Alexander J. Ruthenburg, Ivan P. Moskowitz, Michael Gribskov, Xinan Yang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pcbi.1004804

Computational and Empirical Studies Predict Mycobacterium tuberculosis-Specific T Cells as a Biomarker for Infection Outcome
Cited by: 32
Author(s): Simeone Marino, Hannah P. Gideon, Chang Gong, Shawn Mankad, John McCrone, Philana Ling Lin, Jennifer J. Linderman, Jo Anne L. Flynn, Denise E. Kirschner
Software Mentions: 1
Published: over 8 years ago

10.3390/ani9060384

The Use of Infrared Thermography for the Monitoring of Udder Teat Stress Caused by Milking Machines
Cited by: 7
Author(s): F.M. Tangorra, Veronica Redaelli, F. Luzi, M. Zaninelli
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1006942

EAT-Rice: A predictive model for flanking gene expression of T-DNA insertion activation-tagged rice mutants by machine learning approaches
Cited by: 4
Author(s): Chi-Chou Liao, Liang-Jwu Chen, Shuen‐Fang Lo, Chi‐Wei Chen, Yen-Wei Chu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1003192

On the Importance of Polar Interactions for Complexes Containing Intrinsically Disordered Proteins
Cited by: 56
Author(s): Eric Tsz Chung Wong, Dokyun Na, Jörg Gsponer
Software Mentions: 1
Published: over 11 years ago

10.7717/peerj.3561

Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine
Cited by: 19
Author(s): Ravindra Kumar, Bandana Kumari, Manish Kumar
Software Mentions: 1
Published: about 7 years ago

10.1155/2021/5546991

Serum Interleukin-37 Increases in Patients after Ischemic Stroke and Is Associated with Stroke Recurrence
Cited by: 3
Author(s): Ying Zhang, Chengbi Xu, Haitao Wang, Shanji Nan
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.11876

Potential Arabidopsis thaliana glucosinolate genes identified from the co-expression modules using graph clustering approach
Cited by: 7
Author(s): Sarahani Harun, Nor Afiqah‐Aleng, Mohammad Bozlul Karim, Altaf Ul Amin, Shigehiko Kanaya, Zeti‐Azura Mohamed‐Hussein
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-016-0998-5

SoftPanel: a website for grouping diseases and related disorders for generation of customized panels
Cited by: 3
Author(s): Likun Wang, Cong Zhang, Johnathan Watkins, Yan Jin, Michael A. McNutt, Yuxin Yin
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-15-156

In silico evaluation of the influence of the translocon on partitioning of membrane segments
Cited by: 1
Author(s): Dominique Tessier, Sami Laroum, Béatrice Duval, Emma M. Rath, W. Bret Church, Jin‐Kao Hao
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-019-48162-9

A qPCR expression assay of IFI44L gene differentiates viral from bacterial infections in febrile children
Cited by: 24
Author(s): Alberto Gómez‐Carballa, Miriam Cebey-López, Jacobo Pardo‐Seco, Ruth Barral-Arca, Irene Rivero‐Calle, Sara Pischedda, María José Currás-Tuala, José Gómez-Rial, Francisco Barros, Federico Martinón‐Torres, Antonio Salas
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-018-2867-8

Environmental and social determinants of population vulnerability to Zika virus emergence at the local scale
Cited by: 14
Author(s): Erin E. Rees, Tatiana Petukhova, Mariola Mascarenhas, Yann Pelcat, Nicholas H. Ogden
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.16144

LoLoPicker: detecting low allelic-fraction variants from low-quality cancer samples
Cited by: 24
Author(s): Jian Carrot‐Zhang, Jacek Majewski
Software Mentions: 1
Published: over 7 years ago

10.3390/v6010201

Estimating Hantavirus Risk in Southern Argentina: A GIS-Based Approach Combining Human Cases and Host Distribution
Cited by: 23
Author(s): Verónica Andreo, Markus Neteler, Duccio Rocchini, Cecilia Provensal, Silvana Levis, Ximena Porcasi, Annapaola Rizzoli, Mario Lanfri, Marcelo Scavuzzo, Noemí Pini, Delia Enría, Jaime Polop
Software Mentions: 1
Published: almost 11 years ago

10.3390/molecules23071584

Scoring Amino Acid Mutations to Predict Avian-to-Human Transmission of Avian Influenza Viruses
Cited by: 14
Author(s): Xiaoli Qiang, Zheng Kou, Gang Fang, Yanfeng Wang
Software Mentions: 1
Published: over 6 years ago

10.1093/molbev/msz183

Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies
Cited by: 13
Author(s): Christos Vlachos, Robert Kofler
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.17550

Quantitative prediction of oral cancer risk in patients with oral leukoplakia
Cited by: 18
Author(s): Yao Liu, Yicheng Li, Yue Fu, Tong Liu, Xiaoyong Liu, Xinyan Zhang, Jie Fu, Xin–Yuan Guan, Tong Chen, Xiaoxin Chen, Zheng Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms8070979

Diagnostic Potential of IgG and IgA Responses to Mycobacterium tuberculosis Antigens for Discrimination among Active Tuberculosis, Latent Tuberculosis Infection, and Non-Infected Individuals
Cited by: 13
Author(s): Ji Yeon Lee, Byoung Jun Kim, Hyeon Kyoung Koo, Jung-Hyun Kim, Jee Min Kim, Yoon Hoh Kook, Bumjoon J. Kim
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.18432

Intersecting transcriptomic profiling technologies and long non-coding RNA function in lung adenocarcinoma: discovery, mechanisms, and therapeutic applications
Cited by: 20
Author(s): Jonathan Castillo, Theresa Ryan Stueve, Crystal N. Marconett
Software Mentions: 1
Published: over 7 years ago

10.3390/metabo9030042

Metabolomics and Communication Skills Development in Children; Evidence from the Ages and Stages Questionnaire
Cited by: 21
Author(s): Rachel S. Kelly, Adrianna Boulin, Nancy Laranjo, Kathleen Lee-Sarwar, Su H. Chu, Aishwarya P. Yadama, Vincent J. Carey, Augusto A. Litonjua, Jessica Lasky‐Su, Scott T. Weiss
Software Mentions: 1
Published: over 5 years ago

10.1097/MD.0000000000004259

Stroke volume changes induced by a recruitment maneuver predict fluid responsiveness in patients with protective ventilation in the operating theater
Cited by: 14
Author(s): B. de Broca, Jeremie Garnier, Marc-Olivier Fischer, Thomas Archange, Julien Marc, Osama Abou-Arab, Hervé Dupont, Emmanuel Lorne, Pierre-Grégoire Guinot
Software Mentions: 1
Published: over 8 years ago

10.1155/2012/975783

A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology
Cited by: 46
Author(s): Gaston K. Mazandu, Nicola Mulder
Software Mentions: 1
Published: over 12 years ago

10.1186/s12936-015-0611-9

Submicroscopic and asymptomatic Plasmodium falciparum and Plasmodium vivax infections are common in western Thailand - molecular and serological evidence
Cited by: 77
Author(s): Elisabeth Baum, Jetsumon Sattabongkot, Jeeraphat Sirichaisinthop, Kirakorn Kiattibutr, D. Huw Davies, Aarti Jain, Eugenia Lo, Ming‐Chieh Lee, Arlo Randall, Douglas M. Molina, Xinmiao Liang, Liwang Cui, Philip L. Felgner, Guiyun Yan
Software Mentions: 1
Published: over 9 years ago

10.1186/s12944-019-1130-4

Racial differences in distribution of fatty acids in prostate cancer and benign prostatic tissues
Cited by: 20
Author(s): Xinchun Zhou, Hao Mei, Joshua Agee, Timera Brown, Jinghe Mao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-69537-3

Metagenomic analysis of gut microbiota in non-treated plaque psoriasis patients stratified by disease severity: development of a new Psoriasis-Microbiome Index
Cited by: 49
Author(s): Ignacio Dei-Cas, Florencia Giliberto, Leonela Natalia Luce, Hernán Dopazo, Alberto Penas Steinhardt
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-11-568

Peptide binding predictions for HLA DR, DP and DQ molecules
Cited by: 527
Author(s): Peng Wang, John Sidney, Young S. Kim, Alessandro Sette, Ole Lund, Morten Nielsen, Bjoern Peters
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12933-019-0908-z

The association between serum adiponectin and 3-month outcome after ischemic stroke
Cited by: 22
Author(s): Zengliang Wang, Bo Li, Yongxin Wang, Aisha Maimaitili, Qin Hu, Deqin Geng, Shuo Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-73918-z

Kynurenic acid is a potential overlapped biomarker between diagnosis and treatment response for depression from metabolome analysis
Cited by: 44
Author(s): Hisayuki Erabi, Go Okada, Chiyo Shibasaki, Daiki Setoyama, Dongchon Kang, Masahiro Takamura, Atsuo Yoshino, Manabu Fuchikami, Akiko Kurata, Takahiro A. Kato, Shigeto Yamawaki, Yasumasa Okamoto
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-16-S19-S7

Classification epitopes in groups based on their protein family
Cited by: 11
Author(s): Edgar Ernesto Gonzalez Kozlova, Benjamin Thomas Viart, Ricardo Andrez Machado de Ávila, Liza Felicori, Carlos Chávez-Olórtegui
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12933-020-01096-3

Elevated levels of adiponectin associated with major adverse cardiovascular and cerebrovascular events and mortality risk in ischemic stroke
Cited by: 29
Author(s): Wen‐Jun Tu, Hancheng Qiu, Yakun Liu, Qiang Liu, Xianwei Zeng, Jizong Zhao
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-11-70

LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships
Cited by: 28
Author(s): Adriano Barbosa-Silva, Theodoros Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade‐Navarro, Reinhard Schneider, José Miguel Ortega
Software Mentions: 1
Published: almost 15 years ago

10.1186/s40959-021-00109-8

Early detection of myocardial changes with and without dexrazoxane using serial magnetic resonance imaging in a pre-clinical mouse model
Cited by: 6
Author(s): Cory V. Noel, Nino Rainusso, Matthew J. Robertson, Jonathan Romero, Prakash Masand, Cristian Coarfa, Robia G. Pautler
Software Mentions: 1
Published: over 3 years ago

10.1002/cam4.17

Differential expression of mi <scp>RNAs</scp> in the serum of patients with high‐risk oral lesions
Cited by: 79
Author(s): Sara A. MacLellan, James Lawson, Jonathan Baik, Martial Guillaud, Catherine F. Poh, Cathie Garnis
Software Mentions: 1
Published: over 12 years ago

10.1007/s10548-014-0415-1

Automated Hippocampal Subfield Measures as Predictors of Conversion from Mild Cognitive Impairment to Alzheimer’s Disease in Two Independent Cohorts
Cited by: 62
Author(s): Wasim Khan, Eric Westman, Nigel C. Jones, Lars‐Olof Wahlund, Patrizia Mecocci, Bruno Vellas, Magda Tsolaki, Iwona Kłoszewska, Hilkka Soininen, Christian Spenger, Simon Lovestone, J‐Sebastian Muehlboeck, Andrew Simmons
Software Mentions: 1
Published: about 10 years ago

10.1016/j.str.2018.04.016

Modeling Protein Complexes Using Restraints from Crosslinking Mass Spectrometry
Cited by: 48
Author(s): Joshua Matthew Allen Bullock, Neeladri Sen, Konstantinos Thalassinos, Maya Topf
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20180786

Evaluation of serum retinol-binding protein-4 levels as a biomarker of poor short-term prognosis in ischemic stroke
Cited by: 14
Author(s): Yanyan Zhu, Jianlong Zhang, Li Liu, Yi Han, Xiaomin Ge, Shuai Zhao
Software Mentions: 1
Published: about 6 years ago

10.1128/mSphereDirect.00061-19

Distinct Antibody Signatures Associated with Different Malaria Transmission Intensities in Zambia and Zimbabwe
Cited by: 20
Author(s): Kunihiko Tamaki, Aarti Jain, Li Liang, Joshua M. Obiero, Harry Hamapumbu, Jennifer Stevenson, Philip E. Thuma, James Lupiya, Mike Chaponda, Modest Mulenga, Edmore Mamini, Sungano Mharakurwa, Lovemore Gwanzura, Shungu Munyati, Susan Mutambu, Philip L. Felgner, D. Huw Davies, William J. Moss
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20181100

Elevated RBP4 plasma levels were associated with diabetic retinopathy in type 2 diabetes
Cited by: 14
Author(s): Jiaying Li, Xianxian Chen, Xiaohua Lü, Chuangbiao Zhang, Qiankun Shi, Lin Feng
Software Mentions: 1
Published: about 6 years ago

10.1155/2019/6070176

Neopterin and CXCL-13 in Diagnosis and Follow-Up of Trypanosoma brucei gambiense Sleeping Sickness: Lessons from the Field in Angola
Cited by: 3
Author(s): Julien Bonnet, Philippe Vignoles, Natalia Tiberti, Vatunga Gedeão, Alexandre Hainard, Natacha Turck, Théophile Josenando, Joseph Mathu Ndung’u, Jean‐Charles Sanchez, Bertrand Castro, Sylvie Bisser
Software Mentions: 1
Published: almost 5 years ago

10.1155/2015/961314

Improved Diagnostic Multimodal Biomarkers for Alzheimer’s Disease and Mild Cognitive Impairment
Cited by: 16
Author(s): Antonio Martínez-Torteya, Víctor Treviño, José G. Tamez-Peña
Software Mentions: 1
Published: almost 10 years ago

10.1186/1479-7364-8-11

Ranking non-synonymous single nucleotide polymorphisms based on disease concepts
Cited by: 158
Author(s): Hashem A. Shihab, Julian Gough, Matthew Mort, David Neil Cooper, Ian N.M. Day, Tom R. Gaunt
Software Mentions: 1
Published: over 10 years ago

10.1186/1756-9966-32-94

DNA Methylation profiles as predictors of recurrence in non muscle invasive bladder cancer: an MS-MLPA approach
Cited by: 38
Author(s): Valentina Casadio, Chiara Molinari, Daniele Calistri, Michela Tebaldi, Roberta Gunelli, Luigi Serra, Fabio Falcini, Chiara Zingaretti, Rosella Silvestrini, Dino Amadori, Wainer Zoli
Software Mentions: 1
Published: about 11 years ago

10.1186/s40364-014-0025-9

A panel of DNA methylation markers reveals extensive methylation in histologically benign prostate biopsy cores from cancer patients
Cited by: 16
Author(s): Igor A. Brikun, Deborah Nusskern, Daniel L. Gillen, Amy Lynn, Daniel S. Murtagh, John D. Feczko, William G. Nelson, Diha Freije
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2105-11-198

Predictors of natively unfolded proteins: unanimous consensus score to detect a twilight zone between order and disorder in generic datasets
Cited by: 8
Author(s): Antonio Deiana, Andrea Giansanti
Software Mentions: 1
Published: over 14 years ago

10.1155/2017/7938216

Metabolomic Signature of Coronary Artery Disease in Type 2 Diabetes Mellitus
Cited by: 6
Author(s): Bernd Stratmann, Katrin Richter, Ruichao Wang, Zhonghao Yu, Tao Xu, Cornelia Prehn, Jerzy Adamski, Thomas Illig, Diethelm Tschöepe, Rui Wang-Sattler
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12917-014-0288-2

Identification of immunodominant antigens in canine leptospirosis by Multi-Antigen Print ImmunoAssay (MAPIA)
Cited by: 8
Author(s): Sabrina Thomé, Carolina Lessa-Aquino, Albert I. Ko, Walter Lilenbaum, Marco Alberto Medeiros
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2490-12-16

A tissue biopsy-based epigenetic multiplex PCR assay for prostate cancer detection
Cited by: 40
Author(s): Leander Van Neste, Joseph Bigley, Adam D. Toll, Gaëtan Otto, James S. Clark, P. Delrée, Wim Van Criekinge, Jonathan I. Epstein
Software Mentions: 1
Published: over 12 years ago

10.1186/1752-0509-4-95

Predicting functional associations from metabolism using bi-partite network algorithms
Cited by: 8
Author(s): Balaji Veeramani, Joel S. Bader
Software Mentions: 1
Published: over 14 years ago

10.1186/1756-0500-4-57

QiSampler: evaluation of scoring schemes for high-throughput datasets using a repetitive sampling strategy on gold standards
Cited by: 3
Author(s): Jean-Fred Fontaine, Bernhard Suter, Miguel A. Andrade‐Navarro
Software Mentions: 1
Published: over 13 years ago

10.1155/2018/3829307

Correlation between Virtual Screening Performance and Binding Site Descriptors of Protein Targets
Cited by: 7
Author(s): Jamal Shamsara
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12883-017-1010-3

Revealing Alzheimer’s disease genes spectrum in the whole-genome by machine learning
Cited by: 25
Author(s): Xiaoyan Huang, Hankui Liu, LI Xin-ming, Liping Guan, Jiankang Li, Laurent Tellier, Huanming Yang, Jian Wang, Shiping Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1186/1472-6947-8-56

Support vector machine versus logistic regression modeling for prediction of hospital mortality in critically ill patients with haematological malignancies
Cited by: 95
Author(s): T Verplancke, Stijn Van Looy, Dominique Benoît, Stijn Vansteelandt, P. Depuydt, Filip De Turck, Johan Decruyenaere
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12920-015-0145-6

Gene-expression patterns in peripheral blood classify familial breast cancer susceptibility
Cited by: 13
Author(s): Stephen R. Piccolo, Irene L. Andrulis, Adam L. Cohen, Thomas Conner, Philip J. Moos, Avrum Spira, Saundra S. Buys, W. Evan Johnson, Andrea Bild
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2014.00278

Comparative evaluation of DNase-seq footprint identification strategies
Cited by: 8
Author(s): Iros Barozzi, Pranami Bora, Marco J. Morelli
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.596826

Identification of Key MicroRNAs and Mechanisms in Prostate Cancer Evolution Based on Biomarker Prioritization Model and Carcinogenic Survey
Cited by: 13
Author(s): Yuxin Lin, Zhijun Miao, Xuefeng Zhang, Xuedong Wei, Jianquan Hou, Yuhua Huang, Bairong Shen
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2020.581454

Pyknon-Containing Transcripts Are Downregulated in Colorectal Cancer Tumors, and Loss of PYK44 Is Associated With Worse Patient Outcome
Cited by: 3
Author(s): Adriane Feijó Evangelista, Weder Pereira de Menezes, Gustavo Nóriz Berardinelli, Wellington dos Santos, Cristovam Scapulatempo‐Neto, Denise Peixoto Guimarães, George A. Calin, Rui Manuel Reis
Software Mentions: 1
Published: about 4 years ago

10.3389/fnagi.2017.00003

Quantitative EEG (QEEG) Measures Differentiate Parkinson's Disease (PD) Patients from Healthy Controls (HC)
Cited by: 49
Author(s): Menorca Chaturvedi, Florian Hatz, Ute Gschwandtner, J.G. Bogaarts, Antonia Meyer, Peter Fuhr, Volker Röth
Software Mentions: 1
Published: almost 8 years ago

10.1002/ece3.2316

Climate change is the primary driver of white‐tailed deer (Odocoileus virginianus) range expansion at the northern extent of its range; land use is secondary
Cited by: 83
Author(s): Kimberly L. Dawe, Stan Boutin
Software Mentions: 1
Published: over 8 years ago

10.1186/cc9055

Prohormones for prediction of adverse medical outcome in community-acquired pneumonia and lower respiratory tract infections
Cited by: 127
Author(s): Philipp Schuetz, Marcel Wolbers, Mirjam Christ‐Crain, Robert V. Thomann, Claudine Falconnier, Isabelle Widmer, Stefanie Neidert, Thomas Fricker, C Blum, Ursula Schild, Nils G. Morgenthaler, Ronald A. Schoenenberger, Christoph Henzen, Thomas Bregenzer, Claus Hoess, Martín Krause, Heiner C. Bucher, Werner Zimmerli, Beat Müeller
Software Mentions: 1
Published: almost 15 years ago

10.1155/2015/362806

ROC-Boosting: A Feature Selection Method for Health Identification Using Tongue Image
Cited by: 6
Author(s): Yan Cui, Shizhong Liao, Hongwu Wang
Software Mentions: 1
Published: almost 10 years ago

10.6061/clinics/2018/e184

Expression of tumor suppressors miR-195 and let-7a as potential biomarkers of invasive breast cancer
Cited by: 22
Author(s): Márcia Maria Chiquitelli Marques, Adriane Feijó Evangelista, Taciane Macedo, René Aloísio da Costa Vieira, Cristovam Scapulatempo‐Neto, Rui Manuel Reis, André Lopes Carvalho, Ismael Dale Cotrim Guerreiro da Silva
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnhum.2015.00402

Prognostic value of cerebrospinal fluid free fatty acid levels in patients with acute ischemic stroke
Cited by: 7
Author(s): Xue-Jun Wei, Meng Han, Guangchen Wei, Chong-Hao Duan
Software Mentions: 1
Published: over 9 years ago

10.1186/1752-153X-7-49

Designing of inhibitors against drug tolerant Mycobacterium tuberculosis (H37Rv)
Cited by: 20
Author(s): Deepak Singla, Rupinder Tewari, Ashwani Kumar, G. P. S. Raghava
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0156986

An Algorithm to Identify Target-Selective Ligands – A Case Study of 5-HT7/5-HT1A Receptor Selectivity
Cited by: 10
Author(s): Rafał Kurczab, Vittorio Canale, Paweł Zajdel, Andrzej J. Bojarski
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2020.612564

Validation of Differentially Expressed Immune Biomarkers in Latent and Active Tuberculosis by Real-Time PCR
Cited by: 10
Author(s): Prem Perumal, Mohamed Bilal Abdullatif, Harriet Garlant, Isobella Honeyborne, Marc Lipman, Timothy D. McHugh, Jo Southern, Ronan Breen, George Santis, Ellappan Kalaiarasan, Senthil Kumar, Harish Narasimha Belgode, Ibrahim Abubakar, Sanjeev Sinha, Seshadri S. Vasan, Noyal Mariya Joseph, Karen E. Kempsell
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0181831

Receiver Operating Characteristic curve analysis determines association of individual potato foliage volatiles with onion thrips preference, cultivar and plant age
Cited by: 4
Author(s): C. R. Wilson, Noel W. Davies, Ross Corkrey, Alan J. Wilson, A. Mathews, Guy Westmore
Software Mentions: 1
Published: over 7 years ago

10.1186/s13018-021-02469-4

A new prediction model for patient satisfaction after total knee arthroplasty and the roles of different scoring systems: a retrospective cohort study
Cited by: 6
Author(s): Jinyu Liu, Yi Yang, Shengcheng Wan, Zhenjun Yao, Ying Zhang, Yueqi Zhang, Peng Shi, Chi Zhang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0137303

Playing 20 Questions with the Mind: Collaborative Problem Solving by Humans Using a Brain-to-Brain Interface
Cited by: 37
Author(s): Andrea Stocco, Chantel S. Prat, Darby M. Losey, Jeneva A. Cronin, Jian Wu, Justin A. Abernethy, Rajesh P. N. Rao
Software Mentions: 1
Published: about 9 years ago

10.3389/fmed.2021.678424

Novel Gene Signatures Predicting Primary Non-response to Infliximab in Ulcerative Colitis: Development and Validation Combining Random Forest With Artificial Neural Network
Cited by: 4
Author(s): Jing Feng, Yueying Chen, Qi Feng, Zhihua Ran, Jun Shen
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0008487

Covariation of Branch Lengths in Phylogenies of Functionally Related Genes
Cited by: 5
Author(s): Wai Lok Sibon Li, Allen G. Rodrigo
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0049716

An Integrative Computational Framework Based on a Two-Step Random Forest Algorithm Improves Prediction of Zinc-Binding Sites in Proteins
Cited by: 24
Author(s): Chen Zheng, Mingjun Wang, Kazuhiro Takemoto, Tatsuya Akutsu, Ziding Zhang, Jiangning Song
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0045782

miR-BAG: Bagging Based Identification of MicroRNA Precursors
Cited by: 23
Author(s): Ashwani Jha, Rashi Chauhan, Mrigaya Mehra, Harprit Singh, Ravi Shankar
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0207777

Predicting antigenic variants of H1N1 influenza virus based on epidemics and pandemics using a stacking model
Cited by: 34
Author(s): Rui Yin, Viet Hung Tran, Xinrui Zhou, Jie Zheng, Chee Keong Kwoh
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0056466

The Evolutionary History of Amino Acid Variations Mediating Increased Resistance of S. aureus Identifies Reversion Mutations in Metabolic Regulators
Cited by: 2
Author(s): Mia D. Champion, Vanessa E. Gray, Carl Eberhard, Sudhir Kumar
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0088380

Genome-Wide Association Analysis and Genomic Prediction of Mycobacterium avium Subspecies paratuberculosis Infection in US Jersey Cattle
Cited by: 42
Author(s): Yalda Zare, G.E. Shook, Michael T. Collins, Brian Kirkpatrick
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0155872

PredHSP: Sequence Based Proteome-Wide Heat Shock Protein Prediction and Classification Tool to Unlock the Stress Biology
Cited by: 14
Author(s): Ravindra Kumar, Bandana Kumari, Manish Kumar
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0061437

Hybrid Approach for Predicting Coreceptor Used by HIV-1 from Its V3 Loop Amino Acid Sequence
Cited by: 17
Author(s): Rakesh Kumar, Gajendra P. S. Raghava
Software Mentions: 1
Published: over 11 years ago

10.1186/1755-8794-6-S1-S5

Identification of regulatory regions of bidirectional genes in cervical cancer
Cited by: 15
Author(s): Guohua Wang, Ke Qin, Yuming Zhao, Li Yu, Liran Juan, Mingxiang Teng, Lang Li, Yunlong Liu, Yadong Wang
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0159128

The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials
Cited by: 14
Author(s): Carmel McDougall, Ben J. Woodcroft, Bernard M. Degnan
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0035184

Respective Prognostic Value of Genomic Grade and Histological Proliferation Markers in Early Stage (pN0) Breast Carcinoma
Cited by: 17
Author(s): Fabien Reyal, Marc A. Bollet, Martial Caly, David Gentien, Sabrina Carpentier, Hélène Peyro‐Saint‐Paul, Jean‐Yves Pierga, Paul Cottu, Véronique Dièras, Brigitte Sigal‐Zafrani, Anne Vincent‐Salomon, Xavier Sastre-Garau
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0113859

Information Content-Based Gene Ontology Functional Similarity Measures: Which One to Use for a Given Biological Data Type?
Cited by: 35
Author(s): Gaston K. Mazandu, Nicola Mulder
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2105-10-317

Enhancing navigation in biomedical databases by community voting and database-driven text classification
Cited by: 29
Author(s): Timo Duchrow, Timur Shtatland, Daniel Guettler, Misha Pivovarov, Stefan Krämer, Ralph Weissleder
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0140155

Sparse Modeling Reveals miRNA Signatures for Diagnostics of Inflammatory Bowel Disease
Cited by: 29
Author(s): Matthias Hübenthal, Georg Hemmrich-Stanisak, Frauke Degenhardt, Silke Szymczak, Zhipei Gracie Du, Abdou ElSharawy, Andreas Keller, Stefan Schreiber, André Franke
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2017.00135

Size Matters a Lot: Drought-Affected Italian Oaks Are Smaller and Show Lower Growth Prior to Tree Death
Cited by: 61
Author(s): Michele Colangelo, J. Julio Camarero, Marco Borghetti, Antonio Gazol, Tiziana Gentilesca, Francesco Ripullone
Software Mentions: 1
Published: over 7 years ago

10.1186/s12879-021-06530-9

A novel approach to modeling epidemic vulnerability, applied to Aedes aegypti-vectored diseases in Perú
Cited by: 1
Author(s): Julianne Meisner, Lauren Frisbie, César V. Munayco, Patricia J. García, César Cárcamo, Cory W. Morin, David M. Pigott, Peter Rabinowitz
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyg.2019.01431

Making Every “Point” Count: Identifying the Key Determinants of Team Success in Elite Men’s Wheelchair Basketball
Cited by: 7
Author(s): John Francis, Alun Owen, D.M. Peters
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0054216

Predicting the Impact of Climate Change on Threatened Species in UK Waters
Cited by: 75
Author(s): Miranda C. Jones, Stephen Dye, José António Fernandes, Thomas L. Frölicher, John K. Pinnegar, Rachel Warren, William W. L. Cheung
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-13-183

Identification of avian W-linked contigs by short-read sequencing
Cited by: 41
Author(s): Nancy Chen, Daniel W. Bellott, David C. Page, Andrew G. Clark
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0077491

Classification of α-Helical Membrane Proteins Using Predicted Helix Architectures
Cited by: 4
Author(s): Sindy Neumann, Angelika Fuchs, Barbara Hummel, Dmitrij Frishman
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0161401

Prediction of Clinical Deterioration in Hospitalized Adult Patients with Hematologic Malignancies Using a Neural Network Model
Cited by: 43
Author(s): Shishan Hu, Deborah J. Wong, Aditi Correa, Ning Li, Jane C. Deng
Software Mentions: 1
Published: over 8 years ago

10.1186/gb-2007-8-3-r33

GOTax: investigating biological processes and biochemical activities along the taxonomic tree
Cited by: 22
Author(s): Andreas Schlicker, Jörg Rahnenführer, Mario Albrecht, Thomas Lengauer, Francisco S. Domingues
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0147285

Remote Sensing Derived Fire Frequency, Soil Moisture and Ecosystem Productivity Explain Regional Movements in Emu over Australia
Cited by: 4
Author(s): Nima Madani, John S. Kimball, Mona Nazeri, Lalit Kumar, David L. R. Affleck
Software Mentions: 1
Published: almost 9 years ago

10.1186/gb-2008-9-s1-s5

Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy
Cited by: 71
Author(s): Wankyu Kim, Chase S. Krumpelman, Edward M. Marcotte
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0200430

LMDIPred: A web-server for prediction of linear peptide sequences binding to SH3, WW and PDZ domains
Cited by: 11
Author(s): Debasree Sarkar, Tanmoy Jana, Sudipto Saha
Software Mentions: 1
Published: over 6 years ago

Projects: cran: ROCR

Papers Mentioning ROCR 596