Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ROCR

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ROCR

Visualizing the Performance of Scoring Classifiers
8 versions
Latest release: over 4 years ago
91 dependent packages
64,068 downloads last month

Papers Mentioning ROCR 596

10.3389/fimmu.2019.02501
TCR Fingerprinting and Off-Target Peptide Identification
Cited by: 25
Author(s): Armen R Karapetyan, Chawaree Chaipan, Katharina Winkelbach, Sandra Wimberger, Jun Seop Jeong, Bishnu P. Joshi, Robert B. Stein, Dennis Underwood, John C. Castle, Marc van Dijk, Volker Seibert
Software Mentions: 2
Published: about 5 years ago
10.3389/fonc.2020.00314
Tumor Mutational Burden Determined by Panel Sequencing Predicts Survival After Immunotherapy in Patients With Advanced Gastric Cancer
Cited by: 51
Author(s): Jin Chul Kim, Binnari Kim, So Young Kang, You Jeong Heo, Se Hoon Park, Seung Tae Kim, Won Ki Kang, Jeeyun Lee, Kyoung‐Mee Kim
Software Mentions: 2
Published: over 4 years ago
10.3389/fphar.2015.00186
Identifying problematic drugs based on the characteristics of their targets
Cited by: 9
Author(s): Tiago J. S. Lopes, Jason E. Shoemaker, Yoshikazu Matsuoka, Yoshihiro Kawaoka, Hiroaki Kitano
Software Mentions: 2
Published: about 9 years ago
10.3389/fpls.2018.00634
MU-LOC: A Machine-Learning Method for Predicting Mitochondrially Localized Proteins in Plants
Cited by: 26
Author(s): Ning Zhang, R. Shyama Prasad Rao, Fernanda Salvato, Jesper Foged Havelund, Ian Max Møller, Jay J. Thelen, Dong Xu
Software Mentions: 2
Published: over 6 years ago
10.1534/g3.111.001560
Predicting the Fission Yeast Protein Interaction Network
Cited by: 28
Author(s): Véra Pancaldi, Ömer Saraç, Charalampos Rallis, Janel R. McLean, Martin Převorovský, Kathleen L. Gould, Andreas Beyer, Jürg Bähler
Software Mentions: 2
Published: over 12 years ago
10.1186/s13059-014-0460-9
Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation
Cited by: 27
Author(s): Kyungpil Kim, Eugene Bolotin, Elizabeth Theusch, Haiyan Huang, Marisa W. Medina, Ronald M. Krauss
Software Mentions: 2
Published: about 10 years ago
10.1186/s13059-015-0581-9
Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Cited by: 163
Author(s): Weiwei Zhang, Tim D. Spector, Panos Deloukas, Jordana T. Bell, Barbara E. Engelhardt
Software Mentions: 2
Published: almost 10 years ago
10.1186/s13059-016-1045-6
Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction
Cited by: 135
Author(s): Alex S. Genshaft, Shuqiang Li, Caroline J. Gallant, Spyros Darmanis, Sanjay M. Prakadan, Carly G. K. Ziegler, Martin Lundberg, Fabrice Simon, Joyce Hong, Aviv Regev, Kenneth J. Livak, Ulf Landegren, Alex K. Shalek
Software Mentions: 2
Published: about 8 years ago
10.1186/gm463
Peripheral blood derived gene panels predict response to infliximab in rheumatoid arthritis and Crohn's disease
Cited by: 38
Author(s): Bertalan Meskó, Szilárd Póliska, Andrea Váncsa, Zoltán Szekanecz, Károly Palatka, Zsolt Holló, Attila Horváth, László Steiner, Gábor Zahuczky, János Podani, László Nagy
Software Mentions: 2
Published: almost 12 years ago
10.1186/s13073-016-0301-4
Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection
Cited by: 125
Author(s): Emmanuel Montassier, Gabriel A. Al‐Ghalith, Tonya Ward, Stéphane Corvec, Thomas Gastinne, G. Potel, Philippe Moreau, Éric Batard, Dan Knights
Software Mentions: 2
Published: over 8 years ago
10.1186/s13073-016-0331-y
Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease
Cited by: 194
Author(s): Kelly A. Shaw, Madeline Bertha, Tatyana Hofmekler, Pankaj Chopra, Tommi Vatanen, Abhiram Srivatsa, Jarod Prince, Archana Kumar, Cary G. Sauer, Michael E. Zwick, Glen A. Satten, Aleksandar D. Kostic, Jennifer G. Mullé, Ramnik J. Xavier, Subra Kugathasan
Software Mentions: 2
Published: over 8 years ago
10.1080/20008686.2020.1794668
Monitoring results of wild boar (<i>Sus scrofa</i>) in The Netherlands: analyses of serological results and the first identification of <i>Brucella suis</i> biovar 2
Cited by: 5
Author(s): Peter van Tulden, José L. Gonzáles, M. V. Kroese, Marc Engelsma, Frido de Zwart, Dorota Szot, Yvette Bisselink, Marga van Hagen-van Setten, Miriam Koene, P.T.J. Willemsen, Hendrik Jan Roest, Joke van der Giessen
Software Mentions: 2
Published: almost 5 years ago
10.1002/jbm4.10532
Independent External Validation of <scp>FRAX</scp> and Garvan Fracture Risk Calculators: A Sub‐Study of the <scp>FRISBEE</scp> Cohort
Cited by: 9
Author(s): Felicia Baleanu, Laura Iconaru, Adrian Charles, V. Kinnard, Jean‐François Fils, Michel Moreau, Rafik Karmali, Murielle Surquin, Florence Benoit, Aude Mugisha, Marianne Paesmans, Michaël Laurent, Pierre Bergmann, Jean-Jacques Body
Software Mentions: 2
Published: over 3 years ago
10.1128/JCM.01431-16
Multicenter Pivotal Clinical Trial of Urine Malaria Test for Rapid Diagnosis of Plasmodium falciparum Malaria
Cited by: 25
Author(s): Wellington Oyibo, Nnenna Ezeigwe, Godwin Ntadom, Olanrewaju Oladosu, Kaitlin Rainwater-Loveth, Wendy Prudhomme O’Meara, Evaezi Okpokoro, William R. Brieger
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13014-020-01545-z
Prognostic value of sarcopenia in patients treated by Radiochemotherapy for locally advanced oesophageal cancer
Cited by: 15
Author(s): Romain Mallet, Romain Modzelewski, Justine Lequesne, Sorina Dana Mihailescu, Pierre Decazes, H. Auvray, Ahmed Benyoucef, Frédéric Di Fiore, Pierre Véra, Bernard Dubray, S. Thureau
Software Mentions: 2
Published: over 4 years ago
10.1186/s12931-018-0828-6
Circulating microRNAs and prediction of asthma exacerbation in childhood asthma
Cited by: 62
Author(s): Alvin T. Kho, Michael J. McGeachie, Kip G. Moore, Jody M. Sylvia, Scott T. Weiss, Kelan G. Tantisira
Software Mentions: 2
Published: over 6 years ago
10.1038/srep38993
Comparative metagenomics reveals taxonomically idiosyncratic yet functionally congruent communities in periodontitis
Cited by: 83
Author(s): Shareef M Dabdoub, Sukirth M. Ganesan, Purnima Kumar
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-017-05001-z
MiR-320a as a Potential Novel Circulating Biomarker of Arrhythmogenic CardioMyopathy
Cited by: 36
Author(s): Elena Sommariva, Yuri D’Alessandra, Floriana Maria Farina, Michela Casella, Fabio Cattaneo, Valentina Catto, Mattia Chiesa, Ilaria Stadiotti, Silvia Brambilla, Antonio Dello Russo, Corrado Carbucicchio, Giulia Vettor, Daniela Riggio, Maria Teresa Sandri, Andrea Barbuti, Gianluca Vernillo, Manuela Muratori, Matteo Dal Ferro, Gianfranco Sinagra, Silvia Moimas, Mauro Giacca, Gualtiero I. Colombo, Giulio Pompilio, Claudio Tondo
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-11975-7
Differential Serum Cytokine Profiles in Patients with Chronic Hepatitis B, C, and Hepatocellular Carcinoma
Cited by: 37
Author(s): Jacqueline Estevez, Vincent Chen, Ondřej Podlaha, Biao Li, An K. Le, Philip Vutien, Ellen T. Chang, Yael Rosenberg-Hasson, Zhaoshi Jiang, Stefan Pflanz, Dongliang Ge, Anuj Gaggar, Mindie H. Nguyen
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-018-21922-9
Development and Evaluation of Novel Statistical Methods in Urine Biomarker-Based Hepatocellular Carcinoma Screening
Cited by: 17
Author(s): Jeremy Wang, Surbhi Jain, Dion Chen, Wei Song, Chi Hu, Ying Su
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-39048-x
The diagnostic accuracy of Th1 (IFN-γ, TNF-α, and IL-2) and Th2 (IL-4, IL-6 and IL-10) cytokines response in AFB microscopy smear negative PTB- HIV co-infected patients
Cited by: 21
Author(s): Job Kisuya, A. K. Chemtai, Evans Raballah, Alfred Keter, Collins Ouma
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-46216-6
Reproduction of molecular subtypes of gastric adenocarcinoma by transcriptome sequencing of archival tissue
Cited by: 7
Author(s): You Jeong Heo, Charny Park, Doyeong Yu, Jeeyun Lee, Kyoung‐Mee Kim
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-46872-8
Circulating microRNAs as Potential Diagnostic and Prognostic Biomarkers in Hepatocellular Carcinoma
Cited by: 90
Author(s): Yu Jin, Ye Shen Wong, Brian K. P. Goh, Chung Yip Chan, Peng Chung Cheow, Pierce K. H. Chow, Tony Kiat Hon Lim, Graham S. Goh, Thinesh Lee Krishnamoorthy, Rajneesh Kumar, Tze Pin Ng, Samuel S. Chong, Hwee Huang Tan, Alexander Y. F. Chung, London Lucien Peng Jin Ooi, Jaerak Chang, Chee Kiat Tan, Caroline Lee
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-54910-8
The role of CRP and Pentraxin 3 in the prediction of systemic inflammatory response syndrome and death in acute pancreatitis
Cited by: 21
Author(s): Sebastian M. Staubli, Juliane Schäfer, Rachel Rosenthal, Jasmin Zeindler, Daniel Oertli, Christian A. Nebiker
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-58326-7
Unique natural killer cell subpopulations are associated with exacerbation risk in chronic obstructive pulmonary disease
Cited by: 12
Author(s): Andrew R. Osterburg, Laura Lach, Ralph J. Panos, Michael T. Borchers
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-63230-1
Dysregulated miRNA in a cancer-prone environment: A study of gastric non-neoplastic mucosa
Cited by: 3
Author(s): Binnari Kim, Jiryeon Jang, You Jeong Heo, So Young Kang, Heejin Yoo, Insuk Sohn, Byung Hoon Min, Kyoung Mee Kim
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-67644-9
Study of factors influencing preoperative detection of alveolar antral artery by CBCT in sinus floor elevation
Cited by: 7
Author(s): Pablo Varela‐Centelles, María Loira, Antonio González-Mosquera, Amparo Romero-Méndez, Juan Seoane, María García-Pola, Juan M. Seoane-Romero
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-70479-z
Comparing different deep learning architectures for classification of chest radiographs
Cited by: 104
Author(s): Keno K. Bressem, Lisa C. Adams, Christoph Erxleben, Bernd Hamm, Stefan M. Niehues, Janis L. Vahldiek
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-74716-3
Multiscale consensus habitat modeling for landscape level conservation prioritization
Cited by: 15
Author(s): Erin E. Poor, Brian K. Scheick, Jennifer M. Mullinax
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-021-85699-0
Machine learning prediction of pathologic myopia using tomographic elevation of the posterior sclera
Cited by: 10
Author(s): Yong Chan Kim, Dong Jin Chang, So Jin Park, In Young Choi, Ye Gong, Hyun-Ah Kim, Hyung Bin Hwang, Kyung In Jung, Hae-young Lopilly Park, Chan Kee Park, Kui Dong Kang
Software Mentions: 2
Published: over 3 years ago
10.1155/2020/7862089
Microvascular Ultrasonic Imaging of Angiogenesis Identifies Tumors in a Murine Spontaneous Breast Cancer Model
Cited by: 6
Author(s): Sarah E. Shelton, Jodi Stone, Fei Gao, Donglin Zeng, Paul A. Dayton
Software Mentions: 2
Published: almost 5 years ago
10.3390/ijerph18063318
The Impact of Multiple Sclerosis Disease Status and Subtype on Hematological Profile
Cited by: 3
Author(s): Jeffrey G. Miller, Jeremy Beales, Matthew D. Montierth, Farren Briggs, Scott F Frodsham, Mary F. Davis
Software Mentions: 2
Published: over 3 years ago
10.1038/onc.2017.256
High-depth, high-accuracy microsatellite genotyping enables precision lung cancer risk classification
Cited by: 8
Author(s): Karthik Raja Velmurugan, Robin Varghese, Natalie C. Fonville, Harold R. Garner
Software Mentions: 2
Published: over 7 years ago
10.1155/2019/8393769
Identification of Cell-Free Circulating MicroRNAs for the Detection of Early Breast Cancer and Molecular Subtyping
Cited by: 26
Author(s): Karen Cristina Borba Souza, Adriane Feijó Evangelista, Letícia Ferro Leal, Cleonilson Protásio de Souza, René Aloísio da Costa Vieira, Rhafaela Lima Causin, Ana Caroline Neuber, Daniele P. Pessoa, Geraldo A. S. Passos, Rui Manuel Reis, Márcia Maria Chiquitelli Marques
Software Mentions: 2
Published: over 5 years ago
10.1186/s40463-015-0083-5
Serum microRNA profiling to distinguish papillary thyroid cancer from benign thyroid masses
Cited by: 47
Author(s): M. Elise Graham, Robert D. Hart, Susan E. Douglas, Fawaz M. Makki, Devanand M. Pinto, Angela L. Butler, Martin Bullock, Matthew H. Rigby, Jonathan Trites, S. Mark Taylor, R. K. Singh
Software Mentions: 2
Published: about 9 years ago
10.18632/oncotarget.11136
Integrative analysis of miRNA and gene expression reveals regulatory networks in tamoxifen-resistant breast cancer
Cited by: 27
Author(s): Tejal Joshi, Daniel Eliáš, Jan Stenvang, Carla L. Alves, Fei Teng, Maria Bibi Lyng, Annè E. Lykkesfeldt, Nils Brünner, Jun Wang, Ramneek Gupta, Christopher T. Workman, Henrik J. Ditzel
Software Mentions: 2
Published: over 8 years ago
10.18632/oncotarget.12010
A gene expression signature of retinoblastoma loss-of-function is a predictive biomarker of resistance to palbociclib in breast cancer cell lines and is prognostic in patients with ER positive early breast cancer
Cited by: 104
Author(s): Luca Malorni, Silvano Piazza, Yari Ciani, Cristina Guarducci, Martina Bonechi, Chiara Biagioni, Christopher Hart, Roberto Verardo, Angelo Di Leo, Ilenia Migliaccio
Software Mentions: 2
Published: about 8 years ago
10.18632/oncotarget.21725
Salivary miRNA panel to detect HPV-positive and HPV-negative head and neck cancer patients
Cited by: 44
Author(s): Yunxia Wan, Dimitrios Vagenas, Carolina Salazar, Lizbeth Kenny, Chris Perry, Diego A. Calvopina, Chamindie Punyadeera
Software Mentions: 2
Published: about 7 years ago
10.1093/ofid/ofab228
IgG Antibody Responses Are Preferential Compared With IgM for Use as Serological Markers for Detecting Recent Exposure to <i>Plasmodium vivax</i> Infection
Cited by: 7
Author(s): Rhea J. Longley, Michael White, Jessica Brewster, Zoe Liu, Caitlin Bourke, Eizo Takashima, Matthias Harbers, Wai‐Hong Tham, Julie Healer, Chetan E. Chitnis, Wuelton Marcelo Monteiro, Marcus Vinícius Guimarães Lacerda, Jetsumon Sattabongkot, Takafumi Tsuboi, Ivo Müeller
Software Mentions: 2
Published: over 3 years ago
10.1186/s12967-021-03000-3
Extracellular vesicle-derived AEBP1 mRNA as a novel candidate biomarker for diabetic kidney disease
Cited by: 11
Author(s): Yiying Tao, Xing Wei, Yue Yue, Jiaxin Wang, Jianzhong Li, Lei Shen, Guoyuan Lu, Yao He, Sihai Zhao, Fan Zhao, Zhen Weng, Xiahong Shen, Ling Zhou
Software Mentions: 2
Published: over 3 years ago
10.1186/s12967-018-1467-x
Sex and interleukin-6 are prognostic factors for autoimmune toxicity following treatment with anti-CTLA4 blockade
Cited by: 119
Author(s): Sara Valpione, Sandro Pasquali, Luca Giovanni Campana, Luisa Piccin, Simone Mocellin, Jacopo Pigozzo, Vanna Chiarion-Sileni
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0120066
Prediction and Analysis of Quorum Sensing Peptides Based on Sequence Features
Cited by: 72
Author(s): Abhishek Rajput, Amit Gupta, Manoj Kumar
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-230X-10-45
Diagnosis of rectal cancer by Tissue Resonance Interaction Method
Cited by: 5
Author(s): Alberto Vannelli, Luigi Battaglia, Elia Poiasina, Ermanno Leo
Software Mentions: 1
Published: over 14 years ago
10.1186/s12885-016-2082-y
Prediction of anticancer molecules using hybrid model developed on molecules screened against NCI-60 cancer cell lines
Cited by: 34
Author(s): Harinder Singh, Rahul Kumar, Sandeep Singh, Kumardeep Chaudhary, Ankur Gautam, Gajendra P. S. Raghava
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0191086
Global estimation of areas with suitable environmental conditions for mariculture species
Cited by: 56
Author(s): Muhammed A. Oyinlola, Gabriel Reygondeau, Colette C.C. Wabnitz, Max Troell, William W. L. Cheung
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12859-018-2142-1
Realizing drug repositioning by adapting a recommendation system to handle the process
Cited by: 20
Author(s): Makbule Guclin Ozsoy, Tansel Özyer, Faruk Polat, Reda Alhajj
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0097725
RNABindRPlus: A Predictor that Combines Machine Learning and Sequence Homology-Based Methods to Improve the Reliability of Predicted RNA-Binding Residues in Proteins
Cited by: 87
Author(s): Rasna R. Walia, Xue Li, Katherine Wilkins, Yasser EL-Manzalawy, Drena Dobbs, Vasant Honavar
Software Mentions: 1
Published: over 10 years ago
10.1186/s13059-019-1770-8
Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies
Cited by: 31
Author(s): Christos Vlachos, Claire Burny, Marta Pelizzola, Rui Borges, Andreas Futschik, Robert Kofler, Christian Schlötterer
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0051304
Computational Prediction of Protein-Protein Interactions in Leishmania Predicted Proteomes
Cited by: 31
Author(s): Antônio Mauro Rezende, Edson Luiz Folador, Daniela de Melo Resende, Jerônimo C. Ruiz
Software Mentions: 1
Published: almost 12 years ago
10.1186/gm347
Consensus: a framework for evaluation of uncertain gene variants in laboratory test reporting
Cited by: 11
Author(s): David K. Crockett, Perry G. Ridge, Andrew Wilson, Elaine Lyon, Marc S. Williams, Scott P. Narus, Julio C. Facelli, Joyce A. Mitchell
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0016872
Assessment of a 44 Gene Classifier for the Evaluation of Chronic Fatigue Syndrome from Peripheral Blood Mononuclear Cell Gene Expression
Cited by: 20
Author(s): Daniel Frampton, Jonathan Kerr, Tim J. Harrison, Paul Kellam
Software Mentions: 1
Published: over 13 years ago
10.3390/ijms12117748
A Lateral Flow Protein Microarray for Rapid and Sensitive Antibody Assays
Cited by: 30
Author(s): Jesper Gantelius, Tarek Bass, Ronald Sjöberg, Peter Nilsson, Helene Andersson-Svahn
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0108692
Risk Factors for Severe Neutropenia following Intra-Arterial Chemotherapy for Intra-Ocular Retinoblastoma
Cited by: 34
Author(s): Ira J. Dunkel, Wei Shi, Kim Salvaggio, Brian P. Marr, Scott E. Brodie, Y. Pierre Gobin, David H. Abramson
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0130665
High Mannose-Binding Lectin Serum Levels Are Associated with Diabetic Retinopathy in Chinese Patients with Type 2 Diabetes
Cited by: 5
Author(s): Qian Huang, Guilian Shang, Huaxin Deng, Jie Liu, Mei Yan, Yancheng Xu
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms13067283
Function Prediction and Analysis of Mycobacterium tuberculosis Hypothetical Proteins
Cited by: 82
Author(s): Gaston K. Mazandu, Nicola Mulder
Software Mentions: 1
Published: over 12 years ago
10.3390/ijms21030830
Practical Guidance in Genome-Wide RNA:DNA Triple Helix Prediction
Cited by: 16
Author(s): Elena Matveishina, Ivan Antonov, Yulia A. Medvedeva
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0055158
The Effects of Sampling Bias and Model Complexity on the Predictive Performance of MaxEnt Species Distribution Models
Cited by: 385
Author(s): Mindy M. Syfert, Matthew J. Smith, David A. Coomes
Software Mentions: 1
Published: almost 12 years ago
10.3928/24748307-20200909-01
Validation of a Short Form for Health Literacy Assessment Using Talking Touchscreen Technology
Cited by: 2
Author(s): Noël Slesinger, Kathleen J. Yost, Seung W. Choi, Elizabeth A. Hahn
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0022977
Strategies for Reforestation under Uncertain Future Climates: Guidelines for Alberta, Canada
Cited by: 64
Author(s): Laura K. Gray, Andreas Hamann
Software Mentions: 1
Published: over 13 years ago
10.1007/s12072-020-10056-8
Distribution and clinical relevance of phospholipids in hepatocellular carcinoma
Cited by: 6
Author(s): Zhongfan Liu, Zhen Zhang, Hao Mei, Jinghe Mao, Xinchun Zhou
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0138915
Improvements on GPS Location Cluster Analysis for the Prediction of Large Carnivore Feeding Activities: Ground-Truth Detection Probability and Inclusion of Activity Sensor Measures
Cited by: 19
Author(s): Kevin A. Blecha, Mathew W. Alldredge
Software Mentions: 1
Published: about 9 years ago
10.1186/1745-7580-4-1
Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins
Cited by: 62
Author(s): Johannes Söllner, Rainer Grohmann, Ronald Rapberger, Paul Perco, Arno Lukas, Bernd Mayer
Software Mentions: 1
Published: almost 17 years ago
10.1371/journal.pone.0009272
Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules
Cited by: 46
Author(s): Hao Zhang, Peng Wang, Nikitas Papangelopoulos, Ying Xu, Alessandro Sette, Philip E. Bourne, Ole Lund, Julia Ponomarenko, Morten Nielsen, Bjoern Peters
Software Mentions: 1
Published: almost 15 years ago
10.1186/1471-2105-8-252
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment
Cited by: 107
Author(s): Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente
Software Mentions: 1
Published: over 17 years ago
10.1186/1471-2105-8-227
Relationship between insertion/deletion (indel) frequency of proteins and essentiality
Cited by: 30
Author(s): Simon K. Chan, Michael Hsing, Fereydoun Hormozdiari, Artem Cherkasov
Software Mentions: 1
Published: over 17 years ago
10.1371/journal.pone.0111704
Genome-Wide Association Study of Susceptibility to Infection by Mycobacterium avium Subspecies paratuberculosis in Holstein Cattle
Cited by: 35
Author(s): Fazlı Alpay, Yalda Zare, Mamat Hamidi Kamalludin, Xixia Huang, Shi Xiao-li, G.E. Shook, Michael T. Collins, Brian Kirkpatrick
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0185331
Gene expression signature predicts human islet integrity and transplant functionality in diabetic mice
Cited by: 6
Author(s): Sunil M. Kurian, Kevin Ferreri, Chia-Hao Wang, Ivan Todorov, Ismail H. Al-Abdullah, Jeffrey Rawson, Yoko Mullen, Daniel R. Salomon, Fouad Kandeel
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0076944
Novel Multiplex Bead-Based Assay for Detection of IDH1 and IDH2 Mutations in Myeloid Malignancies
Cited by: 5
Author(s): Velizar Shivarov, Milena Ivanova, Evgueniy Hadjiev, Elissaveta Naumova
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0137727
Evaluation of TNF-α, IL-10 and IL-6 Cytokine Production and Their Correlation with Genotype Variants amongst Tuberculosis Patients and Their Household Contacts
Cited by: 42
Author(s): Lavanya Joshi, Meenakshi Ponnana, S Ramya, Lakshmi Kiran Chelluri, Prathiba Nallari, Sitaramaraju Penmetsa, V. Vijayalakshmi, Sumanlatha Gaddam
Software Mentions: 1
Published: about 9 years ago
10.1186/s13321-015-0100-8
Predictiveness curves in virtual screening
Cited by: 73
Author(s): Charly Empereur-mot, Hélène Guillemain, Aurélien Latouche, Jean‐François Zagury, Vivian Viallon, Matthieu Montès
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0012374
Anticipating Knowledge to Inform Species Management: Predicting Spatially Explicit Habitat Suitability of a Colonial Vulture Spreading Its Range
Cited by: 37
Author(s): Patricia Mateo‐Tomás, Pedro P. Olea
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0011794
Signal Transducers and Activators of Transcription-1 (STAT1) Regulates microRNA Transcription in Interferon γ-Stimulated HeLa Cells
Cited by: 56
Author(s): Guohua Wang, Yadong Wang, Mingxiang Teng, Denan Zhang, Lang Li, Yunlong Liu
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0189783
Early detection of Mycobacterium avium subsp. paratuberculosis infection in cattle with multiplex-bead based immunoassays
Cited by: 13
Author(s): Lingling Li, Bettina Wagner, Heather Freer, Megan A. Schilling, John P. Bannantine, Joseph J. Campo, Robab Katani, Yrjö T. Gröhn, Jessica Radzio‐Basu, Vivek Kapur
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0152359
Constructing Hypothetical Risk Data from the Area under the ROC Curve: Modelling Distributions of Polygenic Risk
Cited by: 11
Author(s): Suman Kundu, Jannigje G. Kers, A. Cecile J.W. Janssens
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0038219
FunFOLDQA: A Quality Assessment Tool for Protein-Ligand Binding Site Residue Predictions
Cited by: 21
Author(s): Daniel B. Roche, Maria T. Buenavista, Liam J. McGuffin
Software Mentions: 1
Published: over 12 years ago
10.1186/s12859-020-03783-0
MSpectraAI: a powerful platform for deciphering proteome profiling of multi-tumor mass spectrometry data by using deep neural networks
Cited by: 4
Author(s): Shisheng Wang, Hongwen Zhu, Hu Zhou, Jingqiu Cheng, Hao Yang
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.ppat.1000827
Serological Profiling of a Candida albicans Protein Microarray Reveals Permanent Host-Pathogen Interplay and Stage-Specific Responses during Candidemia
Cited by: 67
Author(s): A. Brian Mochon, Yue Jin, Matthew A. Kayala, John R. Wingard, Cornelius J. Clancy, M. Hong Nguyen, Philip L. Felgner, Pierre Baldi, Haoping Liu
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.ppat.1003972
Code-Assisted Discovery of TAL Effector Targets in Bacterial Leaf Streak of Rice Reveals Contrast with Bacterial Blight and a Novel Susceptibility Gene
Cited by: 120
Author(s): Raúl Andrés Cernadas, Erin L. Doyle, D. Niño-Liu, Katherine Wilkins, Timothy J. Bancroft, Li Wang, Claude H. Schmidt, Rico A. Caldo, Bing Yang, Frank F. White, Dan Nettleton, Roger P. Wise, Adam J. Bogdanove
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0132244
Glycated Hemoglobin, Fasting Insulin and the Metabolic Syndrome in Males. Cross-Sectional Analyses of the Aragon Workers’ Health Study Baseline
Cited by: 15
Author(s): Gabriela Saravia, Fernando Civeira, Yamilée Hurtado-Roca, Eva Andrés, Montserrat León, Miguel Pocovı́, José M. Ordovás, Eliseo Güallar, Antonio Fernández‐Ortíz, José A. Casasnovas, Martín Laclaustra
Software Mentions: 1
Published: over 9 years ago
10.1155/2016/6042162
PPARgene: A Database of Experimentally Verified and Computationally Predicted PPAR Target Genes
Cited by: 77
Author(s): Fang Li, Man Zhang, Yanhui Li, Yan Liu, Qinghua Cui, Nanping Wang
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0244257
Predicting field-goal success according to offensive, defensive and contextual variables in elite men’s wheelchair basketball
Cited by: 4
Author(s): John Francis, Alun Owen, D.M. Peters
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pntd.0002499
Identification of Seroreactive Proteins of Leptospira interrogans Serovar Copenhageni Using a High-Density Protein Microarray Approach
Cited by: 44
Author(s): Carolina Lessa-Aquino, Camila B. Rodrigues, Jozelyn Pablo, Rie Sasaki, Algis Jasinskas, Li Liang, Elsio A. Wunder, Guilherme S. Ribeiro, Adam Vigil, Ricardo Galler, Douglas M. Molina, Xinmiao Liang, Mitermayer Galvão dos Reis, Albert I. Ko, Marco Alberto Medeiros, Philip L. Felgner
Software Mentions: 1
Published: about 11 years ago
10.1186/s12974-020-01743-2
The association between serum adipocyte fatty acid–binding protein and 3-month disability outcome after aneurysmal subarachnoid hemorrhage
Cited by: 7
Author(s): Yi Luo, Bing Han, Tongwen Sun, Xianzhi Liu, Jun Liu, Jun Zhang
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pgen.1002036
Chromatin Organization in Sperm May Be the Major Functional Consequence of Base Composition Variation in the Human Genome
Cited by: 88
Author(s): Tanya Vavouri, Ben Lehner
Software Mentions: 1
Published: over 13 years ago
10.1186/1465-9921-14-59
Diagnosis of chronic obstructive pulmonary disease in lung cancer screening Computed Tomography scans: independent contribution of emphysema, air trapping and bronchial wall thickening
Cited by: 54
Author(s): Onno M. Mets, Michael A. Schmidt, Constantinus F. Buckens, Martijn J. A. Gondrie, Ivana Išgum, Matthijs Oudkerk, Rozemarijn Vliegenthart, Harry J. de Koning, Carlijn M. van der Aalst, Mathias Prokop, Jan‐Willem J. Lammers, Pieter Zanen, Firdaus A. Mohamed Hoesein, Willem P.Th.M. Mali, Bram van Ginneken, Eva M. van Rikxoort, Pim A. de Jong
Software Mentions: 1
Published: over 11 years ago
10.1186/s12974-018-1177-6
Decreased level of irisin, a skeletal muscle cell-derived myokine, is associated with post-stroke depression in the ischemic stroke population
Cited by: 44
Author(s): Wen‐Jun Tu, Hancheng Qiu, Qiang Liu, Xuemei Li, Jizong Zhao, Xianwei Zeng
Software Mentions: 1
Published: over 6 years ago
10.1590/S1518-8787.2016050006327
Accuracy of probabilistic and deterministic record linkage: the case of tuberculosis
Cited by: 19
Author(s): Gisele Pinto de Oliveira, Ana Luiza Bierrenbach, Kenneth Rochel de Camargo Júnior, Cláudia Medina Coeli, Rejane Sobrino Pinheiro
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13049-020-0713-4
Artificial intelligence algorithm to predict the need for critical care in prehospital emergency medical services
Cited by: 50
Author(s): Da-Young Kang, Kyung-Jae Cho, Oyeon Kwon, Joon‐myoung Kwon, Ki‐Hyun Jeon, Soo Young Park, Yeha Lee, Jinsik Park, Byung‐Hee Oh
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pcbi.1000110
The Ascent of the Abundant: How Mutational Networks Constrain Evolution
Cited by: 103
Author(s): Matthew C. Cowperthwaite, Evan P. Economo, William R. Harcombe, Eric L. Miller, Lauren Ancel Meyers
Software Mentions: 1
Published: over 16 years ago
10.1038/srep21280
HIV coreceptor tropism determination and mutational pattern identification
Cited by: 16
Author(s): Hui-Shuang Shen, Jason Dean-Chen Yin, Fei Leng, Ruifang Teng, Chao Xu, Xia-Yu Xia, Xian-Ming Pan
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pcbi.1000048
A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach
Cited by: 696
Author(s): Peng Wang, John Sidney, C. Dow, Bianca R. Mothé, Alessandro Sette, Bjoern Peters
Software Mentions: 1
Published: over 16 years ago
10.1038/srep30870
ge-CRISPR - An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system
Cited by: 35
Author(s): Karambir Kaur, Amit Gupta, Abhishek Rajput, Manoj Kumar
Software Mentions: 1
Published: about 8 years ago
10.1038/srep33824
Quantifying overlap between the Deepwater Horizon oil spill and predicted bluefin tuna spawning habitat in the Gulf of Mexico
Cited by: 22
Author(s): Elliott L. Hazen, Aaron B. Carlisle, Steven G. Wilson, James E. Ganong, Michael Castleton, Robert J. Schallert, Michael J. W. Stokesbury, Steven J. Bograd, Barbara A. Block
Software Mentions: 1
Published: about 8 years ago
10.1038/srep34595
GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features
Cited by: 54
Author(s): Fuyi Li, Chen Li, Jerico Revote, Yang Zhang, Geoffrey I. Webb, Jian Li, Jiangning Song, Trevor Lithgow
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pcbi.1002538
Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases
Cited by: 10
Author(s): David Ruau, Joel T. Dudley, Rong Chen, Nick Phillips, Gary E. Swan, Laura C. Lazzeroni, J. David Clark, Atul J. Butte, Martin S. Angst
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pcbi.1003429
Phylogenetic Gaussian Process Model for the Inference of Functionally Important Regions in Protein Tertiary Structures
Cited by: 22
Author(s): Yi Huang, G. Brian Golding
Software Mentions: 1
Published: almost 11 years ago
10.1186/ar3157
Prediction model for knee osteoarthritis based on genetic and clinical information
Cited by: 51
Author(s): Hiroshi Takahashi, Masahiro Nakajima, Kouichi Ozaki, Toshihiro Tanaka, Naoyuki Kamatani, Shiro Ikegawa
Software Mentions: 1
Published: about 14 years ago
10.1186/s12859-018-2248-5
SimCAL: a flexible tool to compute biochemical reaction similarity
Cited by: 4
Author(s): T. Sivakumar, Anirban Bhaduri, Rajasekhara Reddy Duvvuru Muni, Jin Hwan Park, Tae Yong Kim
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pcbi.0030110
CpG Island Mapping by Epigenome Prediction
Cited by: 169
Author(s): Christoph Bock, Jörn Walter, Martina Paulsen, Thomas Lengauer
Software Mentions: 1
Published: over 17 years ago
10.1038/s41598-017-08461-5
Field-based species identification of closely-related plants using real-time nanopore sequencing
Cited by: 61
Author(s): Joe Parker, Andrew J. Helmstetter, Dion S. Devey, Tim Wilkinson, Alexander S. T. Papadopulos
Software Mentions: 1
Published: over 7 years ago