cran: ROCR | Projects | Ecosyste.ms: Papers

10.3389/fphys.2018.01778

Identification of Crucial Genes and Pathways in Human Arrhythmogenic Right Ventricular Cardiomyopathy by Coexpression Analysis
Cited by: 11
Author(s): Peipei Chen, Bo Long, Yuanfu Xu, Wei Wu, Shuyang Zhang
Software Mentions: 6
Published: almost 6 years ago

10.1186/1758-2946-3-51

An investigation into pharmaceutically relevant mutagenicity data and the influence on Ames predictive potential
Cited by: 47
Author(s): Patrick McCarren, Clayton Springer, Lewis Whitehead
Software Mentions: 6
Published: almost 13 years ago

10.1210/en.2019-00165

Search for Early Pancreatic Cancer Blood Biomarkers in Five European Prospective Population Biobanks Using Metabolomics
Cited by: 18
Author(s): Jesse Fest, Lisanne S Vijfhuizen, Jelle J. Goeman, Olga Veth, Anni Joensuu, Markus Perola, Satu Männistö, Eivind Ness-Jensen, Kristian Hveem, Toomas Haller, Neeme Tõnisson, Kairit Mikkel, Andres Metspalu, Cornelia M. van Duijn, M. Arfan Ikram, Bruno H. Ch. Stricker, Rikje Ruiter, Casper H.J. van Eijck, Gert‐Jan B. van Ommen, Peter A.C. ’t Hoen
Software Mentions: 6
Published: over 5 years ago

10.1186/s12968-015-0217-y

Mapping tissue inhomogeneity in acute myocarditis: a novel analytical approach to quantitative myocardial edema imaging by T2-mapping
Cited by: 51
Author(s): Bettina Baeßler, Frank Schaarschmidt, Anastasia Dick, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 6
Published: almost 9 years ago

10.1186/s12893-020-00726-7

A novel nomogram to predict the risk of anastomotic leakage in patients after oesophagectomy
Cited by: 10
Author(s): Chengjie Huang, Haijun Yao, Qi Huang, Huijie Lu, Mengdan Xu
Software Mentions: 6
Published: over 4 years ago

10.1002/hbm.24554

Detection of mild cognitive impairment in a community‐dwelling population using quantitative, multiparametric MRI‐based classification
Cited by: 6
Author(s): Mark J. R. J. Bouts, Jeroen van der Grond, Meike W. Vernooij, Marisa Koini, Tijn M. Schouten, Frank de Vos, Rogier A. Feis, Lotte G.M. Cremers, Anita Lechner, Reinhold Schmidt, Mark de Rooij, Wiro J. Niessen, M. Arfan Ikram, Serge A.R.B. Rombouts
Software Mentions: 6
Published: over 5 years ago

10.1186/s12967-020-02597-1

Transcriptome analysis identifies putative multi-gene signature distinguishing benign and malignant pancreatic head mass
Cited by: 8
Author(s): Bishnupriya Chhatriya, Moumita Mukherjee, Sukanta Ray, Barsha Saha, Somdatta Lahiri, Sandip Halder, Indranil Ghosh, Sujan Khamrui, Kshaunish Das, Samsiddhi Bhattacharjee, Saroj Kant Mohapatra, Srikanta Goswami
Software Mentions: 6
Published: about 4 years ago

10.1186/1471-2105-12-77

pROC: an open-source package for R and S+ to analyze and compare ROC curves
Cited by: 7,791
Author(s): Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller
Software Mentions: 6
Published: over 13 years ago

10.1098/rsob.160183

Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
Cited by: 10
Author(s): Ashley J. Waardenberg, Homan Bernou, Mohamed Salim, Richard P. Harvey, Romaric Bouveret
Software Mentions: 6
Published: about 8 years ago

10.3390/genes12040549

Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple Negative Breast Cancer (TNBC) by Target Gene Network and Meta-Analysis
Cited by: 15
Author(s): Amal Qattan, Taher Al‐Tweigeri, Wafa Alkhayal, Kausar Suleman, Asma Tulbah, Suad Bin Amer
Software Mentions: 6
Published: over 3 years ago

10.1155/2020/2357840

A Real-World Study of Prognosis of N0M0 Hepatocellular Carcinoma with Hepatic Resection Based on SEER Database
Cited by: 3
Author(s): Guoqi Zhu, Wensheng Wang, Qin Liu, Dongfeng Chen, Liangzhi Wen
Software Mentions: 6
Published: over 4 years ago

10.7717/peerj.7969

Machine learning analysis to identify the association between risk factors and onset of nosocomial diarrhea: a retrospective cohort study
Cited by: 4
Author(s): Ken Kurisu, Kazuhiro Yoshiuchi, Kei Ogino, Toshimi Oda
Software Mentions: 6
Published: about 5 years ago

10.1186/gm496

A robust prognostic signature for hormone-positive node-negative breast cancer
Cited by: 18
Author(s): Obi L. Griffith, François Pépin, Oana Enache, Laura M. Heiser, Eric A. Collisson, Paul T. Spellman, Joe W. Gray
Software Mentions: 6
Published: almost 12 years ago

10.1186/s13148-020-0810-2

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic and predictive biomarkers for coronary artery disease
Cited by: 12
Author(s): Chunlan Dong, Jiemei Chen, Jilin Zheng, Yiming Liang, Tao Yu, Yupeng Liu, Feng Gao, Jie Long, Hangyu Chen, Qianhui Zhu, Zilong He, Songnian Hu, Chuan He, Jian Lin, Yi-Da Tang, Haibo Zhu
Software Mentions: 6
Published: almost 5 years ago

10.18632/aging.203166

Identification and validation of inferior prognostic genes associated with immune signatures and chemotherapy outcome in acute myeloid leukemia
Cited by: 7
Author(s): Jie Wang, Hao Jian-ping, Nazim Uddin, Yun Wu, Rong Chen, Dongfeng Li, Dai-qin Xiong, Nan Ding, Jianhua Yang, Xiaowen Ding
Software Mentions: 6
Published: over 3 years ago

10.1186/s13071-018-2960-z

Detection of Plasmodium berghei infected Anopheles stephensi using near-infrared spectroscopy
Cited by: 26
Author(s): Pedro M. Esperança, Andrew M. Blagborough, Dari F. Da, Floyd E. Dowell, Thomas S. Churcher
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0153200

Comparison of Methodologies to Detect Low Levels of Hemolysis in Serum for Accurate Assessment of Serum microRNAs
Cited by: 143
Author(s): Jaynish S. Shah, Patsy S. Soon, Deborah J. Marsh
Software Mentions: 6
Published: over 8 years ago

10.3389/fgene.2020.634634

A Novel Prognostic Model of Early-Stage Lung Adenocarcinoma Integrating Methylation and Immune Biomarkers
Cited by: 17
Author(s): Jin Ren, Yun Yang, Chuanyin Li, Lu Xie, Ronggui Hu, Qin Xiong, Menghuan Zhang
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pntd.0008004

Implementation of a mass canine rabies vaccination campaign in both rural and urban regions in southern Malawi
Cited by: 14
Author(s): Carlos Sánchez-Soriano, Andrew D Gibson, Luke Gamble, Jordana L. Burdon Bailey, Dagmar Mayer, Frederic Lohr, Patrick Chikungwa, Julius L.C. Chulu, Ian Handel, Barend M. deC. Bronsvoort, Richard J. Mellanby, Stella Mazeri
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12877-019-1156-5

No effect of 25-hydroxyvitamin D supplementation on the skeletal muscle transcriptome in vitamin D deficient frail older adults
Cited by: 11
Author(s): Roland W. J. Hangelbroek, Anouk M.M. Vaes, Mark V. Boekschoten, Lex B. Verdijk, Guido Hooiveld, Luc J. C. van Loon, Lisette C. P. G. M. de Groot, Sander Kersten
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1005465

YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
Cited by: 272
Author(s): Christoph Stein, Anaïs F. Bardet, Guglielmo Roma, Sebastian Bergling, Ieuan Clay, Alexandra Ruchti, Claudia Agarinis, Tobias Schmelzle, Tewis Bouwmeester, Dirk Schübeler, Andreas Bauer
Software Mentions: 6
Published: over 9 years ago

10.18632/oncotarget.10882

Development of risk prediction models for glioma based on genome-wide association study findings and comprehensive evaluation of predictive performances
Cited by: 3
Author(s): Yingjie Zhao, Gong Chen, Hongjie Yu, Li Hu, Yunyi Bian, Dapeng Yun, Juxiang Chen, Ying Mao, Hongyan Chen, Daru Lu
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pntd.0002894

Domestic Animal Hosts Strongly Influence Human-Feeding Rates of the Chagas Disease Vector Triatoma infestans in Argentina
Cited by: 53
Author(s): Ricardo E. Gürtler, María C. Cecere, Gonzalo M. Vázquez-Prokopec, Leonardo A. Ceballos, Juan M. Gurevitz, María del Pilar Fernández, Uriel Kitron, Joel E. Cohen
Software Mentions: 6
Published: over 10 years ago

10.1186/1471-2164-12-544

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Cited by: 29
Author(s): Yun Chen, Mette Jørgensen, Raivo Kolde, Xiaobei Zhao, Brian J. Parker, Eivind Valen, Jiayu Wen, Albin Sandelin
Software Mentions: 6
Published: about 13 years ago

10.1371/journal.pone.0235328

Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections
Cited by: 10
Author(s): Liang Dong, Joshua R. Watson, Sha Cao, Samuel Arregui, Vijay Saxena, John Ketz, Abduselam K. Awol, Daniel M. Cohen, Jeffrey M. Caterino, David S. Hains, Andrew L. Schwaderer
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0225556

IL-18/IL-37/IP-10 signalling complex as a potential biomarker for discriminating active and latent TB
Cited by: 20
Author(s): Sebastian Wawrocki, Michał Seweryn, Grzegorz Kielnierowski, Wiesława Rudnicka, Marcin Włodarczyk, Magdalena Druszczyńska
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41416-018-0236-1

Phenotype-independent DNA methylation changes in prostate cancer
Cited by: 11
Author(s): Davide Pellacani, Alastair Droop, Fiona M. Frame, Matthew Simms, Vincent M. Mann, Anne T. Collins, Connie J. Eaves, Norman J. Maitland
Software Mentions: 6
Published: about 6 years ago

10.1038/s41409-019-0520-6

High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantation
Cited by: 10
Author(s): Stéphane Bühler, Helen Baldomero, Sylvie Ferrari‐Lacraz, José Manuel Nunes, Alicia Sanchez‐Mazas, Stravroula Massouridi-Levrat, Dominik Heim, Jörg Halter, Nair Gayathri, Yves Chalandon, Urs Schanz, Tayfun Güngör, Grazia Nicoloso, Jean‐Marie Tiercy, Jakob Passweg, Jean Villard
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0193929

Association of gadolinium-enhanced magnetic resonance imaging with hepatic fibrosis and inflammation in primary sclerosing cholangitis
Cited by: 7
Author(s): Sarah Keller, Annette Aigner, Roman Zenouzi, Anne C. Kim, Arnoud C. Meijer, Sören Weidemann, Till Krech, Ansgar W. Lohse, Gerhard Adam, Christoph Schramm, Jin Yamamura
Software Mentions: 6
Published: over 6 years ago

10.1186/s13065-020-00731-0

Relaxometric learning: a pattern recognition method for T2 relaxation curves based on machine learning supported by an analytical framework
Cited by: 4
Author(s): Yasuhiro Date, Feifei Wei, Yuuri Tsuboi, Kengo Ito, Kenji Sakata, Jun Kikuchi
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-019-40007-9

Language Outcomes in Adults with a History of Institutionalization: Behavioral and Neurophysiological Characterization
Cited by: 12
Author(s): Sergey A. Kornilov, Marina A. Zhukova, Irina V. Ovchinnikova, Irina V. Golovanova, O. Yu. Naumova, Tatiana Logvinenko, Aleksandra O. Davydova, M.V. Petrov, Maria Adebowale, Elena L. Grigorenko
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-61386-4

Increasing incidence of macular edema in excessive morning blood pressure surge in patients with retinal vein occlusion
Cited by: 2
Author(s): Hyun-Jin Kim, Yong Un Shin, Yong-Gu Lee, Min Ho Kang, Mincheol Seong, Heeyoon Cho, Ran Heo, Jin Kyu Park, Young‐Hyo Lim, Junho Shin
Software Mentions: 6
Published: over 4 years ago

10.1186/s10194-019-0987-y

Predicting treatment response using pharmacy register in migraine
Cited by: 6
Author(s): Thomas Folkmann Hansen, Mona Ameri Chalmer, Thilde Marie Haspang, Lisette J. A. Kogelman, Jes Olesen
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2407-9-164

Do serum biomarkers really measure breast cancer?
Cited by: 40
Author(s): Jonathan L. Jesneck, Sayan Mukherjee, Zoya R. Yurkovetsky, Merlise A. Clyde, Jeffrey R. Marks, Anna Lokshin, Joseph Y. Lo
Software Mentions: 5
Published: over 15 years ago

10.1371/journal.pone.0209018

Mucopolysaccharidosis type II detection by Naïve Bayes Classifier: An example of patient classification for a rare disease using electronic medical records from the Canadian Primary Care Sentinel Surveillance Network
Cited by: 19
Author(s): Behrouz Ehsani-Moghaddam, John Queenan, Jennifer MacKenzie, Richard Birtwhistle
Software Mentions: 5
Published: almost 6 years ago

10.1038/srep31479

Pancreas-enriched miRNAs are altered in the circulation of subjects with diabetes: a pilot cross-sectional study
Cited by: 131
Author(s): Attila A. Seyhan, Yury O. Nunez Lopez, Hui Xie, Fanchao Yi, Clayton E. Mathews, Magdalena Pasarica, Richard E. Pratley
Software Mentions: 5
Published: about 8 years ago

10.18632/aging.103861

Development of a susceptibility gene based novel predictive model for the diagnosis of ulcerative colitis using random forest and artificial neural network
Cited by: 20
Author(s): Hanyang Li, Lijie Lai, Jun Shen
Software Mentions: 5
Published: about 4 years ago

10.1093/bioinformatics/btx139

Estimating gene regulatory networks with pandaR
Cited by: 15
Author(s): Daniel Schlauch, Joseph N. Paulson, A. E. Young, Kimberly Glass, John Quackenbush
Software Mentions: 5
Published: over 7 years ago

10.3390/bioengineering8060085

Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class
Cited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: over 3 years ago

10.1016/j.pmedr.2021.101447

Individualized faecal immunochemical test cut-off based on age and sex in colorectal cancer screening
Cited by: 12
Author(s): Tim Kortlever, Manon van der Vlugt, Evelien Dekker, Patrick M. Bossuyt
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0163111

MetaPhinder—Identifying Bacteriophage Sequences in Metagenomic Data Sets
Cited by: 50
Author(s): Vanessa Isabell Jurtz, Julia Villarroel, Ole Lund, Mette Voldby Larsen, Morten Nielsen
Software Mentions: 5
Published: about 8 years ago

10.3390/jcm9041209

Clinical and Radiologic Features Together Better Predict Lung Nodule Malignancy in Patients with Soft-Tissue Sarcoma
Cited by: 1
Author(s): Cecilia Tetta, Antonio Giugliano, Laura Tonetti, Michele Rocca, Alessandra Longhi, Francesco Londero, Gianmarco Parise, Orlando Parise, Linda Renata Micali, Mark La Meir, Jos G. Maessen, Sandro Gelsomino
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.0030026

Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning
Cited by: 56
Author(s): Rachel Karchin, Alvaro N.A. Monteiro, Sean V. Tavtigian, Marcelo A. Carvalho, Andrej S̆ali
Software Mentions: 5
Published: almost 18 years ago

10.34133/2019/7937156

instaGraminoid, a Novel Colorimetric Method to Assess Herbicide Resistance, Identifies Patterns of Cross-Resistance in Annual Ryegrass
Cited by: 1
Author(s): Jefferson Paril, Alexandre Fournier‐Level
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12911-019-0929-2

ThalPred: a web-based prediction tool for discriminating thalassemia trait and iron deficiency anemia
Cited by: 18
Author(s): Vishuda Laengsri, Watshara Shoombuatong, W. Adirojananon, Chanin Nantasenamat, Virapong Prachayasittikul, Pornlada Nuchnoi
Software Mentions: 5
Published: about 5 years ago

10.3389/fonc.2021.626187

Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix
Cited by: 9
Author(s): Saloê Bispo, Ticiana Della Justina Farias, Patrícia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias dos Santos, Natasha Andressa Nogueira Jorge, Mauro A. A. Castro, Gabriel Wajnberg, Nicole de Miranda Scherer, Maria Luiza Nogueira Dias Genta, Jesus Paula Carvalho, Luísa Lina Villa, Laura Sichero, Fábio Passetti
Software Mentions: 5
Published: over 3 years ago

10.1186/s13148-018-0588-7

Analysis of repeated leukocyte DNA methylation assessments reveals persistent epigenetic alterations after an incident myocardial infarction
Cited by: 18
Author(s): Cavin Ward‐Caviness, Golareh Agha, Brian H. Chen, Liliane Pfeiffer, Rory Wilson, Peter Wolf, Christian Gieger, Joel Schwartz, Pantel Vokonas, Lifang Hou, Allan C. Just, Stefania Bandinelli, Dena G. Hernandez, Andrew B. Singleton, Holger Prokisch, Thomas Meitinger, Gabi Kastenmüller, Luigi Ferrucci, Andrea A. Baccarelli, Mélanie Waldenberger, Annette Peters
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0172572

Systematic analysis of non-structural protein features for the prediction of PTM function potential by artificial neural networks
Cited by: 8
Author(s): Henry Dewhurst, Matthew P. Torres
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0161344

Multitemporal Modelling of Socio-Economic Wildfire Drivers in Central Spain between the 1980s and the 2000s: Comparing Generalized Linear Models to Machine Learning Algorithms
Cited by: 49
Author(s): Lara Vilar, Israel Gómez, Javier Martínez‐Vega, Pilar Echavarría, David Riaño, M. Pilar Martín
Software Mentions: 5
Published: about 8 years ago

10.15252/msb.20177728

The landscape of human mutually exclusive splicing
Cited by: 50
Author(s): Klas Hatje, Raza-Ur Rahman, Ramón Vidal, Dominic Simm, Björn Hammesfahr, V. Bansal, Ashish Rajput, Michel‐Edwar Mickael, Ting Sun, Stefan Bonn, Martin Kollmar
Software Mentions: 5
Published: almost 7 years ago

10.3389/fonc.2019.01050

Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.562199

Pixel-Based Machine Learning and Image Reconstitution for Dot-ELISA Pathogen Diagnosis in Biological Samples
Cited by: 1
Author(s): Cleo Anastassopoulou, Athanasios Tsakris, George P. Patrinos, Yiannis Manoussopoulos
Software Mentions: 5
Published: over 3 years ago

10.3390/molecules26061789

Needle Trap Device-GC-MS for Characterization of Lung Diseases Based on Breath VOC Profiles
Cited by: 14
Author(s): Fernanda Monedeiro, Maciej Monedeiro-Milanowski, Ileana-Andreea Raţiu, Beata Brożek, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pntd.0009165

Heterogeneity in response to serological exposure markers of recent Plasmodium vivax infections in contrasting epidemiological contexts
Cited by: 14
Author(s): Jason Rosado, Michael White, Rhea J. Longley, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Jessica Brewster, Jetsumon Sattabongkot, Mitchel Guzmán-Guzmán, Alejandro Llanos-Cuentas, Joseph M. Vinetz, Dionicia Gamboa, Ivo Müeller
Software Mentions: 5
Published: almost 4 years ago

10.3390/ijerph9072479

Using Bioinformatic Approaches to Identify Pathways Targeted by Human Leukemogens
Cited by: 6
Author(s): Reuben Thomas, Jimmy Phuong, Cliona M. McHale, Luoping Zhang
Software Mentions: 5
Published: over 12 years ago

10.2196/27977

Factors to Effective Telemedicine Visits During the COVID-19 Pandemic: Cohort Study
Cited by: 7
Author(s): Kristin N Gmunder, Jose W. Ruiz, Dido Franceschi, Maritza Suarez
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pntd.0004549

Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: over 8 years ago

10.1186/s40168-021-01056-3

Anna Karenina and the subgingival microbiome associated with periodontitis
Cited by: 15
Author(s): Khaled Altabtbaei, Pooja Maney, Sukirth M. Ganesan, Shareef M Dabdoub, Haikady N. Nagaraja, Purnima Kumar
Software Mentions: 5
Published: over 3 years ago

10.1099/mgen.0.000366

AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains
Cited by: 5
Author(s): Laurent Guillier, Michèle Gourmelon, Solen Lozach, Sabrina Cadel-Six, Marie-Léone Vignaud, Nanna Sophia Mucha Munck, Tine Hald, Federica Di Palma
Software Mentions: 5
Published: over 4 years ago

10.1128/mBio.00765-21

Markers of Polyfunctional SARS-CoV-2 Antibodies in Convalescent Plasma
Cited by: 51
Author(s): Harini Natarajan, Andrew R. Crowley, Savannah E. Butler, Shiwei Xu, Joshua A. Weiner, Evan M. Bloch, Kirsten Littlefield, Wendy Wieland-Alter, Ruth I. Connor, Peter F. Wright, Sarah E. Benner, Tania S. Bonny, Oliver Laeyendecker, David J. Sullivan, Shmuel Shoham, Thomas C. Quinn, H. Benjamin Larman, Arturo Casadevall, Andrew Pekosz, Andrew D. Redd, Aaron A.R. Tobian, Margaret E. Ackerman
Software Mentions: 5
Published: over 3 years ago

10.3390/metabo11090638

Metabolite Ratios as Quality Indicators for Pre-Analytical Variation in Serum and EDTA Plasma
Cited by: 6
Author(s): Sven Heiling, Nadine Knutti, Franziska Scherr, Jörg Geiger, Juliane Weikert, Michael Rose, Roland Jahns, Uta Ceglarek, André Scherag, Michael Kiehntopf
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pgen.1002389

Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types
Cited by: 340
Author(s): Michael J. Ziller, Fabian Müller, Jing Liao, Yingying Zhang, Hongcang Gu, Christoph Bock, Patrick Boyle, Charles B. Epstein, B Bernstein, Thomas Lengauer, Andreas Gnirke, Alexander Meissner
Software Mentions: 5
Published: almost 13 years ago

10.1038/s41598-020-67897-4

New methodology to process shifted excitation Raman difference spectroscopy data: a case study of pollen classification
Cited by: 15
Author(s): Florian Korinth, Abdullah Saif Mondol, Clara Stiebing, Iwan W. Schie, Christoph Krafft, Jürgen Popp
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2020.560546

Identification of Driver Genes Regulating the T-Cell–Infiltrating Levels in Hepatocellular Carcinoma
Cited by: 3
Author(s): Yi Cai, Ying Tian, Jianchu Wang, Wei Wang, Qianli Tang, Libai Lu, Zongjiang Luo, Wenchuan Li, Yuan Lü, Jian Pu, Zhengxia Yang
Software Mentions: 5
Published: almost 4 years ago

10.1016/j.ccell.2019.02.009

Human Tumor-Associated Macrophage and Monocyte Transcriptional Landscapes Reveal Cancer-Specific Reprogramming, Biomarkers, and Therapeutic Targets
Cited by: 533
Author(s): Luca Cassetta, Stamatina Fragkogianni, Andrew H. Sims, Agnieszka Swierczak, Lesley M. Forrester, Hui Zhang, Daniel Soong, Tiziana Cotechini, Pavana Anur, Elaine Y. Lin, A Fidanza, Martha Lopez‐Yrigoyen, Michael Millar, Alexandra Urman, Zhichao Ai, Paul T. Spellman, E. Shelley Hwang, JM Dixon, Lisa Wiechmann, Lisa M. Coussens, Harriet O. Smith, Jeffrey W. Pollard
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-14-293

A data-driven approach to preprocessing Illumina 450K methylation array data
Cited by: 805
Author(s): Ruth Pidsley, Chloe Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C. Schalkwyk
Software Mentions: 5
Published: over 11 years ago

10.1186/s12864-016-2819-7

An evaluation of processing methods for HumanMethylation450 BeadChip data
Cited by: 52
Author(s): Jie Liu, Kimberly D. Siegmund
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-57218-9

Immune gene signatures for predicting durable clinical benefit of anti-PD-1 immunotherapy in patients with non-small cell lung cancer
Cited by: 109
Author(s): Sohyun Hwang, Ah-Young Kwon, Jooyeon Jeong, Sewha Kim, Haeyoun Kang, Joon-Suk Park, Joo-Hang Kim, Ok Jin Han, Sun Min Lim, Hee Jung An
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0033954

Housing Arrangement and Location Determine the Likelihood of Housing Loss Due to Wildfire
Cited by: 129
Author(s): Alexandra D. Syphard, Jon E. Keeley, Avi Bar Massada, Teresa J. Brennan, Volker C. Radeloff
Software Mentions: 5
Published: over 12 years ago

10.1038/srep37248

A competing-risk-based score for predicting twenty-year risk of incident diabetes: the Beijing Longitudinal Study of Ageing study
Cited by: 10
Author(s): Xiangtong Liu, Zhenghong Chen, Jason P. Fine, Long Liu, Anxin Wang, Jin Guo, Lixin Tao, Gehendra Mahara, Kun Yang, Jie Zhang, Sijia Tian, Haibin Li, Kuo Li, Yanxia Luo, Feng Zhang, Zhe Tang, Xiuhua Guo
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pcbi.1002963

Computational Biomarker Pipeline from Discovery to Clinical Implementation: Plasma Proteomic Biomarkers for Cardiac Transplantation
Cited by: 39
Author(s): Gabriela V. Cohen Freue, Anna Meredith, Derek Smith, Axel Bergman, Mayu Sasaki, Karen Lam, Zsuzsanna Hollander, Nina Opushneva, Mandeep Takhar, David Lin, J. Wilson-McManus, Robert Balshaw, Paul Keown, Christoph H. Borchers, Bruce M. McManus, Raymond T. Ng, W. Robert McMaster
Software Mentions: 5
Published: over 11 years ago

10.3389/fncel.2018.00106

Automated Morphological Analysis of Microglia After Stroke
Cited by: 155
Author(s): Steffanie Heindl, Benno Gesierich, Corinne Benakis, Gemma Llovera, Marco Duering, Arthur Liesz
Software Mentions: 5
Published: over 6 years ago

10.1186/s13018-021-02425-2

Development and validation of a nomogram predicting the risk of recurrent lumbar disk herniation within 6 months after percutaneous endoscopic lumbar discectomy
Cited by: 17
Author(s): Mengxian Jia, Yadong Sheng, Guoliang Chen, Wenbin Zhang, Jiajin Lin, Shan Lu, Fayi Li, Jinwei Ying, Hui Teng
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0118808

Prediction of Chemical Respiratory Sensitizers Using GARD, a Novel In Vitro Assay Based on a Genomic Biomarker Signature
Cited by: 31
Author(s): Andy Forreryd, Henrik Johansson, Ann-Sofie Albrekt, Carl Borrebaeck, Malin Lindstedt
Software Mentions: 4
Published: over 9 years ago

10.3389/fbioe.2020.00206

Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort
Cited by: 4
Author(s): Yang Sheng, Cheng Yan-ping, Tong Liu, Ning Liu, Yufeng Liu, Geyu Liang
Software Mentions: 4
Published: over 4 years ago

10.1186/1471-2407-14-739

MicroRNA expression as risk biomarker of breast cancer metastasis: a pilot retrospective case-cohort study
Cited by: 42
Author(s): Augusto L F Marino, Adriane Feijó Evangelista, René Aloísio da Costa Vieira, Taciane Macedo, Lígia Maria Kerr, Lucas Faria Abrahão-Machado, Adhemar Longatto‐Filho, Henrique C. S. Silveira, Márcia Maria Chiquitelli Marques
Software Mentions: 4
Published: about 10 years ago

10.1155/2019/5437531

Long Noncoding RNA ASB16-AS1 Promotes Proliferation, Migration, and Invasion in Glioma Cells
Cited by: 26
Author(s): Delong Zhang, Huanggui Zhou, Jun Liu, Jie Mao
Software Mentions: 4
Published: over 5 years ago

10.1098/rsos.171398

Isotopic niche reflects stress-induced variability in physiological status
Cited by: 41
Author(s): Agnes M. L. Karlson, Martin Reutgard, Andrius Garbaras, Elena Gorokhova
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcvm.2021.614204

Development and Validation of a Predictive Model for Coronary Artery Disease Using Machine Learning
Cited by: 7
Author(s): Chen Wang, Yue Zhao, Bingyu Jin, Xuedong Gan, Bin Liang, Yu‐Tao Xiang, Xiaokang Zhang, Zhibing Lu, Fang Zheng
Software Mentions: 4
Published: almost 4 years ago

10.1093/bioinformatics/btw570

Precrec: fast and accurate precision–recall and ROC curve calculations in R
Cited by: 145
Author(s): Takaya Saito, Marc Rehmsmeier
Software Mentions: 4
Published: about 8 years ago

10.1007/s00330-017-5031-5

Optimising preoperative risk stratification tools for prostate cancer using mpMRI
Cited by: 17
Author(s): Lars Anders Rokne Reisæter, Jurgen J. Fütterer, Are Losnegård, Yngve Nygård, Jan Ankar Monssen, Karsten Gravdal, Ole J. Halvorsen, Lars A. Akslen, Martin Biermann, Svein A. Haukaas, Jarle Rørvik, Christian Beisland
Software Mentions: 4
Published: about 7 years ago

10.1186/s12915-020-00783-7

Tropomyosin 1 genetically constrains in vitro hematopoiesis
Cited by: 8
Author(s): Christopher S. Thom, Chintan Jobaliya, Kimberly Lorenz, Jean Ann Maguire, Alyssa Gagne, Paul Gadue, Deborah L. French, Benjamin F. Voight
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.3827

Characterizing habitat suitability for a central‐place forager in a dynamic marine environment
Cited by: 20
Author(s): Dana K. Briscoe, Sabrina Fossette, Kylie L. Scales, Elliott L. Hazen, Steven J. Bograd, Sara M. Maxwell, Elizabeth A. McHuron, Patrick W. Robinson, Carey E. Kuhn, Daniel P. Costa, Larry B. Crowder, Rebecca L. Lewison
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.1500

Testing Taxon Tenacity of Tortoises: evidence for a geographical selection gradient at a secondary contact zone
Cited by: 17
Author(s): Taylor Edwards, Kristin H. Berry, Richard Inman, Todd C. Esque, Kenneth E. Nussear, Cristina A. Jones, Melanie Culver
Software Mentions: 4
Published: over 9 years ago

10.1186/s12968-017-0387-x

A novel multiparametric imaging approach to acute myocarditis using T2-mapping and CMR feature tracking
Cited by: 30
Author(s): Bettina Baeßler, Melanie Treutlein, Frank Schaarschmidt, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.2514

Land abandonment and changes in snow cover period accelerate range expansions of sika deer
Cited by: 15
Author(s): Haruka Ohashi, Yuji Kominami, Motoki Higa, Dai Koide, Katsuhiro Nakao, Ikutaro Tsuyama, Tetsuya Matsui, Nobuyuki Tanaka
Software Mentions: 4
Published: about 8 years ago

10.1117/1.JBO.25.11.116002

Statistical evaluation of reader variability in assessing the diagnostic performance of optical coherence tomography
Cited by: 1
Author(s): Sarah J. Erickson-Bhatt, Douglas G. Simpson, Stephen A. Boppart
Software Mentions: 4
Published: about 4 years ago

10.1186/s12941-020-00408-5

Dysbiosis of urine microbiota in obstructive urinary retention patients revealed by next-generation sequencing
Cited by: 4
Author(s): Shan Jiang, Saisai Lu, Xiaomin Chen, Fengxia Li, Ce Zhu, Yuanyuan Zheng, Xiaobing Wang, Shihao Xu
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12918-017-0412-6

Detection of statistically significant network changes in complex biological networks
Cited by: 27
Author(s): Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: over 7 years ago

10.1002/emmm.201201974

Alteration of the micro <scp>RNA</scp> network during the progression of Alzheimer's disease
Cited by: 393
Author(s): Pierre Lau, Koen Bossers, Rekin’s Janky, Evgenia Salta, Carlo Sala Frigerio, Shahar Barbash, Roy Rothman, Annerieke Sierksma, Amantha Thathiah, David Greenberg, Aikaterini S. Papadopoulou, Tilmann Achsel, Torik Ayoubi, Hermona Soreq, Joost Verhaagen, Dick F. Swaab, Stein Aerts, Bart De Strooper
Software Mentions: 4
Published: about 11 years ago

10.7759/cureus.12518

Validity of TIMI Score for Predicting 14-Day Mortality of Non-ST Elevation Myocardial Infarction Patients
Cited by: 0
Author(s): Dileep Kumar, Tahir Saghir, Maham Zahid, Arti Ashok, Mukesh Kumar, Asad Hussain Shah, Izza Shahid, Sajjad Ali, Ayema Haque, Musa Karim
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12893-020-01033-x

Prognostic factors in patients who underwent surgery for common peroneal nerve injury: a nest case–control study
Cited by: 2
Author(s): Zhenhui Liu, Maimaiaili Yushan, Yanshi Liu, Aihemaitijiang Yusufu
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2105-8-449

A comparison of Affymetrix gene expression arrays
Cited by: 59
Author(s): Mark D. Robinson, Terence P. Speed
Software Mentions: 4
Published: about 17 years ago

10.1371/journal.pone.0176176

Disturbance of a rare seabird by ship-based tourism in a marine protected area
Cited by: 10
Author(s): Timothy K. Marcella, Scott M. Gende, Daniel D. Roby, Arthur Allignol
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0182356

BARD1 serum autoantibodies for the detection of lung cancer
Cited by: 18
Author(s): Maxim Pilyugin, Pascaline Descloux, Pierre Alain André, Viktória László, Balázs Döme, Balázs Hegedűs, Sylvain Sardy, Sam M. Janes, Andrea Bianco, Geoffrey J. Laurent, Irmgard Irminger-Finger
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0072966

EGFR Exon-Level Biomarkers of the Response to Bevacizumab/Erlotinib in Non-Small Cell Lung Cancer
Cited by: 11
Author(s): Florent Baty, Sacha I. Rothschild, Martin Früh, Daniel Betticher, Cornelia Dröge, Richard Cathomas, Daniel Rauch, Oliver Gautschi, Lukas Bubendorf, Susanne Crowe, Francesco Zappa, Miklos Pless, Martin Brutsche
Software Mentions: 4
Published: about 11 years ago

10.1186/1471-2369-15-60

A prediction model for renal artery stenosis using carotid ultrasonography measurements in patients undergoing coronary angiography
Cited by: 17
Author(s): Yong-Gu Lee, Jeong‐Hun Shin, Hwan Cheol Park, Soon Gil Kim, Sung Il Choi
Software Mentions: 4
Published: over 10 years ago

10.1186/s13054-017-1729-7

Protein S100 as outcome predictor after out-of-hospital cardiac arrest and targeted temperature management at 33 °C and 36 °C
Cited by: 61
Author(s): Pascal Stammet, Josef Dankiewicz, Niklas Nielsen, François Faÿs, Olivier Collignon, Christian Hassager, Michael Wanscher, Johan Undén, Jørn Wetterslev, Tommaso Pellis, Anders Åneman, Jan Hovdenes, Matt P. Wise, Georges Gilson, David Erlinge, Janneke Horn, Tobias Cronberg, Michael Kuiper, Jesper Kjærgaard, Yvan Gasche, Yvan Devaux, Hans Friberg
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0041370

Identification of Catalytic Residues Using a Novel Feature that Integrates the Microenvironment and Geometrical Location Properties of Residues
Cited by: 12
Author(s): Lei Han, Yongjun Zhang, Jiangning Song, Ming S. Liu, Ziding Zhang
Software Mentions: 4
Published: over 12 years ago

10.3390/jcm9051418

Circulating MicroRNAs as Potential Predictors of Anthracycline-Induced Troponin Elevation in Breast Cancer Patients: Diverging Effects of Doxorubicin and Epirubicin
Cited by: 27
Author(s): Sonia Gioffré, Mattia Chiesa, Daniela Cardinale, Veronica Ricci, Chiara Vavassori, Carlo M. Cipolla, Serge Masson, Maria Teresa Sandri, Michela Salvatici, Fabio Ciceri, Roberto Latini, Lidia Staszewsky, Giulio Pompilio, Gualtiero I. Colombo, Yuri D’Alessandra
Software Mentions: 4
Published: over 4 years ago

Projects: cran: ROCR

Papers Mentioning ROCR 596