cran: RDP | Projects | Ecosyste.ms: Papers

10.1186/1471-2148-8-24

Deep genetic divergences among Indo-Pacific populations of the coral reef sponge Leucetta chagosensis (Leucettidae): Founder effects, vicariance, or both?
Cited by: 81
Author(s): Gert Wörheide, Laura S. Epp, Luciana Macis
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12862-015-0456-4

Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution
Cited by: 85
Author(s): Izza Nasrullah, Azeem Mehmood Butt, Shifa Tahir, Muhammad Idrees, Yigang Tong
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2148-8-241

Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair
Cited by: 83
Author(s): Dong‐Dong Wu, David M. Irwin, Yaping Zhang
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2148-12-143

Ancestral polymorphism at the major histocompatibility complex (MHCIIß) in the Nesospiza bunting species complex and its sister species (Rowettia goughensis)
Cited by: 4
Author(s): Alexandra Jansen van Rensburg, Paulette Bloomer, Peter G. Ryan, Bengt Hansson
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2148-11-170

Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones
Cited by: 63
Author(s): Andreia Miraldo, Godfrey M. Hewitt, Octávio S. Paulo, Brent C. Emerson
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2148-11-139

Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species
Cited by: 7
Author(s): Fabrícia F. Nascimento, Jaime Gongora, Michael A. Charleston, Michael Tristem, Stewart Lowden, Chris Moran
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2148-7-26

Cited by: 27
Author(s): Andrew P. Jackson
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12862-017-0937-8

Surface layer proteins from virulent Clostridium difficile ribotypes exhibit signatures of positive selection with consequences for innate immune response
Cited by: 18
Author(s): Mark Lynch, Thomas A. Walsh, Izabela Marszalowska, Andrew E. Webb, Micheál MacAogain, Thomas R. Rogers, Henry J. Windle, Dermot Kelleher, Mary J. O’Connell, Christine E. Loscher
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2148-13-251

Molecular adaptation of telomere associated genes in mammals
Cited by: 31
Author(s): Claire C. Morgan, Ann Mc Cartney, Mark T.A. Donoghue, Noeleen B. Loughran, Charles Spillane, Emma C. Teeling, Mary J. O’Connell
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2148-11-128

Adaptive molecular evolution of the Major Histocompatibility Complex genes, DRA and DQA, in the genus Equus
Cited by: 35
Author(s): Pauline L. Kamath, Wayne M. Getz
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2148-12-56

Polyploid evolution and Pleistocene glacial cycles: A case study from the alpine primrose Primula marginata (Primulaceae)
Cited by: 37
Author(s): Gabriele Casazza, Laura Granato, Luigi Minuto, Elena Conti
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12862-017-0892-4

Ruminant-specific multiple duplication events of PRDM9 before speciation
Cited by: 3
Author(s): Abinash Padhi, Botong Shen, Jicai Jiang, Yang Zhou, George E. Liu, Li Ma
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2156-14-96

Genetic structure of Trypanosoma cruziin Colombia revealed by a High-throughput Nuclear Multilocus Sequence Typing (nMLST) approach
Cited by: 34
Author(s): Juan David Ramírez, Gabriela Tapia-Calle, Felipe Guhl
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2156-14-29

Evolutionary history of black grouse major histocompatibility complex class IIB genes revealed through single locus sequence-based genotyping
Cited by: 15
Author(s): Tanja M. Strand, Biao Wang, Yvonne Meyer‐Lucht, Jacob Höglund
Software Mentions: 1
Published: over 11 years ago

10.1186/s12863-019-0775-3

Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination
Cited by: 4
Author(s): Hyung‐Bae Jeon, Hari Won, Ho Young Suk
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-14-641

Alignment-free supervised classification of metagenomes by recursive SVM
Cited by: 31
Author(s): Henggang Cui, Xuegong Zhang
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-11-504

Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods
Cited by: 31
Author(s): Luz Adriana Sarmiento-Rubiano, Bernard Berger, D Moine, Manuel Zúñiga, Gaspar Pérez‐Martínez, Marı́a J. Yebra
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2164-15-607

Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand
Cited by: 13
Author(s): Naraporn Somboonna, Alisa Wilantho, Anunchai Assawamakin, Somchai Monanunsap, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Sissades Tongsima
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-017-4087-6

Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors
Cited by: 30
Author(s): Mylène Ruh, Martial Briand, Sophie Bonneau, Marie‐Agnès Jacques, Nicolas W.G. Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-017-3501-4

SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?
Cited by: 278
Author(s): Monika Balvočiūtė, Daniel H. Huson
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-9-576

Use of pyrosequencing and DNA barcodes to monitor variations in Firmicutes and Bacteroidetes communities in the gut microbiota of obese humans
Cited by: 77
Author(s): Fabrice Armougom, Didier Raoult
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12864-015-1422-7

Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella
Cited by: 17
Author(s): Tsunglin Liu, Ching Min Li, Yuhui Han, Tzen‐Yuh Chiang, Yu Chung Chiang, Huang Mo Sung
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-018-4975-4

Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean
Cited by: 28
Author(s): Nicolas W.G. Chen, Laurana Serres-Giardi, Mylène Ruh, Martial Briand, Sophie Bonneau, Armelle Darrasse, Valérie Barbe, Lionel Gagnevin, Ralf Koebnik, Marie‐Agnès Jacques
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-12-536

Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes
Cited by: 126
Author(s): Laura Gomez‐Valero, Christophe Rusniok, Sophie Jarraud, Benoît Vacherie, Zoé Rouy, Valérie Barbe, Claudine Médigue, Jérôme Etienne, Carmen Buchrieser
Software Mentions: 1
Published: about 13 years ago

10.1186/s12864-018-5389-z

Comparative genomics of Bacteria commonly identified in the built environment
Cited by: 5
Author(s): Nancy Merino, Shu Zhang, Masaru Tomita, Haruo Suzuki
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-12-240

Organization and molecular evolution of a disease-resistance gene cluster in coffee trees
Cited by: 29
Author(s): Alessandra Ferreira Ribas, Alberto Cenci, Marie‐Christine Combes, Hervé Etienne, Philippe Lebailly
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-12-S3-S17

Analysis of 16S rRNA environmental sequences using MEGAN
Cited by: 69
Author(s): Suparna Mitra, Mario Stärk, Daniel H. Huson
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12864-019-5735-9

Evolutionary dynamics of ten novel Gamma-PVs: insights from phylogenetic incongruence, recombination and phylodynamic analyses
Cited by: 5
Author(s): Alltalents T. Murahwa, Fredrick Nindo, Harris Onywera, Tracy L. Meiring, Darren P. Martin, Anna‐Lise Williamson
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-10-536

Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon
Cited by: 39
Author(s): Santiago Castillo-Ramírez, Jorge F. Vázquez-Castellanos, Víctor González, Miguel A. Cevallos
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12879-021-06297-z

Case report: first symptomatic Candidatus Neoehrlichia mikurensis infection in Slovenia
Cited by: 5
Author(s): Mitja Lenart, Miha Simoniti, Katja Strašek-Smrdel, Vesna Cvitković Špik, Tanja Selič-Kurinčič, Tatjana Avšič‐Županc
Software Mentions: 1
Published: over 3 years ago

10.1186/s12879-017-2697-x

Molecular characterization of hepatitis B virus in Vietnam
Cited by: 16
Author(s): Thi Ton Taht Bui, Tan Thanh Tran, My Ngoc Nghiem, Pierre Rahman, Thi Thanh Thanh Tran, Man Nguyen Huy Dinh, Manh Hung Le, Văn Vịnh Nguyễn, Guy Thwaites, Motiur Rahman
Software Mentions: 1
Published: about 7 years ago

10.1186/s12879-016-1856-9

Is Hepatitis Delta infections important in Brazil?
Cited by: 9
Author(s): M Cicero, Nathalia Mantovani Pena, Luiz Claudio Santana, R Arnold, Ramiro Anthero de Azevedo, Élcio Leal, Ricardo Sobhie Diaz, Shirley Vasconcelos Komninakis
Software Mentions: 1
Published: about 8 years ago

10.1186/s12879-016-1670-4

Association of sputum microbiota profiles with severity of community-acquired pneumonia in children
Cited by: 38
Author(s): Melinda M. Pettigrew, Janneane F. Gent, Yong Kong, Martina Wade, Shane Gansebom, Anna M. Bramley, Seema Jain, Susan Arnold, Jonathan A. McCullers
Software Mentions: 1
Published: over 8 years ago

10.1186/s12879-015-0860-9

Published sequences do not support transfer of oseltamivir resistance mutations from avian to human influenza A virus strains
Cited by: 2
Author(s): Peter Norberg, Magnus Lindh, Sigvard Olofsson
Software Mentions: 1
Published: over 9 years ago

10.1186/s12879-018-3419-8

Genetic characterization of norovirus GII.4 variants circulating in Canada using a metagenomic technique
Cited by: 19
Author(s): Nicholas Petronella, Jennifer Ronholm, Menka Suresh, Jennifer Harlow, Oksana Mykytczuk, Nathalie Corneau, Sabah Bidawid, Neda Nasheri
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2180-9-226

Evaluation of the bacterial diversity among and within individual venous leg ulcers using bacterial tag-encoded FLX and Titanium amplicon pyrosequencing and metagenomic approaches
Cited by: 157
Author(s): Randall D. Wolcott, Viktoria Gontcharova, Yan-Yan Sun, Scot E. Dowd
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2180-12-221

The effect of training set on the classification of honey bee gut microbiota using the Naïve Bayesian Classifier
Cited by: 41
Author(s): Irene L. G. Newton, Guus Roeselers
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12866-019-1636-y

Characterization of a highly divergent Sugarcane mosaic virus from Canna indica L. by deep sequencing
Cited by: 3
Author(s): Yongqiang Li, Fei Xia, Yixuan Wang, Chenge Yan, Anning Jia, Yongjiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-016-0721-8

Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants
Cited by: 37
Author(s): Bryan P. Brown, Jennifer J. Wernegreen
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2180-12-150

Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India
Cited by: 40
Author(s): Basit Yousuf, Payal Sanadhya, Jitendra Keshri, Bhavanath Jha
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2180-11-81

Bacterial community diversity and variation in spray water sources and the tomato fruit surface
Cited by: 68
Author(s): Adriana Telias, James R. White, Donna M. Pahl, Andrea Ottesen, Christopher S. Walsh
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2180-11-77

Novel molecular markers of Chlamydia pecorum genetic diversity in the koala (Phascolarctos cinereus)
Cited by: 50
Author(s): J. Wallis Marsh, Avinash Kollipara, Peter Timms, Adam Polkinghorne
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2180-13-151

Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China
Cited by: 58
Author(s): Zhi Peng Li, Han Lu Liu, Guang Yu Li, Kun Bao, Kaiying Wang, Chao Xu, Yi Yang, Feiya Yang, André Denis G. Wright
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2180-12-S1-S10

Evidence of diversity and recombination in Arsenophonus symbionts of the Bemisia tabaci species complex
Cited by: 38
Author(s): Laurence Mouton, Magalie Thierry, Hélène Henri, Rémy Baudin, Olivier Gnankiné, Bernard Reynaud, Einat Zchori-Fein, Norbert Becker, Frédéric Fleury, Hélène Delatte
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2180-12-62

Multilocus genetics to reconstruct aeromonad evolution
Cited by: 46
Author(s): Frédéric Roger, Hélène Marchandin, Estelle Jumas‐Bilak, Angéli Kodjo, Brigitte Lamy
Software Mentions: 1
Published: over 12 years ago

10.1186/s12866-020-01790-y

Insight to shape of soil microbiome during the ternary cropping system of Gastradia elata
Cited by: 7
Author(s): Qing-Song Yuan, Jiao Xu, Wei-Ke Jiang, Xiaohong Ou, Hui Wang, Lanping Guo, Chao Xiao, Yanhong Wang, Xiao Wang, Chuan-Zhi Kang, Tao Zhou
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2180-9-210

The effect of the macrolide antibiotic tylosin on microbial diversity in the canine small intestine as demonstrated by massive parallel 16S rRNA gene sequencing
Cited by: 171
Author(s): Jan S. Suchodolski, Scot E. Dowd, Elias Westermarck, Jörg M. Steiner, Randy Wolcott, Thomas Spillmann, Jaana Harmoinen
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2180-14-43

Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae
Cited by: 41
Author(s): Anne A.M.J. Becker, Myriam Hesta, Joke Hollants, Geert Janssens, Geert Huys
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2180-12-55

The expression of one ankyrin pk2 allele of the WO prophage is correlated with the Wolbachia feminizing effect in isopods
Cited by: 24
Author(s): Samuel Pichon, Didier Bouchon, Chao Liu, Lanming Chen, Roger A. Garrett, Pierre Grève
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2180-8-129

Polymorphism, genetic exchange and intragenic recombination of the aureolysin gene among Staphylococcus aureusstrains
Cited by: 25
Author(s): Artur J. Sabat, Benedykt Władyka, Klaudia Kosowska-Shick, Hajo Grundmann, Jan Maarten van Dijl, Julia Kowal, Peter C. Appelbaum, Adam Dubin, Waleria Hryniewicz
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2229-10-149

Mechanisms of haplotype divergence at the RGA08 nucleotide-binding leucine-rich repeat gene locus in wild banana (Musa balbisiana)
Cited by: 22
Author(s): Franc-Christophe Baurens, Stéphanie Bocs, Mathieu Rouard, Takashi Matsumoto, Robert G. Miller, Marguerite Rodier-Goud, Didier Mbéguié-A-Mbéguié, Nabila Yahiaoui
Software Mentions: 1
Published: over 14 years ago

10.1186/s13104-018-3395-5

Characterization of the first complete genome sequence of an Impatiens necrotic spot orthotospovirus isolate from the United States and worldwide phylogenetic analyses of INSV isolates
Cited by: 4
Author(s): Keyan Zhao, Paolo Margaria, Cristina Rosa
Software Mentions: 1
Published: over 6 years ago

10.1186/s13104-016-1999-1

Sequence characterization, molecular phylogeny reconstruction and recombination analysis of the large RNA of Tomato spotted wilt virus (Tospovirus: Bunyaviridae) from the United States
Cited by: 6
Author(s): S. V. Ramesh, H. R. Pappu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12900-019-0104-0

Effect of low complexity regions within the PvMSP3α block II on the tertiary structure of the protein and implications to immune escape mechanisms
Cited by: 9
Author(s): Alebachew Messele Kebede, Fitsum G. Tadesse, Aklilu Feleke, Lemu Golassa, Endalamaw Gadisa
Software Mentions: 1
Published: over 5 years ago

10.1186/s12917-019-2060-0

Genetic and phylogenetic analyses of the first GIII.2 bovine norovirus in China
Cited by: 2
Author(s): Zhihai Shi, Wenjia Wang, Zhaoxue Xu, Xiaozhan Zhang, Yue Lan
Software Mentions: 1
Published: about 5 years ago

10.1186/s12917-021-02962-2

Rabbit haemorrhagic disease virus Lagovirus europaeus/GI.1d strain: genome sequencing, in vivo virus replication kinetics, and viral dose effect
Cited by: 3
Author(s): Clément Droillard, Evelyne Lemaitre, Michel Amelot, Yannick Blanchard, Alassane Keïta, Nicolas Eterradossi, Ghislaine Le Gall-Reculé
Software Mentions: 1
Published: over 3 years ago

10.1186/s12917-020-02301-x

Molecular survey of duck circovirus infection in poultry in southern and southwestern China during 2018 and 2019
Cited by: 12
Author(s): Hao Líu, Li Xia Li, Wen Chao Sun, Ning Shi, Xiu Tao Sun, Ning Jin, Xing Kui
Software Mentions: 1
Published: over 4 years ago

10.1186/s12917-020-02494-1

First report and genetic characterization of bovine torovirus in diarrhoeic calves in China
Cited by: 5
Author(s): Zhihai Shi, Wenjia Wang, Chaoxi Chen, Xiaozhan Zhang, Jing Wang, Zhaoxue Xu, Yue Lan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12917-017-1238-6

Molecular characterization of a novel Muscovy duck parvovirus isolate: evidence of recombination between classical MDPV and goose parvovirus strains
Cited by: 19
Author(s): Jian‐Ye Wang, Jueyi Ling, Zhixian Wang, Yu Huang, Jianzhong Zhu, Guoqiang Zhu
Software Mentions: 1
Published: about 7 years ago

10.1186/s12917-017-1188-z

The effect of storage at ambient temperature on the feline fecal microbiota
Cited by: 20
Author(s): Moran Tal, Adronie Verbrugghe, Diego E. Gómez, Charlotte Chau, J. Scott Weese
Software Mentions: 1
Published: over 7 years ago

10.1186/s12917-020-02466-5

Dietary fermented soybean meal replacement alleviates diarrhea in weaned piglets challenged with enterotoxigenic Escherichia coli K88 by modulating inflammatory cytokine levels and cecal microbiota composition
Cited by: 33
Author(s): Wenwen Wang, Yuan Wang, Xin Hao, Yuanxiao Duan, Zhen Meng, Xiaoping An, Jingwei Qi
Software Mentions: 1
Published: over 4 years ago

10.1186/s12917-019-1890-0

Impact of alignment algorithm on the estimation of pairwise genetic similarity of porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 4
Author(s): Marie-Ève Lambert, Julie Arsenault, Benjamin Delisle, Pascal Audet, Zvonimir Poljak, Sylvie D’Allaire
Software Mentions: 1
Published: over 5 years ago

10.1186/1746-6148-10-108

Phylogeny of Mycoplasma bovisisolates from Hungary based on multi locus sequence typing and multiple-locus variable-number tandem repeat analysis
Cited by: 28
Author(s): Kinga M. Sulyok, Zsuzsa Kreizinger, Lilla Fekete, Szilárd Jánosi, Nóra Schweitzer, Ibolya Turcsányi, László Makrai, Károly Erdélyi, Miklós Gyuranecz
Software Mentions: 1
Published: over 10 years ago

10.1186/1746-6148-8-90

Effect of high contents of dietary animal-derived protein or carbohydrates on canine faecal microbiota
Cited by: 61
Author(s): Ingrid Hang, Teemu Rinttilä, Jürgen Zentek, Anu Kettunen, Susanna Alaja, Juha Apajalahti, Jaana Harmoinen, Willem M. de Vos, Thomas Spillmann
Software Mentions: 1
Published: over 12 years ago

10.1186/s12917-020-02467-4

Molecular epidemiology and genome analysis of feline morbillivirus in household and shelter cats in Thailand
Cited by: 8
Author(s): Surangkanang Chaiyasak, Chutchai Piewbang, Anudep Rungsipipat, Somporn Techangamsuwan
Software Mentions: 1
Published: over 4 years ago

10.1007/s10532-017-9811-z

Anaerobic degradation of 1-methylnaphthalene by a member of the Thermoanaerobacteraceae contained in an iron-reducing enrichment culture
Cited by: 32
Author(s): Sviatlana Marozava, Housna Mouttaki, Hubert Müller, Nidal Abu Laban, Alexander J. Probst, Rainer U. Meckenstock
Software Mentions: 1
Published: almost 7 years ago

10.1093/bioinformatics/btt657

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences
Cited by: 44
Author(s): João F. Matias Rodrigues, Christian von Mering
Software Mentions: 1
Published: about 11 years ago

10.1186/0717-6287-47-67

Acidobacteriaappear to dominate the microbiome of two sympatric Caribbean Sponges and one Zoanthid
Cited by: 19
Author(s): Aileen O’Connor-Sánchez, Adán J Rivera-Domínguez, César De los Santos-Briones, Lluvia Korynthia López-Aguiar, Yuri J. Peña–Ramírez, Alejandra Prieto-Davó
Software Mentions: 1
Published: almost 10 years ago

10.3390/biology2010356

The Effect of Freeze-Thaw Conditions on Arctic Soil Bacterial Communities
Cited by: 31
Author(s): Niraj Kumar, Paul Grogan, Haiyan Chu, Casper T. Christiansen, Virginia K. Walker
Software Mentions: 1
Published: over 11 years ago

10.3390/biology10050397

Assessment of 16S rRNA Gene-Based Phylogenetic Diversity of Archaeal Communities in Halite-Crystal Salts Processed from Natural Saharan Saline Systems of Southern Tunisia
Cited by: 6
Author(s): Afef Najjari, Panagiota Stathopoulou, Khaled Elmnasri, Faten Hasnaoui, Inès Zidi, Haïtham Sghaier, Hadda Ouzari, Ameur Chérif, George Tsiamis
Software Mentions: 1
Published: over 3 years ago

10.1155/2014/189590

Mining Seasonal Marine Microbial Pattern with Greedy Heuristic Clustering and Symmetrical Nonnegative Matrix Factorization
Cited by: 0
Author(s): Fei Liu, Shao-Wu Zhang, Ze-Gang Wei, Wei Chen, Chen Zhou
Software Mentions: 1
Published: almost 11 years ago

10.1155/2020/4707538

Molecular Epidemiology of GI.3 Norovirus Outbreaks from Acute Gastroenteritis Surveillance System in Taiwan, 2015–2019
Cited by: 10
Author(s): Shu-Chun Chiu, Jia-Kai Hsu, Szu-Chieh Hu, Ching-Yi Wu, Ying-Chin Wang, Jer-Huei Lin
Software Mentions: 1
Published: almost 5 years ago

10.1155/2017/2978718

Tracking the Origin and Deciphering the Phylogenetic Relationship of Porcine Epidemic Diarrhea Virus in Ecuador
Cited by: 8
Author(s): Maritza Barrera, Ana Garrido, María S Vaca, Danilo Granda, Alfredo Acosta, Lester J. Pérez
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13068-017-0871-4

Highly efficient methane generation from untreated microalgae biomass
Cited by: 58
Author(s): Виктор Классен, Olga Blifernez-Klassen, Daniel Wibberg, Anderson M. Winkler, Jörn Kalinowski, Clemens Posten, Olaf Kruse
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-014-0182-y

New steady-state microbial community compositions and process performances in biogas reactors induced by temperature disturbances
Cited by: 66
Author(s): Gang Luo, Davide De Francisci, Panagiotis Kougias, Laura Treu, Xinyu Zhu, Irini Angelidaki
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13068-018-1059-2

A novel β-glucosidase from Saccharophagus degradans 2-40T for the efficient hydrolysis of laminarin from brown macroalgae
Cited by: 18
Author(s): Dong Hyun Kim, Do Hyoung Kim, Sang Hyun Lee, Kyoung Heon Kim
Software Mentions: 1
Published: over 6 years ago

10.3390/life5021346

Toxic Cyanobacterial Bloom Triggers in Missisquoi Bay, Lake Champlain, as Determined by Next-Generation Sequencing and Quantitative PCR
Cited by: 22
Author(s): Nathalie Fortin, Valentina Muñoz-Ramos, David F. Bird, Benoît Lévesque, Lyle G. Whyte, Charles W. Greer
Software Mentions: 1
Published: over 9 years ago

10.1186/s12936-018-2535-7

Influence of midgut microbiota in Anopheles stephensi on Plasmodium berghei infections
Cited by: 29
Author(s): Devaiah Monnanda Kalappa, Pradeep Annamalai Subramani, Sowmya Kanchanahalli Basavanna, Susanta Kumar Ghosh, Varadharajan Sundaramurthy, Sreehari Uragayala, Satyanarayan Tiwari, Anupkumar R. Anvikar, Neena Valecha
Software Mentions: 1
Published: about 6 years ago

10.1186/s12936-016-1563-4

Size polymorphism and low sequence diversity in the locus encoding the Plasmodium vivax rhoptry neck protein 4 (PvRON4) in Colombian isolates
Cited by: 12
Author(s): Sindy P. Buitrago, Diego Garzón‐Ospina, Manuel A. Patarroyo
Software Mentions: 1
Published: about 8 years ago

10.1007/s00227-017-3235-5

Disruption of doubly uniparental inheritance of mitochondrial DNA associated with hybridization area of European Mytilus edulis and Mytilus trossulus in Norway
Cited by: 21
Author(s): Beata Śmietanka, Artur Burzyński
Software Mentions: 1
Published: about 7 years ago

10.3390/md12115425

Polyketide Synthases in the Microbiome of the Marine Sponge Plakortis halichondrioides: A Metagenomic Update
Cited by: 30
Author(s): Gerardo Della Sala, Thomas Hochmuth, Roberta Teta, Valeria Costantino, Alfonso Mangoni
Software Mentions: 1
Published: about 10 years ago

10.3390/md13106082

Investigation of Interspecies Interactions within Marine Micromonosporaceae Using an Improved Co-Culture Approach
Cited by: 31
Author(s): Navid Adnani, Emmanuel Vazquez-Rivera, Srikar N. Adibhatla, Gregory A. Ellis, D. C. Braun, Tim S. Bugni
Software Mentions: 1
Published: about 9 years ago

10.3390/ma13214922

Metal Accumulation Using a Bacterium (K-142) Identified from Environmental Microorganisms by the Screening of Au Nanoparticles Synthesis
Cited by: 1
Author(s): Yiting Li, Michio Suzuki
Software Mentions: 1
Published: about 4 years ago

10.1590/0074-02760150436

The microbiological signature of human cutaneous leishmaniasis lesions exhibits restricted bacterial diversity compared to healthy skin
Cited by: 26
Author(s): Vanessa Riesz Salgado, Artur T. L. Queiroz, Sabri Saeed Sanabani, Camila I. de Oliveira, Edgar M. Carvalho, Jackson Maurício Lopes Costa, Manoel Barral‐Netto, Aldina Barral
Software Mentions: 1
Published: over 8 years ago

10.1186/1475-2859-5-16

Performances and microbial features of an aerobic packed-bed biofilm reactor developed to post-treat an olive mill effluent from an anaerobic GAC reactor
Cited by: 12
Author(s): Lorenzo Bertin, Maria Chiara Colao, Maurizio Ruzzi, Léonardo Marchetti, Fabio Fava
Software Mentions: 1
Published: over 18 years ago

10.1186/1475-2859-10-28

Lactococcus lactis M4, a potential host for the expression of heterologous proteins
Cited by: 27
Author(s): Nanyan Noreen, Wei Yeng Hooi, Ali Baradaran, Rosfarizan Mohamad, Chin Chin Sieo, Illias Rosli, Khatijah Yusoff, Abdul Rahim Raha
Software Mentions: 1
Published: over 13 years ago

10.1264/jsme2.ME11270

Actinobacteria Associated with the Marine Sponges Cinachyra sp., Petrosia sp., and Ulosa sp. and Their Culturability
Cited by: 13
Author(s): Shams Tabrez Khan, Motoki Takagi, Kazuo Shin‐ya
Software Mentions: 1
Published: almost 13 years ago

10.1264/jsme2.ME15187

Effects of Land Use Changes from Paddy Fields on Soil Bacterial Communities in a Hilly and Mountainous Area
Cited by: 7
Author(s): Rokunuzzaman, Yuito Ueda, Li Chen, Sota Tanaka, Kouhei Ohnishi
Software Mentions: 1
Published: almost 9 years ago

10.1264/jsme2.ME15146

Morphological, Physiological, and Taxonomic Characterization of Actinobacterial Isolates Living as Endophytes of Cacao Pods and Cacao Seeds
Cited by: 19
Author(s): Romaric Armel Mouafo Tchinda, Thaddée Boudjeko, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Éric Tsala, Ernest Monga, Carole Beaulieu
Software Mentions: 1
Published: almost 9 years ago

10.1264/jsme2.ME16099

Bacterial Communities Associated with Different Anthurium andraeanum L. Plant Tissues
Cited by: 22
Author(s): Yohanna Sarria-Guzmán, Yosef Chávez-Romero, Selene Gómez-Acata, Joaquín A. Montes-Molina, Eleacin Morales-Salazar, Luc Dendooven, Yendi E. Navarro‐Noya
Software Mentions: 1
Published: almost 9 years ago

10.1264/jsme2.ME11347

Carbonate-Dissolving Bacteria from ‘Miliolite’, a Bioclastic Limestone, from Gopnath, Gujarat, Western India
Cited by: 11
Author(s): Gangavarapu Subrahmanyam, Ravi Vaghela, Nilesh Bhatt, G. Archana
Software Mentions: 1
Published: almost 13 years ago

10.1264/jsme2.ME20137

Community Analysis-based Screening of Plant Growth-promoting Bacteria for Sugar Beet
Cited by: 14
Author(s): Kazuyuki Okazaki, Hirohito Tsurumaru, Megumi Hashimoto, Hiroyuki Takahashi, Takashi Okubo, Takuji Ohwada, Kiwamu Minamisawa, Seishi Ikeda
Software Mentions: 1
Published: almost 4 years ago

10.1099/mgen.0.000381

Microevolution in the major outer membrane protein OmpA of Acinetobacter baumannii
Cited by: 15
Author(s): Andrea Viale, Benjamin A. Evans
Software Mentions: 1
Published: over 4 years ago

10.1186/2042-5783-4-2

A systematic search for discriminating sites in the 16S ribosomal RNA gene
Cited by: 16
Author(s): Hilde Vinje, Trygve Almøy, Kristian Hovde Liland, Lars Snipen
Software Mentions: 1
Published: almost 11 years ago

10.1002/mbo3.708

Effect of dietary fiber levels on bacterial composition with age in the cecum of meat rabbits
Cited by: 9
Author(s): Zhenyu Wu, Hailiang Zhou, Fuchang Li, Nan-bin Zhang, Yanli Zhu
Software Mentions: 1
Published: over 6 years ago

10.1002/mbo3.241

Microbial diversity and abundance in the Xinjiang Luliang long‐term water‐flooding petroleum reservoir
Cited by: 71
Author(s): Peike Gao, Huimei Tian, Guoqiang Li, Hongwen Sun, Ting Ma
Software Mentions: 1
Published: almost 10 years ago

10.1002/mbo3.36

Abundance and short‐term temporal variability of fecal microbiota in healthy dogs
Cited by: 79
Author(s): José F. García-Mazcorro, Scot E. Dowd, Jeffrey Poulsen, Jörg M. Steiner, Jan S. Suchodolski
Software Mentions: 1
Published: about 12 years ago

10.1128/MRA.01636-18

Bacterial Diversity Based on a 16S rRNA Gene Amplicon Data Set from a High-Altitude Crater Lake and Glacial Samples of the Iztaccihuatl Volcanic Complex (Mexico)
Cited by: 3
Author(s): Rosa Paulina Calvillo‐Medina, Juan Pablo Reyes‐Grajeda, Vicente D. Moreno-Andrade, Luis Barba‐Escoto, Victor Bautista-de Lucio, George H. Jones, Juan Campos-Guillén
Software Mentions: 1
Published: over 5 years ago

10.1128/MRA.00686-20

Draft Genome Sequences of 15 Bacterial Species Constituting the Stable Defined Intestinal Microbiota of the GM15 Gnotobiotic Mouse Model
Cited by: 2
Author(s): Céline Elie, Alban Mathieu, Adrien Saliou, Adrien Villain, Marion Darnaud, François Leulier, Andrea Tamellini
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.01385-19

Coding-Complete Genome Sequence of a Recombinant Human Norovirus Strain Identified as Subtype GII.p12_GII.3
Cited by: 2
Author(s): Byung Joo Park, Hee-Seop Ahn, Sang-Hoon Han, Hyeon‐Jeong Go, Eu‐Lim Lyoo, Changsun Choi, Jinjong Myoung, Joong‐Bok Lee, Seung‐Yong Park, Chang‐Seon Song, Sang‐Won Lee, In‐Soo Choi
Software Mentions: 1
Published: almost 5 years ago

Projects: cran: RDP

Papers Mentioning RDP 1,243