Ecosyste.ms: Papers

10.3390/s21113698

Video Slice: Image Compression and Transmission for Agricultural Systems
Cited by: 8
Author(s): Takaaki Kawai
Software Mentions: 1
Published: over 3 years ago

10.1186/2193-1801-3-614

Sequence exploration reveals information bias among molecular markers used in phylogenetic reconstruction for Colletotrichum species
Cited by: 3
Author(s): Sephra N. Rampersad, Fazeeda N. Hosein, Christine V. F. Carrington
Software Mentions: 1
Published: about 10 years ago

10.1186/1944-3277-10-11

Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters
Cited by: 11
Author(s): Huan Chen, Lauren Brinkac, Pamela Mishra, Nan Li, Despoina S. Lymperopoulou, Tamar L. Dickerson, Nadine Gordon-Bradley, Henry N. Williams, Jonathan H. Badger
Software Mentions: 1
Published: over 9 years ago

10.1186/s40793-015-0062-5

Metagenomic analysis of planktonic microbial consortia from a non-tidal urban-impacted segment of James River
Cited by: 23
Author(s): Bonnie L. Brown, Rebecca LePrell, Rima B. Franklin, Maria C. Rivera, Francine M. Cabral, Hugh L. Eaves, Vicki Gardiakos, Kevin P. Keegan, Timothy L. King
Software Mentions: 1
Published: about 9 years ago

10.1186/s40793-015-0086-x

Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
Cited by: 11
Author(s): Anja Poehlein, Rolf Daniel, Diliana D. Simeonova
Software Mentions: 1
Published: about 9 years ago

10.1186/s40793-016-0154-x

Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil
Cited by: 3
Author(s): Ana Botelho, Maiana O. C. Costa, Cristiana Ossaille Beltrame, Fabienne Antunes Ferreira, Marina Farrel Cortês, Paula Terra Bandeira, Nicholas CB Lima, Rangel Celso Souza, Luiz Gonzaga Paula de Almeida, Ana Tereza Ribeiro de Vasconcelos, Marisa Fabiana Nicolás, Agnes Marie Sá Figueiredo
Software Mentions: 1
Published: over 8 years ago

10.1186/s40793-016-0213-3

Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge
Cited by: 8
Author(s): Lena Schaffert, Andreas Albersmeier, Anderson M. Winkler, Jörn Kalinowski, Sergey B. Zotchev, Christian Rückert
Software Mentions: 1
Published: almost 8 years ago

10.7150/thno.47746

<i>Panax notoginseng</i> saponins modulate the gut microbiota to promote thermogenesis and beige adipocyte reconstruction <i>via</i> leptin-mediated AMPKα/STAT3 signaling in diet-induced obesity
Cited by: 65
Author(s): Yu Xu, Ning Wang, Hor‐Yue Tan, Sha Li, Cheng Zhang, Zhangjin Zhang, Yibin Feng
Software Mentions: 1
Published: almost 5 years ago

10.1111/tbed.13555

A recombination between two Type 1 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV‐1) vaccine strains has caused severe outbreaks in Danish pigs
Cited by: 32
Author(s): Lise Kirstine Kvisgaard, Charlotte Sonne Kristensen, Pia Ryt-Hansen, Kasper Pedersen, Tomasz Stadejek, Ramona Trebbien, Lars Ole Andresen, Lars Erik Larsen
Software Mentions: 1
Published: over 4 years ago

10.1038/s41398-019-0571-x

Abnormal composition of gut microbiota is associated with resilience versus susceptibility to inescapable electric stress
Cited by: 61
Author(s): Kai Zhang, Yūkō Fujita, Lijia Chang, Youge Qu, Yaoyu Pu, Siming Wang, Yukihiko Shirayama, Kenji Hashimoto
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.02494-18

Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes
Cited by: 50
Author(s): Pedro González-Torres, Francisco Rodríguez, Josefa Antón, Toni Gabaldón
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00955-19

Modification of the Gastric Mucosal Microbiota by a Strain-Specific Helicobacter pylori Oncoprotein and Carcinogenic Histologic Phenotype
Cited by: 19
Author(s): Jennifer M. Noto, Joseph P. Zackular, Matthew G. Varga, Alberto Delgado, Judith Romero–Gallo, Matthew Scholz, M. Blanca Piazuelo, Eric P. Skaar, Richard M. Peek
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00387-16

Effects of Organic Amendments on Microbiota Associated with the Culex nigripalpus Mosquito Vector of the Saint Louis Encephalitis and West Nile Viruses
Cited by: 22
Author(s): Dagne Duguma, Michael W. Hall, Chelsea T. Smartt, Josh D. Neufeld
Software Mentions: 1
Published: almost 8 years ago

10.1128/mSystems.00246-20

Viral Ecogenomics of Arctic Cryopeg Brine and Sea Ice
Cited by: 20
Author(s): Zhi-Ping Zhong, Josephine Z. Rapp, James Wainaina, Natalie Solonenko, Heather Maughan, Shelly D. Carpenter, Zachary S. Cooper, Ho Bin Jang, Benjamin Bolduc, Jody W. Deming, Matthew B. Sullivan
Software Mentions: 1
Published: over 4 years ago

10.1186/s13046-016-0471-3

RNA virus receptor Rig-I monitors gut microbiota and inhibits colitis-associated colorectal cancer
Cited by: 40
Author(s): Houbao Zhu, Wangyang Xu, Zhiqiang Hu, Hongxin Zhang, Yan Shen, Lu Shen, Chaochun Wei, Zhugang Wang
Software Mentions: 1
Published: almost 8 years ago

10.1155/2016/4320412

The Bacteriomes of Ileal Mucosa and Cecal Content of Broiler Chickens and Turkeys as Revealed by Metagenomic Analysis
Cited by: 14
Author(s): Shan Wei, M. S. Lilburn, Zhongtang Yu
Software Mentions: 1
Published: almost 9 years ago

10.1007/s11695-019-04328-y

Alterations of Serum Uric Acid Level and Gut Microbiota After Roux-en-Y Gastric Bypass and Sleeve Gastrectomy in a Hyperuricemic Rat Model
Cited by: 17
Author(s): Cunlong Lu, Yu Liu, Long Li, Ying Kong, Tao Shi, Hai Xiao, Shougen Cao, Houxin Zhu, Zequn Li, Yanbing Zhou
Software Mentions: 1
Published: over 4 years ago

10.1002/jmv.25636

Typical epidemiology of respiratory virus infections in a Brazilian slum
Cited by: 22
Author(s): Luiz Gustavo Bentim Góes, Rodrigo Melim Zerbinati, Adriana Fumie Tateno, Andréa Vieira de Souza, Fabian Ebach, Victor M. Corman, Carlos Alberto Moreira-Filho, Edison Luiz Durigon, Luiz Vicente Ribeiro Ferreira da Silva Filho, Jan Felix Drexler
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.04550

Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite
Cited by: 69
Author(s): Mark McMullan, Anastasia Gardiner, Kate Bailey, Eric Kemen, Ben J. Ward, Volkan Çevik, Alexandre Robert-Seilaniantz, Torsten Schultz-Larsen, Alexi L. Balmuth, Eric B. Holub, Cock van Oosterhout, Jonathan D. G. Jones
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.04634

Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance
Cited by: 72
Author(s): Nicholas A. Bokulich, Jordyn Bergsveinson, Barry Ziola, David A. Mills
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.14552

Mitochondrial genetic diversity, selection and recombination in a canine transmissible cancer
Cited by: 48
Author(s): Andrea Strakova, Máire Ní Leathlobhair, Guodong Wang, Tingting Yin, Ilona Airikkala-Otter, Janice L Allen, Karen M Allum, Leontine Bansse-Issa, Jocelyn Bisson, Artemio Castillo Domracheva, Karina Ferreira de Castro, Anne M Corrigan, Hugh R Cran, Jane T Crawford, Stephen M Cutter, Laura Keenan, Edward M Donelan, Ibikunle A Faramade, Erika Flores Reynoso, Eleni Fotopoulou, Skye N Fruean, Fanny Gallardo-Arrieta, Olga Glebova, Rodrigo F Häfelin Manrique, Joaquim Henriques, Natalia A. Ignatenko, Debbie Koenig, Marta Lanza-Perea, Remo Lobetti, Adriana M Lopez Quintana, Thibault Losfelt, Gabriele Marino, Iñigo Martincorena, Simón Martínez Castañeda, Mayra F Martínez-López, Michael J. Meyer, Berna Nakanwagi, Andrigo B. De Nardi, Winifred Neunzig, Sally J Nixon, Marsden M Onsare, Antonio Ortega‐Pacheco, Maria C. Peleteiro, Ruth J. Pye, John F Reece, Jose Rojas Gutierrez, Haleema Sadia, Sheila K. Schmeling, Olga Shamanova, Richard K Ssuna, Audrey E Steenland-Smit, Alla Svitich, Ismail Thoya Ngoka, Bogdan Alexandru Vițălaru, Anna P de Vos, J. P. de Vos, Oliver Walkinton, David C. Wedge, Alvaro Wehrle-Martinez, Mirjam G van der Wel, Sophie Ae Widdowson, Elizabeth P. Murchison
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms17060888

Molecular Characterization of the Complete Genome of Three Basal-BR Isolates of Turnip mosaic virus Infecting Raphanus sativus in China
Cited by: 15
Author(s): Fu-xiang Zhu, Yanfa Sun, Yan Wang, Hongyu Pan, Fengting Wang, Xianghui Zhang, Yanhua Zhang, Jinliang Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18040737

Identification of Novel A2/C2 Inter-Genotype Recombinants of Hepatitis B Virus from a Korean Chronic Patient Co-Infected with Both Genotype A2 and C2
Cited by: 4
Author(s): So Young Lee, Seung Hee Lee, Ji Eun Kim, Hong Kim, Ki-Jeong Kim, Yoon Hoh Kook, Bum Joon Kim
Software Mentions: 1
Published: over 7 years ago

10.2174/1874357901711010049

Deep Sequencing Details the Cross-over Map of Chimeric Genes in Two Porcine Reproductive and Respiratory Syndrome Virus Infectious Clones
Cited by: 0
Author(s): Nanhua Chen, Ranjni Jagdish Chand, Raymond R. R. Rowland
Software Mentions: 1
Published: over 7 years ago

10.1128/JVI.00620-19

Introduction and Dispersal of Sindbis Virus from Central Africa to Europe
Cited by: 35
Author(s): Jiaxin Ling, Teemu Smura, Jan O. Lundström, John H.‐O. Pettersson, Tarja Sironen, Olli Vapalahti, Åke Lundkvist, Jenny C. Hesson
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12092621

Can the FUT 2 Gene Variant Have an Effect on the Body Weight of Patients Undergoing Bariatric Surgery?—Preliminary, Exploratory Study
Cited by: 1
Author(s): Natalia Komorniak, Alexandra Martynova–Van Kley, Armen Nalian, Wiktoria Wardziukiewicz, Karolina Skonieczna-Żydecka, Daniel Styburski, Joanna Palma, Bartosz Kowalewski, Krzysztof Kaseja, Ewa Stachowska
Software Mentions: 1
Published: about 4 years ago

10.3390/nu12071917

A Novel Non-Digestible, Carrot-Derived Polysaccharide (cRG-I) Selectively Modulates the Human Gut Microbiota while Promoting Gut Barrier Integrity: An Integrated In Vitro Approach
Cited by: 39
Author(s): Pieter Van den Abbeele, Lynn Verstrepen, Jonas Ghyselinck, Ruud Albers, Massimo Marzorati, Annick Mercenier
Software Mentions: 1
Published: over 4 years ago

10.3390/nu12092508

The Effect of Voluntary Exercise on Gut Microbiota in Partially Hydrolyzed Guar Gum Intake Mice under High-Fat Diet Feeding
Cited by: 13
Author(s): Takafumi Aoki, Eri Oyanagi, Chihiro Watanabe, Nanako Kobiki, Suzuka Miura, Yuka Yokogawa, Hiromi Kitamura, Fusako Teramoto, Michael J. Kremenik, Hiromi Yano
Software Mentions: 1
Published: over 4 years ago

10.3390/nu11092170

Effect of Repeated Consumption of Partially Hydrolyzed Guar Gum on Fecal Characteristics and Gut Microbiota: A Randomized, Double-Blind, Placebo-Controlled, and Parallel-Group Clinical Trial
Cited by: 37
Author(s): Zenta Yasukawa, Ryo Inoüe, Makoto Ozeki, Tsutomu Ōkubo, Tomohisa Takagi, Akira Honda, Yuji Naito
Software Mentions: 1
Published: about 5 years ago

10.3390/nu12102996

Changes in the Gut Microbiota are Associated with Hypertension, Hyperlipidemia, and Type 2 Diabetes Mellitus in Japanese Subjects
Cited by: 32
Author(s): Tomohisa Takagi, Yuji Naito, Saori Kashiwagi, Kazuhiko Uchiyama, Katsura Mizushima, Kazuhiro Kamada, Takeshi Ishikawa, Ryo Inoüe, Kayo Okuda, Yoshimasa Tsujimoto, Hiromu Ohnogi, Yoshito Itoh
Software Mentions: 1
Published: about 4 years ago

10.3390/nu13020507

The Gut Microbiome and Metabolomics Profiles of Restricting and Binge-Purging Type Anorexia Nervosa
Cited by: 22
Author(s): Alessio Maria Monteleone, Jacopo Troisi, Gloria Serena, Alessio Fasano, Riccardo Dalle Grave, Giammarco Cascino, Francesca Marciello, Simona Calugi, Giovanni Scala, Giulio Corrivetti, Palmiero Monteleone
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu11122919

Rice Endosperm Protein Administration to Juvenile Mice Regulates Gut Microbiota and Suppresses the Development of High-Fat Diet-Induced Obesity and Related Disorders in Adulthood
Cited by: 19
Author(s): Yuki Higuchi, Michihiro Hosojima, Hideyuki Kabasawa, Shoji Kudoh, Sawako Goto, Koji Toba, Ryohei Kaseda, Takahiro Tanaka, Nobuto Kitamura, Hayato Takihara, Shujiro Okuda, Masayuki Taniguchi, Hitoshi Arao, Ichiei Narita, Akihiko Saito
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu13082814

Bifidobacterium animalis subsp. lactis BB-12 Protects against Antibiotic-Induced Functional and Compositional Changes in Human Fecal Microbiome
Cited by: 14
Author(s): Daniel Merenstein, Claire M. Fraser, Robert Roberts, Tian Liu, Silvia Grant-Beurmann, Tina P. Tan, Keisha Herbin Smith, Tom Cronin, Olivia A Martin, Mary Ellen Sanders, Sean C. Lucan, Maureen A. Kane
Software Mentions: 1
Published: over 3 years ago

10.3390/v11060488

Recombinant Strains of Human Parechovirus in Rural Areas in the North of Brazil
Cited by: 9
Author(s): Élcio Leal, Adriana Luchs, Flávio Augusto de Pádua Milagres, Shirley Vasconcelos Komninakis, Danielle Elise Gill, Márcia Cristina Alves Brito Sayão Lobato, Rafael Brustulin, Rogério Togisaki das Chagas, Maria de Fátima Neves dos Santos Abrão, Cássia Vitória de Deus Alves Soares, Fabiola Villanova, Steven S. Witkin, Xutao Deng, Éster Cerdeira Sabino, Eric Delwart, Antônio Charlys da Costa
Software Mentions: 1
Published: over 5 years ago

10.3390/nu13020688

Gut Microbiome-Based Analysis of Lipid A Biosynthesis in Individuals with Autism Spectrum Disorder: An In Silico Evaluation
Cited by: 11
Author(s): Abdulkadir Yusif Maigoro, Soo Jin Lee
Software Mentions: 1
Published: almost 4 years ago

10.3390/v11060535

Emerging Novel GII.P16 Noroviruses Associated with Multiple Capsid Genotypes
Cited by: 47
Author(s): Leslie Barclay, Jennifer L. Cannon, Mary E. Wikswo, Annie Phillips, Hannah Browne, Anna Montmayeur, Roman L. Tatusov, Rachel M Burke, Aron J. Hall, Jan Vinjé
Software Mentions: 1
Published: over 5 years ago

10.3390/v11070654

Evidence of Intragenic Recombination in African Horse Sickness Virus
Cited by: 7
Author(s): Harry Ngoveni, Antoinette van Schalkwyk, Otto Koekemoer
Software Mentions: 1
Published: over 5 years ago

10.3390/v11070641

The First Co-Opted Endogenous Foamy Viruses and the Evolutionary History of Reptilian Foamy Viruses
Cited by: 12
Author(s): Pakorn Aiewsakun, Peter Simmonds, Aris Katzourakis
Software Mentions: 1
Published: over 5 years ago

10.3390/v11070644

A Lineage of Begomoviruses Encode Rep and AC4 Proteins of Enigmatic Ancestry: Hints on the Evolution of Geminiviruses in the New World
Cited by: 12
Author(s): Sandra Iliana Torres-Herrera, Angélica Romero-Osorio, Oscar A. Moreno‐Valenzuela, Guillermo Pastor-Palacios, Yair Cárdenas-Conejo, Jorge Humberto Ramírez-Prado, Lina Riego-Ruíz, Yereni Minero-García, Salvador Ambríz-Granados, Gerardo R. Argüello‐Astorga
Software Mentions: 1
Published: over 5 years ago

10.3390/v11080752

Analysis of Synonymous Codon Usage Bias in Potato Virus M and Its Adaption to Hosts
Cited by: 36
Author(s): Zhen He, Haifeng Gan, Xinyan Liang
Software Mentions: 1
Published: over 5 years ago

10.3390/v11090857

Highly Divergent Genetic Variants of Soricid-Borne Altai Virus (Hantaviridae) in Eurasia Suggest Ancient Host-Switching Events
Cited by: 11
Author(s): Hae Ji Kang, Se Hun Gu, L. N. Yashina, Joseph A. Cook, Richard Yanagihara
Software Mentions: 1
Published: about 5 years ago

10.3390/v11090875

Identification of Two Porcine Reproductive and Respiratory Syndrome Virus Variants Sharing High Genomic Homology but with Distinct Virulence
Cited by: 20
Author(s): Nanhua Chen, Mengxue Ye, Yibo Huang, Shuai Li, Yanzhao Xiao, Xinshuai Li, Shubin Li, Xiangdong Li, Xiaofang Yu, Kegong Tian, Jianzhong Zhu
Software Mentions: 1
Published: about 5 years ago

10.3390/v11090843

Presence of a Novel Subtype of Bovine Hepacivirus in China and Expanded Classification of Bovine Hepacivirus Strains Worldwide into 7 Subtypes
Cited by: 12
Author(s): Gang Lu, Jiajun Ou, Jiawei Zhao, Shoujun Li
Software Mentions: 1
Published: about 5 years ago

10.3390/v11100894

The Canine Morbillivirus Strain Associated with An Epizootic in Caspian Seals Provides New Insights into the Evolutionary History of this Virus
Cited by: 19
Author(s): Wendy K Jo, Martin C. Peters, Aidyn Kydyrmanov, Marco W. G. van de Bildt, Thijs Kuiken, Albert D. M. E. Osterhaus, Martin Ludlow
Software Mentions: 1
Published: about 5 years ago

10.3390/v11100898

Genetic Analysis of Avian Coronavirus Infectious Bronchitis Virus in Yellow Chickens in Southern China over the Past Decade: Revealing the Changes of Genetic Diversity, Dominant Genotypes, and Selection Pressure
Cited by: 21
Author(s): Wen-Sheng Fan, Ning Tang, Zhihua Dong, Jiming Chen, Wen Zhang, Chuanzhi Zhao, Yining He, Meng Li, Cuilan Wu, Tianchao Wei, Teng Huang, Meilan Mo, Ping Wei
Software Mentions: 1
Published: about 5 years ago

10.3390/v11110982

Molecular and Biological Characterization of a New Strawberry Cytorhabdovirus
Cited by: 27
Author(s): Jana Fráňová, Jaroslava Přibylová, Igor Koloniuk
Software Mentions: 1
Published: about 5 years ago

10.3390/v11111071

Survey and Characterization of Jingmen Tick Virus Variants
Cited by: 36
Author(s): Ender Dinçer, Sabri Hacıoğlu, Sırrı Kar, Nergis Emanet, Annika Brinkmann, Andreas Nitsche, Aykut Özkul, Yvonne‐Marie Linton, Koray Ergünay
Software Mentions: 1
Published: about 5 years ago

10.3390/v11121131

Pediatric Infections by Human mastadenovirus C Types 2, 89, and a Recombinant Type Detected in Japan between 2011 and 2018
Cited by: 4
Author(s): Ken-Ichiro Takahashi, Gabriel González, Mariko Kobayashi, Nozomu Hanaoka, Michael J. Carr, Masami Konagaya, Naomi Nojiri, Miki Ogi, Tsuguto Fujimoto
Software Mentions: 1
Published: almost 5 years ago

10.3390/v11121094

Fowl Adenovirus (FAdV) Recombination with Intertypic Crossovers in Genomes of FAdV-D and FAdV-E, Displaying Hybrid Serological Phenotypes
Cited by: 32
Author(s): Anna Schachner, Gabriel González, Lukas Endler, Kimihito Ito, Michael Heß
Software Mentions: 1
Published: almost 5 years ago

10.3390/v12020246

Updating the Quarantine Status of Prunus Infecting Viruses in Australia
Cited by: 18
Author(s): Wycliff M. Kinoti, Narelle Nancarrow, Alison L. Dann, Brendan Rodoni, Fiona Constable
Software Mentions: 1
Published: almost 5 years ago

10.3390/v12020180

Genetic and Biological Diversity of Porcine Sapeloviruses Prevailing in Zambia
Cited by: 9
Author(s): Hayato Harima, Masahiro Kajihara, Edgar Simulundu, Eugene C Bwalya, Yongjin Qiu, Mao Isono, Kosuke Okuya, Gabriel González, Junya Yamagishi, Bernard M. Hang’ombe, Hirofumi Sawa, Aaron S. Mweene, Ayato Takada
Software Mentions: 1
Published: almost 5 years ago

10.1007/s13205-012-0097-x

Microbial community structure in a biogas digester utilizing the marine energy crop Saccharina latissima
Cited by: 19
Author(s): Phillip B. Pope, Vivekanand Vivekanand, Vincent G. H. Eijsink, Svein Jarle Horn
Software Mentions: 1
Published: about 12 years ago

10.1186/s13568-019-0848-8

Rumen fermentation and microbial community composition influenced by live Enterococcus faecium supplementation
Cited by: 21
Author(s): Lovelia L. Mamuad, Seon Ho Kim, Ashraf Ali Biswas, Zhongtang Yu, cho kwang-keun, Sang-Bum Kim, Kichoon Lee, Sang-Suk Lee
Software Mentions: 1
Published: over 5 years ago

10.1186/s13568-016-0188-x

Cellulolytic and proteolytic ability of bacteria isolated from gastrointestinal tract and composting of a hippopotamus
Cited by: 8
Author(s): Geomárcia Feitosa da Cruz Ramos, Patricia Ramos, Michel Rodrigo Zambrano Passarini, Marghuel Aparecida Vieira Silveira, Débora N. Okamoto, Lilian Caroline Gonçalves de Oliveira, Larissa Vieira Zezzo, Alyne Marem, Rafael Costa Santos Rocha, João Batista da Cruz, Luiz Juliano, Suzan Pantaroto de Vasconcellos
Software Mentions: 1
Published: over 8 years ago

10.1186/2191-0855-2-18

Phylogenetic and functional diversity of metagenomic libraries of phenol degrading sludge from petroleum refinery wastewater treatment system
Cited by: 47
Author(s): Cynthia C. Silva, Helen L. Hayden, Tim Sawbridge, Pauline M. Mele, Ricardo Henrique Krüger, Marili Villa Nova Rodrigues, Gustavo G.L. Costa, Ramon O. Vidal, Maíra Paula de Sousa, Audálio Rebelo Torres, Vânia Maria Junqueira Santiago, Valéria Maia de Oliveira
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13568-018-0553-z

Circulatory white spot syndrome virus in South-West region of Bangladesh from 2014 to 2017: molecular characterization and genetic variation
Cited by: 10
Author(s): Mohammad Anwar Siddique, Md. Inja-Mamun Haque, Santonu Kumar Sanyal, Anwar Hossain, Shuvro Prokash Nandi, A. S. M. Rubayet Ul Alam, Munawar Sultana, Mahmud Hasan, M. Anwar Hossain
Software Mentions: 1
Published: almost 7 years ago

10.1186/2191-0855-1-47

Could petroleum biodegradation be a joint achievement of aerobic and anaerobic microrganisms in deep sea reservoirs?
Cited by: 39
Author(s): Georgiana Feitosa da Cruz, Suzan Pantaroto de Vasconcellos, Célio F. F. Angolini, Bruna Martins Dellagnezze, Isabel Ns Garcia, Valéria Maia de Oliveira, Eugênio Vaz dos Santos Neto, Anita Jocelyne Marsaioli
Software Mentions: 1
Published: almost 13 years ago

10.14336/AD.2017.0902

The Role of Pulmonary and Systemic Immunosenescence in Acute Lung Injury
Cited by: 29
Author(s): Christina Brandenberger, Katharina Maria Kling, Marius Vital, Christian Mühlfeld
Software Mentions: 1
Published: almost 7 years ago

10.5713/ab.20.0601

Rumen bacteria influence milk protein yield of yak grazing on the Qinghai-Tibet plateau
Cited by: 8
Author(s): Qingshan Fan, Metha Wanapat, Fujiang Hou
Software Mentions: 1
Published: about 3 years ago

10.3390/ani10122230

Effects of Wheat Bran and Clostridium butyricum Supplementation on Cecal Microbiota, Short-Chain Fatty Acid Concentration, pH and Histomorphometry in Broiler Chickens
Cited by: 17
Author(s): Andor Molnár, Nikoletta Such, Valéria Farkas, László Pál, László Menyhárt, László Wagner, Ferenc Húsvéth, Károly Dublecz
Software Mentions: 1
Published: almost 4 years ago

10.3390/ani9110873

Transcriptome-Based Identification and Molecular Evolution of the Cytochrome P450 Genes and Expression Profiling under Dimethoate Treatment in Amur Stickleback (Pungitius sinensis)
Cited by: 6
Author(s): Jun Cao, Xiuzhu Cheng
Software Mentions: 1
Published: about 5 years ago

10.3390/ani11092741

Insights into the Genetic Evolution of Duck Hepatitis A Virus in Egypt
Cited by: 3
Author(s): Mohammed A. Rohaim, Rania F. El Naggar, Mohammed A. Abdelsabour, Basem A Ahmed, Mohamed M. Hamoud, Kawkab A. Ahmed, Osama K. Zahran, Muhammad Munir
Software Mentions: 1
Published: about 3 years ago

10.3390/ani9050233

Comparative Analysis of the aquaporin Gene Family in 12 Fish Species
Cited by: 13
Author(s): Jun Cao, Feng Shi
Software Mentions: 1
Published: over 5 years ago

10.3390/ani10030511

Dietary Supplementation with Compound Probiotics and Berberine Alters Piglet Production Performance and Fecal Microbiota
Cited by: 15
Author(s): Xiaoxiang Xu, Canyu Yang, Juan Chang, Ping Wang, Qingqiang Yin, Chaoqi Liu, Tong Gao, Xiaowei Dang, Fushan Lu
Software Mentions: 1
Published: over 4 years ago

10.3390/ani10010034

The MHC Class Ia Genes in Chenfu’s Treefrog (Zhangixalus chenfui) Evolved via Gene Duplication, Recombination, and Selection
Cited by: 2
Author(s): Chen Hu, Siqi Huang, Ye Jiang, Fuyao Han, Qingyong Ni, Yongfang Yao, Huailiang Xu, Saurabh Mishra, Mingwang Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3390/ani11040944

Genetic Heterogeneity among Chicken Infectious Anemia Viruses Detected in Italian Fowl
Cited by: 8
Author(s): Giulia Quaglia, Giulia Mescolini, Elena Catelli, Giacomo Berto, Filippo Muccioli, Caterina Lupini
Software Mentions: 1
Published: over 3 years ago

10.1007/s10482-018-1014-z

Inter- and intracellular colonization of Arabidopsis roots by endophytic actinobacteria and the impact of plant hormones on their antimicrobial activity
Cited by: 52
Author(s): Anne van der Meij, Joost Willemse, Martinus Schneijderberg, René Geurts, Jos M. Raaijmakers, Gilles P. van Wezel
Software Mentions: 1
Published: almost 7 years ago

10.1128/AEM.02627-17

The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies
Cited by: 348
Author(s): Jolinda Pollock, Laura Glendinning, Trong Wisedchanwet, Michael Watson
Software Mentions: 1
Published: over 6 years ago

10.1007/s00253-012-4082-4

Bacterial communities in different sections of a municipal wastewater treatment plant revealed by 16S rDNA 454 pyrosequencing
Cited by: 249
Author(s): Lin Ye, Tong Zhang
Software Mentions: 1
Published: over 12 years ago

10.1186/2046-9063-9-7

Molecular identification of microorganisms associated with the brine shrimp Artemia franciscana
Cited by: 25
Author(s): Misty R. Riddle, Bonnie K. Baxter, Brian J. Avery
Software Mentions: 1
Published: over 11 years ago

10.1007/s00705-017-3605-9

Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses
Cited by: 21
Author(s): Moritz Bömer, Ajith I. Rathnayake, Paul Visendi, Gonçalo Silva, Susan Seal
Software Mentions: 1
Published: about 7 years ago

10.1007/s00705-021-05111-0

Metagenomic analysis of nepoviruses: diversity, evolution and identification of a genome region in members of subgroup A that appears to be important for host range
Cited by: 4
Author(s): Jean-Michel Hily, Nils Poulicard, Julie Kubina, Jean-Sébastien Reynard, Anne-Sophie Spilmont, Marc Fuchs, Olivier Lemaire, Emmanuelle Vigne
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-7-265

A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Cited by: 100
Author(s): Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, Carla Kuiken, Bette T. Korber, Burkhard Morgenstern, Mario Stanke
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2105-12-473

Estimation of bacterial diversity using next generation sequencing of 16S rDNA: a comparison of different workflows
Cited by: 53
Author(s): Jorge Barriuso, José Ramón Valverde, Rafael P. Mellado
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12859-017-1894-3

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?
Cited by: 21
Author(s): Se‐Ran Jun, Trudy M. Wassenaar, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, David W. Ussery
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12859-018-2456-z

A statistical method to identify recombination in bacterial genomes based on SNP incompatibility
Cited by: 7
Author(s): Yi-Pin Lai, Thomas R. Ioerger
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-017-1670-4

A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy
Cited by: 130
Author(s): Xiang Gao, Huaiying Lin, Kashi Vishwanath Revanna, Qunfeng Dong
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-11-358

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission
Cited by: 11
Author(s): Wolfgang Hankeln, Pier Luigi Buttigieg, Dennis Fink, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner
Software Mentions: 1
Published: over 14 years ago

10.1186/s12859-018-2540-4

Rapid analysis of metagenomic data using signature-based clustering
Cited by: 2
Author(s): Timothy Chappell, Shlomo Geva, James M. Hogan, Flavia Huygens, Irani Rathnayake, Stephen Rudd, Wayne Kelly, Dimitri Perrin
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-11-114

OrgConv: detection of gene conversion using consensus sequences and its application in plant mitochondrial and chloroplast homologs
Cited by: 24
Author(s): Weilong Hao
Software Mentions: 1
Published: over 14 years ago

10.1186/s12859-015-0647-4

Comparing K-mer based methods for improved classification of 16S sequences
Cited by: 28
Author(s): Hilde Vinje, Kristian Hovde Liland, Trygve Almøy, Lars-Gustav Snipen
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-13-92

A comparative evaluation of sequence classification programs
Cited by: 102
Author(s): Adam L. Bazinet, Michael P. Cummings
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2105-12-182

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
Cited by: 68
Author(s): Surendra Kumar, Tor Carlsen, Bjørn-Helge Mevik, Pål Enger, Rakel Blaalid, Kamran Shalchian-Tabrizi, Håvard Kauserud
Software Mentions: 1
Published: over 13 years ago

10.1186/1741-7007-7-6

Evolution and diversity of Rickettsiabacteria
Cited by: 331
Author(s): Lucy A. Weinert, John H. Werren, Alexandre Aebi, Graham N. Stone, Francis M. Jiggins
Software Mentions: 1
Published: almost 16 years ago

10.1186/1741-7007-7-84

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
Cited by: 447
Author(s): Matthew Parks, Richard Cronn, Aaron Liston
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12862-021-01902-w

Phylodynamic and phylogeographic analysis of the complete genome of the West Nile virus lineage 2 (WNV-2) in the Mediterranean basin
Cited by: 4
Author(s): Haythem Srihi, Noureddine Chatti, Manel Ben M’hadheb-Gharbi, Jawhar Gharbi, N. Abid
Software Mentions: 1
Published: about 3 years ago

10.1186/s12862-021-01812-x

The strength of selection is consistent across both domains of the MHC class I peptide-binding groove in birds
Cited by: 5
Author(s): Piotr Minias, Ke He, Peter O. Dunn
Software Mentions: 1
Published: over 3 years ago

10.1186/s12862-019-1456-6

A genome-wide scan for genes under balancing selection in the plant pathogen Ralstonia solanacearum
Cited by: 20
Author(s): José A. García del Castillo, Spiros N. Agathos
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2148-13-82

Inferring the evolutionary histories of divergences in Hylobates and Nomascus gibbons through multilocus sequence data
Cited by: 32
Author(s): Yi-Chiao Chan, Christian Roos, Miho Inoue‐Murayama, Eiji Inoue, Chih-Chin Shih, Kurtis Jai‐Chyi Pei, Linda Vigilant
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2148-13-76

Hippo pathway genes developed varied exon numbers and coevolved functional domains in metazoans for species specific growth control
Cited by: 7
Author(s): Henan Zhu, Ziwei Zhou, Daxi Wang, Liu Wenyin, Huiping Zhu
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2148-9-13

Recombination in Glomus intraradices, a supposed ancient asexual arbuscular mycorrhizal fungus
Cited by: 93
Author(s): Daniel Croll, Ian R. Sanders
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2148-10-200

Evolutionary patterns at the RNase based gametophytic self - incompatibility system in two divergent Rosaceae groups (Maloideae and Prunus)
Cited by: 25
Author(s): Jorge Vieira, Pedro G. Ferreira, Bruno Aguiar, Nuno A. Fonseca, Cristina Vieira
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2148-7-54

Tandem gene arrays in Trypanosoma brucei: Comparative phylogenomic analysis of duplicate sequence variation
Cited by: 32
Author(s): Andrew P. Jackson
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2148-10-293

Evidence for positive selection in the gene fruitless in Anastrephafruit flies
Cited by: 17
Author(s): Iderval Sobrinho, Reinaldo Alves de Brito
Software Mentions: 1
Published: about 14 years ago

10.1186/s12862-019-1433-0

The evolution of S100A7: an unusual gene expansion in Myotis bats
Cited by: 8
Author(s): Ana Águeda-Pinto, L. Filipe C. Castro, Pedro J. Esteves
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2148-13-62

Rapid birth-and-death evolution of the xenobiotic metabolizing NAT gene family in vertebrates with evidence of adaptive selection
Cited by: 32
Author(s): Audrey Sabbagh, Julie Marin, Charlotte Veyssière, Émilie Lecompte, Sotiria Boukouvala, Estella S. Poloni, Pierre Darlu, Brigitte Crouau‐Roy
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2148-10-371

Evolutionary analysis of foot-and-mouth disease virus serotype SAT 1 isolates from east africa suggests two independent introductions from southern africa
Cited by: 27
Author(s): Abraham Sangula, Graham J. Belsham, Vincent B. Muwanika, Rasmus Heller, Sheila N. Balinda, Charles Masembe, Hans R. Siegismund
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2148-13-113

Evolution by selection, recombination, and gene duplication in MHC class I genes of two Rhacophoridae species
Cited by: 33
Author(s): Mo Zhao, Yongzhen Wang, Hang Shen, Chenliang Li, Chen Cheng, Zhenhua Luo, Hua Wu
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2148-12-74

One misdated sequence of rabbit hemorrhagic disease virus prevents accurate estimation of its nucleotide substitution rate
Cited by: 16
Author(s): Alan C. Hicks, Siobain Duffy
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2148-12-228

East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus
Cited by: 45
Author(s): Alexandre De Bruyn, Julie Villemot, Pierre Lefeuvre, Emilie Villar, Murielle Hoareau, Mireille Aurélie Harimalala, Anli Liachouroutu Abdoul-Karime, Chadhouliati Abdou-Chakour, Bernard Reynaud, Gordon William Harkins, Arvind Varsani, Darren P. Martin, Jean‐Michel Lett
Software Mentions: 1
Published: almost 12 years ago