Ecosyste.ms: Papers

10.3390/genes8110334

Homoeologous Recombination of the V1r1-V1r2 Gene Cluster of Pheromone Receptors in an Allotetraploid Lineage of Teleosts
Cited by: 0
Author(s): Lei Zhong, Weimin Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/genes11070764

Development of a Multilocus Sequence Typing Scheme for Giardia intestinalis
Cited by: 5
Author(s): Adriana Higuera, Marina Muñoz, Myriam Consuelo López, Patricia Reyes, Plutarco Urbano, Oswaldo Alberto Romero Villalobos, Juan David Ramírez
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11080910

Retrospective Analysis Shows That Most RHDV GI.1 Strains Circulating Since the Late 1990s in France and Sweden Were Recombinant GI.3P–GI.1d Strains
Cited by: 7
Author(s): Joana Abrantes, Ana M. Lopes, Evelyne Lemaitre, Harri Ahola, Fereshteh Banihashem, Clément Droillard, Stéphane Marchandeau, Pedro J. Esteves, Aleksija Neimanis, Ghislaine Le Gall-Reculé
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11091085

Genomic Organization and Generation of Genetic Variability in the RHS (Retrotransposon Hot Spot) Protein Multigene Family in Trypanosoma cruzi
Cited by: 7
Author(s): Werica P Bernardo, Renato T. Souza, André G. Costa-Martins, Éden Ramalho Ferreira, Renato Arruda Mortara, Marta Maria Geraldes Teixeira, José Luis Ramı́rez, José Franco da Silveira
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11101202

R2 and Non-Site-Specific R2-Like Retrotransposons of the German Cockroach, Blattella germanica
Cited by: 1
Author(s): Arina Zagoskina, Sergei Firsov, I. V. Lazebnaya, O. E. Lazebny, Д. В. Муха
Software Mentions: 1
Published: about 4 years ago

10.1128/genomeA.00815-13

Complete Genome Sequence of a Nephropathogenic Infectious Bronchitis Virus Strain Isolated in China
Cited by: 3
Author(s): Jingtian Yang, Bing-cun Ma
Software Mentions: 1
Published: about 11 years ago

10.1128/genomeA.00045-14

Metagenomic Sequence of Prokaryotic Microbiota from an Intermediate-Salinity Pond of a Saltern in Isla Cristina, Spain
Cited by: 12
Author(s): Ana Beatriz Fernández, María José León, Blanca Vera, Cristina Sánchez‐Porro, António Ventosa
Software Mentions: 1
Published: over 10 years ago

10.1128/genomeA.00349-14

Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria ) Isolated from Drosophila suzukii Larvae
Cited by: 4
Author(s): Madison I. Dunitz, Pamela M. James, Guillaume Jospin, Jonathan A. Eisen, David A. Coil, James Angus Chandler
Software Mentions: 1
Published: over 10 years ago

10.1128/genomeA.01543-14

Metagenomics Reveals Planktonic Bacterial Community Shifts across a Natural CO 2 Gradient in the Mediterranean Sea
Cited by: 6
Author(s): Ashvini Chauhan, Ashish Pathak, Riccardo Rodolfo‐Metalpa, Marco Milazzo, Stefan J. Green, Jason M. Hall-Spencer
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00023-17

Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, <i>Colwellia</i> sp. Strain UCD-KL20, <i>Shewanella</i> sp. Strain UCD-KL12, and <i>Shewanella</i> sp. Strain UCD-KL21, Isolated from Seagrass
Cited by: 8
Author(s): Karley M. Lujan, Jonathan A. Eisen, David A. Coil
Software Mentions: 1
Published: over 7 years ago

10.1093/gbe/evw122

Genomic Investigation Reveals Highly Conserved, Mosaic, Recombination Events Associated with Capsular Switching among Invasive<i>Neisseria meningitidis</i>Serogroup W Sequence Type (ST)-11 Strains
Cited by: 29
Author(s): Mustapha M. Mustapha, Jane W. Marsh, Mary G. Krauland, Jorge Onrubia Fernández, Ana Paula Silva de Lemos, Julie C. Dunning Hotopp, Xin Wang, Leonard W. Mayer, Jeffrey G. Lawrence, N. Luisa Hiller, Lee H. Harrison
Software Mentions: 1
Published: over 8 years ago

10.1093/gbe/evv202

Evolutionary and Phylogenetic Analysis of the Hepaciviruses and Pegiviruses
Cited by: 55
Author(s): Julien Thézé, Sophia Lowes, Joe Parker, Oliver G. Pybus
Software Mentions: 1
Published: about 9 years ago

10.1186/s13073-021-00943-6

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2
Cited by: 14
Author(s): Juan Ángel Patiño-Galindo, Ioan Filip, Ranjana Chowdhury, Costas D. Maranas, Peter K. Sorger, Mohammed AlQuraishi, Raúl Rabadán
Software Mentions: 1
Published: over 3 years ago

10.1186/s13099-017-0218-5

Differences in the gut microbiota of dogs (Canis lupus familiaris) fed a natural diet or a commercial feed revealed by the Illumina MiSeq platform
Cited by: 69
Author(s): Junhyung Kim, Jae-Uk An, Woohyun Kim, Soomin Lee, Seongbeom Cho
Software Mentions: 1
Published: about 7 years ago

10.1186/s13099-021-00430-8

Evolution of the GII.3[P12] Norovirus from 2010 to 2019 in Jiangsu, China
Cited by: 5
Author(s): Jianguang Fu, Jing Ai, Changjun Bao, Jun Zhang, Qingbin Wu, Liguo Zhu, Jianli Hu, Zheng Xing
Software Mentions: 1
Published: over 3 years ago

10.1016/j.heliyon.2019.e03099

Evolution of Avian orthoavulavirus 16 in wild avifauna of Central Asia
Cited by: 4
Author(s): Kobey Karamendin, Aidyn Kydyrmanov, Yermukhammet Kasymbekov, Aigerim Seidalina, Klara Daulbayeva, Marat Sayatov, Sasan Fereidouni
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00251-017-1038-y

Discovery of gorilla MHC-C expressing C1 ligand for KIR
Cited by: 1
Author(s): Jörg B Hans, Linda Vigilant
Software Mentions: 1
Published: about 7 years ago

10.1016/j.meegid.2019.103931

Detection of a novel reassortant epizootic hemorrhagic disease virus serotype 6 in cattle in Trinidad, West Indies, containing nine RNA segments derived from exotic EHDV strains with an Australian origin
Cited by: 7
Author(s): Paulina Rajko-Nenow, Tamiko Brown-Joseph, Chandana Tennakoon, John Flannery, Christopher Oura, Carrie Batten
Software Mentions: 1
Published: about 5 years ago

10.1016/j.meegid.2019.103917

Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus
Cited by: 208
Author(s): Kiril M. Dimitrov, Célia Abolnik, Claudio L. Afonso, Emmanuel Albina, Justin Bahl, Mikael Berg, François-Xavier Briand, Ian H. Brown, Kang-Seuk Choi, Ilya Chvala, Diego G. Diel, Peter A. Durr, Helena Lage Ferreira, Alice Fusaro, Patricia Gil, Gabriela V. Goujgoulova, Christian Grund, Joseph T. Hicks, Tony M. Joannis, Mia Kim Torchetti, С. Н. Колосов, Bénédicte Lambrecht, Nicola S. Lewis, Haijin Liu, Hualei Liu, Sam McCullough, Patti J. Miller, Isabella Monne, Claude P. Muller, Muhammad Munir, Dilmara Reischak, Mahmoud Sabra, Siba K. Samal, Renata Servan de Almeida, Ismaila Shittu, Chantal J. Snoeck, David L. Suarez, Steven Van Borm, Zhiliang Wang, Frank Wong
Software Mentions: 1
Published: about 5 years ago

10.3390/insects12030224

Overwintering Honey Bee Colonies: Effect of Worker Age and Climate on the Hindgut Microbiota
Cited by: 13
Author(s): Patrick Maes, Amy S. Floyd, Brendon M. Mott, Kirk E. Anderson
Software Mentions: 1
Published: over 3 years ago

10.1016/j.jaci.2016.07.029

Skin microbiome before development of atopic dermatitis: Early colonization with commensal staphylococci at 2 months is associated with a lower risk of atopic dermatitis at 1 year
Cited by: 241
Author(s): Elizabeth A. Kennedy, Jennifer Connolly, Jonathan Hourihane, Padraic G. Fallon, William McLean, Deirdre M. Murray, Jay‐Hyun Jo, Julia A. Segre, Heidi H. Kong, Alan D. Irvine
Software Mentions: 1
Published: almost 8 years ago

10.1111/jam.14030

Hydrocarbon-degrading bacteria in deep-water subarctic sediments (Faroe-Shetland Channel)
Cited by: 38
Author(s): Evangelia Gontikaki, Lloyd D. Potts, James A. Anderson, Ursula Witte
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jasrep.2018.07.017

Greco-Roman mineral (litho)therapeutics and their relationship to their microbiome: The case of the red pigment miltos
Cited by: 7
Author(s): Effie Photos-Jones, Charles W. Knapp, Danae Venieri, George E. Christidis, Christine N. Elgy, Eugénia Valsami-Jones, Iosifina Gounaki, Nafsika C. Andriopoulou
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12929-019-0541-x

Genomic analysis of serologically untypable human enteroviruses in Taiwan
Cited by: 5
Author(s): Yeh-Sheng Chien, Shu-Ting Luo, Kuo‐Chien Tsao, Yhu-Chering Huang, Wan-Yu Chung, Yu-Chieh Liao, Yi Tan, Suman Das, Min-Shi Lee
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.0010005

Ancient Origin and Gene Mosaicism of the Progenitor of Mycobacterium tuberculosis
Cited by: 540
Author(s): M. Cristina Gutiérrez, Sylvain Brisse, Roland Brosch, M. Fabre, Bahia Omaïs, Magali Marmiesse, Philip Supply, Véronique Vincent
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.ppat.1000418

Molecular Mechanisms of Recombination Restriction in the Envelope Gene of the Human Immunodeficiency Virus
Cited by: 72
Author(s): Etienne Simon‐Lorière, Román Galetto, Meriem Hamoudi, John Archer, Pierre Lefeuvre, Darren P. Martin, David L. Robertson, Matteo Negroni
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.ppat.1000872

The Effect of Vaccination on the Evolution and Population Dynamics of Avian Paramyxovirus-1
Cited by: 67
Author(s): Yee Ling Chong, Abinash Padhi, Peter J. Hudson, Mary Poss
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002271

A Novel Core Genome-Encoded Superantigen Contributes to Lethality of Community-Associated MRSA Necrotizing Pneumonia
Cited by: 169
Author(s): G. L. Wilson, Keun Seok Seo, Robyn A. Cartwright, Timothy Connelley, Olivia N. Chuang-Smith, Joseph A. Merriman, Caitriona M. Guinane, Joo Youn Park, Gregory A. Bohach, Patrick M. Schlievert, W. Ivan Morrison, J. Ross Fitzgerald
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1002760

The YfiBNR Signal Transduction Mechanism Reveals Novel Targets for the Evolution of Persistent Pseudomonas aeruginosa in Cystic Fibrosis Airways
Cited by: 107
Author(s): Jacob G. Malone, Tina Jaeger, Pablo Manfredi, Andreas Dötsch, Andrea Blanka, Raphael Bos, Guy R. Cornelis, Susanne Häußler, Urs Jenal
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1002950

Evolutionary History and Attenuation of Myxoma Virus on Two Continents
Cited by: 86
Author(s): Peter J. Kerr, Elodie Ghedin, Jay V. DePasse, Adam Fitch, Isabella M. Cattadori, Peter J. Hudson, David C. Tscharke, Andrew F. Read, Edward C. Holmes
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1003838

Cell Tropism Predicts Long-term Nucleotide Substitution Rates of Mammalian RNA Viruses
Cited by: 28
Author(s): Alan C. Hicks, Siobain Duffy
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1006413

Genomic fossils reveal adaptation of non-autonomous pararetroviruses driven by concerted evolution of noncoding regulatory sequences
Cited by: 5
Author(s): Sunlu Chen, Huizhen Zheng, Yuji Kishima
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1006750

The paradox of HBV evolution as revealed from a 16th century mummy
Cited by: 62
Author(s): Zoe Patterson Ross, Jennifer Klunk, Gino Fornaciari, Valentina Giuffra, Sebastián Duchêne, Ana T. Duggan, Debi Poinar, Mark W. Douglas, John‐Sebastian Eden, Edward C. Holmes, Hendrik N. Poinar
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40813-020-00147-1

Identification of two divergent swine Noroviruses detected at the slaughterhouse in North East Italy
Cited by: 5
Author(s): Andrea Laconi, Lara Cavicchio, Luca Tassoni, Giovanni Cunial, Adelaide Milani, Martina Ustulin, Guido Di Martino, Mario Forzan, Mery Campalto, Isabella Monne, Maria Serena Beato
Software Mentions: 1
Published: over 4 years ago

10.1098/rspb.2014.0094

Experimental antibiotic treatment identifies potential pathogens of white band disease in the endangered Caribbean coral <i>Acropora cervicornis</i>
Cited by: 71
Author(s): Michael Sweet, Aldo Cróquer, John C. Bythell
Software Mentions: 1
Published: over 10 years ago

10.1098/rspb.2014.1687

Multiple species of wild tree peonies gave rise to the ‘king of flowers’, <i>Paeonia suffruticosa</i> Andrews
Cited by: 66
Author(s): Shiliang Zhou, Xinhui Zou, Zhiqin Zhou, Jing Liu, Chao Xu, Jing Yu, Qiang Wang, Daming Zhang, Xiaoquan Wang, Song Ge, Tao Su, Pan Kai-Yu, Hong De‐Yuan
Software Mentions: 1
Published: almost 10 years ago

10.1098/rsos.160123

Enhanced antimicrobial peptide-induced activity in the mollusc Toll-2 family through evolution via tandem Toll/interleukin-1 receptor
Cited by: 3
Author(s): Jun Cao, Yihong Chen, Min Jin, Qian Ren
Software Mentions: 1
Published: over 8 years ago

10.1098/rsos.190211

Agarwood wound locations provide insight into the association between fungal diversity and volatile compounds in <i>Aquilaria sinensis</i>
Cited by: 9
Author(s): Juan Liu, Xiang Zhang, Jian Yang, Junhui Zhou, Yuan Yuan, Xiaofeng Chi, Luqi Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/1742-4690-10-49

Within-host and between-host evolutionary rates across the HIV-1 genome
Cited by: 105
Author(s): Samuel Alizon, Christophe Fraser
Software Mentions: 1
Published: over 11 years ago

10.1186/s12977-014-0080-1

Feline immunodeficiency virus (FIV) envrecombinants are common in natural infections
Cited by: 13
Author(s): Paweł M. Bęczkowski, Joseph Hughes, Roman Biek, Annette Litster, Brian J. Willett, Margaret J. Hosie
Software Mentions: 1
Published: about 10 years ago

10.1186/s12977-015-0214-0

Wide distribution and ancient evolutionary history of simian foamy viruses in New World primates
Cited by: 24
Author(s): Bruno M. Ghersi, Honglin Jia, Pakorn Aiewsakun, Patricia Mendoza, Daniel G. Bausch, Matthew R. Kasper, Joel M. Montgomery, William M. Switzer
Software Mentions: 1
Published: about 9 years ago

10.1186/s12977-018-0390-9

Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient
Cited by: 12
Author(s): Jacqui Brener, Astrid Gall, Jacob Hurst, Rebecca Batorsky, Nora Lavandier, Fabian Chen, Anne Edwards, Chrissy Bolton, Reena R D'Souza, Todd M. Allen, Oliver G. Pybus, Paul Kellam, Philippa C. Matthews, Philip Goulder
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep07040

Genetic and epidemiological insights into the emergence of peste des petits ruminants virus (PPRV) across Asia and Africa
Cited by: 27
Author(s): Abinash Padhi, Li Ma
Software Mentions: 1
Published: about 10 years ago

10.1038/srep08153

Global-scale computational analysis of genomic sequences reveals the recombination pattern and coevolution dynamics of cereal-infecting geminiviruses
Cited by: 16
Author(s): Beilei Wu, Xiaonan Shang, Jörg Schubert, Antje Habekuß, Santiago F. Elena, Xifeng Wang
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep08185

Molecular evolution of the VP1, VP2 and VP3 genes in human rhinovirus species C
Cited by: 19
Author(s): Makoto Kuroda, Shoichi Niwa, Tsuyoshi Sekizuka, Hiroyuki Tsukagoshi, Masahiro Yokoyama, Akihide Ryo, Hironori Sato, Naoko Kiyota, Masahiro Noda, Kunihisa Kozawa, Komei Shirabe, Takashi Kusaka, Naoki Shimojo, Shunji Hasegawa, Kazuko Sugai, Masatsugu Obuchi, Masato Tashiro, Kazunori Oishi, Haruyuki Ishii, Hirokazu Kimura
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep09001

Molecular-based approaches to characterize coastal microbial community and their potential relation to the trophic state of Red Sea
Cited by: 22
Author(s): Mohd Ikram Ansari, Moustapha Harb, Burton H. Jones, Pei‐Ying Hong
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12234

Aboveground-belowground biodiversity linkages differ in early and late successional temperate forests
Cited by: 19
Author(s): Hui Li, Xugao Wang, Chao Liang, Zhanqing Hao, Lisha Zhou, Sam Ma, Xiaobin Li, Shan Yang, Fei Yao, Yong Jiang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep14876

Multiple origins of BBCC allopolyploid species in the rice genus (Oryza)
Cited by: 18
Author(s): Xinhui Zou, Yu-Su Du, Liang Tang, Xinglong Xu, Jeff J. Doyle, Tao Su, Song Ge
Software Mentions: 1
Published: about 9 years ago

10.1038/srep24340

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
Cited by: 263
Author(s): Lei Han, Xianwu Guo, Ravi Gooneratne, Ruifang Lai, Cong Zeng, Fanbin Zhan, Weimin Wang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26741

Discovery and small RNA profile of Pecan mosaic-associated virus, a novel potyvirus of pecan trees
Cited by: 12
Author(s): Xiu Su, Shuai Fu, Yajuan Qian, Liqin Zhang, Yi Xu, Xueping Zhou
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26818

Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar
Cited by: 124
Author(s): Zongmin Wang, Zhen-Ming Lü, Jin‐Song Shi, Zhenghong Xu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep35232

Bacterial abundance and diversity in pond water supplied with different feeds
Cited by: 71
Author(s): Yipeng Qin, Jie Hou, Ming Deng, Quansheng Liu, Chongwei Wu, Yingjie Ji, Xinyi He
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36062

Sebum and Hydration Levels in Specific Regions of Human Face Significantly Predict the Nature and Diversity of Facial Skin Microbiome
Cited by: 97
Author(s): Souvik Mukherjee, Rupak Mitra, Arindam Maitra, Satyaranjan Gupta, Srikala Kumaran, Amit Chakrabortty, Partha P. Majumder
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36960

Lineage diversification, homo- and heterologous reassortment and recombination shape the evolution of chicken orthoreoviruses
Cited by: 22
Author(s): Szilvia L. Farkas, Szilvia Marton, Eszter Dandár, Renáta Kugler, Bence Gál, Ferenc Jakab, Ádám Bálint, Sándor Kecskeméti, Krisztiàn Bányai
Software Mentions: 1
Published: about 8 years ago

10.1038/srep44084

Worldwide circulation of HSV-2 × HSV-1 recombinant strains
Cited by: 76
Author(s): David M. Koelle, Peter Norberg, Matthew Fitzgibbon, Ronnie M. Russell, Alexander L. Greninger, Meei‐Li Huang, Larry Stensland, Lichen Jing, Amalia Magaret, Kurt Diem, Stacy Selke, Hong Xie, Connie Celum, Jairam R. Lingappa, Keith R. Jerome, Anna Wald, Christine Johnston
Software Mentions: 1
Published: over 7 years ago

10.1038/srep44369

Dynamic Circulation and Genetic Exchange of a Shrew-borne Hantavirus, Imjin virus, in the Republic of Korea
Cited by: 19
Author(s): Seung Ho Lee, Won Keun Kim, Jin Sun No, Jeong Ah Kim, Sang Hyun Kim, Se Hun Gu, Sang Hyun Kim, Terry A. Klein, Man Seong Park
Software Mentions: 1
Published: over 7 years ago

10.1038/srep45133

Sequential displacement of Type VI Secretion System effector genes leads to evolution of diverse immunity gene arrays in Vibrio cholerae
Cited by: 79
Author(s): Paul C. Kirchberger, Daniel Unterweger, Daniele Provenzano, Stefan Pukatzki, Yan Boucher
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00395-2

A permanent host shift of rabies virus from Chiroptera to Carnivora associated with recombination
Cited by: 23
Author(s): Nai-Zheng Ding, Dong-Shuai Xu, Yuanyuan Sun, Hongbin He, Cheng-Qiang He
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00727-2

Multiple begomoviruses found associated with cotton leaf curl disease in Pakistan in early 1990 are back in cultivated cotton
Cited by: 46
Author(s): Muhammad Zubair, Syed Shan-e-Ali Zaidi, Sara Shakir, Muhammad Farooq, Imran Amin, Jodi A. Scheffler, Brian E. Scheffler, Shahid Mansoor
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02059-7

Cryptic diversity in the Japanese mantis shrimp Oratosquilla oratoria (Crustacea: Squillidae): Allopatric diversification, secondary contact and hybridization
Cited by: 29
Author(s): Jiao Cheng, Zhongli Sha
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02475-9

The Variable Influence of Dispersant on Degradation of Oil Hydrocarbons in Subarctic Deep-Sea Sediments at Low Temperatures (0–5 °C)
Cited by: 36
Author(s): Robert Ferguson, Evangelia Gontikaki, James A. Anderson, Ursula Witte
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01293-3

Circulation of HAdV-41 with diverse genome types and recombination in acute gastroenteritis among children in Shanghai
Cited by: 7
Author(s): Peng Li, Lang Yang, Jiayin Guo, Wenwei Zou, Xuebin Xu, Xiaoxia Yang, Xinying Du, Shaofu Qiu, Hongbin Song
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01934-7

The Timescale of Emergence and Spread of Turnip Mosaic Potyvirus
Cited by: 52
Author(s): Ryosuke Yasaka, Hirofumi Fukagawa, Mutsumi Ikematsu, Hiroko Soda, Savaş Korkmaz, A. R. Golnaraghi, N. I. Katis, Simon Y. W. Ho, Adrian Gibbs, Kazusato Ohshima
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06573-6

Phylodynamics of major CRF01_AE epidemic clusters circulating in mainland of China
Cited by: 33
Author(s): Xiaolin Wang, Xiang He, Ping Zhong, Yongjian Liu, Tao Gui, Dijing Jia, Hanping Li, Jianjun Wu, Yan Jin, Dianmin Kang, Yang Han, Taisheng Li, Rongge Yang, Xiaoxu Han, Lin Chen, Jin Zhao, Hui Xing, Shu Liang, Jianmei He, Yan Yan-sheng, Ying Xue, Jiafeng Zhang, Xun Zhuang, Shanshan Liang, Zhenmin Bao, Tianyi Li, Daomin Zhuang, Siyang Liu, Jingwan Han, Lei Jia, Jingyun Li, Lin Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06860-2

Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden
Cited by: 11
Author(s): Ujjwal Neogi, Abu Bakar Siddik, Prabhav Kalaghatgi, Magnus Gisslén, Göran Bratt, Gaetano Marrone, Anders Sönnerborg
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06987-2

Epidemiology and characterization of avian infectious bronchitis virus strains circulating in southern China during the period from 2013–2015
Cited by: 30
Author(s): Kang Feng, Feng Wang, Yu Xue, Qingfeng Zhou, Feng Chen, Yingzuo Bi, Qingmei Xie
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06853-1

Increased Prevalence of Severe Fever with Thrombocytopenia Syndrome in Eastern China Clustered with Multiple Genotypes and Reasserted Virus during 2010–2015
Cited by: 30
Author(s): Zhifeng Li, Jianli Hu, Lunbiao Cui, Hong Ye, Jianwei Liu, Pengfei Li, Xiling Guo, Wendong Li, Xiaochen Wang, Xian Qi, Bin Wu, Zhi Chun Feng, Ai-hua Shen, Xuejian Liu, Hongjun Zhao, Winston Tan, Jiangang Zhou, Zheng Xing, Changjun Bao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07873-7

Phylodynamics of Yellow Fever Virus in the Americas: new insights into the origin of the 2017 Brazilian outbreak
Cited by: 60
Author(s): Daiana Mir, Edson Delatorre, Myrna C. Bonaldo, Ricardo Lourenço‐de‐Oliveira, Ana Carolina Paulo Vicente, Gonzalo Bello
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09395-8

Bifidobacterium pseudocatenulatum LI09 and Bifidobacterium catenulatum LI10 attenuate D-galactosamine-induced liver injury by modifying the gut microbiota
Cited by: 61
Author(s): Daiqiong Fang, Ding Shi, Longxian Lv, Silan Gu, Wenshuai Wu, Yanfei Chen, Jing Guo, Ang Li, Xinjun Hu, Feifei Guo, Jianzhong Ye, Lanjian Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09672-6

Intertidal marine sediment harbours Actinobacteria with promising bioactive and biosynthetic potential
Cited by: 42
Author(s): Polpass Arul Jose, Bhavanath Jha
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-05398-7

Purple spot damage dynamics investigated by an integrated approach on a 1244 A.D. parchment roll from the Secret Vatican Archive
Cited by: 25
Author(s): Luciana Migliore, María Cristina Thaller, Giulia Vendittozzi, Astrid Y. Mejia, F. Mercuri, S. Orlanducci, Alessandro Rubechini
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13902-2

Characterization of old RHDV strains by complete genome sequencing identifies a novel genetic group
Cited by: 12
Author(s): Ana M. Lopes, Diogo Silvério, Maria João Magalhães, Helena Areal, Paulo C. Alves, Pedro J. Esteves, Joana Abrantes
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15336-2

Whole genomic analysis of two potential recombinant strains within Human mastadenovirus species C previously found in Beijing, China
Cited by: 12
Author(s): Naiying Mao, Zhen Zhu, Pierre Rivailler, Chen Meng, Qin Fan, Fang Huang, Wenbo Xu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16775-7

Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample
Cited by: 27
Author(s): Subir Sarker, Hayley K. Roberts, Naomie Tidd, Shayne Ault, Georgia Ladmore, Andrew Peters, Jade K. Forwood, Karla J. Helbig, Shane R. Raidal
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17743-x

Structure and function of the microbial consortia of activated sludge in typical municipal wastewater treatment plants in winter
Cited by: 109
Author(s): Bo Zhang, Xiangyang Xu, Liang Zhu
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-22505-4

Automated high throughput animal CO1 metabarcode classification
Cited by: 98
Author(s): Teresita M. Porter, Mehrdad Hajibabaei
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24870-6

A traditional evolutionary history of foot-and-mouth disease viruses in Southeast Asia challenged by analyses of non-structural protein coding sequences
Cited by: 32
Author(s): Bárbara Brito, Steven J. Pauszek, E. E. Hartwig, George R. Smoliga, Le T. Vu, Pham V. Dong, Carolina Stenfeldt, Luis L. Rodrı́guez, Donald P. King, Nick J. Knowles, Katarzyna Bachanek‐Bankowska, Nguyễn Thành Long, Do H. Dung, Jonathan Arzt
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25936-1

Novel canine circovirus strains from Thailand: Evidence for genetic recombination
Cited by: 47
Author(s): Chutchai Piewbang, Wendy K Jo, Christina Puff, Erhard van der Vries, Sawang Kesdangsakonwut, Anudep Rungsipipat, Jochen Kruppa, Klaus Jung, Wolfgang Baumgärtner, Somporn Techangamsuwan, Martin Ludlow, Albert D. M. E. Osterhaus
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29473-9

Greater Microbial Translocation and Vulnerability to Metabolic Disease in Healthy Aged Female Monkeys
Cited by: 35
Author(s): Quentin N. Wilson, Magan Wells, Ashley Davis, Christina H. Sherrill, Matthew C. B. Tsilimigras, Roshonda B. Jones, Anthony A. Fodor, Kylie Kavanagh
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30214-1

Near full length genome of a recombinant (E/D) cosavirus strain from a rural area in the central region of Brazil
Cited by: 16
Author(s): Antônio Charlys da Costa, Adriana Luchs, Flávio Augusto de Pádua Milagres, Shirley Vasconcelos Komninakis, Danielle Elise Gill, Márcia Cristina Alves Brito Sayão Lobato, Rafael Brustulin, Rogério Togisaki das Chagas, Maria de Fátima Neves dos Santos Abrão, Cássia Vitória de Deus Alves Soares, Xutao Deng, Éster Cerdeira Sabino, Eric Delwart, Élcio Leal
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36892-1

Integration of genetic and epidemiological data to infer H5N8 HPAI virus transmission dynamics during the 2016-2017 epidemic in Italy
Cited by: 18
Author(s): Paolo Mulatti, Alice Fusaro, Francesca Scolamacchia, Bianca Zecchin, A. Azzolini, Gianpiero Zamperin, Calogero Terregino, Giovanni Cunial, Isabella Monne, Stefano Marangon
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-38719-z

Recombination analysis of Human mastadenovirus C whole genomes
Cited by: 11
Author(s): Pierre Rivailler, Naiying Mao, Zhen Zhu, Wenbo Xu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-39059-8

Emergence of Two different recombinant PRRSV strains with low neutralizing antibody susceptibility in China
Cited by: 17
Author(s): Guangwei Han, Huiling Xu, Kexiong Wang, Fang He
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37756-4

Genome Analysis of A Novel Recombinant Human Adenovirus Type 1 in China
Cited by: 12
Author(s): Wanju Zhang, Lisu Huang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42716-7

Selection of carbohydrate-active probiotics from the gut of carnivorous fish fed plant-based diets
Cited by: 37
Author(s): Cláudia R. Serra, Eduarda Almeida, Inês Guerreiro, Rafaela Santos, Daniel L. Merrifield, Fernando Tavares, Aires Oliva-Teles, Paula Enes
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46964-5

Impact of intrapartum and postnatal antibiotics on the gut microbiome and emergence of antimicrobial resistance in infants
Cited by: 96
Author(s): Terhi Tapiainen, Pirjo Koivusaari, Lauren Brinkac, Hernán Lorenzi, Jarmo A. Salo, Marjo Renko, Hannele Pruikkonen, Tytti Pokka, Weizhong Li, Karen E. Nelson, Anna Maria Pirttilä, Mysore V. Tejesvi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47239-9

Efficacy of Type 2 PRRSV vaccine against challenge with the Chinese lineage 1 (NADC30-like) PRRSVs in pigs
Cited by: 20
Author(s): Cheng Wei, Ailing Dai, Jialin Fan, Yan Li, Anni Chen, Xia Zhou, Luo Man-lin, Xiaoyan Yang, Jian‐Kui Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48569-4

Prevalence and complete genome of bovine norovirus with novel VP1 genotype in calves in China
Cited by: 5
Author(s): Yuelin Wang, Hua Yue, Cheng Tang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48714-z

Analyses of virus/viroid communities in nectarine trees by next-generation sequencing and insight into viral synergisms implication in host disease symptoms
Cited by: 17
Author(s): Yunxiao Xu, Shifang Li, Chengyong Na, Lijuan Yang, Meiguang Lu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-51444-x

Genetic structure of Mycoplasma ovipneumoniae informs pathogen spillover dynamics between domestic and wild Caprinae in the western United States
Cited by: 17
Author(s): Pauline L. Kamath, Kezia R. Manlove, E. Frances Cassirer, Paul C. Cross, Thomas E. Besser
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52209-2

Genetic characterization of a novel picornavirus in Algerian bats: co-evolution analysis of bat-related picornaviruses
Cited by: 3
Author(s): Safia Zeghbib, Róbert Herczeg, Gábor Kemenesi, Brigitta Zana, Kornélia Kurucz, Péter Urbán, Mónika Madai, Fanni Földes, Henrietta Papp, B Somogyi, Ferenc Jakab
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52902-2

Feline bocavirus-1 associated with outbreaks of hemorrhagic enteritis in household cats: potential first evidence of a pathological role, viral tropism and natural genetic recombination
Cited by: 27
Author(s): Chutchai Piewbang, Tanit Kasantikul, Kidsadagon Pringproa, Somporn Techangamsuwan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-56650-1

Origin of the São Paulo Yellow Fever epidemic of 2017–2018 revealed through molecular epidemiological analysis of fatal cases
Cited by: 43
Author(s): Marielton dos Passos Cunha, Amaro Nunes Duarte‐Neto, Shahab Zaki Pour, Ayda Susana Ortiz-Báez, Jiří Černý, Bárbara Brito de Souza Pereira, Carla Torres Braconi, Yeh‐Li Ho, Beatriz Perondi, Jaques Sztajnbok, Venâncio Avancini Ferreira Alves, Marisa Dolhnikoff, Edward C. Holmes, Paulo Hilário Nascimento Saldiva, Paolo Marinho de Andrade Zanotto
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-54714-w

A comprehensive global perspective on phylogenomics and evolutionary dynamics of Small ruminant morbillivirus
Cited by: 10
Author(s): Muhammad Zubair Shabbir, Aziz-ul Rahman, Muhammad Munir
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-63340-w

A combination of genetics and microbiota influences the severity of the obesity phenotype in diet-induced obesity
Cited by: 8
Author(s): Margarethe Smoczek, Marius Vital, Dirk Wedekind, Marijana Basic, Nils–Holger Zschemisch, Dietmar H. Pieper, Anja Siebert, Manuela Büettner
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67222-z

Insights into the molecular diversity of Plasmodium vivax merozoite surface protein-3γ (pvmsp3γ), a polymorphic member in the msp3 multi-gene family
Cited by: 5
Author(s): Napaporn Kuamsab, Chaturong Putaporntip, Urassaya Pattanawong, Somchai Jongwutiwes
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-78459-z

Comparative analysis of bacterioplankton assemblages from two subtropical karst reservoirs of southwestern China with contrasting trophic status
Cited by: 4
Author(s): Qiang Li, Yadan Huang, Shenglin Xin, Zhongyi Li
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82872-3

Characterization of HIV-1 recombinant and subtype B near full-length genome among men who have sex with men in South Korea
Cited by: 2
Author(s): Sang-Mi Ryou, Myeongsu Yoo, Kisoon Kim, Sang Soo Kim, Sang Il Kim, Youn Jeong Kim, Dae Won Park, Jun Yong Choi, Hyo Youl Kim, Jung Ho Kim, Joon Young Song, Shin‐Woo Kim, Hyun Ha Chang, Bo Youl Choi, Mee Kyung Kee
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-98226-y

Genome-wide estimation of recombination, mutation and positive selection enlightens diversification drivers of Mycobacterium bovis
Cited by: 3
Author(s): Ana C. Reis, Mónica V. Cunha
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-021-98299-9

Evolutionary study of maize dwarf mosaic virus using nearly complete genome sequences acquired by next-generation sequencing
Cited by: 5
Author(s): Dulanjani Wijayasekara, Akhtar Ali
Software Mentions: 1
Published: about 3 years ago