Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: RDP

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RDP

The Ramer-Douglas-Peucker Algorithm
8 versions
Latest release: over 1 year ago
306 downloads last month

Papers Mentioning RDP 1,243

10.1186/s40168-017-0249-7
Legal immigrants: invasion of alien microbial communities during winter occurring desert dust storms
Cited by: 64
Author(s): Tobias Weil, Carlotta De Filippo, Davide Albanese, Claudio Donati, Massimo Pindo, Lorenzo Pavarini, Federico Carotenuto, Massimiliano Pasqui, Luisa Poto, Jacopo Gabrieli, Carlo Barbante, Birgit Sattler, Duccio Cavalieri, Franco Miglietta
Software Mentions: 2
Published: over 7 years ago
10.1186/2049-2618-1-8
A gene-targeted approach to investigate the intestinal butyrate-producing bacterialcommunity
Cited by: 116
Author(s): Marius Vital, C. Ryan Penton, Qiong Wang, Vincent B. Young, Dion Antonopoulos, Mitchell L. Sogin, Hilary G. Morrison, Laura H. Raffals, Eugene B. Chang, Gary B. Huffnagle, Thomas M. Schmidt, James R. Cole, James M. Tiedje
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-2164-11-523
Study of inter- and intra-individual variations in the salivary microbiota
Cited by: 197
Author(s): Vladimir Lazarević, Katrine Whiteson, David Hernández, Patrice François, Jacques Schrenzel
Software Mentions: 2
Published: almost 15 years ago
10.1371/journal.pone.0051175
Pollution Impacts on Bacterioplankton Diversity in a Tropical Urban Coastal Lagoon System
Cited by: 17
Author(s): Gigliola Rhayd Boechat Sallôto, Alexander Machado Cardoso, Felipe H. Coutinho, Leonardo Henriques Pinto, Ricardo P. Vieira, Catia Chaia, J. L. F. Lima, Rodolpho Mattos Albano, Orlando B. Martins, Maysa M. Clementino
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0055817
Alterations in the Colonic Microbiota in Response to Osmotic Diarrhea
Cited by: 105
Author(s): Gregor Gorkiewicz, Gerhard G. Thallinger, Slave Trajanoski, Sonja Lackner, Gernot Stocker, Thomas Hinterleitner, Christian Gülly, Christoph Högenauer
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0237975
A multi-omics approach to solving problems in plant disease ecology
Cited by: 43
Author(s): Sharifa G. Crandall, Kaitlin M. Gold, María del Mar Jiménez-Gasco, Camila C. Filgueiras, Denis S. Willett
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0054326
Sediment Bacterial Communities Reflect the History of a Sea Basin
Cited by: 20
Author(s): Christina Lyra, Hanna Sinkko, Matias Rantanen, Lars Paulín, Aarno Kotilainen
Software Mentions: 2
Published: almost 12 years ago
10.3389/fmicb.2014.00529
Biogeography rather than association with cyanobacteria structures symbiotic microbial communities in the marine sponge Petrosia ficiformis
Cited by: 53
Author(s): Ilia Burgsdorf, Patrick M. Erwin, Susanna López‐Legentil, Carlo Cerrano, Markus Haber, Sammy Frenk, Laura Steindler
Software Mentions: 2
Published: about 10 years ago
10.1038/s41598-017-17680-9
Rebound of Cotton leaf curl Multan virus and its exclusive detection in cotton leaf curl disease outbreak, Punjab (India), 2015
Cited by: 22
Author(s): Sibnarayan Datta, Raghvendra Budhauliya, Bidisha Das, Reji Gopalakrishnan, Sonika Sharma, Soumya Chatterjee, Vanlalhmuaka, Pakalapati Srinivas Raju, Vijay Veer
Software Mentions: 2
Published: almost 7 years ago
10.1186/2049-2618-2-41
Shaping the oral microbiota through intimate kissing
Cited by: 140
Author(s): Remco Kort, Martien P. M. Caspers, Astrid van de Graaf, Wim van Egmond, Bart J. F. Keijser, Guus Roeselers
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0053115
Pyrosequencing the Canine Faecal Microbiota: Breadth and Depth of Biodiversity
Cited by: 70
Author(s): Daniel Hand, Corrin Wallis, Alison Colyer, Charles W. Penn
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12864-018-4975-4
Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean
Cited by: 28
Author(s): Nicolas W.G. Chen, Laurana Serres-Giardi, Mylène Ruh, Martial Briand, Sophie Bonneau, Armelle Darrasse, Valérie Barbe, Lionel Gagnevin, Ralf Koebnik, Marie‐Agnès Jacques
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0076413
New Avian Paramyxoviruses Type I Strains Identified in Africa Provide New Outcomes for Phylogeny Reconstruction and Genotype Classification
Cited by: 46
Author(s): Renata Servan de Almeida, Saliha Hammoumi, Patricia Gil, François-Xavier Briand, Sophie Molia, Nicolas Gaidet, Julien Cappelle, Véronique Chevalier, Gilles Balança, Abdallah Traoré, Colette Grillet, Olivier Fridolin Maminiaina, Samia Guendouz, Marthin Dakouo, K. Samaké, Ould El Mamy Bezeid, Abbas Diarra, Hassen Chaka, Flavie Goutard, Peter N. Thompson, Dominique Martinez, Véronique Jestin, Emmanuel Albina
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0253622
Genetic characterization and phylogenetic analysis of porcine epidemic diarrhea virus in Guangdong, China, between 2018 and 2019
Cited by: 14
Author(s): Feng Wen, Jing Yang, Anqi Li, Zhijuan Gong, Lulu Yang, Qing Cheng, Congying Wang, Mengmeng Zhao, Sheng Yuan, Yao Chen, Saeed El‐Ashram, Yong Li, Hai Yu, Jianming Guo, Shujian Huang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0231886
Dominance of recombinant cotton leaf curl Multan-Rajasthan virus associated with cotton leaf curl disease outbreak in northwest India
Cited by: 19
Author(s): Kajal Biswas, Utpal Kumar Bhattacharyya, Supratik Palchoudhury, Nenavath Balram, Anil Kumar, R. Arora, S. K. Sain, Pradeep Kumar, Ravi K Khetarpal, Amitava Sanyal, Pranab Kumar Mandal
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-015-1422-7
Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella
Cited by: 17
Author(s): Tsunglin Liu, Ching Min Li, Yuhui Han, Tzen‐Yuh Chiang, Yu Chung Chiang, Huang Mo Sung
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0063380
Phylogenetic and Recombination Analysis of Tomato Spotted Wilt Virus
Cited by: 54
Author(s): Sen Lian, Jong-Seung Lee, Won Kyong Cho, Jisuk Yu, Mi-Kyeong Kim, Hongsoo Choi, Kook‐Hyung Kim
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0015950
Monitoring the Long-Term Molecular Epidemiology of the Pneumococcus and Detection of Potential ‘Vaccine Escape’ Strains
Cited by: 7
Author(s): Gagan A. Pandya, M. Catherine McEllistrem, Pratap Venepally, Megan E. Holmes, Behnam Jarrahi, Ravi Sanka, Lingyun Jia, Svetlana Karamycheva, Yun Bai, Robert Fleischmann, Scott N. Peterson
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0026846
Clinical Validation of Integrated Nucleic Acid and Protein Detection on an Electrochemical Biosensor Array for Urinary Tract Infection Diagnosis
Cited by: 56
Author(s): Ruchika Mohan, Kathleen E. Mach, Moran Bercovici, Yuxin Pan, Lakshmi Dhulipala, Pak Kin Wong, Joseph C. Liao
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0002910
Evidence from GC-TRFLP that Bacterial Communities in Soil Are Lognormally Distributed
Cited by: 11
Author(s): James R. Doroghazi, Daniel H. Buckley
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pone.0003660
Pilus Operon Evolution in Streptococcus pneumoniae Is Driven by Positive Selection and Recombination
Cited by: 21
Author(s): Alessandro Muzzi, Monica Moschioni, Antonello Covacci, Rino Rappuoli, Claudio Donati
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0005288
Complex Evolution of a Y-Chromosomal Double Homeobox 4 (DUX4)-Related Gene Family in Hominoids
Cited by: 6
Author(s): Julia Schmidt, Stefan Kirsch, Gudrun Rappold, Werner Schempp
Software Mentions: 1
Published: over 15 years ago
10.1186/1471-2164-9-576
Use of pyrosequencing and DNA barcodes to monitor variations in Firmicutes and Bacteroidetes communities in the gut microbiota of obese humans
Cited by: 77
Author(s): Fabrice Armougom, Didier Raoult
Software Mentions: 1
Published: almost 17 years ago
10.1186/s12859-018-2540-4
Rapid analysis of metagenomic data using signature-based clustering
Cited by: 2
Author(s): Timothy Chappell, Shlomo Geva, James M. Hogan, Flavia Huygens, Irani Rathnayake, Stephen Rudd, Wayne Kelly, Dimitri Perrin
Software Mentions: 1
Published: almost 6 years ago
10.3390/ani10122230
Effects of Wheat Bran and Clostridium butyricum Supplementation on Cecal Microbiota, Short-Chain Fatty Acid Concentration, pH and Histomorphometry in Broiler Chickens
Cited by: 17
Author(s): Andor Molnár, Nikoletta Such, Valéria Farkas, László Pál, László Menyhárt, László Wagner, Ferenc Húsvéth, Károly Dublecz
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0078970
High Levels of Multiple Infections, Recombination and Horizontal Transmission of Wolbachia in the Andricus mukaigawae (Hymenoptera; Cynipidae) Communities
Cited by: 36
Author(s): Xiaohui Yang, Dao‐Hong Zhu, Zhiwei Liu, Ling Zhao, Cheng‐Yuan Su
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0035279
Methanocella conradii sp. nov., a Thermophilic, Obligate Hydrogenotrophic Methanogen, Isolated from Chinese Rice Field Soil
Cited by: 53
Author(s): Zhe Lü, Yahai Lu
Software Mentions: 1
Published: over 12 years ago
10.1128/MRA.00329-19
Isolation, Whole-Genome Sequencing, and Annotation of Yimella sp. RIT 621, a Strain That Produces Antibiotic Compounds against Escherichia coli ATCC 25922 and Bacillus subtilis BGSC 168
Cited by: 1
Author(s): Anutthaman Parthasarathy, Narayan H. Wong, Nicolas D. Burns, Atlantis H. Aziz-Dickerson, Joyceline Dweh, D’Asia Buchanan, Michael A. Savka, André O. Hudson
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0082857
The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
Cited by: 14
Author(s): Gernot Glöckner, Ivonne Heinze, Matthias Platzer, Christoph Held, Doris Abele
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0081136
Origin and Characteristics of Internal Genes Affect Infectivity of the Novel Avian-Origin Influenza A (H7N9) Virus
Cited by: 20
Author(s): Feng Yan, Haiyan Mao, Chang-ping Xu, Jianmin Jiang, Yin Chen, Juying Yan, Jian Gao, Zhen Li, Shichang Xia, Yi‐Yu Lu
Software Mentions: 1
Published: almost 11 years ago
10.1128/MRA.01385-19
Coding-Complete Genome Sequence of a Recombinant Human Norovirus Strain Identified as Subtype GII.p12_GII.3
Cited by: 2
Author(s): Byung Joo Park, Hee-Seop Ahn, Sang-Hoon Han, Hyeon‐Jeong Go, Eu‐Lim Lyoo, Changsun Choi, Jinjong Myoung, Joong‐Bok Lee, Seung‐Yong Park, Chang‐Seon Song, Sang‐Won Lee, In‐Soo Choi
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pntd.0008049
Genomic epidemiological characteristics of dengue fever in Guangdong province, China from 2013 to 2017
Cited by: 8
Author(s): Bo Sun, Xin Zhang, Huan Zhang, Haizhou Liu, Li Sun, Qiqi Tan, Mifang Liang, De Wu, Di Liu
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pntd.0006670
Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic
Cited by: 22
Author(s): Yi Tan, Brett E. Pickett, Susmita Shrivastava, Lionel Gresh, Ángel Balmaseda, Paolo Amedeo, Lihui Hu, Vinita Puri, Nadia Fedorova, Rebecca Halpin, Matthew P. LaPointe, Marshall Cone, Lea Heberlein-Larson, Laura D. Kramer, Alexander T. Ciota, Aubree Gordon, Reed S. Shabman, Suman Das, Eva Harris
Software Mentions: 1
Published: over 6 years ago
10.1128/MRA.00686-20
Draft Genome Sequences of 15 Bacterial Species Constituting the Stable Defined Intestinal Microbiota of the GM15 Gnotobiotic Mouse Model
Cited by: 2
Author(s): Céline Elie, Alban Mathieu, Adrien Saliou, Adrien Villain, Marion Darnaud, François Leulier, Andrea Tamellini
Software Mentions: 1
Published: about 4 years ago
10.1186/s12864-017-3501-4
SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?
Cited by: 278
Author(s): Monika Balvočiūtė, Daniel H. Huson
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0005159
Archival Isolates Confirm a Single Topotype of West Nile Virus in Australia
Cited by: 3
Author(s): Bixing Huang, Natalie A. Prow, Andrew F. van den Hurk, Richard J. N. Allcock, Peter W. Moore, Stephen L. Doggett, David Warrilow
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pntd.0001049
Multilocus Sequence Typing (MLST) for Lineage Assignment and High Resolution Diversity Studies in Trypanosoma cruzi
Cited by: 95
Author(s): Matthew Yeo, Isabel Maurício, Louisa A. Messenger, Michael D. Lewis, Martin S. Llewellyn, Nidia Acosta, Tapan Bhattacharyya, Patricio Diosque, Hernán J. Carrasco, Michael A. Miles
Software Mentions: 1
Published: over 13 years ago
10.1128/MRA.01636-18
Bacterial Diversity Based on a 16S rRNA Gene Amplicon Data Set from a High-Altitude Crater Lake and Glacial Samples of the Iztaccihuatl Volcanic Complex (Mexico)
Cited by: 3
Author(s): Rosa Paulina Calvillo‐Medina, Juan Pablo Reyes‐Grajeda, Vicente D. Moreno-Andrade, Luis Barba‐Escoto, Victor Bautista-de Lucio, George H. Jones, Juan Campos-Guillén
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-017-4087-6
Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors
Cited by: 30
Author(s): Mylène Ruh, Martial Briand, Sophie Bonneau, Marie‐Agnès Jacques, Nicolas W.G. Chen
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pntd.0002695
Multilocus Sequence Analysis for Leishmania braziliensis Outbreak Investigation
Cited by: 22
Author(s): Mariel Marlow, Mariana Côrtes Boité, Gabriel Eduardo Melim Ferreira, Mário Steindel, Elisa Cupolillo
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pntd.0005408
Diversification of Orientia tsutsugamushi genotypes by intragenic recombination and their potential expansion in endemic areas
Cited by: 53
Author(s): Kwanghun Kim, Na Young Ha, Chan Ki Min, Hong Il Kim, Nguyen Thi Hai Yen, Keun Hwa Lee, Inbo Oh, Jae Seung Kang, Myung Sik Choi, Ik Sang Kim, Nam Hyuk Cho
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0000945
Geo-spatial Hotspots of Hemorrhagic Fever with Renal Syndrome and Genetic Characterization of Seoul Variants in Beijing, China
Cited by: 35
Author(s): Shimin Zuo, Li‐Qun Fang, Zhan Li, Pan-He Zhang, Jia-Fu Jiang, Liping Wang, Jiaqi Ma, Bingcai Wang, Ri-min Wang, Xiaoming Wu, Hong Yang, Zhen Cao, Wu‐Chun Cao
Software Mentions: 1
Published: almost 14 years ago
10.1186/1471-2105-11-358
MetaBar - a tool for consistent contextual data acquisition and standards compliant submission
Cited by: 11
Author(s): Wolfgang Hankeln, Pier Luigi Buttigieg, Dennis Fink, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner
Software Mentions: 1
Published: over 14 years ago
10.5713/ab.20.0601
Rumen bacteria influence milk protein yield of yak grazing on the Qinghai-Tibet plateau
Cited by: 8
Author(s): Qingshan Fan, Metha Wanapat, Fujiang Hou
Software Mentions: 1
Published: about 3 years ago
10.3390/v11121131
Pediatric Infections by Human mastadenovirus C Types 2, 89, and a Recombinant Type Detected in Japan between 2011 and 2018
Cited by: 4
Author(s): Ken-Ichiro Takahashi, Gabriel González, Mariko Kobayashi, Nozomu Hanaoka, Michael J. Carr, Masami Konagaya, Naomi Nojiri, Miki Ogi, Tsuguto Fujimoto
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pntd.0000752
High Rates of Homologous Recombination in the Mite Endosymbiont and Opportunistic Human Pathogen Orientia tsutsugamushi
Cited by: 49
Author(s): Piengchan Sonthayanon, Sharon J. Peacock, Wirongrong Chierakul, Vanaporn Wuthiekanun, Stuart D. Blacksell, Matthew T. G. Holden, Stephen D. Bentley, Edward J. Feil, Nicholas P. J. Day
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pntd.0003494
The Emergence of Resistance to the Benzimidazole Anthlemintics in Parasitic Nematodes of Livestock Is Characterised by Multiple Independent Hard and Soft Selective Sweeps
Cited by: 113
Author(s): Elizabeth Redman, Fiona Whitelaw, Andrew Tait, Charlotte G.S. Burgess, Yvonne Bartley, Philip Skuce, F. Jackson, John S. Gilleard
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pntd.0008666
Tripartite interactions: Leishmania, microbiota and Lutzomyia longipalpis
Cited by: 15
Author(s): Thaís Bonifácio Campolina, Luís Eduardo Martinez Villegas, Carolina Cunha Monteiro, Paulo Filemon Paolucci Pimenta, Nágila Francinete Costa Secundino
Software Mentions: 1
Published: about 4 years ago
10.1002/mbo3.36
Abundance and short‐term temporal variability of fecal microbiota in healthy dogs
Cited by: 79
Author(s): José F. García-Mazcorro, Scot E. Dowd, Jeffrey Poulsen, Jörg M. Steiner, Jan S. Suchodolski
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pntd.0004650
Genetic Diversity and Reassortment of Hantaan Virus Tripartite RNA Genomes in Nature, the Republic of Korea
Cited by: 28
Author(s): Jeong Ah Kim, Won Keun Kim, Jin Sun No, Seung Ho Lee, Sook Young Lee, Ji Hye Kim, Jeong Hoon Kho, Dae-Sang Lee, Dong Hyun Song, Se Hun Gu, Seong Tae Jeong, Man Seong Park, Sang Hyun Kim, Terry A. Klein
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pntd.0003168
Crimean-Congo Hemorrhagic Fever Virus Clades V and VI (Europe 1 and 2) in Ticks in Kosovo, 2012
Cited by: 45
Author(s): Kurtesh Sherifi, Dániel Cadar, Skender Muji, Avni Robaj, Salih Ahmeti, Xhevat Jakupi, Petra Emmerich, Andreas Krüger
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pntd.0002360
An Epidemic of Dengue-1 in a Remote Village in Rural Laos
Cited by: 31
Author(s): Audrey Dubot‐Pérès, Phengta Vongphrachanh, Justin Denny, Rattanaphone Phetsouvanh, S. Linthavong, Bounthanom Sengkeopraseuth, Amphai Khasing, Vimattha Xaythideth, Catrin E. Moore, Manivanh Vongsouvath, Josée Castonguay-Vanier, Bountoy Sibounheuang, Thaksinaporn Taojaikong, Anisone Chanthongthip, Xavier de Lamballerie, Paul N. Newton
Software Mentions: 1
Published: over 11 years ago
10.1002/mbo3.241
Microbial diversity and abundance in the Xinjiang Luliang long‐term water‐flooding petroleum reservoir
Cited by: 71
Author(s): Peike Gao, Huimei Tian, Guoqiang Li, Hongwen Sun, Ting Ma
Software Mentions: 1
Published: almost 10 years ago
10.1186/1471-2164-15-607
Structural and functional diversity of free-living microorganisms in reef surface, Kra island, Thailand
Cited by: 13
Author(s): Naraporn Somboonna, Alisa Wilantho, Anunchai Assawamakin, Somchai Monanunsap, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Sissades Tongsima
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pgen.1002272
Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System
Cited by: 614
Author(s): James Angus Chandler, Jenna M. Lang, Srijak Bhatnagar, Jonathan A. Eisen, Artyom Kopp
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pgen.1000255
Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
Cited by: 772
Author(s): Susan M. Huse, Les Dethlefsen, Julie A. Huber, David B. Mark Welch, David A. Relman, Mitchell L. Sogin
Software Mentions: 1
Published: about 16 years ago
10.1002/mbo3.708
Effect of dietary fiber levels on bacterial composition with age in the cecum of meat rabbits
Cited by: 9
Author(s): Zhenyu Wu, Hailiang Zhou, Fuchang Li, Nan-bin Zhang, Yanli Zhu
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pcbi.0030014
Detecting Key Structural Features within Highly Recombined Genes
Cited by: 10
Author(s): John E. Wertz, Karen F. McGregor, Debra E. Bessen
Software Mentions: 1
Published: almost 18 years ago
10.1371/journal.pcbi.1004408
Detecting Horizontal Gene Transfer between Closely Related Taxa
Cited by: 42
Author(s): Orit Adato, Noga Ninyo, Uri Gophna, Sagi Snir
Software Mentions: 1
Published: about 9 years ago
10.1186/2042-5783-4-2
A systematic search for discriminating sites in the 16S ribosomal RNA gene
Cited by: 16
Author(s): Hilde Vinje, Trygve Almøy, Kristian Hovde Liland, Lars Snipen
Software Mentions: 1
Published: almost 11 years ago
10.14336/AD.2017.0902
The Role of Pulmonary and Systemic Immunosenescence in Acute Lung Injury
Cited by: 29
Author(s): Christina Brandenberger, Katharina Maria Kling, Marius Vital, Christian Mühlfeld
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pbio.3000131
Pathogen diversity drives the evolution of generalist MHC-II alleles in human populations
Cited by: 53
Author(s): Máté Manczinger, Gábor Boross, Lajos Kemény, Viktor Müller, Tobias L. Lenz, Balázs Papp, Csaba Pál
Software Mentions: 1
Published: almost 6 years ago
10.1099/mgen.0.000381
Microevolution in the major outer membrane protein OmpA of Acinetobacter baumannii
Cited by: 15
Author(s): Andrea Viale, Benjamin A. Evans
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pbio.0040234
Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts
Cited by: 394
Author(s): Matthew B. Sullivan, Debbie Lindell, Jessica A. Lee, Luke R. Thompson, Joseph P. Bielawski, Sallie W. Chisholm
Software Mentions: 1
Published: over 18 years ago
10.1264/jsme2.ME20137
Community Analysis-based Screening of Plant Growth-promoting Bacteria for Sugar Beet
Cited by: 14
Author(s): Kazuyuki Okazaki, Hirohito Tsurumaru, Megumi Hashimoto, Hiroyuki Takahashi, Takashi Okubo, Takuji Ohwada, Kiwamu Minamisawa, Seishi Ikeda
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-11-504
Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods
Cited by: 31
Author(s): Luz Adriana Sarmiento-Rubiano, Bernard Berger, D Moine, Manuel Zúñiga, Gaspar Pérez‐Martínez, Marı́a J. Yebra
Software Mentions: 1
Published: about 14 years ago
10.1264/jsme2.ME11347
Carbonate-Dissolving Bacteria from ‘Miliolite’, a Bioclastic Limestone, from Gopnath, Gujarat, Western India
Cited by: 11
Author(s): Gangavarapu Subrahmanyam, Ravi Vaghela, Nilesh Bhatt, G. Archana
Software Mentions: 1
Published: almost 13 years ago
10.3390/plants10061080
Distribution and Genetic Diversity of Grapevine Viruses in Russia
Cited by: 11
Author(s): E. V. Porotikova, Uliana Terehova, V. A. Volodin, E.G. Yurchenko, С. В. Виноградова
Software Mentions: 1
Published: over 3 years ago
10.3390/plants9121807
Genetic Diversity of Potyviruses Associated with Tulip Breaking Syndrome
Cited by: 3
Author(s): János Ágoston, Asztéria Almási, Katalin Salánki
Software Mentions: 1
Published: almost 4 years ago
10.1264/jsme2.ME16099
Bacterial Communities Associated with Different <i>Anthurium andraeanum</i> L. Plant Tissues
Cited by: 22
Author(s): Yohanna Sarria-Guzmán, Yosef Chávez-Romero, Selene Gómez-Acata, Joaquín A. Montes-Molina, Eleacin Morales-Salazar, Luc Dendooven, Yendi E. Navarro‐Noya
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2164-14-641
Alignment-free supervised classification of metagenomes by recursive SVM
Cited by: 31
Author(s): Henggang Cui, Xuegong Zhang
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12859-017-1670-4
A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy
Cited by: 130
Author(s): Xiang Gao, Huaiying Lin, Kashi Vishwanath Revanna, Qunfeng Dong
Software Mentions: 1
Published: over 7 years ago
10.3390/plants9111560
Loquat (Eriobotrya japonica) Is a New Natural Host of Apple Stem Pitting Virus
Cited by: 6
Author(s): Félix Morán, Célia Canales, Antonio Olmos, Ana Belén Ruiz-García
Software Mentions: 1
Published: about 4 years ago
10.3390/plants9040525
Low-Copy Genes in Terpenoid Metabolism: The Evolution and Expression of MVK and DXR Genes in Angiosperms
Cited by: 5
Author(s): Natacha Silva, Suzana Tiemi Ivamoto, Paula Oliveira Camargo, Raíssa Scalzoni Rosa, Luiz Filipe Protásio Pereira, Douglas Silva Domingues
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9010041
High-Throughput Sequencing Reveals Bell Pepper Endornavirus Infection in Pepper (Capsicum annum) in Slovakia and Enables Its Further Molecular Characterization
Cited by: 13
Author(s): Jana Tomašechová, Richard Hančinský, Lukáš Predajňa, Ján Kraic, Daniel Mihálik, Katarína Šoltýs, Silvia Vávrová, Miroslav Böhmer, Sead Sabanadzovic, Miroslav Glasa
Software Mentions: 1
Published: almost 5 years ago
10.1264/jsme2.ME15146
Morphological, Physiological, and Taxonomic Characterization of Actinobacterial Isolates Living as Endophytes of Cacao Pods and Cacao Seeds
Cited by: 19
Author(s): Romaric Armel Mouafo Tchinda, Thaddée Boudjeko, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Éric Tsala, Ernest Monga, Carole Beaulieu
Software Mentions: 1
Published: almost 9 years ago
10.1016/j.pmpp.2020.101473
Genomic analysis of Sweet potato feathery mottle virus from East Africa
Cited by: 6
Author(s): Godfrey Wokorach, Geoffrey Otim, Joyce Njuguna, Hilary Edema, Vincent Njung’e, Eunice Machuka, Nasser Yao, Francesca Stomeo, Richard Echodu
Software Mentions: 1
Published: over 4 years ago
10.1016/j.pmpp.2018.06.003
Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses
Cited by: 21
Author(s): Moritz Bömer, Ajith I. Rathnayake, Paul Visendi, Steven O Sewe, Juan Paolo A. Sicat, Gonçalo Silva, P. Lava Kumar, Susan Seal
Software Mentions: 1
Published: almost 6 years ago
10.1264/jsme2.ME15187
Effects of Land Use Changes from Paddy Fields on Soil Bacterial Communities in a Hilly and Mountainous Area
Cited by: 7
Author(s): Rokunuzzaman, Yuito Ueda, Li Chen, Sota Tanaka, Kouhei Ohnishi
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12859-018-2456-z
A statistical method to identify recombination in bacterial genomes based on SNP incompatibility
Cited by: 7
Author(s): Yi-Pin Lai, Thomas R. Ioerger
Software Mentions: 1
Published: almost 6 years ago
10.3390/v11111071
Survey and Characterization of Jingmen Tick Virus Variants
Cited by: 36
Author(s): Ender Dinçer, Sabri Hacıoğlu, Sırrı Kar, Nergis Emanet, Annika Brinkmann, Andreas Nitsche, Aykut Özkul, Yvonne‐Marie Linton, Koray Ergünay
Software Mentions: 1
Published: about 5 years ago
10.3390/v11090857
Highly Divergent Genetic Variants of Soricid-Borne Altai Virus (Hantaviridae) in Eurasia Suggest Ancient Host-Switching Events
Cited by: 11
Author(s): Hae Ji Kang, Se Hun Gu, L. N. Yashina, Joseph A. Cook, Richard Yanagihara
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.4114
Molecular evolution of virulence genes and non-virulence genes in clinical, natural and artificial environmental<i>Legionella pneumophila</i>isolates
Cited by: 6
Author(s): Xiao-Yong Zhan, Qing-Yi Zhu
Software Mentions: 1
Published: almost 7 years ago
10.1264/jsme2.ME11270
Actinobacteria Associated with the Marine Sponges &lt;i&gt;Cinachyra&lt;/i&gt; sp., &lt;i&gt;Petrosia&lt;/i&gt; sp., and &lt;i&gt;Ulosa&lt;/i&gt; sp. and Their Culturability
Cited by: 13
Author(s): Shams Tabrez Khan, Motoki Takagi, Kazuo Shin‐ya
Software Mentions: 1
Published: almost 13 years ago
10.7717/peerj.11585
<i>Clostridium butyricum</i> relieve the visceral hypersensitivity in mice induced by <i>Citrobacter rodentium</i> infection with chronic stress
Cited by: 3
Author(s): Tengfei Wang, Lixiang Li, Shiyang Li, Hongyu Zhao, Junyan Qu, Yong Xia, Yanqing Li
Software Mentions: 1
Published: over 3 years ago
10.1186/1475-2859-10-28
Lactococcus lactis M4, a potential host for the expression of heterologous proteins
Cited by: 27
Author(s): Nanyan Noreen, Wei Yeng Hooi, Ali Baradaran, Rosfarizan Mohamad, Chin Chin Sieo, Illias Rosli, Khatijah Yusoff, Abdul Rahim Raha
Software Mentions: 1
Published: over 13 years ago
10.1186/s12863-019-0775-3
Polymorphism of MHC class IIB in an acheilognathid species, Rhodeus sinensis shaped by historical selection and recombination
Cited by: 4
Author(s): Hyung‐Bae Jeon, Hari Won, Ho Young Suk
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.4845
Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on <i>coxI</i> DNA barcode
Cited by: 6
Author(s): Bachir Balech, Anna Sandionigi, Caterina Manzari, Emiliano Trucchi, Apollonia Tullo, Flavio Licciulli, Giorgio Grillo, Elisabetta Sbisà, Stefano Felici, Cecilia Saccone, Anna Maria D’Erchia, Donatella Cesaroni, Andrea Galimberti, Saverio Vicario
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.6496
Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework
Cited by: 62
Author(s): Gemma Henderson, Pelin Yilmaz, Shiv Kumar, Robert J. Forster, William J. Kelly, Sinead C. Leahy, Le Luo Guan, Peter H. Janssen
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.6297
Evolutionary insights of<i>Bean common mosaic necrosis virus</i>and<i>Cowpea aphid-borne mosaic virus</i>
Cited by: 7
Author(s): James Wainaina, Laura Kubatko, Jagger Harvey, Elijah Ateka, Timothy Makori, David Karanja, Laura M. Boykin, Monica A. Kehoe
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.5254
Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya
Cited by: 8
Author(s): James Wainaina, Elijah Ateka, Timothy Makori, Monica A. Kehoe, Laura M. Boykin
Software Mentions: 1
Published: over 6 years ago
10.1186/1475-2859-5-16
Performances and microbial features of an aerobic packed-bed biofilm reactor developed to post-treat an olive mill effluent from an anaerobic GAC reactor
Cited by: 12
Author(s): Lorenzo Bertin, Maria Chiara Colao, Maurizio Ruzzi, Léonardo Marchetti, Fabio Fava
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2156-14-29
Evolutionary history of black grouse major histocompatibility complex class IIB genes revealed through single locus sequence-based genotyping
Cited by: 15
Author(s): Tanja M. Strand, Biao Wang, Yvonne Meyer‐Lucht, Jacob Höglund
Software Mentions: 1
Published: over 11 years ago
10.7717/peerj.2326
Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes
Cited by: 47
Author(s): Vaishali P. Waman, Pandurang Kolekar, Mukund Ramtirthkar, Mohan Kale, Urmila Kulkarni‐Kale
Software Mentions: 1
Published: about 8 years ago
10.7717/peerj.8003
Genetic and phylogenetic analysis of Chinese sacbrood virus isolates from<i>Apis mellifera</i>
Cited by: 6
Author(s): Ming Li, Dongliang Fei, Li Sun, Mai‐Juan Ma
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.3480
Segal’s Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project
Cited by: 3
Author(s): James B. Pettengill, Hugh Rand
Software Mentions: 1
Published: over 7 years ago
10.1590/0074-02760150436
The microbiological signature of human cutaneous leishmaniasis lesions exhibits restricted bacterial diversity compared to healthy skin
Cited by: 26
Author(s): Vanessa Riesz Salgado, Artur T. L. Queiroz, Sabri Saeed Sanabani, Camila I. de Oliveira, Edgar M. Carvalho, Jackson Maurício Lopes Costa, Manoel Barral‐Netto, Aldina Barral
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.8576
Molecular characterization of two recombinant isolates of telosma mosaic virus infecting <i>Passiflora edulis</i> from Fujian Province in China
Cited by: 9
Author(s): Lixue Xie, Fangluan Gao, Jianguo Shen, Xiaoyan Zhang, Shan Zheng, Lijie Zhang, Tao Li
Software Mentions: 1
Published: over 4 years ago
10.3390/ma13214922
Metal Accumulation Using a Bacterium (K-142) Identified from Environmental Microorganisms by the Screening of Au Nanoparticles Synthesis
Cited by: 1
Author(s): Yiting Li, Michio Suzuki
Software Mentions: 1
Published: about 4 years ago
10.1186/1471-2156-14-96
Genetic structure of Trypanosoma cruziin Colombia revealed by a High-throughput Nuclear Multilocus Sequence Typing (nMLST) approach
Cited by: 34
Author(s): Juan David Ramírez, Gabriela Tapia-Calle, Felipe Guhl
Software Mentions: 1
Published: about 11 years ago