Ecosyste.ms: Papers

10.3390/v13040664

Genotyping and Molecular Characterization of Classical Swine Fever Virus Isolated in China during 2016–2018
Cited by: 10
Author(s): Madiha Fatima, Yuzi Luo, Li Zhang, Pengying Wang, Hao Song, Yan-Hui Fu, Yongfeng Li, Yuan Sun, Su Li, Youmei Bao, Hua‐Ji Qiu
Software Mentions: 1
Published: over 3 years ago

10.3390/v13050737

Genetic Diversity of Rice stripe necrosis virus and New Insights into Evolution of the Genus Benyvirus
Cited by: 9
Author(s): Issiaka Faféré Bagayoko, Marcos Giovani Celli, Gustavo Romay, Nils Poulicard, Agnès Pinel‐Galzi, Charlotte Julian, Denis Filloux, Denis Filloux, Drissa Sérémé, Claude Bragard, Eugénie Hébrard
Software Mentions: 1
Published: over 3 years ago

10.3390/v13050810

Identification of the Begomoviruses Squash Leaf Curl Virus and Watermelon Chlorotic Stunt Virus in Various Plant Samples in North America
Cited by: 3
Author(s): Rafaela S. Fontenele, Amulya Bhaskara, Ilaria N. Cobb, Lucas C. Majure, Andrew M. Salywon, Jesús Aarón Ávalos-Calleros, Gerardo R. Argüello‐Astorga, Kara Schmidlin, Denis Filloux, S. G. Ribeiro, Simona Kraberger, Darren P. Martin, Pierre Lefeuvre, Arvind Varsani
Software Mentions: 1
Published: over 3 years ago

10.3390/v13061083

Molecular Investigation of Canine Parvovirus-2 (CPV-2) Outbreak in Nevis Island: Analysis of the Nearly Complete Genomes of CPV-2 Strains from the Caribbean Region
Cited by: 6
Author(s): Kerry Gainor, April Bowen, Pompei Bolfă, Andrea Peda, Yashpal Singh Malik, Souvik Ghosh
Software Mentions: 1
Published: over 3 years ago

10.3390/v13061029

Characterization of a Novel SARS-CoV-2 Genetic Variant with Distinct Spike Protein Mutations
Cited by: 4
Author(s): А. С. Гладких, Anna Dolgova, Vladimir G. Dedkov, Valeriya Sbarzaglia, Olga Kanaeva, А. Yu. Popova, Арег А. Тотолян
Software Mentions: 1
Published: over 3 years ago

10.3390/v13071322

Whole-Genome Sequence Analysis of Pseudorabies Virus Clinical Isolates from Pigs in China between 2012 and 2017 in China
Cited by: 9
Author(s): Ruiming Hu, Leyi Wang, Qingyun Liu, Hua Lin, Xi Huang, Yue Zhang, Jie Fan, Hongjian Chen, Wenbo Song, Wan Liang, Nengshui Ding, Zuohua Li, Zhen Ding, Xibiao Tang, Zhong Peng, Bin Wu
Software Mentions: 1
Published: over 3 years ago

10.3390/v13081525

The Algerian Chapter of SARS-CoV-2 Pandemic: An Evolutionary, Genetic, and Epidemiological Prospect
Cited by: 2
Author(s): Safia Zeghbib, B Somogyi, Brigitta Zana, Gábor Kemenesi, Róbert Herczeg, Fawzi Derrar, Ferenc Jakab
Software Mentions: 1
Published: over 3 years ago

10.3390/v13091700

Detection and Complete Genome Analysis of Circoviruses and Cycloviruses in the Small Indian Mongoose (Urva auropunctata): Identification of Novel Species
Cited by: 10
Author(s): Kerry Gainor, Anne A.M.J. Becker, Yashpal Singh Malik, Souvik Ghosh
Software Mentions: 1
Published: about 3 years ago

10.3390/v13091714

Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster)
Cited by: 13
Author(s): Ajani Athukorala, David N. Phalen, Ashutosh Das, Karla J. Helbig, Jade K. Forwood, Subir Sarker
Software Mentions: 1
Published: about 3 years ago

10.3390/v13091728

Prevalence and Molecular Characterization of Human Bocavirus Detected in Croatian Children with Respiratory Infection
Cited by: 5
Author(s): Sunčanica Ljubin‐Sternak, Anamarija Slović, Maja Mijač, Miljenko Jurković, Dubravko Forčić, Irena Ivković‐Jureković, Tatjana Tot, Jasmina Vraneš
Software Mentions: 1
Published: about 3 years ago

10.1186/s13071-017-2459-z

Population genetics of Enterocytozoon bieneusi in captive giant pandas of China
Cited by: 15
Author(s): Wei Li, Yuan Shi, Zhijun Zhong, Huang Xiao-hong, Chengdong Wang, Caiwu Li, Haidi Yang, Haifeng Liu, Zhihua Ren, Jingchao Lan, Kui Wu, Guangneng Peng
Software Mentions: 1
Published: about 7 years ago

10.3390/pathogens9060457

Genetic Diversity of Porcine Circovirus Isolated from Korean Wild Boars
Cited by: 9
Author(s): Sok Song, Gyunam Park, SeEun Choe, Ra Mi, Song-Yi Kim, Bang-Hun Hyun, Bong‐Kyun Park, Dong-Jun An
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens10030322

Genetic Variation in the Glycoprotein B Sequence of Equid Herpesvirus 5 among Horses of Various Breeds at Polish National Studs
Cited by: 3
Author(s): Karol Stasiak, Magdalena Dunowska, Steven A. Trewick, J. Rola
Software Mentions: 1
Published: over 3 years ago

10.3390/pathogens9030240

Evolutionary Trajectory for the Emergence of Novel Coronavirus SARS-CoV-2
Cited by: 166
Author(s): Saif ur Rehman, Laiba Shafique, Awais Ihsan, Qingyou Liu
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens8040185

Genetic Analysis of Avian Gyrovirus 2 Variant-Related Gyrovirus Detected in Farmed King Ratsnake (Elaphe carinata): The First Report from China
Cited by: 6
Author(s): Qianqian Wu, Xin Xu, Qinxi Chen, Jun Ji, Yunchao Kan, Lunguang Yao, Qingmei Xie
Software Mentions: 1
Published: about 5 years ago

10.3390/pathogens9030183

Phylogenetic Analysis of Belgian Small Ruminant Lentiviruses Supports Cross Species Virus Transmission and Identifies New Subtype B5 Strains
Cited by: 28
Author(s): Rodolphe Michiels, Nadjah Radia Adjadj, Nick De Regge
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens10040447

Multilocus Sequence Analysis of Selected Housekeeping- and Pathogenicity-Related Genes in Venturia inaequalis
Cited by: 1
Author(s): Monika Michalecka, Joanna Puławska
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.4550

Genetic diversity and molecular evolution of<i>Ornithogalum mosaic virus</i>based on the coat protein gene sequence
Cited by: 11
Author(s): Fangluan Gao, Zhenguo Du, Jianguo Shen, Hongkai Yang, Furong Liao
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.4476

Detection of PCV2e strains in Southeast China
Cited by: 32
Author(s): Jian-Kui Liu, Cheng Wei, Ailing Dai, Zhifeng Lin, Kewei Fan, Jianlin Fan, Jiayue Liu, Luo Man-lin, Xiaoyan Yang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.2917

Polymorphism in the major histocompatibility complex (MHC class II B) genes of the Rufous-backed Bunting (<i>Emberiza jankowskii</i>)
Cited by: 9
Author(s): Dan Li, Keping Sun, Yunjiao Zhao, Aiqing Lin, Shi Li, Ying Jiang, Jiang Feng
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.2933

Sequence variability of<i>Chrysanthemum stunt viroid</i>in different chrysanthemum cultivars
Cited by: 6
Author(s): Hoseong Choi, Yeonhwa Jo, Ju-Yeon Yoon, Seung‐Kook Choi, Won Kyong Cho
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.8576

Molecular characterization of two recombinant isolates of telosma mosaic virus infecting <i>Passiflora edulis</i> from Fujian Province in China
Cited by: 9
Author(s): Lixue Xie, Fangluan Gao, Jianguo Shen, Xiaoyan Zhang, Shan Zheng, Lijie Zhang, Tao Li
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.3480

Segal’s Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project
Cited by: 3
Author(s): James B. Pettengill, Hugh Rand
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.8003

Genetic and phylogenetic analysis of Chinese sacbrood virus isolates from<i>Apis mellifera</i>
Cited by: 6
Author(s): Ming Li, Dongliang Fei, Li Sun, Mai‐Juan Ma
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.2326

Analysis of genotype diversity and evolution of Dengue virus serotype 2 using complete genomes
Cited by: 47
Author(s): Vaishali P. Waman, Pandurang Kolekar, Mukund Ramtirthkar, Mohan Kale, Urmila Kulkarni‐Kale
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.5254

Phylogenomic relationship and evolutionary insights of sweet potato viruses from the western highlands of Kenya
Cited by: 8
Author(s): James Wainaina, Elijah Ateka, Timothy Makori, Monica A. Kehoe, Laura M. Boykin
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6297

Evolutionary insights of<i>Bean common mosaic necrosis virus</i>and<i>Cowpea aphid-borne mosaic virus</i>
Cited by: 7
Author(s): James Wainaina, Laura Kubatko, Jagger Harvey, Elijah Ateka, Timothy Makori, David Karanja, Laura M. Boykin, Monica A. Kehoe
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.6496

Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework
Cited by: 62
Author(s): Gemma Henderson, Pelin Yilmaz, Shiv Kumar, Robert J. Forster, William J. Kelly, Sinead C. Leahy, Le Luo Guan, Peter H. Janssen
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.4845

Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on <i>coxI</i> DNA barcode
Cited by: 6
Author(s): Bachir Balech, Anna Sandionigi, Caterina Manzari, Emiliano Trucchi, Apollonia Tullo, Flavio Licciulli, Giorgio Grillo, Elisabetta Sbisà, Stefano Felici, Cecilia Saccone, Anna Maria D’Erchia, Donatella Cesaroni, Andrea Galimberti, Saverio Vicario
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11585

<i>Clostridium butyricum</i> relieve the visceral hypersensitivity in mice induced by <i>Citrobacter rodentium</i> infection with chronic stress
Cited by: 3
Author(s): Tengfei Wang, Lixiang Li, Shiyang Li, Hongyu Zhao, Junyan Qu, Yong Xia, Yanqing Li
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.4114

Molecular evolution of virulence genes and non-virulence genes in clinical, natural and artificial environmental<i>Legionella pneumophila</i>isolates
Cited by: 6
Author(s): Xiao-Yong Zhan, Qing-Yi Zhu
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.pmpp.2018.06.003

Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses
Cited by: 21
Author(s): Moritz Bömer, Ajith I. Rathnayake, Paul Visendi, Steven O Sewe, Juan Paolo A. Sicat, Gonçalo Silva, P. Lava Kumar, Susan Seal
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.pmpp.2020.101473

Genomic analysis of Sweet potato feathery mottle virus from East Africa
Cited by: 6
Author(s): Godfrey Wokorach, Geoffrey Otim, Joyce Njuguna, Hilary Edema, Vincent Njung’e, Eunice Machuka, Nasser Yao, Francesca Stomeo, Richard Echodu
Software Mentions: 1
Published: over 4 years ago

10.3390/plants9010041

High-Throughput Sequencing Reveals Bell Pepper Endornavirus Infection in Pepper (Capsicum annum) in Slovakia and Enables Its Further Molecular Characterization
Cited by: 13
Author(s): Jana Tomašechová, Richard Hančinský, Lukáš Predajňa, Ján Kraic, Daniel Mihálik, Katarína Šoltýs, Silvia Vávrová, Miroslav Böhmer, Sead Sabanadzovic, Miroslav Glasa
Software Mentions: 1
Published: almost 5 years ago

10.3390/plants9040525

Low-Copy Genes in Terpenoid Metabolism: The Evolution and Expression of MVK and DXR Genes in Angiosperms
Cited by: 5
Author(s): Natacha Silva, Suzana Tiemi Ivamoto, Paula Oliveira Camargo, Raíssa Scalzoni Rosa, Luiz Filipe Protásio Pereira, Douglas Silva Domingues
Software Mentions: 1
Published: over 4 years ago

10.3390/plants9111560

Loquat (Eriobotrya japonica) Is a New Natural Host of Apple Stem Pitting Virus
Cited by: 6
Author(s): Félix Morán, Célia Canales, Antonio Olmos, Ana Belén Ruiz-García
Software Mentions: 1
Published: about 4 years ago

10.3390/plants9121807

Genetic Diversity of Potyviruses Associated with Tulip Breaking Syndrome
Cited by: 3
Author(s): János Ágoston, Asztéria Almási, Katalin Salánki
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants10061080

Distribution and Genetic Diversity of Grapevine Viruses in Russia
Cited by: 11
Author(s): E. V. Porotikova, Uliana Terehova, V. A. Volodin, E.G. Yurchenko, С. В. Виноградова
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.0040234

Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts
Cited by: 394
Author(s): Matthew B. Sullivan, Debbie Lindell, Jessica A. Lee, Luke R. Thompson, Joseph P. Bielawski, Sallie W. Chisholm
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pbio.3000131

Pathogen diversity drives the evolution of generalist MHC-II alleles in human populations
Cited by: 53
Author(s): Máté Manczinger, Gábor Boross, Lajos Kemény, Viktor Müller, Tobias L. Lenz, Balázs Papp, Csaba Pál
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1004408

Detecting Horizontal Gene Transfer between Closely Related Taxa
Cited by: 42
Author(s): Orit Adato, Noga Ninyo, Uri Gophna, Sagi Snir
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pcbi.0030014

Detecting Key Structural Features within Highly Recombined Genes
Cited by: 10
Author(s): John E. Wertz, Karen F. McGregor, Debra E. Bessen
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pgen.1000255

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
Cited by: 772
Author(s): Susan M. Huse, Les Dethlefsen, Julie A. Huber, David B. Mark Welch, David A. Relman, Mitchell L. Sogin
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pgen.1002272

Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System
Cited by: 614
Author(s): James Angus Chandler, Jenna M. Lang, Srijak Bhatnagar, Jonathan A. Eisen, Artyom Kopp
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pntd.0002360

An Epidemic of Dengue-1 in a Remote Village in Rural Laos
Cited by: 31
Author(s): Audrey Dubot‐Pérès, Phengta Vongphrachanh, Justin Denny, Rattanaphone Phetsouvanh, S. Linthavong, Bounthanom Sengkeopraseuth, Amphai Khasing, Vimattha Xaythideth, Catrin E. Moore, Manivanh Vongsouvath, Josée Castonguay-Vanier, Bountoy Sibounheuang, Thaksinaporn Taojaikong, Anisone Chanthongthip, Xavier de Lamballerie, Paul N. Newton
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pntd.0003168

Crimean-Congo Hemorrhagic Fever Virus Clades V and VI (Europe 1 and 2) in Ticks in Kosovo, 2012
Cited by: 45
Author(s): Kurtesh Sherifi, Dániel Cadar, Skender Muji, Avni Robaj, Salih Ahmeti, Xhevat Jakupi, Petra Emmerich, Andreas Krüger
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pntd.0004650

Genetic Diversity and Reassortment of Hantaan Virus Tripartite RNA Genomes in Nature, the Republic of Korea
Cited by: 28
Author(s): Jeong Ah Kim, Won Keun Kim, Jin Sun No, Seung Ho Lee, Sook Young Lee, Ji Hye Kim, Jeong Hoon Kho, Dae-Sang Lee, Dong Hyun Song, Se Hun Gu, Seong Tae Jeong, Man Seong Park, Sang Hyun Kim, Terry A. Klein
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0008666

Tripartite interactions: Leishmania, microbiota and Lutzomyia longipalpis
Cited by: 15
Author(s): Thaís Bonifácio Campolina, Luís Eduardo Martinez Villegas, Carolina Cunha Monteiro, Paulo Filemon Paolucci Pimenta, Nágila Francinete Costa Secundino
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pntd.0003494

The Emergence of Resistance to the Benzimidazole Anthlemintics in Parasitic Nematodes of Livestock Is Characterised by Multiple Independent Hard and Soft Selective Sweeps
Cited by: 113
Author(s): Elizabeth Redman, Fiona Whitelaw, Andrew Tait, Charlotte G.S. Burgess, Yvonne Bartley, Philip Skuce, F. Jackson, John S. Gilleard
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pntd.0000752

High Rates of Homologous Recombination in the Mite Endosymbiont and Opportunistic Human Pathogen Orientia tsutsugamushi
Cited by: 49
Author(s): Piengchan Sonthayanon, Sharon J. Peacock, Wirongrong Chierakul, Vanaporn Wuthiekanun, Stuart D. Blacksell, Matthew T. G. Holden, Stephen D. Bentley, Edward J. Feil, Nicholas P. J. Day
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pntd.0000945

Geo-spatial Hotspots of Hemorrhagic Fever with Renal Syndrome and Genetic Characterization of Seoul Variants in Beijing, China
Cited by: 35
Author(s): Shimin Zuo, Li‐Qun Fang, Zhan Li, Pan-He Zhang, Jia-Fu Jiang, Liping Wang, Jiaqi Ma, Bingcai Wang, Ri-min Wang, Xiaoming Wu, Hong Yang, Zhen Cao, Wu‐Chun Cao
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pntd.0005408

Diversification of Orientia tsutsugamushi genotypes by intragenic recombination and their potential expansion in endemic areas
Cited by: 53
Author(s): Kwanghun Kim, Na Young Ha, Chan Ki Min, Hong Il Kim, Nguyen Thi Hai Yen, Keun Hwa Lee, Inbo Oh, Jae Seung Kang, Myung Sik Choi, Ik Sang Kim, Nam Hyuk Cho
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0002695

Multilocus Sequence Analysis for Leishmania braziliensis Outbreak Investigation
Cited by: 22
Author(s): Mariel Marlow, Mariana Côrtes Boité, Gabriel Eduardo Melim Ferreira, Mário Steindel, Elisa Cupolillo
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pntd.0001049

Multilocus Sequence Typing (MLST) for Lineage Assignment and High Resolution Diversity Studies in Trypanosoma cruzi
Cited by: 95
Author(s): Matthew Yeo, Isabel Maurício, Louisa A. Messenger, Michael D. Lewis, Martin S. Llewellyn, Nidia Acosta, Tapan Bhattacharyya, Patricio Diosque, Hernán J. Carrasco, Michael A. Miles
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pntd.0005159

Archival Isolates Confirm a Single Topotype of West Nile Virus in Australia
Cited by: 3
Author(s): Bixing Huang, Natalie A. Prow, Andrew F. van den Hurk, Richard J. N. Allcock, Peter W. Moore, Stephen L. Doggett, David Warrilow
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pntd.0006670

Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic
Cited by: 22
Author(s): Yi Tan, Brett E. Pickett, Susmita Shrivastava, Lionel Gresh, Ángel Balmaseda, Paolo Amedeo, Lihui Hu, Vinita Puri, Nadia Fedorova, Rebecca Halpin, Matthew P. LaPointe, Marshall Cone, Lea Heberlein-Larson, Laura D. Kramer, Alexander T. Ciota, Aubree Gordon, Reed S. Shabman, Suman Das, Eva Harris
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0008049

Genomic epidemiological characteristics of dengue fever in Guangdong province, China from 2013 to 2017
Cited by: 8
Author(s): Bo Sun, Xin Zhang, Huan Zhang, Haizhou Liu, Li Sun, Qiqi Tan, Mifang Liang, De Wu, Di Liu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0081136

Origin and Characteristics of Internal Genes Affect Infectivity of the Novel Avian-Origin Influenza A (H7N9) Virus
Cited by: 20
Author(s): Feng Yan, Haiyan Mao, Chang-ping Xu, Jianmin Jiang, Yin Chen, Juying Yan, Jian Gao, Zhen Li, Shichang Xia, Yi‐Yu Lu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0082857

The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation
Cited by: 14
Author(s): Gernot Glöckner, Ivonne Heinze, Matthias Platzer, Christoph Held, Doris Abele
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0035279

Methanocella conradii sp. nov., a Thermophilic, Obligate Hydrogenotrophic Methanogen, Isolated from Chinese Rice Field Soil
Cited by: 53
Author(s): Zhe Lü, Yahai Lu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0078970

High Levels of Multiple Infections, Recombination and Horizontal Transmission of Wolbachia in the Andricus mukaigawae (Hymenoptera; Cynipidae) Communities
Cited by: 36
Author(s): Xiaohui Yang, Dao‐Hong Zhu, Zhiwei Liu, Ling Zhao, Cheng‐Yuan Su
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0005288

Complex Evolution of a Y-Chromosomal Double Homeobox 4 (DUX4)-Related Gene Family in Hominoids
Cited by: 6
Author(s): Julia Schmidt, Stefan Kirsch, Gudrun Rappold, Werner Schempp
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0003660

Pilus Operon Evolution in Streptococcus pneumoniae Is Driven by Positive Selection and Recombination
Cited by: 21
Author(s): Alessandro Muzzi, Monica Moschioni, Antonello Covacci, Rino Rappuoli, Claudio Donati
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0002910

Evidence from GC-TRFLP that Bacterial Communities in Soil Are Lognormally Distributed
Cited by: 11
Author(s): James R. Doroghazi, Daniel H. Buckley
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0026846

Clinical Validation of Integrated Nucleic Acid and Protein Detection on an Electrochemical Biosensor Array for Urinary Tract Infection Diagnosis
Cited by: 56
Author(s): Ruchika Mohan, Kathleen E. Mach, Moran Bercovici, Yuxin Pan, Lakshmi Dhulipala, Pak Kin Wong, Joseph C. Liao
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0015950

Monitoring the Long-Term Molecular Epidemiology of the Pneumococcus and Detection of Potential ‘Vaccine Escape’ Strains
Cited by: 7
Author(s): Gagan A. Pandya, M. Catherine McEllistrem, Pratap Venepally, Megan E. Holmes, Behnam Jarrahi, Ravi Sanka, Lingyun Jia, Svetlana Karamycheva, Yun Bai, Robert Fleischmann, Scott N. Peterson
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0063380

Phylogenetic and Recombination Analysis of Tomato Spotted Wilt Virus
Cited by: 54
Author(s): Sen Lian, Jong-Seung Lee, Won Kyong Cho, Jisuk Yu, Mi-Kyeong Kim, Hongsoo Choi, Kook‐Hyung Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0231886

Dominance of recombinant cotton leaf curl Multan-Rajasthan virus associated with cotton leaf curl disease outbreak in northwest India
Cited by: 19
Author(s): Kajal Biswas, Utpal Kumar Bhattacharyya, Supratik Palchoudhury, Nenavath Balram, Anil Kumar, R. Arora, S. K. Sain, Pradeep Kumar, Ravi K Khetarpal, Amitava Sanyal, Pranab Kumar Mandal
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0253622

Genetic characterization and phylogenetic analysis of porcine epidemic diarrhea virus in Guangdong, China, between 2018 and 2019
Cited by: 14
Author(s): Feng Wen, Jing Yang, Anqi Li, Zhijuan Gong, Lulu Yang, Qing Cheng, Congying Wang, Mengmeng Zhao, Sheng Yuan, Yao Chen, Saeed El‐Ashram, Yong Li, Hai Yu, Jianming Guo, Shujian Huang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0076413

New Avian Paramyxoviruses Type I Strains Identified in Africa Provide New Outcomes for Phylogeny Reconstruction and Genotype Classification
Cited by: 46
Author(s): Renata Servan de Almeida, Saliha Hammoumi, Patricia Gil, François-Xavier Briand, Sophie Molia, Nicolas Gaidet, Julien Cappelle, Véronique Chevalier, Gilles Balança, Abdallah Traoré, Colette Grillet, Olivier Fridolin Maminiaina, Samia Guendouz, Marthin Dakouo, K. Samaké, Ould El Mamy Bezeid, Abbas Diarra, Hassen Chaka, Flavie Goutard, Peter N. Thompson, Dominique Martinez, Véronique Jestin, Emmanuel Albina
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0053115

Pyrosequencing the Canine Faecal Microbiota: Breadth and Depth of Biodiversity
Cited by: 70
Author(s): Daniel Hand, Corrin Wallis, Alison Colyer, Charles W. Penn
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0125853

Evaluation of a Phylogenetic Marker Based on Genomic Segment B of Infectious Bursal Disease Virus: Facilitating a Feasible Incorporation of this Segment to the Molecular Epidemiology Studies for this Viral Agent
Cited by: 23
Author(s): Abdulahi Alfonso-Morales, Liliam Ríos, Orlando Martínez-Pérez, Roser Dolz, Rosa Valle, Carmen Laura Perera, Kateri Bertran, Maria Teresa Frı́as, Llilianne Ganges, Heidy Dı́az de Arce, Natàlia Majó, José I. Núñez, Lester J. Pérez
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0040467

Testing the Limits of 454 Pyrotag Sequencing: Reproducibility, Quantitative Assessment and Comparison to T-RFLP Fingerprinting of Aquifer Microbes
Cited by: 135
Author(s): Giovanni Pilloni, Michael S. Granitsiotis, Marion Engel, Tillmann Lueders
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0064718

Evolution of Smooth Tubercle Bacilli PE and PE_PGRS Genes: Evidence for a Prominent Role of Recombination and Imprint of Positive Selection
Cited by: 17
Author(s): Amine Namouchi, Anis Karboul, M. Fabre, María Cristina Gutiérrez, Helmi Mardassi
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0073778

Population Structure of Manganese-Oxidizing Bacteria in Stratified Soils and Properties of Manganese Oxide Aggregates under Manganese–Complex Medium Enrichment
Cited by: 36
Author(s): Wei Yang, Zhen Zhang, Zhongming Zhang, Hong Chen, Jin Liu, Muhammad Ali, Fan Liu, Li Lin
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0027961

Lysate of Probiotic Lactobacillus casei DN-114 001 Ameliorates Colitis by Strengthening the Gut Barrier Function and Changing the Gut Microenvironment
Cited by: 162
Author(s): Zuzana Jirásková Zákostelská, Miloslav Kverka, Klára Klimešová, P Rossmann, Jakub Mrázek, J. Kopečný, Michaela Hornová, Dagmar Šrůtková, Tomáš Hudcovic, Jakub Rídl, Helena Tlaskalová‐Hogenová
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0152251

Molecular and Phenotypic Characterization of a Highly Evolved Type 2 Vaccine-Derived Poliovirus Isolated from Seawater in Brazil, 2014
Cited by: 16
Author(s): Klécia Marília Soares de Melo Cassemiro, Fernanda Marcicano Burlandy, Mikaela Renata Funada Barbosa, Qi Chen, Jaume Jorba, Elayse Maria Hachich, Maria Inês Z. Sato, Cara C. Burns, Edson E. da Silva
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0082221

A Distinct and Divergent Lineage of Genomic Island-Associated Type IV Secretion Systems in Legionella
Cited by: 16
Author(s): Bryan A. Wee, Megan Woolfit, Scott A. Beatson, Nicola K. Petty
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0026988

Altering Host Resistance to Infections through Microbial Transplantation
Cited by: 153
Author(s): Benjamin P. Willing, Anjalee Vacharaksa, Matthew A. Croxen, Teerawat Thanachayanont, B. Brett Finlay
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0108015

Genetic Diversity and Evolution of Satellite RNAs Associated with the Bamboo Mosaic Virus
Cited by: 9
Author(s): Ing-Nang Wang, Chung-Chi Hu, Ching-Wei Lee, Sih-Min Yen, Wen-Bing Yeh, Yau‐Heiu Hsu, Na-Sheng Lin
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0146307

Macroalgal Morphogenesis Induced by Waterborne Compounds and Bacteria in Coastal Seawater
Cited by: 59
Author(s): Jan Grueneberg, Aschwin H. Engelen, Rodrigo Costa, Thomas Wichard
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0095056

The Bacterial Communities Associated with Honey Bee (Apis mellifera) Foragers
Cited by: 220
Author(s): Vanessa Corby‐Harris, Patrick Maes, Kirk E. Anderson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0022702

Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome
Cited by: 168
Author(s): Christopher D. Sibley, Margot E. Grinwis, Tyler R. Field, Christina S. Eshaghurshan, Monica Martins Pereira Faria, Scot E. Dowd, Michael D. Parkins, Harvey Rabin, Michael G. Surette
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0151351

Effects of Temperature on Bacterial Communities and Metabolites during Fermentation of Myeolchi-Aekjeot, a Traditional Korean Fermented Anchovy Sauce
Cited by: 29
Author(s): Ji Young Jung, Hyo‐Jung Lee, Byung Hee Chun, Che Ok Jeon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0036570

Detection of Retroviral Super-Infection from Non-Invasive Samples
Cited by: 4
Author(s): Adeelia S. Goffe, Anja Blasse, Roger Mundry, Fabian H. Leendertz, Sébastien Calvignac‐Spencer
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0166744

Phylogeography of Crimean Congo Hemorrhagic Fever Virus
Cited by: 41
Author(s): Alexander N. Lukashev, Alexander S. Klimentov, S E Smirnova, Tamara K. Dzagurova, Jan Felix Drexler, Anatoly P. Gmyl
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0004002

Fine-Scale Phylogeographic Structure of Borrelia lusitaniae Revealed by Multilocus Sequence Typing
Cited by: 36
Author(s): Liliana Vitorino, Gabriele Margos, Edward J. Feil, Margarida Collares-Pereira, Líbia Zé-Zé, Klaus Kurtenbach
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0006669

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine
Cited by: 722
Author(s): Marcus J. Claesson, Órla O'Sullivan, Qiong Wang, Janne Nikkilä, Julian R. Marchesi, Hauke Smidt, Willem M. de Vos, R. Paul Ross, Paul W. O’Toole
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0003239

Evidence of Recombination in Intrapatient Populations of Hepatitis C Virus
Cited by: 61
Author(s): Vicente Sentandreu, Nuria Jiménez‐Hernández, Manuela Torres-Puente, María Alma Bracho, Ana Mellado Valero, María José Gosalbes, Enrique Ortega, Andrés Moya, Fernando González‐Candelas
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0036298

Bacterial Communities of the Coronal Sulcus and Distal Urethra of Adolescent Males
Cited by: 174
Author(s): David E. Nelson, Qunfeng Dong, Barbara Van Der Pol, David E. Nelson, Baochao Fan, Barry P. Katz, Deming Mi, Ruichen Rong, George M. Weinstock, Erica Sodergren, J. Dennis Fortenberry
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0076185

Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment
Cited by: 81
Author(s): Feng Guo, Feng Ju, Chunye Lin, Tong Zhang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0035587

Dobrava-Belgrade Hantavirus from Germany Shows Receptor Usage and Innate Immunity Induction Consistent with the Pathogenicity of the Virus in Humans
Cited by: 32
Author(s): Елена Попугаева, Peter T. Witkowski, Mathias Schlegel, Rainer G. Ulrich, Brita Auste, Andreas Rang, Detlev H. Krüger, Boris Klempa
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0013432

Nodeomics: Pathogen Detection in Vertebrate Lymph Nodes Using Meta-Transcriptomics
Cited by: 24
Author(s): Nicola E. Wittekindt, Abinash Padhi, Stephan C. Schuster, Ji Qi, Fangqing Zhao, Lynn P. Tomsho, Lindsay R. Kasson, Michael D. Packard, Paul C. Cross, Mary Poss
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0028259

Influence of Conserved and Hypervariable Genetic Markers on Genotyping Circulating Strains of Neisseria gonorrhoeae
Cited by: 10
Author(s): Sinisa Vidović, Greg B. Horsman, Mingmin Liao, J A Dillon
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0103545

High Diversity of Hepatitis B Virus Genotypes in Panamanian Blood Donors: A Molecular Analysis of New Variants
Cited by: 12
Author(s): Alexander A. Martínez, Yamitzel Zaldívar, Zoila de Castillo, Alma Ortiz, Yaxelis Mendoza, Juan Cristina, Juan Miguel Pascale
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0205990

Biocompatibility and biodegradability of polyacrylate/ZnO nanocomposite during the activated sludge treatment process
Cited by: 4
Author(s): Chao Zhu, Huiqin Wang, Zarak Mahmood, Qing Wang, Hongwen Ma
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0207560

Characterization of oral microbiota in marmosets: Feasibility of using the marmoset as a human oral disease model
Cited by: 9
Author(s): Sachiko Takehara, Jorge L. Zeredo, Yasuhiro Kumei, Kensuke Kagiyama, Kazumasa Fukasawa, Akiko Oshiro, Masashi Ueno, Noriko Kojimahara, Shunsuke Minakuchi, Yoko Kawaguchi
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0002836

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
Cited by: 894
Author(s): Anders F. Andersson, Mathilda Lindberg, Hedvig E. Jakobsson, Fredrik Bäckhed, Pål Nyrén, Lars Engstrand
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0034242

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters
Cited by: 435
Author(s): Susan M. Huse, Yuzhen Ye, Yanjiao Zhou, Anthony A. Fodor
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0047671

Microbial Diversity of Bovine Mastitic Milk as Described by Pyrosequencing of Metagenomic 16s rDNA
Cited by: 136
Author(s): Georgios Oikonomou, Vinicius Machado, Carlos Santisteban, Y.H. Schukken, R.C. Bicalho
Software Mentions: 1
Published: about 12 years ago