Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: RColorBrewer

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RColorBrewer

ColorBrewer Palettes
13 versions
Latest release: over 2 years ago
716 dependent packages
776,833 downloads last month

Papers Mentioning RColorBrewer 490

10.3390/cancers13030365
Genome-Wide Circular RNA Expression Patterns Reflect Resistance to Immunomodulatory Drugs in Multiple Myeloma Cells
Cited by: 18
Author(s): Theresa Jakobsen, Mette Dahl, Konstantinos Dimopoulos, Kirsten Grønbæk, Jørgen Kjems, Lasse Sommer Kristensen
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12964-019-0326-6
Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells
Cited by: 11
Author(s): Jaime Santo‐Domingo, Antonio Núñez Galindo, Ornella Cominetti, Umberto De Marchi, Pedro R. Cutillas, Loïc Dayon, Andreas Wiederkehr
Software Mentions: 5
Published: almost 6 years ago
10.1371/journal.pone.0246544
Swab pooling: A new method for large-scale RT-qPCR screening of SARS-CoV-2 avoiding sample dilution
Cited by: 21
Author(s): Ana Paula Christoff, Giuliano Netto Flores Cruz, Aline Fernanda Rodrigues Sereia, Dellyana Rodrigues Boberg, Daniela Carolina de Bastiani, Laís Eiko Yamanaka, Gislaine Fongaro, Patrícia Hermes Stoco, Maria Luiza Bazzo, Edmundo C. Grisard, Camila Hernandes, Luiz Felipe Valter de Oliveira
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0224560
Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598
Cited by: 13
Author(s): Maryna Vasylkivska, Katerina Jureckova, Barbora Branská, Karel Sedlář, Jan Kolek, Ivo Provazník, Petra Patáková
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0249065
Oxazepam and cognitive reappraisal: A randomised experiment
Cited by: 0
Author(s): Gustav Nilsonne, Sandra Tamm, Armita Golkar, Andreas Olsson, Karolina Sörman, Katarina Howner, Marianne Kristiansson, Martin Ingvar, Predrag Petrović
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0188842
Markers of epithelial-to-mesenchymal transition reflect tumor biology according to patient age and Gleason score in prostate cancer
Cited by: 31
Author(s): Dorota Jędroszka, Magdalena Orzechowska, R. Hamouz, Karolina Górniak, Andrzej K. Bednarek
Software Mentions: 5
Published: almost 7 years ago
10.1371/journal.ppat.1008968
Analysis of KSHV B lymphocyte lineage tropism in human tonsil reveals efficient infection of CD138+ plasma cells
Cited by: 12
Author(s): Farizeh Aalam, Romina Nabiee, Jesus Ramirez Castano, Jennifer Totonchy
Software Mentions: 4
Published: about 4 years ago
10.3389/fmicb.2019.00479
Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
Cited by: 72
Author(s): Marko Verce, Luc De Vuyst, Stefan Weckx
Software Mentions: 4
Published: over 5 years ago
10.3390/nu9030252
Associations between Maternal Body Composition and Appetite Hormones and Macronutrients in Human Milk
Cited by: 66
Author(s): Sambavi Kugananthan, Zoya Gridneva, Ching Tat Lai, Anna R. Hepworth, Peter J. Mark, Foteini Kakulas, Donna T. Geddes
Software Mentions: 4
Published: over 7 years ago
10.7554/eLife.00522
Cellular resolution models for even skipped regulation in the entire Drosophila embryo
Cited by: 43
Author(s): Garth R Ilsley, Jasmin Fisher, Rolf Apweiler, Angela H. DePace, Nicholas M. Luscombe
Software Mentions: 4
Published: over 11 years ago
10.1093/gbe/evab053
The Genome of the Margined White Butterfly (<i>Pieris macdunnoughii</i>): Sex Chromosome Insights and the Power of Polishing with PoolSeq Data
Cited by: 4
Author(s): Rachel Steward, Yu Okamura, Carol L. Boggs, Heiko Vogel, Christopher W. Wheat
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0154734
Three-Level Mixed-Effects Logistic Regression Analysis Reveals Complex Epidemiology of Swine Rotaviruses in Diagnostic Samples from North America
Cited by: 17
Author(s): Nitipong Homwong, Andrés Díaz, Stephanie Rossow, Max Ciarlet, Douglas Marthaler
Software Mentions: 4
Published: over 8 years ago
10.3389/fmicb.2021.657954
Evaluation of Metagenomic-Enabled Antibiotic Resistance Surveillance at a Conventional Wastewater Treatment Plant
Cited by: 38
Author(s): Haniyyah Majeed, Maria V. Riquelme, Benjamin C. Davis, Suraj Gupta, Luisa Gillian Angeles, Diana S. Aga, Emily Garner, Amy Pruden, Peter J. Vikesland
Software Mentions: 4
Published: over 3 years ago
10.18632/aging.102754
The whole transcriptome regulation as a function of mitochondrial polymorphisms and aging in Caenorhabditis elegans
Cited by: 9
Author(s): Yuanjian Song, Yuechen Wang, Ying Liu, Liang Wang, WenDa Zhang, Jing Cheng, Yushan Zhu, Haoyu Zhang, Qiang Zhang, Haichen Niu, Yingwei Zheng, Mengyu Liang, Mengqiong Deng, Hao Shi, Hao Wang, Fang Zhang
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12870-020-02392-6
Spaceflight induces novel regulatory responses in Arabidopsis seedling as revealed by combined proteomic and transcriptomic analyses
Cited by: 37
Author(s): Colin Kruse, Alexander Meyers, Proma Basu, Sarahann Hutchinson, Darron R. Luesse, Sarah E. Wyatt
Software Mentions: 4
Published: over 4 years ago
10.1038/s41396-020-00841-6
Evolution of Pseudomonas aeruginosa toward higher fitness under standard laboratory conditions
Cited by: 8
Author(s): Igor Grekov, Janne G. Thöming, Adrian Kordes, Susanne Häußler
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.103172
Overexpression of miR-142-5p inhibits the progression of nonalcoholic steatohepatitis by targeting TSLP and inhibiting JAK-STAT signaling pathway
Cited by: 12
Author(s): Chao Zhou, Pu Wang, Lei Lei, Yi Huang, Yue Wu
Software Mentions: 4
Published: over 4 years ago
10.1186/s12864-020-6760-4
Intron and gene size expansion during nervous system evolution
Cited by: 30
Author(s): Matthew J. McCoy, Andrew Fire
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.1799
Specialists in ancient trees are more affected by climate than generalists
Cited by: 26
Author(s): Leonie A. Gough, Anne Sverdrup‐Thygeson, Per Milberg, Hanne Eik Pilskog, Nicklas Jansson, Mats Jonsell, Tone Birkemoe
Software Mentions: 4
Published: about 9 years ago
10.3389/fnut.2020.00126
Seed Composition and Amino Acid Profiles for Quinoa Grown in Washington State
Cited by: 23
Author(s): Evan B. Craine, Kevin M. Murphy
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pgen.1002415
A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures
Cited by: 30
Author(s): Chia Huey Ooi, Hue Kian Oh, H Wang, Angie Lay Keng Tan, Jeanie Wu, Ming‐Hui Lee, Sun Young Rha, Hyun Cheol Chung, David M. Virshup, Patrick Tan
Software Mentions: 4
Published: almost 13 years ago
10.1038/s42003-019-0442-2
TRAV1-2+ CD8+ T-cells including oligoconal expansions of MAIT cells are enriched in the airways in human tuberculosis
Cited by: 54
Author(s): Emily Wong, Marielle C. Gold, Erin W. Meermeier, Bongiwe Z. Xulu, Sharon Khuzwayo, Zuri A. Sullivan, Eisa Mahyari, Zoe Rogers, Henrik N. Kløverpris, Prabhat Kumar Sharma, Aneta Worley, Umesh Lalloo, Prinita Baijnath, Anish Ambaram, Leon Naidoo, Moosa Suleman, Rajhmun Madansein, James E. McLaren, Kristin Ladell, Kelly L. Miners, David A. Price, Samuel M. Behar, Morten Nielsen, Victoria Kasprowicz, Alasdair Leslie, William R. Bishai, Thumbi Ndung’u, David Lewinsohn
Software Mentions: 4
Published: over 5 years ago
10.3390/microorganisms7020035
The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence
Cited by: 17
Author(s): Joseph A. Hakim, Julie B. Schram, Aaron W. E. Galloway, Casey D. Morrow, Michael R. Crowley, Stephen A. Watts, Asim K. Bej
Software Mentions: 4
Published: almost 6 years ago
10.3390/microorganisms8060842
Transcriptome Profiling of Toxoplasma gondii-Infected Human Cerebromicrovascular Endothelial Cell Response to Treatment with Monensin
Cited by: 5
Author(s): Mohammad Syamsul Reza Harun, Mica Taylor, Xing‐Quan Zhu, Hany M. Elsheikha
Software Mentions: 4
Published: over 4 years ago
10.1038/srep18232
Heterogeneity in the spread and control of infectious disease: consequences for the elimination of canine rabies
Cited by: 46
Author(s): Elaine A. Ferguson, Katie Hampson, Sarah Cleaveland, Ramona Consunji, Raffy Deray, John Friar, Daniel T. Haydon, Joji Jimenez, Marlon Pancipane, Sunny E. Townsend
Software Mentions: 4
Published: almost 9 years ago
10.3389/fgene.2020.597459
Pearl Sac Gene Expression Profiles Associated With Pearl Attributes in the Silver-Lip Pearl Oyster, Pinctada maxima
Cited by: 9
Author(s): Carmel McDougall, Felipe Aguilera, Ali Shokoohmand, Patrick Moase, Bernard M. Degnan
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.102275
Co-expression network analysis identified hub genes critical to triglyceride and free fatty acid metabolism as key regulators of age-related vascular dysfunction in mice
Cited by: 52
Author(s): Huimin Li, Xinhui Wang, Xinyue Lu, Hongxin Zhu, Sheng Li, Shiwei Duan, Xinzhi Zhao, Fuquan Zhang, Gil Alterovitz, Fudi Wang, Qiang Li, Xiao-Li Tian, Mingqing Xu
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2019.01035
Population Genomics of the Neotropical Brown Stink Bug, Euschistus heros: The Most Important Emerging Insect Pest to Soybean in Brazil
Cited by: 15
Author(s): Maria Imaculada Zucchi, Erick M. G. Cordeiro, Weijie Xing, Letícia Marise Lamana, Patrick J. Brown, Shilpa Manjunatha, João Paulo Gomes Viana, Celso Omoto, José Baldin Pinheiro, Steven J. Clough
Software Mentions: 4
Published: about 5 years ago
10.1038/sdata.2018.245
Brain metastasis DNA methylomes, a novel resource for the identification of biological and clinical features
Cited by: 18
Author(s): Matthew P. Salomon, Javier I. J. Orozco, James S. Wilmott, Parvinder Hothi, Ayla O. Manughian-Peter, Charles S. Cobbs, Richard A. Scolyer, Dave S.B. Hoon, Diego M. Marzese
Software Mentions: 4
Published: about 6 years ago
10.3390/plants10061240
Cleaning the Medicago Microarray Database to Improve Gene Function Analysis
Cited by: 1
Author(s): Francesca Marzorati, Chu Wang, Giulio Pavesi, Luca Mizzi, Piero Morandini
Software Mentions: 4
Published: over 3 years ago
10.3390/life8040063
Impact of Rearing Conditions on the Ambrosia Beetle’s Microbiome
Cited by: 17
Author(s): Luis A. Ibarra-Juárez, Damaris Desgarennes, Mirna Vázquez-Rosas-Landa, Emanuel Villafán, Alexandro Alonso-Sánchez, Ofelia Ferrera-Rodríguez, Andrés Moya, Daniel Carrillo, Luisa F. Cruz, Gloria Carrión, Abel López-Buenfil, Clemente de Jesús García-Ávila, Enrique Ibarra-Laclette, Araceli Lamelas
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12859-018-2430-9
A comparative study of survival models for breast cancer prognostication revisited: the benefits of multi-gene models
Cited by: 5
Author(s): Michal R. Grzadkowski, Dorota H. Sendorek, Christine P’ng, Vincent Huang, Paul C. Boutros
Software Mentions: 4
Published: about 6 years ago
10.1186/s12958-021-00818-w
Single-cell transcriptome and cell-specific network analysis reveal the reparative effect of neurotrophin-4 in preantral follicles grown in vitro
Cited by: 4
Author(s): Yingchun Guo, Peigen Chen, Tingting Li, Jia Lu, Yi Zhou, Jiana Huang, Xiaoyan Liang, Chuanchuan Zhou, Cong Fang
Software Mentions: 4
Published: about 3 years ago
10.1007/s13280-014-0601-0
Mapping bundles of ecosystem services reveals distinct types of multifunctionality within a Swedish landscape
Cited by: 194
Author(s): Cibele Queiroz, Megan Meacham, Kristina Richter, Albert V. Norström, Erik Andersson, Jon Norberg, Garry D. Peterson
Software Mentions: 4
Published: almost 10 years ago
10.1111/acel.12293
Genetic variants modify the effect of age on<i><scp>APOE</scp></i>methylation in the<scp>G</scp>enetics of<scp>L</scp>ipid<scp>L</scp>owering<scp>D</scp>rugs and<scp>D</scp>iet<scp>N</scp>etwork study
Cited by: 34
Author(s): Yiyi Ma, Caren E. Smith, Chao‐Qiang Lai, Marguerite R. Irvin, Laurence D. Parnell, Yu Chi Lee, Lucia D. Pham, Stella Aslibekyan, Steven A. Claas, Michael Y. Tsai, Ingrid B. Borecki, Edmond K. Kabagambe, Silvia Berciano, José M. Ordovás, Devin Absher, Donna K. Arnett
Software Mentions: 4
Published: almost 10 years ago
10.1038/s41598-021-86207-0
Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease
Cited by: 17
Author(s): Peng-Fei Zheng, Lu-Zhu Chen, Yao-Zong Guan, Peng Liu
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-95455-z
Evaluation of two highly effective lipid-lowering therapies in subjects with acute myocardial infarction
Cited by: 6
Author(s): Aline Klassen, Andréa Tedesco Faccio, Carolina R. C. Picossi, Priscilla Bento Matos Cruz Derogis, Carlos Eduardo dos Santos Ferreira, Aline Soriano Lopes, Alessandra Sussulini, Elisa Castañeda Santa Cruz, Rafaela Tudela Bastos, Stefanie Caroline Fontoura, Antônio Martins Figueiredo Neto, Marina Franco Maggi Tavares, Maria Cristina Izar, Francisco Antônio Helfenstein Fonseca
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2019.00473
Variability in the Composition of Pacific Oyster Microbiomes Across Oyster Families Exhibiting Different Levels of Susceptibility to OsHV-1 μvar Disease
Cited by: 44
Author(s): William L. King, Nachshon Siboni, Nathan L. R. Williams, Tim Kahlke, Khue Viet Nguyen, Cheryl Jenkins, Michael Dove, Wayne A. O’Connor, Justin R. Seymour, Maurizio Labbate
Software Mentions: 4
Published: over 5 years ago
10.7554/eLife.43922
Dynamic repression by BCL6 controls the genome-wide liver response to fasting and steatosis
Cited by: 38
Author(s): Meredith A Sommars, Krithika Ramachandran, Madhavi D. Senagolage, Christopher R. Futtner, Derrik M Germain, Amanda L. Allred, Yasuhiro Omura, Ilya Bederman, Grant D. Barish
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0054961
Host Responses to Melioidosis and Tuberculosis Are Both Dominated by Interferon-Mediated Signaling
Cited by: 57
Author(s): Gavin Koh, M. Fernanda Schreiber, Rubén Bautista, Rapeephan R. Maude, Susanna Dunachie, Direk Limmathurotsakul, Nicholas P. J. Day, Gordon Dougan, Sharon J. Peacock
Software Mentions: 4
Published: almost 12 years ago
10.1186/s12917-018-1505-1
The value of necropsy reports for animal health surveillance
Cited by: 18
Author(s): Susanne Küker, Céline Faverjon, Lenz Furrer, John Berezowski, Horst Posthaus, Fabio Rinaldi, Flavie Vial
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2021.679409
Zetaproteobacteria Pan-Genome Reveals Candidate Gene Cluster for Twisted Stalk Biosynthesis and Export
Cited by: 5
Author(s): Elif Koeksoy, Oliver Bezuidt, Timm Bayer, Clara S. Chan, David Emerson
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-93097-9
Identification of natural product modulators of Merkel cell carcinoma cell growth and survival
Cited by: 2
Author(s): Emily A. Smith, Natasha T. Hill, Tara Gelb, Khalid A. Garman, Ekaterina I. Goncharova, Heidi R. Bokesch, Chang‐Kwon Kim, Karen L. Wendt, Robert H. Cichewicz, Kirk R. Gustafson, Isaac Brownell, Curtis J. Henrich
Software Mentions: 4
Published: over 3 years ago
10.3389/fmicb.2021.703785
Differences in Gut Microbiome Composition Between Sympatric Wild and Allopatric Laboratory Populations of Omnivorous Cockroaches
Cited by: 11
Author(s): Kara Tinker, Elizabeth A. Ottesen
Software Mentions: 4
Published: over 3 years ago
10.1186/s13048-021-00830-z
CACNA1C is a prognostic predictor for patients with ovarian cancer
Cited by: 14
Author(s): Xiaohan Chang, Yuanhua Dong
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-90250-2
Proteomic analysis-based discovery of a novel biomarker that differentiates intestinal Behçet’s disease from Crohn’s disease
Cited by: 4
Author(s): Jihye Park, Da-Eun Jeong, Youn Wook Chung, Seunghan Han, Da Hye Kim, Jongwook Yu, Jae Hee Cheon, Ji Hwan Ryu
Software Mentions: 4
Published: over 3 years ago
10.1098/rsos.160607
Effects of 25 mg oxazepam on emotional mimicry and empathy for pain: a randomized controlled experiment
Cited by: 6
Author(s): Gustav Nilsonne, Sandra Tamm, Armita Golkar, Karolina Sörman, Katarina Howner, Marianne Kristiansson, Andreas Olsson, Martin Ingvar, Predrag Petrović
Software Mentions: 4
Published: over 7 years ago
10.1186/s13046-019-1228-6
Extracellular lipid loading augments hypoxic paracrine signaling and promotes glioma angiogenesis and macrophage infiltration
Cited by: 18
Author(s): Svenja Offer, Julien A. Menard, Julio Enríquez Pérez, Kelin Gonçalves de Oliveira, Vineesh Indira Chandran, Martin Johansson, Anna Bång-Rudenstam, Peter Siesjö, Anna Ebbesson, Ingrid Hedenfalk, Pia C. Sundgren, Anna Darabi, Mattias Belting
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0021620
Seroepidemiology of Bovine Viral Diarrhoea Virus (BVDV) in the Adamawa Region of Cameroon and Use of the SPOT Test to Identify Herds with PI Calves
Cited by: 24
Author(s): Ian Handel, Kim Willoughby, Fiona Land, Bronwyn Koterwas, K. L. Morgan, Vincent N. Tanya, Barend M. deC. Bronsvoort
Software Mentions: 4
Published: over 13 years ago
10.1016/j.cmet.2020.02.016
Sugar-Induced Obesity and Insulin Resistance Are Uncoupled from Shortened Survival in Drosophila
Cited by: 62
Author(s): Esther van Dam, Lucie A.G. van Leeuwen, Eliano Dos Santos, Joanna L. James, Lena Best, Claudia Lennicke, Alec Vincent, Γεώργιος Μαρίνος, A. Reghan Foley, Marcela Buricova, João Benhur Mokochinski, Holger Kramer, Wolfgang Lieb, Matthias Laudes, André Franke, Christoph Kaleta, Helena M. Cochemé
Software Mentions: 4
Published: over 4 years ago
10.3934/publichealth.2015.3.426
Exploring Spatial Variability in the Relationship between Long Term Limiting Illness and Area Level Deprivation at the City Level Using Geographically Weighted Regression
Cited by: 4
Author(s): Karyn Morrissey
Software Mentions: 3
Published: almost 10 years ago
10.3390/antibiotics10050491
New Sequence Type ST3449 in Multidrug-Resistant Pseudomonas aeruginosa Isolates from a Cystic Fibrosis Patient
Cited by: 4
Author(s): Catalina Díaz-Ríos, Marta Hernández, David Abad, Laura Álvarez-Montes, Athanasia Varsaki, David Iturbe-Fernández, Jorge Calvo, Alain A. Ocampo-Sosa
Software Mentions: 3
Published: over 3 years ago
10.1186/1741-7007-10-85
Multiparameter behavioral profiling reveals distinct thermal response regimes in Caenorhabditis elegans
Cited by: 43
Author(s): Rajarshi Ghosh, Aylia Mohammadi, Leonid Kruglyak, William S. Ryu
Software Mentions: 3
Published: about 12 years ago
10.1186/1741-7007-8-146
2R and remodeling of vertebrate signal transduction engine
Cited by: 77
Author(s): Łukasz Huminiecki, Carl Henrik Heldin
Software Mentions: 3
Published: almost 14 years ago
10.1186/s12870-020-02384-6
Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat
Cited by: 13
Author(s): Beáta Strejčková, Radim Čegan, Aleš Pečinka, Zbyněk Milec, Jan Šafář
Software Mentions: 3
Published: about 4 years ago
10.1186/1754-6834-4-4
Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi
Cited by: 195
Author(s): Brian Christopher King, K. D. Waxman, Nicholas V Nenni, Larry P. Walker, Gary C. Bergstrom, Donna M. Gibson
Software Mentions: 3
Published: almost 14 years ago
10.1186/s12935-020-01309-5
Increased expression of YTHDF1 and HNRNPA2B1 as potent biomarkers for melanoma: a systematic analysis
Cited by: 28
Author(s): Tengda Li, Mingli Gu, Anmei Deng, Cheng Qing
Software Mentions: 3
Published: over 4 years ago
10.1007/s00248-020-01623-5
Microbial Community Characterizing Vermiculations from Karst Caves and Its Role in Their Formation
Cited by: 21
Author(s): Rosangela Addesso, Jose Luis Gonzalez-Pimentel, Ilenia Maria D’Angeli, Jo De Waele, Cesáreo Sáiz‐Jiménez, Valme Jurado, Ana Z. Miller, Beatriz Cubero, Giovanni Vigliottá, Daniela Baldantoni
Software Mentions: 3
Published: about 4 years ago
10.1099/mic.0.000097
Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes
Cited by: 24
Author(s): Bernard J. Wolff, Shatavia S. Morrison, Denise Pesti, Satishkumar Ranganathan Ganakammal, Ganesh Srinivasamoorthy, Shankar Changayil, M. Ryan Weil, Duncan MacCannell, Lori A. Rowe, Michael Frace, Branson W. Ritchie, Deborah Dean, Jonas M. Winchell
Software Mentions: 3
Published: over 9 years ago
10.3390/v12111241
HCV Genetic Diversity Can Be Used to Infer Infection Recency and Time since Infection
Cited by: 3
Author(s): Louisa Carlisle, Teja Turk, Karin J. Metzner, Herbert A Mbunkah, Cyril Shah, Jürg Böni, Michael Huber, Dominique L Braun, Jan Fehr, Luisa Salazar‐Vizcaya, Andri Rauch, Sabine Yerly, Aude Nguyen, Matthias Cavassini, Marcel Stoeckle, Pietro Vernazza, Enos Bernasconi, Huldrych F. Günthard, Roger D. Kouyos
Software Mentions: 3
Published: about 4 years ago
10.7717/peerj.2837
Exploring the cockatiel (<i>Nymphicus hollandicus</i>) fecal microbiome, bacterial inhabitants of a worldwide pet
Cited by: 19
Author(s): Luis David Alcaraz, Apolinar M. Hernández, Mariana Peimbert
Software Mentions: 3
Published: almost 8 years ago
10.7717/peerj.7791
Stress-induced changes in the expression of antioxidant system genes for rice (<i>Oryza sativa</i> L.) and bread wheat (<i>Triticum aestivum</i> L.)
Cited by: 4
Author(s): Anton A. Ermakov, Aleksandr Bobrovskikh, У. С. Зубаирова, Dmitrii K. Konstantinov, А. В. Дорошков
Software Mentions: 3
Published: almost 5 years ago
10.7717/peerj.1602
Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene
Cited by: 195
Author(s): Hans Verstraelen, Ramiro Vílchez-Vargas, Fabian Desimpel, Ruy Jáuregui, Nele Vankeirsbilck, Steven Weyers, Rita Verhelst, Petra De Sutter, Dietmar H. Pieper, Tom Van de Wiele
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pbio.3000599
A proteomic atlas of senescence-associated secretomes for aging biomarker development
Cited by: 602
Author(s): Nathan Basisty, Abhijit Kale, Ok Hee Jeon, Chisaka Kuehnemann, Therese Payne, Chirag Rao, Anja Holtz, Samah Shah, Vagisha Sharma, Luigi Ferrucci, Judith Campisi, Birgit Schilling
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0171078
Metabolite profiling of the carnivorous pitcher plants Darlingtonia and Sarracenia
Cited by: 16
Author(s): Hannu Hotti, Peddinti Gopalacharyulu, Tuulikki Seppänen‐Laakso, Heiko Rischer
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0109710
Microbial Communities in the Upper Respiratory Tract of Patients with Asthma and Chronic Obstructive Pulmonary Disease
Cited by: 74
Author(s): HeeKuk Park, Jong Wook Shin, Sang-Gue Park, Wonyong Kim
Software Mentions: 3
Published: about 10 years ago
10.1371/journal.pone.0075057
Origins of Myc Proteins – Using Intrinsic Protein Disorder to Trace Distant Relatives
Cited by: 21
Author(s): Amir Mahani, Johan Henriksson, Anthony P. H. Wright
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0179404
Insects and associated arthropods analyzed during medicolegal death investigations in Harris County, Texas, USA: January 2013- April 2016
Cited by: 36
Author(s): Michelle R. Sanford
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0082319
Testing the Reproducibility of Multiple Displacement Amplification on Genomes of Clonal Endosymbiont Populations
Cited by: 21
Author(s): Kirsten Ellegaard, Lisa Klasson, Siv G. E. Andersson
Software Mentions: 3
Published: almost 11 years ago
10.1371/journal.pone.0130198
Chronic Insulin Exposure Induces ER Stress and Lipid Body Accumulation in Mast Cells at the Expense of Their Secretory Degranulation Response
Cited by: 10
Author(s): William E. Greineisen, Kristina Maaetoft-Udsen, Mark Speck, Januaria M. Balajadia, Lori M. N. Shimoda, Carl Sung, Helen Turner
Software Mentions: 3
Published: over 9 years ago
10.3390/cancers12092671
Zoledronic Acid Abrogates Restraint Stress-Induced Macrophage Infiltration, PDGF-AA Expression, and Ovarian Cancer Growth
Cited by: 13
Author(s): Claudia B. Colon-Echevarria, Tatiana Ortiz, Lizette Maldonado, Melanie J. Hidalgo-Vargas, Jaileene Pérez‐Morales, Alexandra N. Aquino-Acevedo, Roberto Herrera-Noriega, Margarita Bonilla-Claudio, Eida Castro, Guillermo N. Armaiz-Pena
Software Mentions: 3
Published: about 4 years ago
10.3390/cancers13020298
Soluble and Exosome-Bound α-Galactosylceramide Mediate Preferential Proliferation of Educated NK Cells with Increased Anti-Tumor Capacity
Cited by: 3
Author(s): Arnika K. Wagner, Ulf Gehrmann, Stefanie Hiltbrunner, Valentina Carannante, Thuy T. Luu, Tanja I. Näslund, Hanna Brauner, Nadir Kadri, Klas Kärre, Susanne Gabrielsson
Software Mentions: 3
Published: almost 4 years ago
10.1016/j.celrep.2019.03.044
Transcriptomics-Based Screening Identifies Pharmacological Inhibition of Hsp90 as a Means to Defer Aging
Cited by: 56
Author(s): Georges E. Janssens, Xin-Xuan Lin, Lluís Millán-Ariño, Alan Kavšek, Ilke Sen, Renée I. Seinstra, Nicholas Stroustrup, Ellen A. A. Nollen, Christian G. Riedel
Software Mentions: 3
Published: over 5 years ago
10.3390/cells10020404
Impact of DJ-1 and Helix 8 on the Proteome and Degradome of Neuron-Like Cells
Cited by: 3
Author(s): Ursula Kern, Klemens Fröhlich, Johanna Bedacht, Nico M. Schmidt, Martin L. Biniossek, Nicole Gensch, Katja Baerenfaller, Oliver Schilling
Software Mentions: 3
Published: almost 4 years ago
10.1186/s13020-021-00436-z
Bioconversion variation of ginsenoside CK mediated by human gut microbiota from healthy volunteers and colorectal cancer patients
Cited by: 6
Author(s): Yinping Guo, Li Shao, Li Wang, Man‐Yun Chen, Wei Zhang, Weihua Huang
Software Mentions: 3
Published: over 3 years ago
10.15252/embj.201592383
Cytokine‐induced megakaryocytic differentiation is regulated by genome‐wide loss of a <scp>uSTAT</scp> transcriptional program
Cited by: 67
Author(s): Hyun Jung Park, Juan Li, Rebecca Hannah, Simon C. Biddie, Ana Leal-Cervantes, Kristina Kirschner, David Flores Santa Cruz, Veronika Sexl, Berthold Göttgens, Anthony Green
Software Mentions: 3
Published: almost 9 years ago
10.15252/emmm.202013598
Myeloid cell‐based delivery of IFN‐γ reprograms the leukemia microenvironment and induces anti‐tumoral immune responses
Cited by: 10
Author(s): Adele Mucci, Gabriele Antonarelli, Carolina Caserta, Francesco Maria Vittoria, Giacomo Desantis, Riccardo Pagani, Béatrice Gréco, Monica Casucci, Giulia Escobar, Laura Passerini, Nico Lachmann, Francesca Sanvito, Matteo Barcella, Ivan Merelli, Luigi Naldini, Bernhard Gentner
Software Mentions: 3
Published: about 3 years ago
10.15252/emmm.201708274
Identification of potential therapeutic targets in prostate cancer through a cross‐species approach
Cited by: 30
Author(s): Sarah Jurmeister, Antonio Ramos-Montoya, Carmen Sandi, Nelma Pértega‐Gomes, Karan Wadhwa, Alastair Lamb, Mark J. Dunning, Jan Attig, Jason S. Carroll, Lee G.D. Fryer, Sérgio Luís Felisbino, David E. Neal
Software Mentions: 3
Published: almost 7 years ago
10.1111/1462-2920.15546
A novel methoxydotrophic metabolism discovered in the hyperthermophilic archaeon <i>Archaeoglobus fulgidus</i>
Cited by: 9
Author(s): Cornelia U. Welte, R.M. de Graaf, Paula Dalcin Martins, Robert S. Jansen, Mike S. M. Jetten, Julia M. Kurth
Software Mentions: 3
Published: over 3 years ago
10.3390/foods10071592
Impact of Global Climate Change on the European Barley Market Requires Novel Multi-Method Approaches to Preserve Crop Quality and Authenticity
Cited by: 4
Author(s): Stefan G. Bindereif, Felix Rüll, Peter Kolb, Lucas Köberle, Holger Willms, Simon Steidele, Stephan Schwarzinger, Gerhard Gebauer
Software Mentions: 3
Published: over 3 years ago
10.3389/fcvm.2021.614997
Early Detection of Checkpoint Inhibitor-Associated Myocarditis Using 68Ga-FAPI PET/CT
Cited by: 49
Author(s): Daniel Finke, Markus Heckmann, Esther Herpel, Hugo A. Katus, Uwe Haberkorn, Florian Leuschner, Lorenz Lehmann
Software Mentions: 3
Published: over 3 years ago
10.3389/fncel.2018.00352
IFN-γ Producing Th1 Cells Induce Different Transcriptional Profiles in Microglia and Astrocytes
Cited by: 22
Author(s): Chittappen Kandiyil Prajeeth, Oliver Dittrich‐Breiholz, Steven R. Talbot, Philippe A. Robert, Jochen Huehn, Martin Stangel
Software Mentions: 3
Published: about 6 years ago
10.3389/fimmu.2016.00361
Tissue-Specific Expression Patterns of MicroRNA during Acute Graft-versus-Host Disease in the Rat
Cited by: 20
Author(s): Dasaradha Jalapothu, Margherita Boieri, Rachel E Crossland, Pranali Shah, Isha A. Butt, Jean Norden, Ralf Dressel, AM Dickinson, Marit Inngjerdingen
Software Mentions: 3
Published: about 8 years ago
10.3389/fmicb.2020.01950
Discovery of an Abundance of Biosynthetic Gene Clusters in Shark Bay Microbial Mats
Cited by: 36
Author(s): Ray Chen, Hon Lun Wong, Gareth Kindler, Fraser Iain MacLeod, Nicole Benaud, Belinda C. Ferrari, Brendan P. Burns
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2020.578600
A Curricular Bioinformatics Approach to Teaching Undergraduates to Analyze Metagenomic Datasets Using R
Cited by: 5
Author(s): Anne Kruchten
Software Mentions: 3
Published: about 4 years ago
10.3389/fmicb.2021.620033
Population Genomic Analysis of Listeria monocytogenes From Food Reveals Substrate-Specific Genome Variation
Cited by: 6
Author(s): Tyler Bechtel, John G. Gibbons
Software Mentions: 3
Published: almost 4 years ago
10.3389/fnins.2021.595583
Spatial Memory and Gut Microbiota Alterations Are Already Present in Early Adulthood in a Pre-clinical Transgenic Model of Alzheimer’s Disease
Cited by: 25
Author(s): Paola C. Bello-Medina, Fernando Hernández-Quiroz, Marcel Pérez-Morales, Diego A. González-Franco, Guadalupe Cruz-Pauseno, Jaime García‐Mena, Sofía Díaz‐Cintra, Gustavo Pacheco-López
Software Mentions: 3
Published: over 3 years ago
10.3389/fnut.2020.553674
Circulating Branched Chain Amino Acid Concentrations Are Higher in Dairy-Avoiding Females Following an Equal Volume of Sheep Milk Relative to Cow Milk: A Randomized Controlled Trial
Cited by: 9
Author(s): Amber M. Milan, Linda M. Samuelsson, Aahana Shrestha, Pankaja Sharma, Linda Day, David Cameron‐Smith
Software Mentions: 3
Published: about 4 years ago
10.3389/fonc.2021.718589
Aggresome–Autophagy Associated Gene HDAC6 Is a Potential Biomarker in Pan-Cancer, Especially in Colon Adenocarcinoma
Cited by: 9
Author(s): Zhiyong Zhang, Xin Zhang, Aimin Huang
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2015.01238
The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots
Cited by: 45
Author(s): Nanette Christie, Peri A Tobias, Sanushka Naidoo, Carsten Külheim
Software Mentions: 3
Published: almost 9 years ago
10.3389/fpls.2021.621168
Biotic Yield Losses in the Southern Amazon, Brazil: Making Use of Smartphone-Assisted Plant Disease Diagnosis Data
Cited by: 9
Author(s): Anna Hampf, Claas Nendel, Simone Strey, Robert Strey
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2021.719873
Can Inoculation With the Bacterial Biostimulant Enterobacter sp. Strain 15S Be an Approach for the Smarter P Fertilization of Maize and Cucumber Plants?
Cited by: 10
Author(s): Mónica Yorlady Alzate Zuluaga, André Luiz Martinez de Oliveira, Fabio Valentinuzzi, Raphael Tiziani, Youry Pii, Tanja Mimmo, Stefano Cesco
Software Mentions: 3
Published: about 3 years ago
10.3389/fpsyg.2017.00795
Improving Assessment of the Spectrum of Reward-Related Eating: The RED-13
Cited by: 31
Author(s): Ashley E. Mason, Uku Vainik, Michael Acree, A. Janet Tomiyama, Alain Dagher, Elissa S. Epel, Frederick M. Hecht
Software Mentions: 3
Published: over 7 years ago
10.1172/jci.insight.145607
A surgical method for continuous intraportal infusion of gut microbial metabolites in mice
Cited by: 5
Author(s): Danny Orabi, Lucas J Osborn, Kevin Fung, William Massey, Anthony Horak, Federico Aucejo, Ibrahim Choucair, Beckey DeLucia, Zeneng Wang, Jan Claesen, J. Mark Brown
Software Mentions: 3
Published: over 3 years ago
10.1200/CCI.17.00079
Overcoming the Straw Man Effect in Oncology: Visualization and Ranking of Chemotherapy Regimens Using an Information Theoretic Approach
Cited by: 1
Author(s): Jeremy L. Warner, Peter Yang, Gil Alterovitz
Software Mentions: 3
Published: about 7 years ago
10.1186/s13321-016-0154-2
Discriminating agonist and antagonist ligands of the nuclear receptors using 3D-pharmacophores
Cited by: 7
Author(s): Nathalie Lagarde, Solenne Delahaye, Jean‐François Zagury, Matthieu Montès
Software Mentions: 3
Published: about 8 years ago
10.1186/s13321-021-00524-0
Ensemble completeness in conformer sampling: the case of small macrocycles
Cited by: 4
Author(s): Lea Seep, Anne Bonin, Katharina Meier, Holger Diedam, Andreas H. Göller
Software Mentions: 3
Published: over 3 years ago
10.1007/s00359-018-1252-6
Candidate genes for cooperation and aggression in the social wasp Polistes dominula
Cited by: 17
Author(s): Fabio Manfredini, Mark J. F. Brown, Amy L. Toth
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.ppat.1004740
Characterization of CD8+ T Cell Differentiation following SIVΔnef Vaccination by Transcription Factor Expression Profiling
Cited by: 14
Author(s): James M. Billingsley, Premeela A. Rajakumar, Michelle Connole, Nadine C. Salisch, Sama Adnan, Yury V. Kuzmichev, Henoch S. Hong, R. Keith Reeves, Hyung-Joo Kang, Wenjun Li, Qingsheng Li, Ashley T. Haase, R. Paul Johnson
Software Mentions: 3
Published: over 9 years ago
10.1016/j.rvsc.2012.11.001
Bluetongue and Epizootic Haemorrhagic Disease virus in local breeds of cattle in Kenya
Cited by: 26
Author(s): Philip G. Toye, Carrie Batten, Henry K. Kiara, Mark Henstock, L. Edwards, Samuel M. Thumbi, Elizabeth J. Poole, Ian Handel, Barend M. deC. Bronsvoort, Olivier Hanotte, Jacobus A.W. Coetzer, Mark Woolhouse, C.A.L. Oura
Software Mentions: 3
Published: over 11 years ago