Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: R0

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/R0

Estimation of R0 and Real-Time Reproduction Number from Epidemics
12 versions
Latest release: 12 months ago
572 downloads last month

Papers Mentioning R0 22

OutbreakTools: A new platform for disease outbreak analysis using the R software
Cited by: 37
Author(s): Thibaut Jombart, David M. Aanensen, Marc Baguelin, Paul Birrell, Simon Cauchemez, Anton Camacho, Caroline Colijn, Caitlin Collins, Anne Cori, Xavier Didelot, Christophe Fraser, Simon D. W. Frost, Niel Hens, Joseph Hugues, Michael Höhle, Lulla Opatowski, Andrew Rambaut, Oliver Ratmann, Samuel Soubeyrand, Marc A. Suchard, Jacco Wallinga, Rolf J. F. Ypma, Neil M. Ferguson
Software Mentions: 11
Published: over 10 years ago

10.1186/s13071-018-3280-z

Probability of dengue transmission and propagation in a non-endemic temperate area: conceptual model and decision risk levels for early alert, prevention and control
Cited by: 13
Author(s): Cecilia Marques-Toledo, Maria Mercedes de Almeida Bendati, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 8
Published: over 5 years ago

10.1186/1471-2334-14-539

The distribution of incubation and relapse times in experimental human infections with the malaria parasite Plasmodium vivax
Cited by: 12
Author(s): Andrew A. Lover, Xiahong Zhao, Gengfeng Zheng, Richard Coker, Alex R. Cook
Software Mentions: 7
Published: almost 10 years ago

10.1371/journal.pone.0239026

Impact of COVID-19 epidemic curtailment strategies in selected Indian states: An analysis by reproduction number and doubling time with incidence modelling
Cited by: 14
Author(s): Arun Mitra, Abhijit Pakhare, Adrija Roy, Ankur Joshi
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0249143

Modeling transmission dynamics and effectiveness of worker screening programs for SARS-CoV-2 in pork processing plants
Cited by: 7
Author(s): Kimberly VanderWaal, Lora Black, Judy Hodge, Addisalem Bedada, Scott Dee
Software Mentions: 4
Published: about 3 years ago

10.1002/bimj.202000112

Nowcasting the COVID‐19 pandemic in Bavaria
Cited by: 54
Author(s): Felix Günther, Andreas Bender, Katharina Katz, Helmut Küchenhoff, Michael Höhle
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-79546-x

The effects of flooding and weather conditions on leptospirosis transmission in Thailand
Cited by: 28
Author(s): Sudarat Chadsuthi, Karine Chalvet‐Monfray, Anuwat Wiratsudakul, Charin Modchang
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-91798-9

Cold and dry winter conditions are associated with greater SARS-CoV-2 transmission at regional level in western countries during the first epidemic wave
Cited by: 19
Author(s): Jordi Landier, Juliette Paireau, Stanislas Rebaudet, Eva Legendre, Laurent Lehot, Arnaud Fontanet, Simon Cauchemez, Jean Gaudart
Software Mentions: 3
Published: over 3 years ago

10.1186/1472-6947-12-147

The R0 package: a toolbox to estimate reproduction numbers for epidemic outbreaks
Cited by: 270
Author(s): Thomas Obadia, Romana Haneef, Pierre‐Yves Boëlle
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12879-021-06522-9

Transmission dynamics of SARS-CoV-2 in a mid-size city of China
Cited by: 5
Author(s): Hongjun Zhao, Xiaoxiao Lu, Wenhui Lun, Tiegang Li, Boqi Rao, Dedong Wang, Di Wu, Fuman Qiu, Zhicong Yang, Jiachun Lü
Software Mentions: 2
Published: about 3 years ago

10.1186/s12889-021-10950-2

Differential impact of non-pharmaceutical public health interventions on COVID-19 epidemics in the United States
Cited by: 18
Author(s): Xiaoshuang Liu, Xing Xu, Guanqiao Li, Xian Xu, Ying Sun, Fei Wang, Xuanling Shi, Xiang Li, Guotong Xie, Linqi Zhang
Software Mentions: 2
Published: over 3 years ago

10.1111/irv.12467

Estimating and modelling the transmissibility of Middle East Respiratory Syndrome CoronaVirus during the 2015 outbreak in the Republic of Korea
Cited by: 23
Author(s): Xu‐Sheng Zhang, Richard Pebody, André Charlett, Daniela De Angelis, Paul Birrell, Hunseok Kang, Marc Baguelin, Yoon Hong Choi
Software Mentions: 2
Published: about 7 years ago

10.4178/epih.e2020047

Time variant reproductive number of COVID-19 in Seoul, Korea
Cited by: 3
Author(s): Seong Geun Moon, Yeon Kyung Kim, Woo Sik Son, Jong Hoon Kim, Jungsoon Choi, Baeg Ju Na, Boyoung Park, Bo Youl Choi
Software Mentions: 2
Published: about 4 years ago

10.1007/s12546-021-09263-3

Demographic and territorial characteristics of COVID-19 cases and excess mortality in the European Union during the first wave
Cited by: 9
Author(s): Anne Goujon, Franca Natale, Daniela Ghio, Conte Alessandra
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.1418

Rapid drop in the reproduction number during the Ebola outbreak in the Democratic Republic of Congo
Cited by: 13
Author(s): Christian L. Althaus
Software Mentions: 1
Published: almost 9 years ago

10.1017/dmp.2020.314

Effectiveness of Containment Measures to Control the Spread of COVID-19 in North Africa
Cited by: 9
Author(s): Ouail Ouchetto, Asmaa Drissi Bourhanbour, Mounir Boumhamdi
Software Mentions: 1
Published: about 4 years ago

10.1017/S0950268821000431

Re-estimation of basic reproduction number of COVID-19 based on the epidemic curve by symptom onset date
Cited by: 4
Author(s): Kwan Hong, Sujin Yum, Jeehyun Kim, Byung Chul Chun
Software Mentions: 1
Published: over 3 years ago

10.3389/fvets.2021.597630

Estimation of the Basic Reproduction Numbers of the Subtypes H5N1, H5N8, and H5N6 During the Highly Pathogenic Avian Influenza Epidemic Spread Between Farms
Cited by: 5
Author(s): Woo-Hyun Kim, Seongbeom Cho
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-019-43586-9

Comparative Analysis of Eleven Healthcare-Associated Outbreaks of Middle East Respiratory Syndrome Coronavirus (Mers-Cov) from 2015 to 2017
Cited by: 33
Author(s): Sibylle Bernard-Stoecklin, Birgit Nikolay, Abdullah M. Assiri, Abdul Aziz Bin Saeed, Peter Karim Ben Embarek, H. E. El Bushra, Moran Ki, Mamunur Rahman Malik, Arnaud Fontanet, Simon Cauchemez, Maria D. Van Kerkhove
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00381-20

Quantifying the Transmission of Foot-and-Mouth Disease Virus in Cattle via a Contaminated Environment
Cited by: 17
Author(s): Claire Colenutt, Emma Brown, Noel Nelson, David Paton, P.L. Eblé, A. Dekker, José L. Gonzáles, Simon Gubbins
Software Mentions: 1
Published: about 4 years ago

10.3390/jpm11090889

COVID-19 Pandemic Outbreak in the Subcontinent: A Data Driven Analysis
Cited by: 6
Author(s): Bikash Chandra Singh, Zulfikar Alom, Haibo Hu, Mohammad Muntasir Rahman, Mrinal Kanti Baowaly, Zeyar Aung, Mohammad Abdul Azim, Mohammad Ali Moni
Software Mentions: 1
Published: about 3 years ago