Ecosyste.ms: Papers

10.1186/s40425-019-0764-0

34th Annual Meeting & Pre-Conference Programs of the Society for Immunotherapy of Cancer (SITC 2019): part 2
Cited by: 28
Author(s):
Software Mentions: 12
Published: almost 5 years ago

10.1371/journal.pgen.1009054

Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases
Cited by: 13
Author(s): Elena Díaz-Santiago, Fernando M. Jabato, Elena Rojano, Pedro Seoane, Florencio Pazos, James R. Perkins, Juan A. G. Ranea
Software Mentions: 4
Published: almost 4 years ago

10.1155/2016/1910852

HLA-<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:msup><mml:mrow><mml:mtext mathvariant="bold">E</mml:mtext></mml:mrow><mml:mrow><mml:mo>⁎</mml:mo></mml:mrow></mml:msup></mml:mrow></mml:math>01:03 Allele in Lung Transplant Recipients Correlates with Higher Chronic Lung Allograft Dysfunction Occurrence
Cited by: 8
Author(s): Julie Di Cristofaro, Mathieu Pelardy, Anderson Loundou, Agnès Basire, Carine Gomez, Jacques Chiaroni, Philippe Thomas, Martine Reynaud‐Gaubert, Christophe Picard
Software Mentions: 3
Published: over 8 years ago

10.1093/gigascience/giab059

Desiderata for the development of next-generation electronic health record phenotype libraries
Cited by: 14
Author(s): Martin Chapman, Shahzad Mumtaz, Luke V. Rasmussen, Andreas Karwath, Georgios V. Gkoutos, Chuang Gao, Daniel Thayer, Jennifer A. Pacheco, Helen Parkinson, Rachel L. Richesson, Emily Jefferson, Spiros Denaxas, Vasa Ćurčin
Software Mentions: 3
Published: about 3 years ago

10.1186/s12967-020-02672-7

Validation of a method evaluating T cell metabolic potential in compliance with ICH Q2 (R1)
Cited by: 5
Author(s): Patricia Mercier‐Letondal, Chrystel Marton, Yann Godet, Jeanne Galaine
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0036962

The Cumulative Effects of Polymorphisms in the DNA Mismatch Repair Genes and Tobacco Smoking in Oesophageal Cancer Risk
Cited by: 44
Author(s): Matjaž Vogelsang, Yabing Wang, Nika Veber, Lamech M. Mwapagha, M. Iqbal Parker
Software Mentions: 2
Published: over 12 years ago

10.3389/fninf.2021.597708

The Stroke Neuro-Imaging Phenotype Repository: An Open Data Science Platform for Stroke Research
Cited by: 8
Author(s): Hossein Mohammadian Foroushani, Rajat Dhar, Yasheng Chen, Jenny Gurney, Ali Hamzehloo, Lee J, Daniel S. Marcus
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-018-35844-z

The NnaR orphan response regulator is essential for the utilization of nitrate and nitrite as sole nitrogen sources in mycobacteria
Cited by: 6
Author(s): Magdalena Antczak, Renata Płocińska, Przemysław Płociński, Anna Rumijowska-Galewicz, Anna Żaczek, Dominik Strapagiel, Jarosław Dziadek
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2105-10-S12-S5

Phenotypic and genotypic data integration and exploration through a web-service architecture
Cited by: 9
Author(s): Angelo Nuzzo, Alberto Riva, Riccardo Bellazzi
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0053037

Functional Relevance for Associations between Genetic Variants and Systemic Lupus Erythematosus
Cited by: 12
Author(s): Fei‐Yan Deng, Shu‐Feng Lei, Yonghong Zhang, Zengli Zhang, Yufan Guo
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0163570

Association of HLA-A and Non-Classical HLA Class I Alleles
Cited by: 27
Author(s): Federico Carlini, Virginia Ferreira, Stéphane Bühler, Audrey Tous, Jean‐François Eliaou, Céline René, Jacques Chiaroni, Christophe Picard, Julie Di Cristofaro
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0228878

Analysis of a large single institution cohort of related donors fails to detect a relation between SDF1/CXCR4 or VCAM/VLA4 genetic polymorphisms and the level of hematopoietic progenitor cell mobilization in response to G-CSF
Cited by: 2
Author(s): Sylvain Garciaz, Patrick Sfumato, Angela Granata, Anne‐Marie Imbert, Claire Fournel, Boris Calmels, Claude Lemarié, Jacques Chiaroni, Didier Blaise, Jean‐Marie Boher, Christophe Picard, Christian Chabannon, Julie Di Cristofaro
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0223984

Scientist and data architect collaborate to curate and archive an inner ear electrophysiology data collection
Cited by: 4
Author(s): Brenda Farrell, Jason Bengtson
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12866-015-0563-9

Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients
Cited by: 58
Author(s): Rasmus Lykke Marvig, Daniela Dolce, Lea Mette Madsen Sommer, Bent Petersen, Oana Ciofu, S. Campana, Søren Molin, Giovanni Taccetti, Helle Krogh Johansen
Software Mentions: 1
Published: almost 9 years ago

10.1161/CIRCRESAHA.116.308765

Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci
Cited by: 150
Author(s): Gregory T. Jones, Gerard Tromp, Helena Kuivaniemi, Sólveig Grétarsdóttir, Annette F. Baas, Betti Giusti, Ewa Strauss, Femke N. G. van't Hof, Tom R. Webb, Robert Erdman, Marylyn D. Ritchie, James R. Elmore, Anurag Verma, Sarah A. Pendergrass, Iftikhar J. Kullo, Zi Ye, Peggy L. Peissig, Omri Gottesman, Shefali S. Verma, Jennifer Malinowski, Laura J. Rasmussen‐Torvik, Kenneth M. Borthwick, Diane T. Smelser, David R. Crosslin, Mariza de Andrade, Evan J. Ryer, Catherine A. McCarty, Erwin P. Böttinger, Jennifer A. Pacheco, Dana C. Crawford, David Carrell, Glenn S. Gerhard, David P. Franklin, David J. Carey, Victoria Phillips, Michael J.A. Williams, Wenhua Wei, Ross D. Blair, Andrew Hill, Thodor M. Vasudevan, David R. Lewis, Ian Thomson, Jo Krysa, Gerry B. Hill, Justin Roake, Tony R. Merriman, Grzegorz Oszkinis, Silvia Galora, Claudia Saracini, Rosanna Abbate, Raffaele Pulli, Carlo Pratesi, Athanasios Saratzis, Ana Raquel Verissimo, Suzannah Bumpstead, Stephen A. Badger, Rachel E. Clough, Gillian Cockerill, Hany Hafez, D. Scott, T. Simon Futers, Simon P. R. Romaine, Katherine Bridge, Kathryn J. Griffin, Marc A. Bailey, Alberto Smith, Matthew M. Thompson, Frank M. van Bockxmeer, Stefán E. Matthíasson, Guðmar Þorleifsson, Unnur Þorsteinsdóttir, Jan D. Blankensteijn, Joep A.W. Teijink, Cisca Wijmenga, Jacqueline de Graaf, Lambertus A. Kiemeney, Jes Sanddal Lindholt, Anne E. Hughes, Declan Bradley, Kathleen Stirrups, Jonathan Golledge, Paul Norman, Janet T. Powell, Steve E. Humphries, Stephen E. Hamby, Alison H. Goodall, Christopher P. Nelson, Natzi Sakalihasan, Audrey Courtois, Robert E. Ferrell, Per Eriksson, Lasse Folkersen, Anders Franco‐Cereceda, John D. Eicher, Andrew D. Johnson, Christer Betsholtz, Arno Ruusalepp, Oscar Franzén, Eric E. Schadt, Johan Björkegren, Leonard Lipovich, Anne M. Drolet, Eric L.G. Verhoeven, Clark J. Zeebregts, Robert H. Geelkerken, M.R. van Sambeek, S.M. van Sterkenburg, Jean-Paul de Vries, Kári Stefánsson, John R. Thompson, Paul I. W. de Bakker, Panos Deloukas, Robert D. Sayers, Seamus C. Harrison, André M. van Rij, Nilesh J. Samani, Matthew J. Bown
Software Mentions: 1
Published: over 7 years ago

10.1093/database/baab054

The Breeding Information Management System (BIMS): an online resource for crop breeding
Cited by: 11
Author(s): Sook Jung, Taein Lee, Ksenija Gašić, B. Todd Campbell, Jing Yu, Jodi L. Humann, Sushan Ru, Daniel Edge-Garza, Heidi Hough, Dorrie Main
Software Mentions: 1
Published: over 3 years ago

10.3389/fcvm.2021.630471

A Bioinformatics Perspective on the Links Between Tetraspanin-Enriched Microdomains and Cardiovascular Pathophysiology
Cited by: 1
Author(s): Ge Sun, Junxiong Chen, Yongjie Ding, Jonathan D. Wren, Fuyi Xu, Lu Lu, Yan Wang, Daowen Wang, Xin A. Zhang
Software Mentions: 1
Published: over 3 years ago

10.1111/1751-7915.12408

<i>Zymomonas mobilis</i> as a model system for production of biofuels and biochemicals
Cited by: 141
Author(s): Shihui Yang, Qiang Fei, Yaoping Zhang, Lydia M. Contreras, Sagar M. Utturkar, Steven D. Brown, Michael E. Himmel, Min Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fphar.2020.561537

An Arthropod Hormone, Ecdysterone, Inhibits the Growth of Breast Cancer Cells via Different Mechanisms
Cited by: 11
Author(s): Oleg Shuvalov, Olga Fedorova, Elizaveta Tananykina, Y. Gnennaya, Alexandra Daks, Alexey Petukhov, Н.А. Барлев
Software Mentions: 1
Published: almost 4 years ago

10.1155/2015/684321

Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement
Cited by: 11
Author(s): Arun Prabhu Dhanapal, Mahalingam Govindaraj
Software Mentions: 1
Published: over 9 years ago

10.1038/s41380-019-0399-z

Uncovering the complex genetics of human personality: response from authors on the PGMRA Model
Cited by: 15
Author(s): Igor Zwir, Pashupati P. Mishra, Coral del Val, C. Charles Gu, Gabriel A. de Erausquin, Terho Lehtimäki, Cloninger Cr
Software Mentions: 1
Published: over 5 years ago

10.1186/2041-1480-5-21

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
Cited by: 117
Author(s): Melissa Haendel, James P. Balhoff, Frederic Bastian, David C. Blackburn, Judith A. Blake, Yvonne M. Bradford, Aurélie Comte, Wasila Dahdul, T. Alexander Dececchi, Robert E. Druzinsky, Terry F. Hayamizu, Nizar Ibrahim, Suzanna Lewis, Paula M. Mabee, Anne Niknejad, Marc Robinson‐Rechavi, Paul C. Sereno, Christopher J. Mungall
Software Mentions: 1
Published: over 10 years ago

10.1186/s13326-015-0004-6

Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows
Cited by: 15
Author(s): Xiao Fu, Riza Theresa Batista-Navarro, Rafał Rak, Sophia Ananiadou
Software Mentions: 1
Published: over 9 years ago

10.1186/1746-4811-8-45

PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery
Cited by: 60
Author(s): Jason M. Green, Heidi M. Appel, Erin MacNeal Rehrig, Jaturon Harnsomburana, Jia-Fu Chang, Peter Balint‐Kurti, Chi‐Ren Shyu
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0222078

Decrypting the environmental sources of Mycobacterium canettii by high-throughput biochemical profiling
Cited by: 2
Author(s): Ahmed Loukil, Fériel Bouzid, Djaltou Aboubaker Osman
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0082517

HLA-G UTR Haplotype Conservation in the Malian Population: Association with Soluble HLA-G
Cited by: 37
Author(s): Federico Carlini, Karim Traore, Nissem Cherouat, Pierre L. Roubertoux, Stéphane Bühler, Martı́ Cortey, Sophie Simon, Ogobara K. Doumbo, Jacques Chiaroni, Christophe Picard, Julie Di Cristofaro
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0162287

Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource
Cited by: 11
Author(s): Noha Alnazzawi, Paul Thompson, Sophia Ananiadou
Software Mentions: 1
Published: almost 8 years ago