cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1107/S2053230X18012992

Crystal structures and kinetics ofN-acetylneuraminate lyase fromFusobacterium nucleatum
Cited by: 5
Author(s): J. Kumar, Harshvardhan Rao, Vinod Nayak, S. Ramaswamy
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0044124

Complex Structure of Engineered Modular Domains Defining Molecular Interaction between ICAM-1 and Integrin LFA-1
Cited by: 3
Author(s): Sungkwon Kang, Chae Un Kim, Xiaoling Gu, Róisı́n M. Owens, Sarah J. van Rijn, Vanissra Boonyaleepun, Yuxin Mao, Timothy A. Springer, Moonsoo M. Jin
Software Mentions: 2
Published: about 14 years ago

10.1107/S2059798315021580

Using selenomethionyl derivatives to assign sequence in low-resolution structures of the AP2 clathrin adaptor
Cited by: 1
Author(s): Bernard T. Kelly, Stephen C. Graham, David J. Owen
Software Mentions: 2
Published: over 10 years ago

10.1038/srep11677

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.
Cited by: 135
Author(s): Marcus J. Edwards, Gaye F. White, Michael Norman, Alice Tome-Fernandez, Emma V. Ainsworth, Liang Shi, Jim K. Fredrickson, John M. Zachara, Julea N. Butt, David J. Richardson, Thomas A. Clarke
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0081526

Structural Insights into the Mechanism for Recognizing Substrate of the Cytochrome P450 Enzyme TxtE
Cited by: 18
Author(s): Feng Yu, Minjun Li, Chunyan Xu, Zhijun Wang, Huan Zhou, Min Yang, Yaxing Chen, Lin Tang, Jianhua He
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.bmc.2018.02.043

Structure activity relationship studies on rhodanines and derived enethiol inhibitors of metallo-β-lactamases
Cited by: 18
Author(s): D. Zhang, Marios S. Markoulides, Dmitrijs Stepanovs, Anna M. Rydzik, Ahmed El-Hussein, C. Bon, Jos J. A. G. Kamps, Klaus‐Daniel Umland, P. Collins, Samuel T. Cahill, D.Y. Wang, Frank von Delft, Jürgen Brem, McDonough, Christopher J. Schofield
Software Mentions: 2
Published: over 8 years ago

10.1107/S205979831900175X

Refinement of protein structures using a combination of quantum-mechanical calculations with neutron and X-ray crystallographic data
Cited by: 13
Author(s): Octav Caldararu, Francesco Manzoni, Esko Oksanen, D.T. Logan, Ulf Ryde
Software Mentions: 2
Published: over 7 years ago

10.1038/srep16950

Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis
Cited by: 57
Author(s): Sergio de Cima, Luis Mariano Polo, Carmen Dı́ez-Fernández, Ana Isabel Martínez, Javier Cervera, Ignacio Fita, Vicente Rubio
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0086050

Tracking Molecular Recognition at the Atomic Level with a New Protein Scaffold Based on the OB-Fold
Cited by: 18
Author(s): John D. Steemson, Matthias Baake, Jasna Rakonjac, Vickery L. Arcus, Mark T. Liddament
Software Mentions: 2
Published: almost 13 years ago

10.1107/S205979831601723X

The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservativeversusenthusiastic modelling
Cited by: 10
Author(s): Andreas Naschberger, Barbara G. Fürnrohr, Tihana Lenac Roviš, Suzana Malić, Klaus Scheffzek, Hans Dieplinger, Bernhard Rupp
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep22127

In-situ and real-time growth observation of high-quality protein crystals under quasi-microgravity on earth
Cited by: 7
Author(s): Akira Nakamura, Jun Ohtsuka, Tatsuki Kashiwagi, Nobutaka Numoto, Noriyuki Hirota, Takahiro Ode, Hidehiko Okada, Koji Nagata, Motosuke Kiyohara, E Suzuki, Akiko Kita, Hitoshi Wada, Masaru Tanokura
Software Mentions: 2
Published: over 10 years ago

10.1038/s42003-021-02068-3

Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin
Cited by: 5
Author(s): Miho Watanabe-Takahashi, Masakazu Tamada, Masuo Senda, M. Hibino, Eihan Shimizu, Akiko Okuta, Atsuo Miyazawa, Toshiya Senda, Kiyotaka Nishikawa
Software Mentions: 2
Published: over 5 years ago

10.1107/S1399004715016429

Structure of AadA fromSalmonella enterica: a monomeric aminoglycoside (3′′)(9) adenyltransferase
Cited by: 14
Author(s): Yang Chen, Joakim Näsvall, Shiying Wu, Dan I. Andersson, M. Selmer
Software Mentions: 2
Published: almost 11 years ago

10.1038/s42003-021-01750-w

The structural basis of function and regulation of neuronal cotransporters NKCC1 and KCC2
Cited by: 43
Author(s): Sensen Zhang, Jun Zhou, Yuebin Zhang, Tianya Liu, Perrine Friedel, Wei Zhuo, Suma Somasekharan, Kasturi Roy, Laixing Zhang, Yang Liu, Xianbin Meng, Haiteng Deng, Wenwen Zeng, Guohui Li, Bliss Forbush, Maojun Yang
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20170001

Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9
Cited by: 3
Author(s): Lifang Sun, Pu Chen, Su Y, Zhixiong Cai, Lingwei Ruan, Xun Xu, Yunkun Wu
Software Mentions: 2
Published: over 9 years ago

10.1038/srep33905

Structural and histone binding ability characterization of the ARB2 domain of a histone deacetylase Hda1 from Saccharomyces cerevisiae
Cited by: 7
Author(s): Hui Shen, Yuwei Zhu, Chongyuan Wang, Hui Yan, Maikun Teng, Li Xu
Software Mentions: 2
Published: about 10 years ago

10.1038/s42003-020-01147-1

Molecular basis of the lipid-induced MucA-MucB dissociation in Pseudomonas aeruginosa
Cited by: 6
Author(s): Tao Li, Libang He, Changcheng Li, Mei Kang, Yingjie Song, Yuanfeng Zhu, Yanjiao Shen, Ninglin Zhao, Chang Zhao, Jing Yang, Qin Huang, Xingyu Mou, Aiping Tong, Jinliang Yang, Zhenling Wang, Chengjie Ji, Hong Li, Hong Tang, Rui Bao
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0010504

Designed Inhibitors of Insulin-Degrading Enzyme Regulate the Catabolism and Activity of Insulin
Cited by: 94
Author(s): Malcolm A. Leissring, E. Malito, Sabrine Hedouin, Lael Reinstatler, Tomoko Sahara, Samer O. Abdul-Hay, Shakeel Choudhry, Ghulam M. Maharvi, Abdul H. Fauq, Malwina Huzarska, Philip S. May, Sung‐Woon Choi, Todd Logan, Benjamin E. Turk, Lewis C. Cantley, Marika Manolopoulou, Wei-Jen Tang, Ross L. Stein, Gregory D. Cuny, Dennis J. Selkoe
Software Mentions: 2
Published: over 16 years ago

10.1107/S1399004714015788

Solving the RNA polymerase I structural puzzle
Cited by: 21
Author(s): María Moreno-Morcillo, Nicholas M. I. Taylor, Tim Gruene, Pierre Legrand, Umar Rashid, Federico M. Ruiz, Ulrich Steuerwald, Christoph W. Müller, Carlos Fernández‐Tornero
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0070518

Mcm10 Self-Association Is Mediated by an N-Terminal Coiled-Coil Domain
Cited by: 15
Author(s): Wenyue Du, Ajeetha Josephrajan, Suraj Adhikary, Timothy M. Bowles, Anja‐Katrin Bielinsky, Brandt F. Eichman
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0167755

Biophysical Studies of the Induced Dimerization of Human VEGF Receptor 1 Binding Domain by Divalent Metals Competing with VEGF-A
Cited by: 10
Author(s): Jonathan Gaucher, Marie Reille‐Seroussi, Nathalie Gagey‐Eilstein, Sylvain Broussy, Pascale Coric, Bili Seijo, Marie-Bernard Lascombe, Benoît Gautier, Wang-Quing Liu, Florent Huguenot, Nicolas Inguimbert, Serge Bouaziz, Michel Vidal, Isabelle Broutin
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0224753

Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices
Cited by: 8
Author(s): Shigetoshi Oiki, Yusuke Nakamichi, Yukie Maruyama, Bunzo Mikami, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: almost 7 years ago

10.1038/s42003-020-01633-6

Elucidating the tunability of binding behavior for the MERS-CoV macro domain with NAD metabolites
Cited by: 3
Author(s): Meng-Hsuan Lin, Chao-Cheng Cho, Yi‐Chih Chiu, Chia‐Yu Chien, Yiping Huang, Chi‐Fon Chang, Chun‐Hua Hsu
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-01531-x

Structural insights into photoactivation of plant Cryptochrome-2
Cited by: 27
Author(s): Malathy Palayam, Jagadeesan Ganapathy, Angelica M. Guercio, Lior Tal, Samuel L. Deck, Nitzan Shabek
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0215555

Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing
Cited by: 6
Author(s): Jason R. Stagno, Ping Yü, Marcin Dyba, Yun‐Xing Wang, Yu Liu
Software Mentions: 2
Published: over 7 years ago

10.1042/BSR20150183

Epsilon glutathione transferases possess a unique class-conserved subunit interface motif that directly interacts with glutathione in the active site
Cited by: 10
Author(s): Jantana Wongsantichon, Robert Robinson, Albert J. Ketterman
Software Mentions: 2
Published: almost 11 years ago

10.1107/S0907444910007493

Features and development of Coot
Cited by: 21,554
Author(s): Paul Emsley, Bernhard Lohkamp, William G. Scott, Kevin Cowtan
Software Mentions: 2
Published: over 16 years ago

10.1038/srep42711

Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage ΦAB6 tailspike protein
Cited by: 37
Author(s): I‐Ming Lee, I-Fan Tu, Yang Fu, Tzu‐Ping Ko, Jiahn-Haur Liao, Ning Lin, Chung‐Yi Wu, Chien‐Tai Ren, Andrew H.‐J. Wang, Ching-Ming Chang, Kai‐Fa Huang, Shih‐Hsiung Wu
Software Mentions: 2
Published: over 9 years ago

10.15252/embj.2020106164

Cryo‐EM reveals the complex architecture of dynactin's shoulder region and pointed end
Cited by: 15
Author(s): C.K. Lau, Francis J. O’Reilly, S. Balaji, Samuel E Lacey, Juri Rappsilber, Andrew P. Carter
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0018413

Co-Crystal Structures of PKG Iβ (92–227) with cGMP and cAMP Reveal the Molecular Details of Cyclic-Nucleotide Binding
Cited by: 51
Author(s): Jeong Joo Kim, Darren E. Casteel, Gary B. Huang, Tai Hun Kwon, Ronnie Kuo Ren, Peter H. Zwart, Jeffrey J. Headd, Nicholas G. Brown, Dar Chone Chow, Timothy Palzkill, Choel Kim
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0024227

Get Phases from Arsenic Anomalous Scattering: de novo SAD Phasing of Two Protein Structures Crystallized in Cacodylate Buffer
Cited by: 22
Author(s): Xiang Liu, Heng Zhang, Wang Xiao-jun, Lanfen Li, Xiao‐Dong Su
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0042473

Crystal Structures of the Network-Forming Short-Arm Tips of the Laminin β1 and γ1 Chains
Cited by: 51
Author(s): Federico Carafoli, Sadaf-Ahmahni Hussain, Erhard Hohenester
Software Mentions: 2
Published: about 14 years ago

10.1107/S2059798315023116

Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects
Cited by: 11
Author(s): Christian Reichen, Chaithanya Madhurantakam, Simon Hansen, Markus G. Grütter, Andreas Plückthun, Peer R. E. Mittl
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-017-02805-x

A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases
Cited by: 32
Author(s): Rubén M. Buey, David Fernández‐Justel, Íñigo Marcos‐Alcalde, Graeme Winter, Paulino Gómez‐Puertas, José M. de Pereda, José Luis Revuelta
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0107000

Crystal Structure of the Mineralocorticoid Receptor DNA Binding Domain in Complex with DNA
Cited by: 39
Author(s): William Henry Hudson, Christine Youn, Eric A. Ortlund
Software Mentions: 2
Published: about 12 years ago

10.1042/BSR20193360

The Trp triad within the V-domain of the receptor for advanced glycation end products modulates folding, stability and ligand binding
Cited by: 2
Author(s): Venkata S.K. Indurthi, Jaime L. Jensen, Estelle Leclerc, Sangita C. Sinha, Christopher L. Colbert, Stefan Vetter
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-05268-2

Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight into the Enzymatic Cleavage of Rubber
Cited by: 25
Author(s): Lorena Ilcu, Wolf Röther, Jakob Birke, Anton Brausemann, Oliver Einsle, Dieter Jendrossek
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0196642

Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-06578-1

Structure of Chorismate Mutase-like Domain of DAHPS from Bacillus subtilis Complexed with Novel Inhibitor Reveals Conformational Plasticity of Active Site
Cited by: 11
Author(s): Shivendra Pratap, Aditya Dev, Vijay Kumar, Ravi Yadav, M. Narwal, Shailly Tomar, Pravindra Kumar
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01705-4

Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Cited by: 16
Author(s): Yunrong Gao, Defeng Li, Joy Fleming, Ya‐Feng Zhou, Ying Liu, Jiao-Yu Deng, Lin Zhou, Jie Zhou, Guofeng Zhu, Xian-En Zhang, Dacheng Wang, Lijun Bi
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pbio.3001209

Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes
Cited by: 31
Author(s): Dan Fu, Guangshun Zhang, Yuhui Wang, Zheng Zhang, Hengrui Hu, Shū Shěn, Jun Wu, Bo Li, Xin Li, Yaohui Fang, Jia Liu, Qiao Wang, Yunjiao Zhou, Wei Wang, Yufeng Li, Zhonghua Lu, Xiaoxiao Wang, Cui Nie, Yujie Tian, Da Chen, Yuan Wang, Xuan Zhou, Qisheng Wang, Feng Yu, Chen Zhang, Changjing Deng, Liang Zhou, Guang-kuo Guan, Ningsheng Shao, Zhiyong Lou, Fei Deng, Hongkai Zhang, Xinwen Chen, Manli Wang, Louis Liu, Zihe Rao, Yu Guo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.2005160

DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation
Cited by: 30
Author(s): Yasar Luqman Ahmed, Sibylle Schleich, Jonathan Bohlen, Nicolas Mandel, Bernd Simon, Irmgard Sinning, Aurelio A. Teleman
Software Mentions: 2
Published: over 8 years ago

10.1107/S2059798319010027

Structural comparison of protiated, H/D-exchanged and deuterated human carbonic anhydrase IX
Cited by: 11
Author(s): Katarina Koruza, Bénédicte Lafumat, Maria Nyblom, Brian P. Mahon, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0069833

An Activating Mutation Reveals a Second Binding Mode of the Integrin α2 I Domain to the GFOGER Motif in Collagens
Cited by: 29
Author(s): Federico Carafoli, Samir Hamaia, Dominique Bihan, Erhard Hohenester, Richard W. Farndale
Software Mentions: 2
Published: about 13 years ago

10.1107/S2053230X14017725

The structure of alanine racemase fromAcinetobacter baumannii
Cited by: 4
Author(s): Emily Davis, Emma Rose Scaletti, Helen K. Opel-Reading, Yoshio Nakatani, Kurt L. Krause
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0140984

Improving the pH-stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase
Cited by: 40
Author(s): Verónica Sáez-Jiménez, Elena Fernández‐Fueyo, F.J. Medrano, Antonio Romero, Ángel T. Martínez, Francisco J. Ruíz-Dueñas
Software Mentions: 2
Published: about 11 years ago

10.1038/s42003-019-0562-8

Identification of an amphipathic peptide sensor of the Bacillus subtilis fluid membrane microdomains
Cited by: 5
Author(s): Yiping Jiang, Xin Dai, Mingming Qin, Zhihong Guo
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0064426

Crystal Structure of Crataeva tapia Bark Protein (CrataBL) and Its Effect in Human Prostate Cancer Cell Lines
Cited by: 19
Author(s): Rodrigo S. Ferreira, Dongwen Zhou, Joana Gasperazzo Ferreira, Mariana Cristina Cabral Silva, Rosemeire A. Silva-Lucca, Reinhard Mentele, Edgar Julian Paredes‐Gamero, Thiago Carlos Bertolin, Maria Tereza dos Santos Correia, Patrícia Maria Guedes Paiva, Alla Gustchina, Alexander Wlodawer, Maria Luíza Vilela Oliva
Software Mentions: 2
Published: over 13 years ago

10.1107/S0907444912029599

Crystallization, dehydration and experimental phasing of WbdD, a bifunctional kinase and methyltransferase fromEscherichia coliO9a
Cited by: 5
Author(s): Gregor Hagelueken, Hexian Huang, K. Harlos, Bradley R. Clarke, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0097015

Structural Studies of an Anti-Inflammatory Lectin from Canavalia boliviana Seeds in Complex with Dimannosides
Cited by: 22
Author(s): G.A. Bezerra, Roland Viertlmayr, Tales Rocha de Moura, P. Delatorre, B.A.M. Rocha, Kyria S. Nascimento, Jozi Godoy Figueiredo, Ingrid Gonçalves Bezerra, C.S. Teixeira, Rafael Conceição Simões, Celso Shiniti Nagano, Nylane Maria Nunes de Alencar, Karl Gruber, Benildo S. Cavada
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0052066

Structural and Functional Insights into (S)-Ureidoglycolate Dehydrogenase, a Metabolic Branch Point Enzyme in Nitrogen Utilization
Cited by: 4
Author(s): Myungil Kim, Inchul Shin, Suhee Cho, Jee Hyun Lee, Sangkee Rhee
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13068-017-1009-4

Determination of the native features of the exoglucanase Cel48S from Clostridium thermocellum
Cited by: 21
Author(s): Yajun Li, Shiyue Liu, Sheng Dong, Renmin Li, Yingang Feng, Qiu Cui
Software Mentions: 2
Published: almost 9 years ago

10.1038/s42003-020-01266-9

Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy
Cited by: 17
Author(s): Hyunjin Cho, Yuri Choi, Kyoung‐Wook Min, Jung Bae Son, Hyojin Park, Hyung Ho Lee, Seokhee Kim
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-20925-w

Conserved, unstructured regions in Pseudomonas aeruginosa PilO are important for type IVa pilus function
Cited by: 12
Author(s): Tiffany L. Leighton, Mac C.Y. Mok, M.S. Junop, P. Lynne Howell, Lori L. Burrows
Software Mentions: 2
Published: over 8 years ago

10.1038/s42003-021-01739-5

Structure–function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis
Cited by: 2
Author(s): Hiroyuki Kajiura, Takumi Yoshizawa, Yuji Tokumoto, Nobuaki Suzuki, Shinya Takeno, Kanokwan Jumtee Takeno, Takuya Yamashita, Shun‐ichi Tanaka, Yoshinobu Kaneko, Kazuhito Fujiyama, Hideki Matsumura, Yasuhiro Nakazawa
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.3001386

Structural characterization of the Plasmodium falciparum lactate transporter PfFNT alone and in complex with antimalarial compound MMV007839 reveals its inhibition mechanism
Cited by: 9
Author(s): Xi Peng, Nan Wang, Angqi Zhu, Hanwen Xu, Jialu Li, Yanxia Zhou, Chen Wang, Qi Xiao, Li Guo, Fei Liu, Zhijun Jia, Huaichuan Duan, Jianping Hu, Weidan Yuan, Jia Geng, Chuangye Yan, Xin Jiang, Dong Deng
Software Mentions: 2
Published: about 5 years ago

10.1107/S2053230X16007263

Crystal structure of glutamate-1-semialdehyde-2,1-aminomutase fromArabidopsis thaliana
Cited by: 7
Author(s): Youhong Song, Hua Pu, Tianyue Jiang, Lixin Zhang, Ming Ouyang
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-018-22382-x

High-affinity ligands of the colchicine domain in tubulin based on a structure-guided design
Cited by: 35
Author(s): Oskía Bueno, Juan Estévez-Gallego, Solange Martins, A.E. Prota, Federico Gago, Asier Gómez-SanJuan, María‐José Camarasa, Isabel Barasoaín, Michel O. Steinmetz, J. Fernando Díaz, María‐Jesús Pérez‐Pérez, Sandra Liekens, Eva-Marı́a Priego
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-23821-5

Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis
Cited by: 3
Author(s): Tesmine Martin, Yuan‐Chao Lou, Chun Chou, Shu‐Yi Wei, Sushant Sadotra, Chao-Cheng Cho, Meng-Hsuan Lin, Jung-Hsiang Tai, Chun‐Hua Hsu, Chinpan Chen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0178752

Structural basis for 5'-ETS recognition by Utp4 at the early stages of ribosome biogenesis
Cited by: 3
Author(s): Fabiola R. Calviño, Markus Kornprobst, Géza Schermann, Fabienne Birkle, Klemens Wild, Tamás Fischer, Ed Hurt, Yasar Luqman Ahmed, Irmgard Sinning
Software Mentions: 2
Published: over 9 years ago

10.1038/s42003-020-01546-4

Structural basis of Naa20 activity towards a canonical NatB substrate
Cited by: 3
Author(s): Dominik Layer, Jürgen Kopp, Miriam Fontanillo, Maja Köhn, Karine Lapouge, Irmgard Sinning
Software Mentions: 2
Published: almost 6 years ago

10.1107/S0907444910006694

Introduction to phasing
Cited by: 80
Author(s): G.L. Taylor
Software Mentions: 2
Published: over 16 years ago

10.1107/S0907444913002023

The structures ofArabidopsisDeg5 and Deg8 reveal new insights into HtrA proteases
Cited by: 13
Author(s): Wei Sun, Feng Gao, H. Fan, Xiaoyue Shan, Renhua Sun, Lin Liu, Weimin Gong
Software Mentions: 2
Published: over 13 years ago

10.1038/s42003-019-0426-2

15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism
Cited by: 14
Author(s): Giancarlo Abis, Rebecca L. Charles, J. Kopec, Wyatt W. Yue, R. Andrew Atkinson, Tam T. Bui, Steven Lynham, Popova Sn, Yin-Biao Sun, Franca Fraternali, Philip Eaton, Maria R. Conte
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0191610

Crystal structure of a UDP-GlcNAc epimerase for surface polysaccharide biosynthesis in Acinetobacter baumannii
Cited by: 1
Author(s): Bhumika S. Shah, Heather E. Ashwood, S.J. Harrop, Daniel N. Farrugia, Ian T. Paulsen, Bridget C. Mabbutt
Software Mentions: 2
Published: almost 9 years ago

10.1002/cctc.202100110

A Structural View on the Stereospecificity of Plant Borneol‐Type Dehydrogenases
Cited by: 10
Author(s): Andrea M Chánique, Nicole Dimos, Ivana Drienovská, Elia Calderini, Mónica P. Pantín, Carl P. O. Helmer, Michaël Hofer, Volker Sieber, Loreto P. Parra, Bernhard Loll, Robert Kourist
Software Mentions: 2
Published: over 5 years ago

10.1107/S2053230X1402425X

The structure of the cyanobactin domain of unknown function from PatG in the patellamide gene cluster
Cited by: 15
Author(s): Greg Mann, Jesko Koehnke, Andrew F. Bent, R. Scott Graham, Wael E. Houssen, Marcel Jaspars, Ulrich Schwarz‐Linek, James H. Naismith
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-018-31808-5

Copper mediated amyloid-β binding to Transthyretin
Cited by: 24
Author(s): Lidia Ciccone, Carole Fruchart-Gaillard, Gilles Mourier, Martin Savko, Susanna Nencetti, Elisabetta Orlandini, Denis Servent, E.A. Stura, William Shepard
Software Mentions: 2
Published: about 8 years ago

10.1002/cbic.201800462

Structure and Catalytic Mechanism of a Bacterial Friedel–Crafts Acylase
Cited by: 23
Author(s): Tea Pavkov‐Keller, Nina G. Schmidt, Anna Żądło‐Dobrowolska, Wolfgang Kroutil, Karl Gruber
Software Mentions: 2
Published: almost 8 years ago

10.1107/S0907444912040590

Nearest-cell: a fast and easy tool for locating crystal matches in the PDB
Cited by: 13
Author(s): Varun Ramraj, Gwyndaf Evans, Jonathan M. Diprose, Robert Esnouf
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0239702

SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique
Cited by: 7
Author(s): Timothy R. Stachowski, M. Elizabeth Snell, Edward H. Snell
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0231513

Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121
Cited by: 8
Author(s): Keita Saito, Alexander Holm Viborg, Shiho Sakamoto, T. Arakawa, Chihaya Yamada, Kiyotaka Fujita, Shinya Fushinobu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.3000277

Structural insights into histone chaperone Chz1-mediated H2A.Z recognition and histone replacement
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Author(s): Yunyun Wang, Sheng Liu, Lu Sun, Ning Xu, Shan Shan, Fei Wu, Xiaoping Liang, Yingzi Huang, Ed Luk, Carl Wu, Zheng Zhou
Software Mentions: 2
Published: over 7 years ago

10.3390/cells8060570

An Emerin LEM-Domain Mutation Impairs Cell Response to Mechanical Stress
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Author(s): Nada Essawy, Camille Samson, Ambre Petitalot, Sophie Moog, Anne Bigot, Isaline Herrada, Agathe Marcelot, Ana-Andreea Arteni, Catherine Coirault, Sophie Zinn‐Justin
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798318013347

Improving the accuracy and resolution of neutron crystallographic data by three-dimensional profile fitting of Bragg peaks in reciprocal space
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Author(s): Brendan Sullivan, Rick Archibald, Patricia S. Langan, Holger Dobbek, Martin Bommer, Robert L. McFeeters, Leighton Coates, Xiaoping Wang, Franz X. Gallmeier, J.M. Carpenter, V. E. Lynch, Paul Langan
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-39020-9

Polyacrylamide injection matrix for serial femtosecond crystallography
Cited by: 36
Author(s): Jaehyun Park, Sehan Park, Jang Woo Kim, Gisu Park, Yunje Cho, Ki Hyun Nam
Software Mentions: 2
Published: over 7 years ago

10.1002/cbic.201300136

The Structure of Glycerol Trinitrate Reductase NerA fromAgrobacterium radiobacterReveals the Molecular Reason for Nitro‐ and Ene‐Reductase Activity in OYE Homologues
Cited by: 10
Author(s): Gustav Oberdorfer, Alexandra Binter, Silvia Wallner, Katharina Durchschein, Mélanie Hall, Kurt Faber, Peter Macheroux, Karl Gruber
Software Mentions: 2
Published: over 13 years ago

10.1038/s41422-021-00474-0

Structural mechanism of cooperative activation of the human calcium-sensing receptor by Ca2+ ions and L-tryptophan
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Author(s): Shenglong Ling, Peng Shi, Sanling Liu, Xianyu Meng, Ying Zhou, Wenjing Sun, Shenghai Chang, Xing Zhang, Longhua Zhang, Chaowei Shi, Degang Sun, Lei Liu, Changlin Tian
Software Mentions: 2
Published: over 5 years ago

10.1016/j.matbio.2017.02.002

Structural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin
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Author(s): Patricia Paracuellos, Sebastian Kalamajski, Arkadiusz Bonna, Dominique Bihan, Richard W. Farndale, Erhard Hohenester
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-41300-3

An engineered GH1 β-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials
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Author(s): Clelton A. Santos, M.A.B. Morais, Oliver M. Terrett, Jan J. Lyczakowski, L.M. Zanphorlin, Jaire A. Ferreira-Filho, C.C.C. Tonoli, Mário Tyago Murakami, Paul Dupree, Anete Pereira de Souza
Software Mentions: 2
Published: over 7 years ago

10.1038/s41422-020-0319-4

Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis
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Author(s): Guangli Huang, Yanqing Zhang, Xinhui Zhu, Chao Zeng, Qifan Wang, Qiang Zhou, Qinghua Tao, Minhao Liu, Jianlin Lei, Chuangye Yan, Yigong Shi
Software Mentions: 2
Published: over 6 years ago

10.1107/S1399004714005227

Structure of the unique SEFIR domain from human interleukin 17 receptor A reveals a composite ligand-binding site containing a conserved α-helix for Act1 binding and IL-17 signaling
Cited by: 29
Author(s): Bing Zhang, Caini Liu, Qian Wen, Yue Han, Xiaoxia Li, Junpeng Deng
Software Mentions: 2
Published: over 12 years ago

10.1107/S205979831801519X

Iron–sulfur clusters have no right angles
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Author(s): Nigel W. Moriarty, Paul D. Adams
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-50671-6

Scribble co-operatively binds multiple α1D-adrenergic receptor C-terminal PDZ ligands
Cited by: 13
Author(s): Eric M. Janezic, Dorathy-Ann Harris, Diana Dinh, Kyung-Soon Lee, Aaron Stewart, Thomas R. Hinds, Peter L. Hsu, Ning Zheng, Chris Hague
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.1001776

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
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Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0071835

Functional Mapping of Human Dynamin-1-Like GTPase Domain Based on X-ray Structure Analyses
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Author(s): Julia Wenger, Eva Klinglmayr, Chris Fröhlich, Clarissa Eibl, Ana Gimeno, Manuel Hessenberger, Sandra Puehringer, Oliver Daumke, Peter Goettig
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0020950

Conformational Changes of rBTI from Buckwheat upon Binding to Trypsin: Implications for the Role of the P8′ Residue in the Potato Inhibitor I Family
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Author(s): Long Wang, Fei Zhao, Mei Li, Hongmei Zhang, Yu Gao, Peng Cao, Xiaowei Pan, Zhuanhua Wang, Wenrui Chang
Software Mentions: 2
Published: over 15 years ago

10.1186/s12934-019-1190-1

Structural and functional characterization of a novel cold-active S-formylglutathione hydrolase (SfSFGH) homolog from Shewanella frigidimarina, a psychrophilic bacterium
Cited by: 11
Author(s): Chang Woo Lee, Woo-Kyoung Yoo, Sunha Park, Ly Le, Chang-Sung Jeong, Bum Han Ryu, Seung Chul Shin, Han-Woo Kim, Hyun Park, Kyeong Kyu Kim, T. Doohun Kim, Jun Hyuck Lee
Software Mentions: 2
Published: about 7 years ago

10.1107/S2059798318005764

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation
Cited by: 6
Author(s): Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-56557-x

Structure-Guided Design of a Fluorescent Probe for the Visualization of FtsZ in Clinically Important Gram-Positive and Gram-Negative Bacterial Pathogens
Cited by: 20
Author(s): Edgar Ferrer-González, Junnosuke Fujita, Takumi Yoshizawa, Julia M. Nelson, Alyssa Pilch, Elani Hillman, M. Ozawa, Natsuko Kuroda, Hassan Al-Tameemi, Jeffrey M. Boyd, Edmond J. LaVoie, Hideki Matsumura, Daniel S. Pilch
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56135-1

Shortening injection matrix for serial crystallography
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Author(s): Ki Hyun Nam
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56825-w

Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase
Cited by: 1
Author(s): Na Li, Ke Shi, Timsi Rao, Surajit Banerjee, Hideki Aihara
Software Mentions: 2
Published: almost 7 years ago

10.1107/S0907444913018167

Improving experimental phases for strong reflections prior to density modification
Cited by: 7
Author(s): Monarin Uervirojnangkoorn, Rolf Hilgenfeld, Thomas C. Terwilliger, Randy J. Read
Software Mentions: 2
Published: about 13 years ago

10.1016/j.celrep.2019.01.073

Control of Bacterial Virulence through the Peptide Signature of the Habitat
Cited by: 39
Author(s): Emilia Krypotou, Mariela Scortti, C. Grundström, Melanie Oelker, Ben F. Luisi, A. Elisabeth Sauer‐Eriksson, José A. Vázquez‐Boland
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0064901

Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold
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Author(s): A. Goepfert, Frédéric V. Stanger, Christoph Dehio, Tilman Schirmer
Software Mentions: 2
Published: over 13 years ago

10.1107/S1399004714018732

Structural basis for the recognition of muramyltripeptide byHelicobacter pyloriCsd4, a<scp>D</scp>,<scp>L</scp>-carboxypeptidase controlling the helical cell shape
Cited by: 19
Author(s): Hyoun Sook Kim, Jieun Kim, Ha Na Im, Doo Ri An, Mijoon Lee, Dušan Hesek, Shahriar Mobashery, Jin Young Kim, Kun Cho, Hye Jin Yoon, Byung Woo Han, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: about 12 years ago

10.1016/j.celrep.2020.108274

An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain
Cited by: 139
Author(s): Nicholas C. Wu, Meng Yuan, Hejun Liu, Chang-Chun David Lee, Xueyong Zhu, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0224689

Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms
Cited by: 2
Author(s): Myeong Yeon Lee, Jun Young Lee, Hyun Kyu Joo, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2053230X14017087

Structure ofToxoplasma gondiifructose-1,6-bisphosphate aldolase
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Author(s): Lauren Boucher, Jürgen Bosch
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0034918

Insights into the Mechanism of Bovine CD38/NAD+Glycohydrolase from the X-Ray Structures of Its Michaelis Complex and Covalently-Trapped Intermediates
Cited by: 20
Author(s): Pascal F. Egea, Hélène Muller-Steffner, Isabelle Kuhn, Céline Cakir-Kiefer, Norman J. Oppenheimer, Robert M. Stroud, Esther Kellenberger, Francis Schuber
Software Mentions: 2
Published: over 14 years ago

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Papers Mentioning PHENIX 2,287