Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PHENIX

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PHENIX

Phenotypic Integration Index
7 versions
Latest release: over 7 years ago
1 dependent package
161 downloads last month

Papers Mentioning PHENIX 2,287

10.15252/embj.2020106164
Cryo‐EM reveals the complex architecture of dynactin's shoulder region and pointed end
Cited by: 15
Author(s): C.K. Lau, Francis J. O’Reilly, S. Balaji, Samuel E Lacey, Juri Rappsilber, Andrew P. Carter
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-017-01705-4
Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Cited by: 16
Author(s): Yunrong Gao, Defeng Li, Joy Fleming, Ya‐Feng Zhou, Ying Liu, Jiao-Yu Deng, Lin Zhou, Jie Zhou, Guofeng Zhu, Xian-En Zhang, Dacheng Wang, Lijun Bi
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-08019-5
Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain
Cited by: 6
Author(s): Shin‐ichi Terawaki, Shohei Fujita, Takuya Katsutani, Kensuke Shiomi, Kazuko Keino‐Masu, Masayuki Masu, Kaori Wakamatsu, Naoki Shibata, Yoshiki Higuchi
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pbio.3001209
Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes
Cited by: 31
Author(s): Dan Fu, Guangshun Zhang, Yuhui Wang, Zheng Zhang, Hengrui Hu, Shū Shěn, Jun Wu, Bo Li, Xin Li, Yaohui Fang, Jia Liu, Qiao Wang, Yunjiao Zhou, Wei Wang, Yufeng Li, Zhonghua Lu, Xiaoxiao Wang, Cui Nie, Yujie Tian, Da Chen, Yuan Wang, Xuan Zhou, Qisheng Wang, Feng Yu, Chen Zhang, Changjing Deng, Liang Zhou, Guang-kuo Guan, Ningsheng Shao, Zhiyong Lou, Fei Deng, Hongkai Zhang, Xinwen Chen, Manli Wang, Louis Liu, Zihe Rao, Yu Guo
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-017-14754-6
Structural basis of small molecule ATPase inhibition of a human mitotic kinesin motor protein
Cited by: 24
Author(s): Hee Won Park, Zhongjun Ma, Haizhong Zhu, Shimin Jiang, Robert Robinson, Sharyn A. Endow
Software Mentions: 2
Published: about 7 years ago
10.3390/biom11070996
Crystal Structure Reveals the Full Ras–Raf Interface and Advances Mechanistic Understanding of Raf Activation
Cited by: 28
Author(s): Trinity Cookis, Carla Mattos
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0107289
Structure of the N-Terminal Gyrase B Fragment in Complex with ADP⋅Pi Reveals Rigid-Body Motion Induced by ATP Hydrolysis
Cited by: 44
Author(s): Frédéric V. Stanger, Christoph Dehio, Tilman Schirmer
Software Mentions: 2
Published: about 10 years ago
10.3390/biom9030093
Structural Analysis of the 42 kDa Parvulin of Trypanosoma brucei
Cited by: 0
Author(s): Edisa Rehic, Dana Hoenig, Bianca Kamba, Anna Goehring, Eckhard Hofmann, Raphael Gasper, Anja Matena, Peter Bayer
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-017-16421-2
A half-site multimeric enzyme achieves its cooperativity without conformational changes
Cited by: 14
Author(s): Mirella Vivoli, Jiuxia Pang, Nicholas J. Harmer
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pbio.2005160
DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation
Cited by: 30
Author(s): Yasar Luqman Ahmed, Sibylle Schleich, Jonathan Bohlen, Nicolas Mandel, Bernd Simon, Irmgard Sinning, Aurelio A. Teleman
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-017-17694-3
Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B
Cited by: 28
Author(s): Ke Shi, Özlem Demir, Michael A. Carpenter, J. D. Wagner, Kayo Kurahashi, Reuben S. Harris, Rommie E. Amaro, Hideki Aihara
Software Mentions: 2
Published: almost 7 years ago
10.1107/S2053230X14017725
The structure of alanine racemase from<i>Acinetobacter baumannii</i>
Cited by: 4
Author(s): Emily Davis, Emma Rose Scaletti, Helen K. Opel-Reading, Yoshio Nakatani, Kurt L. Krause
Software Mentions: 2
Published: about 10 years ago
10.1038/s42003-019-0562-8
Identification of an amphipathic peptide sensor of the Bacillus subtilis fluid membrane microdomains
Cited by: 5
Author(s): Yiping Jiang, Xin Dai, Mingming Qin, Zhihong Guo
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0015535
Quantitative High-Throughput Screening Identifies 8-Hydroxyquinolines as Cell-Active Histone Demethylase Inhibitors
Cited by: 195
Author(s): Oliver N. King, Xuan Shirley Li, Masaaki Sakurai, Akane Kawamura, Nathan R. Rose, Stanley S. Ng, Amy Quinn, Ganesha Rai, Bryan T. Mott, Paul J. Beswick, Robert J. Klose, U. Oppermann, Ajit Jadhav, Tom D. Heightman, David J. Maloney, Christopher J. Schofield, Anton Simeonov
Software Mentions: 2
Published: about 14 years ago
10.3390/biom11010043
On the Mechanism of Bioinspired Formation of Inorganic Oxides: Structural Evidence of the Electrostatic Nature of the Interaction between a Mononuclear Inorganic Precursor and Lysozyme
Cited by: 3
Author(s): Lucia Gigli, Enrico Ravera, V. Calderone, Claudio Luchinat
Software Mentions: 2
Published: almost 4 years ago
10.1107/S0907444912029599
Crystallization, dehydration and experimental phasing of WbdD, a bifunctional kinase and methyltransferase from<i>Escherichia coli</i>O9a
Cited by: 5
Author(s): Gregor Hagelueken, Hexian Huang, K. Harlos, Bradley R. Clarke, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: about 12 years ago
10.1038/s42003-020-01266-9
Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy
Cited by: 17
Author(s): Hyunjin Cho, Yuri Choi, Kyoung‐Wook Min, Jung Bae Son, Hyojin Park, Hyung Ho Lee, Seokhee Kim
Software Mentions: 2
Published: about 4 years ago
10.1107/S2059798315021580
Using selenomethionyl derivatives to assign sequence in low-resolution structures of the AP2 clathrin adaptor
Cited by: 1
Author(s): Bernard T. Kelly, Stephen C. Graham, David J. Owen
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-018-24276-4
Tau Antibody Structure Reveals a Molecular Switch Defining a Pathological Conformation of the Tau Protein
Cited by: 19
Author(s): Jessica E. Chukwu, Jan T. Pedersen, Lars Østergaard Pedersen, Christiane Volbracht, Einar M. Sigurdsson, Xiang‐Peng Kong
Software Mentions: 2
Published: over 6 years ago
10.1038/s42003-021-01739-5
Structure–function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis
Cited by: 2
Author(s): Hiroyuki Kajiura, Takumi Yoshizawa, Yuji Tokumoto, Nobuaki Suzuki, Shinya Takeno, Kanokwan Jumtee Takeno, Takuya Yamashita, Shun‐ichi Tanaka, Yoshinobu Kaneko, Kazuhito Fujiyama, Hideki Matsumura, Yasuhiro Nakazawa
Software Mentions: 2
Published: almost 4 years ago
10.1016/j.bmc.2018.02.043
Structure activity relationship studies on rhodanines and derived enethiol inhibitors of metallo-β-lactamases
Cited by: 18
Author(s): D. Zhang, Marios S. Markoulides, Dmitrijs Stepanovs, Anna M. Rydzik, Ahmed El-Hussein, C. Bon, Jos J. A. G. Kamps, Klaus‐Daniel Umland, P. Collins, Samuel T. Cahill, D.Y. Wang, Frank von Delft, Jürgen Brem, McDonough, Christopher J. Schofield
Software Mentions: 2
Published: over 6 years ago
10.1107/S205979831900175X
Refinement of protein structures using a combination of quantum-mechanical calculations with neutron and X-ray crystallographic data
Cited by: 13
Author(s): Octav Caldararu, Francesco Manzoni, Esko Oksanen, D.T. Logan, Ulf Ryde
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-018-27175-w
An Evolutionarily Conserved Structural Platform for PRC2 Inhibition by a Class of Ezh2 Inhibitors
Cited by: 26
Author(s): Matthew Bratkowski, Xin Yang, Xin Liu
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pbio.3001386
Structural characterization of the Plasmodium falciparum lactate transporter PfFNT alone and in complex with antimalarial compound MMV007839 reveals its inhibition mechanism
Cited by: 9
Author(s): Xi Peng, Nan Wang, Angqi Zhu, Hanwen Xu, Jialu Li, Yanxia Zhou, Chen Wang, Qi Xiao, Li Guo, Fei Liu, Zhijun Jia, Huaichuan Duan, Jianping Hu, Weidan Yuan, Jia Geng, Chuangye Yan, Xin Jiang, Dong Deng
Software Mentions: 2
Published: about 3 years ago
10.1107/S2053230X16007263
Crystal structure of glutamate-1-semialdehyde-2,1-aminomutase from<i>Arabidopsis thaliana</i>
Cited by: 7
Author(s): Youhong Song, Hua Pu, Tianyue Jiang, Lixin Zhang, Ming Ouyang
Software Mentions: 2
Published: over 8 years ago
10.1038/s41598-018-29498-0
Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica
Cited by: 8
Author(s): Hajime Unno, Azusa Nakamura, Shigeo Mori, Shuichiro Goda, Kensei Yamaguchi, Keiko Hiemori, Hiroaki Tateno, Tomomitsu Hatakeyama
Software Mentions: 2
Published: over 6 years ago
10.1038/s42003-020-01546-4
Structural basis of Naa20 activity towards a canonical NatB substrate
Cited by: 3
Author(s): Dominik Layer, Jürgen Kopp, Miriam Fontanillo, Maja Köhn, Karine Lapouge, Irmgard Sinning
Software Mentions: 2
Published: almost 4 years ago
10.1107/S0907444910006694
Introduction to phasing
Cited by: 80
Author(s): G.L. Taylor
Software Mentions: 2
Published: over 14 years ago
10.1107/S0907444913002023
The structures of<i>Arabidopsis</i>Deg5 and Deg8 reveal new insights into HtrA proteases
Cited by: 13
Author(s): Wei Sun, Feng Gao, H. Fan, Xiaoyue Shan, Renhua Sun, Lin Liu, Weimin Gong
Software Mentions: 2
Published: over 11 years ago
10.1038/s42003-019-0426-2
15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism
Cited by: 14
Author(s): Giancarlo Abis, Rebecca L. Charles, J. Kopec, Wyatt W. Yue, R. Andrew Atkinson, Tam T. Bui, Steven Lynham, Popova Sn, Yin-Biao Sun, Franca Fraternali, Philip Eaton, Maria R. Conte
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-018-37806-x
Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis
Cited by: 8
Author(s): Noriyuki Ogawa, Takehide Kimura, Fumi Umehara, Yuki Katayama, Go Nagai, Keiko Suzuki, Kazuo Aisaka, Yukie Maruyama, Takafumi Itoh, Wataru Hashimoto, Kousaku Murata, Michio Ichimura
Software Mentions: 2
Published: almost 6 years ago
10.1002/cctc.202100110
A Structural View on the Stereospecificity of Plant Borneol‐Type Dehydrogenases
Cited by: 10
Author(s): Andrea M Chánique, Nicole Dimos, Ivana Drienovská, Elia Calderini, Mónica P. Pantín, Carl P. O. Helmer, Michaël Hofer, Volker Sieber, Loreto P. Parra, Bernhard Loll, Robert Kourist
Software Mentions: 2
Published: over 3 years ago
10.1107/S2053230X1402425X
The structure of the cyanobactin domain of unknown function from PatG in the patellamide gene cluster
Cited by: 15
Author(s): Greg Mann, Jesko Koehnke, Andrew F. Bent, R. Scott Graham, Wael E. Houssen, Marcel Jaspars, Ulrich Schwarz‐Linek, James H. Naismith
Software Mentions: 2
Published: about 10 years ago
10.1107/S1399004714015788
Solving the RNA polymerase I structural puzzle
Cited by: 21
Author(s): María Moreno-Morcillo, Nicholas M. I. Taylor, Tim Gruene, Pierre Legrand, Umar Rashid, Federico M. Ruiz, Ulrich Steuerwald, Christoph W. Müller, Carlos Fernández‐Tornero
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0070518
Mcm10 Self-Association Is Mediated by an N-Terminal Coiled-Coil Domain
Cited by: 15
Author(s): Wenyue Du, Ajeetha Josephrajan, Suraj Adhikary, Timothy M. Bowles, Anja‐Katrin Bielinsky, Brandt F. Eichman
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0167755
Biophysical Studies of the Induced Dimerization of Human VEGF Receptor 1 Binding Domain by Divalent Metals Competing with VEGF-A
Cited by: 10
Author(s): Jonathan Gaucher, Marie Reille‐Seroussi, Nathalie Gagey‐Eilstein, Sylvain Broussy, Pascale Coric, Bili Seijo, Marie-Bernard Lascombe, Benoît Gautier, Wang-Quing Liu, Florent Huguenot, Nicolas Inguimbert, Serge Bouaziz, Michel Vidal, Isabelle Broutin
Software Mentions: 2
Published: almost 8 years ago
10.1371/journal.pone.0224753
Streptococcal phosphotransferase system imports unsaturated hyaluronan disaccharide derived from host extracellular matrices
Cited by: 8
Author(s): Shigetoshi Oiki, Yusuke Nakamichi, Yukie Maruyama, Bunzo Mikami, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: about 5 years ago
10.1002/cbic.201800462
Structure and Catalytic Mechanism of a Bacterial Friedel–Crafts Acylase
Cited by: 23
Author(s): Tea Pavkov‐Keller, Nina G. Schmidt, Anna Żądło‐Dobrowolska, Wolfgang Kroutil, Karl Gruber
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0216979
Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis
Cited by: 2
Author(s): Ke Shi, Chong-Min Kyung, Kelly G. Aukema, Thomas Lee, Asim K. Bera, Jennifer L. Seffernick, Lawrence P. Wackett, Hideki Aihara
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0215555
Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing
Cited by: 6
Author(s): Jason R. Stagno, Ping Yü, Marcin Dyba, Yun‐Xing Wang, Yu Liu
Software Mentions: 2
Published: over 5 years ago
10.1042/BSR20150183
Epsilon glutathione transferases possess a unique class-conserved subunit interface motif that directly interacts with glutathione in the active site
Cited by: 10
Author(s): Jantana Wongsantichon, Robert Robinson, Albert J. Ketterman
Software Mentions: 2
Published: about 9 years ago
10.1107/S0907444910007493
Features and development of <i>Coot</i>
Cited by: 21,554
Author(s): Paul Emsley, Bernhard Lohkamp, William G. Scott, Kevin Cowtan
Software Mentions: 2
Published: over 14 years ago
10.1038/s41598-019-46230-8
Structural characterization of life-extending Caenorhabditis elegans Lipid Binding Protein 8
Cited by: 8
Author(s): Matthew Tillman, Manoj Khadka, Jonathon Duffy, Meng C. Wang, Eric A. Ortlund
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pbio.3000277
Structural insights into histone chaperone Chz1-mediated H2A.Z recognition and histone replacement
Cited by: 17
Author(s): Yunyun Wang, Sheng Liu, Lu Sun, Ning Xu, Shan Shan, Fei Wu, Xiaoping Liang, Yingzi Huang, Ed Luk, Carl Wu, Zheng Zhou
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0018413
Co-Crystal Structures of PKG Iβ (92–227) with cGMP and cAMP Reveal the Molecular Details of Cyclic-Nucleotide Binding
Cited by: 51
Author(s): Jeong Joo Kim, Darren E. Casteel, Gary B. Huang, Tai Hun Kwon, Ronnie Kuo Ren, Peter H. Zwart, Jeffrey J. Headd, Nicholas G. Brown, Dar Chone Chow, Timothy Palzkill, Choel Kim
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0024227
Get Phases from Arsenic Anomalous Scattering: de novo SAD Phasing of Two Protein Structures Crystallized in Cacodylate Buffer
Cited by: 22
Author(s): Xiang Liu, Heng Zhang, Wang Xiao-jun, Lanfen Li, Xiao‐Dong Su
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0042473
Crystal Structures of the Network-Forming Short-Arm Tips of the Laminin β1 and γ1 Chains
Cited by: 51
Author(s): Federico Carafoli, Sadaf-Ahmahni Hussain, Erhard Hohenester
Software Mentions: 2
Published: over 12 years ago
10.1107/S2059798315023116
Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects
Cited by: 11
Author(s): Christian Reichen, Chaithanya Madhurantakam, Simon Hansen, Markus G. Grütter, Andreas Plückthun, Peer R. E. Mittl
Software Mentions: 2
Published: almost 9 years ago
10.1038/s41598-019-56557-x
Structure-Guided Design of a Fluorescent Probe for the Visualization of FtsZ in Clinically Important Gram-Positive and Gram-Negative Bacterial Pathogens
Cited by: 20
Author(s): Edgar Ferrer-González, Junnosuke Fujita, Takumi Yoshizawa, Julia M. Nelson, Alyssa Pilch, Elani Hillman, M. Ozawa, Natsuko Kuroda, Hassan Al-Tameemi, Jeffrey M. Boyd, Edmond J. LaVoie, Hideki Matsumura, Daniel S. Pilch
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0107000
Crystal Structure of the Mineralocorticoid Receptor DNA Binding Domain in Complex with DNA
Cited by: 39
Author(s): William Henry Hudson, Christine Youn, Eric A. Ortlund
Software Mentions: 2
Published: about 10 years ago
10.1042/BSR20193360
The Trp triad within the V-domain of the receptor for advanced glycation end products modulates folding, stability and ligand binding
Cited by: 2
Author(s): Venkata S.K. Indurthi, Jaime L. Jensen, Estelle Leclerc, Sangita C. Sinha, Christopher L. Colbert, Stefan Vetter
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-58316-9
Comparative study of the interactions between fungal transcription factor nuclear localization sequences with mammalian and fungal importin-alpha
Cited by: 7
Author(s): Natália Elisa Bernardes, C.A. Fukuda, Tainá D. da Silva, H.C. Oliveira, Andrea C. de Barros, Thiago R. Dreyer, Maria Célia Bertolini, Marcos R.M. Fontes
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0196642
Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-61972-6
Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity
Cited by: 4
Author(s): Teruya Nakamura, Chie Hashikawa, Kohtaro Okabe, Yuya Yokote, Mami Chirifu, Sachiko Toma-Fukai, Narushi Nakamura, Mihoko Matsuo, Miho Kamikariya, Yoshinari Okamoto, Jin Gohda, Taishin Akiyama, Kentaro Semba, Shinji Ikemizu, Masami Otsuka, Jun Inoue, Yuriko Yamagata
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-62548-0
Structural basis for substrate and product recognition in human phosphoglucomutase-1 (PGM1) isoform 2, a member of the α-d-phosphohexomutase superfamily
Cited by: 9
Author(s): Paul Hoff Backe, Jon K. Laerdahl, Lene Svendsen Kittelsen, Bjørn Dalhus, Lars Mørkrid, Magnar Bjørås
Software Mentions: 2
Published: over 4 years ago
10.3390/cells8060570
An Emerin LEM-Domain Mutation Impairs Cell Response to Mechanical Stress
Cited by: 12
Author(s): Nada Essawy, Camille Samson, Ambre Petitalot, Sophie Moog, Anne Bigot, Isaline Herrada, Agathe Marcelot, Ana-Andreea Arteni, Catherine Coirault, Sophie Zinn‐Justin
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-65993-z
Single atom changes in newly synthesized HIV protease inhibitors reveal structural basis for extreme affinity, high genetic barrier, and adaptation to the HIV protease plasticity
Cited by: 10
Author(s): Haydar Bulut, Shin-ichiro Hattori, Hiromi Aoki-Ogata, Hironori Hayashi, Debananda Das, Manabu Aoki, David A. Davis, Kalapala Venkateswara Rao, Prasanth R. Nyalapatla, Arun K. Ghosh, Hiroaki Mitsuya
Software Mentions: 2
Published: over 4 years ago
10.1107/S2059798319010027
Structural comparison of protiated, H/D-exchanged and deuterated human carbonic anhydrase IX
Cited by: 11
Author(s): Katarina Koruza, Bénédicte Lafumat, Maria Nyblom, Brian P. Mahon, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0069833
An Activating Mutation Reveals a Second Binding Mode of the Integrin α2 I Domain to the GFOGER Motif in Collagens
Cited by: 29
Author(s): Federico Carafoli, Samir Hamaia, Dominique Bihan, Erhard Hohenester, Richard W. Farndale
Software Mentions: 2
Published: over 11 years ago
10.1002/cbic.201300136
The Structure of Glycerol Trinitrate Reductase NerA from<i>Agrobacterium radiobacter</i>Reveals the Molecular Reason for Nitro‐ and Ene‐Reductase Activity in OYE Homologues
Cited by: 10
Author(s): Gustav Oberdorfer, Alexandra Binter, Silvia Wallner, Katharina Durchschein, Mélanie Hall, Kurt Faber, Peter Macheroux, Karl Gruber
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0140984
Improving the pH-stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase
Cited by: 40
Author(s): Verónica Sáez-Jiménez, Elena Fernández‐Fueyo, F.J. Medrano, Antonio Romero, Ángel T. Martínez, Francisco J. Ruíz-Dueñas
Software Mentions: 2
Published: about 9 years ago
10.1038/s41422-021-00474-0
Structural mechanism of cooperative activation of the human calcium-sensing receptor by Ca2+ ions and L-tryptophan
Cited by: 39
Author(s): Shenglong Ling, Peng Shi, Sanling Liu, Xianyu Meng, Ying Zhou, Wenjing Sun, Shenghai Chang, Xing Zhang, Longhua Zhang, Chaowei Shi, Degang Sun, Lei Liu, Changlin Tian
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0064426
Crystal Structure of Crataeva tapia Bark Protein (CrataBL) and Its Effect in Human Prostate Cancer Cell Lines
Cited by: 19
Author(s): Rodrigo S. Ferreira, Dongwen Zhou, Joana Gasperazzo Ferreira, Mariana Cristina Cabral Silva, Rosemeire A. Silva-Lucca, Reinhard Mentele, Edgar Julian Paredes‐Gamero, Thiago Carlos Bertolin, Maria Tereza dos Santos Correia, Patrícia Maria Guedes Paiva, Alla Gustchina, Alexander Wlodawer, Maria Luíza Vilela Oliva
Software Mentions: 2
Published: over 11 years ago
10.1038/s41422-020-0319-4
Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis
Cited by: 48
Author(s): Guangli Huang, Yanqing Zhang, Xinhui Zhu, Chao Zeng, Qifan Wang, Qiang Zhou, Qinghua Tao, Minhao Liu, Jianlin Lei, Chuangye Yan, Yigong Shi
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0097015
Structural Studies of an Anti-Inflammatory Lectin from Canavalia boliviana Seeds in Complex with Dimannosides
Cited by: 22
Author(s): G.A. Bezerra, Roland Viertlmayr, Tales Rocha de Moura, P. Delatorre, B.A.M. Rocha, Kyria S. Nascimento, Jozi Godoy Figueiredo, Ingrid Gonçalves Bezerra, C.S. Teixeira, Rafael Conceição Simões, Celso Shiniti Nagano, Nylane Maria Nunes de Alencar, Karl Gruber, Benildo S. Cavada
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0052066
Structural and Functional Insights into (S)-Ureidoglycolate Dehydrogenase, a Metabolic Branch Point Enzyme in Nitrogen Utilization
Cited by: 4
Author(s): Myungil Kim, Inchul Shin, Suhee Cho, Jee Hyun Lee, Sangkee Rhee
Software Mentions: 2
Published: almost 12 years ago
10.1186/s13068-017-1009-4
Determination of the native features of the exoglucanase Cel48S from Clostridium thermocellum
Cited by: 21
Author(s): Yajun Li, Shiyue Liu, Sheng Dong, Renmin Li, Yingang Feng, Qiu Cui
Software Mentions: 2
Published: almost 7 years ago
10.1107/S1399004714005227
Structure of the unique SEFIR domain from human interleukin 17 receptor A reveals a composite ligand-binding site containing a conserved α-helix for Act1 binding and IL-17 signaling
Cited by: 29
Author(s): Bing Zhang, Caini Liu, Qian Wen, Yue Han, Xiaoxia Li, Junpeng Deng
Software Mentions: 2
Published: over 10 years ago
10.1038/s41598-021-84373-9
A SPRY1 domain cardiac ryanodine receptor variant associated with short-coupled torsade de pointes
Cited by: 8
Author(s): Zahia Touat-Hamici, Malorie Blancard, Ruijing Ma, Lei Lin, Yasmine Iddir, Isabelle Denjoy, Antoine Leenhardt, Zhiguang Yuchi, Pascale Guicheney
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0122512
Crystal Structure of a Two-Subunit TrkA Octameric Gating Ring Assembly
Cited by: 2
Author(s): Marc C. Deller, Hope A. Johnson, Mitchell D. Miller, Glen Spraggon, Marc‐André Elsliger, Ian A. Wilson, Scott A. Lesley
Software Mentions: 2
Published: over 9 years ago
10.1038/s41598-021-92687-x
Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography
Cited by: 15
Author(s): Ki Hyun Nam, Jihan Kim, Yunje Cho
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pbio.1001776
Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
Cited by: 97
Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: almost 11 years ago
10.1126/science.abe6230
Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape
Cited by: 271
Author(s): Paul Koenig, Hrishikesh Das, Hejun Liu, Beate M. Kümmerer, Florian N. Gohr, Lea-Marie Jenster, Lisa Dominica Jacoba Schiffelers, Yonas Mehari Tesfamariam, Miki Uchima, Jennifer Deborah Wuerth, Karl Gatterdam, Natalia Ruétalo, Maria H Christensen, Caroline I. Fandrey, Sabine Normann, Jan M. P. Tödtmann, Steffen Pritzl, Leo Hanke, Jannik Boos, Meng Yuan, Xueyong Zhu, Jonathan L. Schmid-Burgk, Hiroki Kato, Michael Schindler, Ian A. Wilson, Matthias Geyer, Kerstin U. Ludwig, Bengt Hållberg, Nicholas C. Wu, Florian I. Schmidt
Software Mentions: 2
Published: almost 4 years ago
10.1107/S0907444913018167
Improving experimental phases for strong reflections prior to density modification
Cited by: 7
Author(s): Monarin Uervirojnangkoorn, Rolf Hilgenfeld, Thomas C. Terwilliger, Randy J. Read
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0178752
Structural basis for 5'-ETS recognition by Utp4 at the early stages of ribosome biogenesis
Cited by: 3
Author(s): Fabiola R. Calviño, Markus Kornprobst, Géza Schermann, Fabienne Birkle, Klemens Wild, Tamás Fischer, Ed Hurt, Yasar Luqman Ahmed, Irmgard Sinning
Software Mentions: 2
Published: over 7 years ago
10.1016/j.celrep.2019.01.073
Control of Bacterial Virulence through the Peptide Signature of the Habitat
Cited by: 39
Author(s): Emilia Krypotou, Mariela Scortti, C. Grundström, Melanie Oelker, Ben F. Luisi, A. Elisabeth Sauer‐Eriksson, José A. Vázquez‐Boland
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.celrep.2020.108274
An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain
Cited by: 139
Author(s): Nicholas C. Wu, Meng Yuan, Hejun Liu, Chang-Chun David Lee, Xueyong Zhu, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 2
Published: about 4 years ago
10.1107/S2053230X14017087
Structure of<i>Toxoplasma gondii</i>fructose-1,6-bisphosphate aldolase
Cited by: 8
Author(s): Lauren Boucher, Jürgen Bosch
Software Mentions: 2
Published: about 10 years ago
10.1016/j.celrep.2018.05.046
Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design
Cited by: 52
Author(s): Kimmo Rantalainen, Zachary T. Berndsen, Sasha Murrell, Liwei Cao, Oluwarotimi Omorodion, Jonathan L. Torres, Mengyu Wu, Jeffrey C. Umotoy, Jeffrey Copps, Pascal Poignard, Elise Landais, James C. Paulson, Ian A. Wilson, Andrew B. Ward
Software Mentions: 2
Published: over 6 years ago
10.1016/j.celrep.2016.06.022
Structural Insights into Arl1-Mediated Targeting of the Arf-GEF BIG1 to the trans-Golgi
Cited by: 25
Author(s): Antonio Galindo, Nicolas Soler, Stephen H. McLaughlin, Myeong-Hee Yu, Roger L. Williams, Sean Munro
Software Mentions: 2
Published: over 8 years ago
10.1107/S2053230X15024565
Structure of the human histone chaperone FACT Spt16 N-terminal domain
Cited by: 14
Author(s): Gabriele Marcianò, Danny T. Huang
Software Mentions: 2
Published: almost 9 years ago
10.1107/S139900471501857X
Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Cited by: 50
Author(s): Takanori Nakane, Changyong Song, Mamoru Suzuki, Eriko Nango, Jun Kobayashi, Tetsuya Masuda, Shiro Inoue, Eiichi Mizohata, Toru Nakatsu, Tomoyuki Tanaka, Rie Tanaka, Tatsuro Shimamura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, So Iwata, Michihiro Sugahara
Software Mentions: 2
Published: about 9 years ago
10.1021/acs.jmedchem.1c00663
Xanthine Derivatives Reveal an Allosteric Binding Site in Methylenetetrahydrofolate Dehydrogenase 2 (MTHFD2)
Cited by: 7
Author(s): Lung-Chun Lee, Yi-Hui Peng, Hsin-Huei Chang, Tsu Hsu, Chih Heng Lu, Chiung‐Shiann Huang, Ching-Cheng Hsueh, Fang-Chun Kung, Ching‐Chuan Kuo, Weir‐Torn Jiaang, Su-Ying Wu
Software Mentions: 2
Published: over 3 years ago
10.1016/j.chom.2019.04.011
Conformational Plasticity in the HIV-1 Fusion Peptide Facilitates Recognition by Broadly Neutralizing Antibodies
Cited by: 38
Author(s): Meng Yuan, Christopher A. Cottrell, Gabriel Ozorowski, Marit J. van Gils, Sonu Kumar, Nicholas C. Wu, Achyut Sarkar, Jonathan L. Torres, Natalia de Val, Jeffrey Copps, John P. Moore, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 2
Published: over 5 years ago
10.1107/S0907444912040590
Nearest-cell: a fast and easy tool for locating crystal matches in the PDB
Cited by: 13
Author(s): Varun Ramraj, Gwyndaf Evans, Jonathan M. Diprose, Robert Esnouf
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0239702
SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique
Cited by: 7
Author(s): Timothy R. Stachowski, M. Elizabeth Snell, Edward H. Snell
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0231513
Crystal structure of β-L-arabinobiosidase belonging to glycoside hydrolase family 121
Cited by: 8
Author(s): Keita Saito, Alexander Holm Viborg, Shiho Sakamoto, T. Arakawa, Chihaya Yamada, Kiyotaka Fujita, Shinya Fushinobu
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0062021
Structure of the Non-Catalytic Domain of the Protein Disulfide Isomerase-Related Protein (PDIR) Reveals Function in Protein Binding
Cited by: 20
Author(s): R. Vinaik, Guennadi Kozlov, Kalle Gehring
Software Mentions: 2
Published: over 11 years ago
10.26508/lsa.202000776
Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis
Cited by: 22
Author(s): Hongwen Chen, Yang Liu, Xiaochun Li
Software Mentions: 2
Published: over 4 years ago
10.1107/S2059798318013347
Improving the accuracy and resolution of neutron crystallographic data by three-dimensional profile fitting of Bragg peaks in reciprocal space
Cited by: 23
Author(s): Brendan Sullivan, Rick Archibald, Patricia S. Langan, Holger Dobbek, Martin Bommer, Robert L. McFeeters, Leighton Coates, Xiaoping Wang, Franz X. Gallmeier, J.M. Carpenter, V. E. Lynch, Paul Langan
Software Mentions: 2
Published: about 6 years ago
10.1063/1.5023460
Non-steric-zipper models for pathogenic α-synuclein conformers
Cited by: 0
Author(s): Brock Schuman, Amy Won, Koroboshka Brand-Arzamendi, James B. Koprich, Xiao‐Yan Wen, Patrick A. Howson, Jonathan M. Brotchie, Christopher M. Yip
Software Mentions: 2
Published: over 6 years ago
10.1038/s41421-018-0037-y
Inward-facing conformation of l-ascorbate transporter suggests an elevator mechanism
Cited by: 9
Author(s): Ping Luo, Shengyang Dai, Jianwei Zeng, Jingliang Duan, Hui Shi, Jiawei Wang
Software Mentions: 2
Published: over 6 years ago
10.1016/j.chom.2020.06.010
Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike
Cited by: 280
Author(s): Jiandong Huo, Yuguang Zhao, Jingshan Ren, Daming Zhou, Duyvesteyn Hme., H. Ginn, L. Carrique, Tomas Malinauskas, R.R. Ruza, Pranav N.M. Shah, Tiong Kit Tan, Pramila Rijal, Naomi Coombes, Kevin R. Bewley, Julia A. Tree, Julika Radecke, Neil G. Paterson, Piyasa Supasa, Juthathip Mongkolsapaya, Gavin Screaton, Miles W. Carroll, Alain Townsend, Elizabeth E. Fry, Raymond J. Owens, D.I. Stuart
Software Mentions: 2
Published: about 4 years ago
10.1016/j.matbio.2017.02.002
Structural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin
Cited by: 31
Author(s): Patricia Paracuellos, Sebastian Kalamajski, Arkadiusz Bonna, Dominique Bihan, Richard W. Farndale, Erhard Hohenester
Software Mentions: 2
Published: about 7 years ago
10.1016/j.jmb.2015.01.012
Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme
Cited by: 21
Author(s): Wenyuan Liang, Min Ren, Fan Zhao, Wei-Jen Tang
Software Mentions: 2
Published: over 9 years ago
10.1038/s41422-020-0363-0
CryoEM structure of the tegumented capsid of Epstein-Barr virus
Cited by: 17
Author(s): Zhihai Li, Xiao Zhang, Lili Dong, Jingjing Pang, Miao Xu, Qian Zhong, Mu‐Sheng Zeng, Xuekui Yu
Software Mentions: 2
Published: over 4 years ago
10.1107/S1399004714013455
Interaction of serum amyloid P component with hexanoyl bis(<scp>D</scp>-proline) (CPHPC)
Cited by: 10
Author(s): Simon Kolstoe, Michelle C. Jenvey, Alan Purvis, Mark E. Light, Darren A. Thompson, P.I. Hughes, Mark B. Pepys, Stephen P. Wood
Software Mentions: 2
Published: over 10 years ago
10.1107/S205979831801519X
Iron–sulfur clusters have no right angles
Cited by: 15
Author(s): Nigel W. Moriarty, Paul D. Adams
Software Mentions: 2
Published: almost 6 years ago
10.1016/j.jmb.2008.01.072
Structures of the Shigella flexneri Type 3 Secretion System Protein MxiC Reveal Conformational Variability Amongst Homologues
Cited by: 33
Author(s): Janet E. Deane, Pietro Roversi, Carole King, Steven Johnson, Susan M. Lea
Software Mentions: 2
Published: over 16 years ago
10.1038/celldisc.2016.44
A unified molecular mechanism for the regulation of acetyl-CoA carboxylase by phosphorylation
Cited by: 27
Author(s): Wei Jia, Yixiao Zhang, Tai-Yuan Yu, Kianoush Sadre-Bazzaz, M. Rudolph, Gabriele A. Amodeo, Lorraine S. Symington, Thomas Walz, Liang Tong
Software Mentions: 2
Published: almost 8 years ago