cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: almost 11 years ago

10.1107/S1399004715009438

High-resolution crystal structures of the solubilized domain of porcine cytochromeb5
Cited by: 3
Author(s): Yu Hirano, Shigenobu Kimura, Taro Tamada
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1002484

Structural Basis of Transcriptional Gene Silencing Mediated by Arabidopsis MOM1
Cited by: 22
Author(s): Takehiro Nishimura, Guillaume Molinard, Tom J. Petty, Larissa Broger, Caroline Gabus, Thanos D. Halazonetis, Stéphane Thore, Jerzy Paszkowski
Software Mentions: 2
Published: almost 13 years ago

10.1107/S2053230X15024437

Crystal structure of the flavoenzyme PA4991 fromPseudomonas aeruginosa
Cited by: 0
Author(s): Agata Jacewicz, R. Schnell, Ylva Lindqvist, Günter Schneider
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pntd.0005374

Structure of SALO, a leishmaniasis vaccine candidate from the sand fly Lutzomyia longipalpis
Cited by: 10
Author(s): Oluwatoyin A. Asojo, Alan Kelleher, Zhuyun Liu, Jeroen Pollet, Elissa M. Hudspeth, Wanderson Rezende, Mallory Jo Groen, Christopher A. Seid, Maha Abdeladhim, Shannon E. Townsend, Waldionê de Castro, Antonio Ferreira Mendes-Sousa, Daniella Castanheira Bartholomeu, Ricardo Toshio Fujiwara, María Elena Bottazzi, Peter J. Hotez, Bin Zhan, Fabiano Oliveira, Shaden Kamhawi, Jesús G. Valenzuela
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: almost 10 years ago

10.1107/S2053230X14003793

1.55 Å resolution X-ray crystal structure of Rv3902c fromMycobacterium tuberculosis
Cited by: 1
Author(s): Bharat Reddy, Derek Moates, Heung-Bok Kim, Todd Green, Chang-Yub Kim, Thomas C. Terwilliger, Lawrence J. DeLucas
Software Mentions: 2
Published: over 10 years ago

10.1107/S1744309112044739

The AEROPATH project targetingPseudomonas aeruginosa: crystallographic studies for assessment of potential targets in early-stage drug discovery
Cited by: 30
Author(s): L. Moynié, R. Schnell, S.A. McMahon, T. Sandalova, Wassila Abdelli Boulkerou, J.W. Schmidberger, M.S. Alphey, C.D. Cukier, F.G. Duthie, J. Kopec, Huanting Liu, Agata Jacewicz, William N. Hunter, James H. Naismith, Günter Schneider
Software Mentions: 2
Published: almost 12 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: over 9 years ago

10.1107/S1399004715000152

Structure of Csd3 fromHelicobacter pylori, a cell shape-determining metallopeptidase
Cited by: 17
Author(s): Doo Ri An, Hyoun Sook Kim, Jieun Kim, Ha Na Im, Hye Jin Yoon, Ji Young Yoon, Jun Young Jang, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pntd.0004132

Structural and Functional Characterization of the Enantiomers of the Antischistosomal Drug Oxamniquine
Cited by: 18
Author(s): Alexander B. Taylor, Livia Pica‐Mattoccia, C. Polcaro, Enrica Donati, Xiaoguang Cao, Annalisa Basso, Алессандра Гуиди, Anastasia R. Rugel, S. Holloway, Timothy J. Anderson, P. John Hart, Donato Cioli, Philip T. LoVerde
Software Mentions: 2
Published: about 9 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: almost 9 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: almost 9 years ago

10.1107/S1399004713033841

Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting
Cited by: 46
Author(s): Lei Chen, Tian Liu, Yong Zhou, Qi Chen, Xu Shen, Qing Yang
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0033524

Carbohydrate Recognition by an Architecturally Complex α-N-Acetylglucosaminidase from Clostridium perfringens
Cited by: 42
Author(s): E. Ficko-Blean, C.P. Stuart, M.D.L. Suits, Melissa Cid, Matthew B. Tessier, Robert J. Woods, A.B. Boraston
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.ppat.1005248

An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum
Cited by: 31
Author(s): Adela S. Oliva Chávez, J.W. Fairman, Roderick F. Felsheim, Curtis M. Nelson, Michael J. Herron, Lee Ann Higgins, Nicole Y. Burkhardt, Jonathan D. Oliver, Todd W. Markowski, Timothy J. Kurtti, Thomas E. Edwards, Ulrike G. Munderloh
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0081904

New Conformational State of NHERF1-CXCR2 Signaling Complex Captured by Crystal Lattice Trapping
Cited by: 10
Author(s): Yuanyuan Jiang, Guorong Lu, Laura Trescott, Yuning Hou, Xiaoqing Guan, Shuo Wang, Angelique Stamenkovich, J.S. Brunzelle, Nualpun Sirinupong, Chunying Li, Zhe Yang
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1005351

Mycobacterial Metabolic Syndrome: LprG and Rv1410 Regulate Triacylglyceride Levels, Growth Rate and Virulence in Mycobacterium tuberculosis
Cited by: 76
Author(s): Amanda J. Martinot, Mary F. Farrow, Lu Bai, Emilie Layre, Tan-Yun Cheng, Jennifer Tsai, Jahangir Iqbal, John W. Annand, Zuri A. Sullivan, M. Mahmood Hussain, James C. Sacchettini, D. Branch Moody, Jessica C. Seeliger, Eric J. Rubín
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0004656

Unusual Armadillo Fold in the Human General Vesicular Transport Factor p115
Cited by: 25
Author(s): Harald Striegl, Yvette Roske, Daniel Kümmel, Udo Heinemann
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0080298

Diversification of Fungal Specific Class A Glutathione Transferases in Saprotrophic Fungi
Cited by: 37
Author(s): Yann Mathieu, P. Prosper, F. Favier, Luc Harvengt, Claude Didierjean, Jean‐Pierre Jacquot, Mélanie Morel‐Rouhier, Éric Gelhaye
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0242383

The crystal structure of mouse IRG1 suggests that cis-aconitate decarboxylase has an open and closed conformation
Cited by: 4
Author(s): Hye Lin Chun, So Yeon Lee, Ki-Hwa Kim, Chang Sup Lee, Tae‐Jin Oh, Hyun Ho Park
Software Mentions: 2
Published: almost 4 years ago

10.1107/S1744309111019312

Conservation of a crystallographic interface suggests a role for β-sheet augmentation in influenza virus NS1 multifunctionality
Cited by: 9
Author(s): Philip S. Kerry, Eric C. Long, Margaret Taylor, Rosemary Russell
Software Mentions: 2
Published: over 13 years ago

10.1107/S0907444912017453

Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement withPrimeX
Cited by: 19
Author(s): Jeffrey A. Bell, Kenneth L. Ho, Ramy Farid
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0026021

Structural and Biochemical Studies of Human 4-hydroxy-2-oxoglutarate Aldolase: Implications for Hydroxyproline Metabolism in Primary Hyperoxaluria
Cited by: 49
Author(s): Travis J. Riedel, Lynnette C. Johnson, John Knight, Roy R. Hantgan, Ross P. Holmes, W. Todd Lowther
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.ppat.1006098

Receptor Activation of HIV-1 Env Leads to Asymmetric Exposure of the gp41 Trimer
Cited by: 31
Author(s): Mukta D. Khasnis, Konstantine Halkidis, Anshul Bhardwaj, Michael J. Root
Software Mentions: 2
Published: almost 8 years ago

10.1007/s00401-021-02336-w

Structure of Tau filaments in Prion protein amyloidoses
Cited by: 41
Author(s): Grace I. Hallinan, Md Rejaul Hoq, Manali Ghosh, Frank S. Vago, Anllely Fernández, Holly J. Garringer, Rubén Vidal, Wen Jiang, Bernardino Ghetti
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0167763

Crystal Structure of the Streptomyces coelicolor Sortase E1 Transpeptidase Provides Insight into the Binding Mode of the Novel Class E Sorting Signal
Cited by: 21
Author(s): Michele D. Kattke, Albert H. Chan, Andrew Duong, Danielle L. Sexton, M.R. Sawaya, Duilio Cascio, Marie A. Elliot, Robert T. Clubb
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.ppat.1006231

Structure of a pentameric virion-associated fiber with a potential role in Orsay virus entry to host cells
Cited by: 10
Author(s): Yingying Fan, Yusong R. Guo, Yuan Wang, Ying Zhou, Matthew V. Holt, Tao Wang, Borries Demeler, Nicolas L. Young, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1006400

Structural insights into reptarenavirus cap-snatching machinery
Cited by: 27
Author(s): Maria Rosenthal, Nadja Gogrefe, Dominik Vogel, Juan Reguera, Bianka Rauschenberger, Stephen Cusack, Stephan Günther, Sophia Reindl
Software Mentions: 2
Published: over 7 years ago

10.1007/s00401-021-02294-3

Cryo-EM structures of tau filaments from Alzheimer’s disease with PET ligand APN-1607
Cited by: 94
Author(s): Yang Shi, Alexey G. Murzin, Benjamin Falcon, A. Epstein, Jonathan Machin, Paul Tempest, Kathy L. Newell, Rubén Vidal, Holly J. Garringer, Naruhiko Sahara, Makoto Higuchi, Bernardino Ghetti, Ming‐Kuei Jang, S.H.W. Scheres, Michel Goedert
Software Mentions: 2
Published: over 3 years ago

10.1107/S1399004714027114

Interaction of the amyloid precursor protein-like protein 1 (APLP1) E2 domain with heparan sulfate involves two distinct binding modes
Cited by: 12
Author(s): S.O. Dahms, Magnus C. Mayer, Dirk Roeser, Gerd Multhaup, Manuel E. Than
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1006714

A mobile loop near the active site acts as a switch between the dual activities of a viral protease/deubiquitinase
Cited by: 15
Author(s): Isabelle Jupin, Maya Ayach, Lucile Jomat, Sonia Fieulaine, Stéphane Bressanelli
Software Mentions: 2
Published: about 7 years ago

10.1107/S0907444911007888

Structure of HLA-A*0301 in complex with a peptide of proteolipid protein: insights into the role of HLA-A alleles in susceptibility to multiple sclerosis
Cited by: 27
Author(s): Róisín M. McMahon, Lone Smidstrup Friis, Christian Siebold, Manuel A. Friese, Lars Fugger, E Y Jones
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0096198

Structural Basis for the Site-Specific Incorporation of Lysine Derivatives into Proteins
Cited by: 16
Author(s): Veronika Flügel, Milan Vrábel, Sabine Schneider
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1006935

Structural basis for recognition of the central conserved region of RSV G by neutralizing human antibodies
Cited by: 45
Author(s): Harrison G. Jones, Tina Ritschel, Gabriel Pascual, Just P. J. Brakenhoff, Elissa Keogh, Polina Furmanova-Hollenstein, Ellen Lanckacker, Jehangir S. Wadia, M.S.A. Gilman, R. Anthony Williamson, Dirk Roymans, Angélique B. van ’t Wout, Johannes P. M. Langedijk, Jason S. McLellan
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0146457

The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex
Cited by: 14
Author(s): N. Silva-Martin, María I. Daudén, Sebastian Glatt, N.A. Hoffmann, Panagiotis L. Kastritis, Peer Bork, Martin Beck, Christoph W. Müller
Software Mentions: 2
Published: almost 9 years ago

10.3390/antib9020010

Ion Binding Properties of a Naturally Occurring Metalloantibody
Cited by: 0
Author(s): Elinaz Farokhi, Jonathan K. Fleming, M. Frank Erasmus, Aaron D Ward, Yunjin Wu, Maria Gaby Rivero de Gutiérrez, Jonathan M. Wojciak, Tom Huxford
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0092249

Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Cited by: 20
Author(s): Keisuke Sugimoto, Masuo Senda, Daisuke Kasai, Masao Fukuda, Eiji Masai, Toshiya Senda
Software Mentions: 2
Published: over 10 years ago

10.1107/S1399004714001850

A conformational landscape for alginate secretion across the outer membrane ofPseudomonas aeruginosa
Cited by: 44
Author(s): Jian Tan, Sarah L. Rouse, Dianfan Li, V.E. Pye, Lutz Vogeley, Alette Brinth, Toufic El Arnaout, John C. Whitney, P. Lynne Howell, Mark S. P. Sansom, Martin Caffrey
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1007476

Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress
Cited by: 10
Author(s): Alfredo J. Guerra, Ou Zhang, Constance M. Bahr, My Hang Huynh, James Delproposto, William Clay Brown, Z. Wawrzak, Nicole M. Koropatkin, Vern B. Carruthers
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0175815

Biochemical and structural investigations on phosphoribosylpyrophosphate synthetase from Mycobacterium smegmatis
Cited by: 18
Author(s): Stefano Donini, Silvia Garavaglia, Davide M. Ferraris, Riccardo Miggiano, Shiro Mori, Keigo Shibayama, Menico Rizzi
Software Mentions: 2
Published: over 7 years ago

10.1128/AAC.00681-18

Structure-Based Drug Design and Characterization of Sulfonyl-Piperazine Benzothiazinone Inhibitors of DprE1 from Mycobacterium tuberculosis
Cited by: 41
Author(s): Jéremie Piton, Anthony Vocat, Andréanne Lupien, Caroline S. Foo, Olga Riabova, Vadim Makarov, Stewart T. Cole
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0206260

Crystal structure and functional characterization of a cold-active acetyl xylan esterase (PbAcE) from psychrophilic soil microbe Paenibacillus sp.
Cited by: 21
Author(s): Sunha Park, Woo-Kyoung Yoo, Chang Woo Lee, Chang-Sung Jeong, Seung Chul Shin, Han-Woo Kim, Hyun Park, Kyeong Kyu Kim, T. Doohun Kim, Jun Hyuck Lee
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1007944

Alternative conformations of a major antigenic site on RSV F
Cited by: 25
Author(s): Harrison G. Jones, Michael B. Battles, Chun-Chi Lin, Siro Bianchi, Davide Corti, Jason S. McLellan
Software Mentions: 2
Published: over 5 years ago

10.1107/S1399004714001308

Automated identification of elemental ions in macromolecular crystal structures
Cited by: 37
Author(s): Nathaniel Echols, Nader Morshed, Pavel V. Afonine, Airlie J. McCoy, Mitchell D. Miller, Randy J. Read, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0098551

Identification of NAD(P)H Quinone Oxidoreductase Activity in Azoreductases from P. aeruginosa: Azoreductases and NAD(P)H Quinone Oxidoreductases Belong to the Same FMN-Dependent Superfamily of Enzymes
Cited by: 50
Author(s): Ali Ryan, Elise Kaplan, Jean‐Christophe Nebel, Elena Polycarpou, Vincenzo Crescente, E.D. Lowe, Gail M. Preston, Edith Sim
Software Mentions: 2
Published: over 10 years ago

10.1107/S1399004714013455

Interaction of serum amyloid P component with hexanoyl bis(<scp>D</scp>-proline) (CPHPC)
Cited by: 10
Author(s): Simon Kolstoe, Michelle C. Jenvey, Alan Purvis, Mark E. Light, Darren A. Thompson, P.I. Hughes, Mark B. Pepys, Stephen P. Wood
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1008323

Structural basis of Fusarium myosin I inhibition by phenamacril
Cited by: 17
Author(s): Yuxin Zhou, Xuemei Zhou, Yuanping Gong, Yuanye Zhu, Xiaoman Cao, J.S. Brunzelle, H. Eric Xu, Mingguo Zhou, Karsten Melcher, Feng Zhang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008465

Structure of the protective nematode protease complex H-gal-GP and its conservation across roundworm parasites
Cited by: 13
Author(s): Charlotte A. Scarff, Rebecca Thompson, G. F. J. Newlands, A.H. Jamson, Christopher K. Kennaway, V.J. da Silva, Élida Mara Leite Rabelo, Chun Song, John Trinick, W.D. Smith, Stephen P. Muench
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008484

A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase
Cited by: 24
Author(s): Jiqin Wu, Han-Qing Ye, Qiuyan Zhang, Guangquan Lu, Bo Zhang, Peng Gong
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0175317

Differential CLE peptide perception by plant receptors implicated from structural and functional analyses of TDIF-TDR interactions
Cited by: 15
Author(s): Zhijie Li, Sayan Chakraborty, Gang Xu
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1008619

Dynamic rotation of the protruding domain enhances the infectivity of norovirus
Cited by: 31
Author(s): Chihong Song, Reiko Takai‐Todaka, Motohiro Miki, Kei Haga, Akira Fujimoto, Ryoka Ishiyama, Kazuki Oikawa, Masahiro Yokoyama, Naoyuki Miyazaki, Katsunori Iwasaki, Kosuke Murakami, Kazuhiko Katayama, Kazuyoshi Murata
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008530

Cryo-EM structure of the fully-loaded asymmetric anthrax lethal toxin in its heptameric pre-pore state
Cited by: 16
Author(s): Claudia Antoni, Dennis Quentin, Alexander E. Lang, Klaus Aktories, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 2
Published: over 4 years ago

10.1128/AAC.01636-16

Active-Site Protonation States in an Acyl-Enzyme Intermediate of a Class A β-Lactamase with a Monobactam Substrate
Cited by: 27
Author(s): Venu Gopal Vandavasi, Patricia S. Langan, Kevin L. Weiss, Jerry M. Parks, J.B. Cooper, Stephan L. Ginell, Leighton Coates
Software Mentions: 2
Published: almost 8 years ago

10.1107/S1399004714019725

Structural characterization of the virulence factor nuclease A fromStreptococcus agalactiae
Cited by: 7
Author(s): A.F. Moon, Philippe Gaudu, Lars C. Pedersen
Software Mentions: 2
Published: about 10 years ago

10.1107/S1399004714022755

Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi
Cited by: 33
Author(s): Elena Fernández‐Fueyo, Sandra Acebes, Francisco J. Ruíz-Dueñas, Marı́a Jesús Martı́nez, Antonio Romero, F.J. Medrano, Vı́ctor Guallar, Ángel T. Martı́nez
Software Mentions: 2
Published: about 10 years ago

10.1073/pnas.1811580115

Structure and architecture of immature and mature murine leukemia virus capsids
Cited by: 87
Author(s): Kun Qu, Bärbel Glass, Michal Doležal, F.K.M. Schur, Brice Murciano, Alan Rein, Michaela Rumlová, Tomáš Ruml, Hans‐Georg Kräusslich, John Briggs
Software Mentions: 2
Published: almost 6 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: over 5 years ago

10.3390/antiox7120171

Crystal Structure of Chloroplastic Thioredoxin f2 from Chlamydomonas reinhardtii Reveals Distinct Surface Properties
Cited by: 16
Author(s): Stéphane D. Lemaire, Daniele Tedesco, Pierre Crozet, Laure Michelet, Simona Fermani, Mirko Zaffagnini, Julien Henri
Software Mentions: 2
Published: about 6 years ago

10.1107/S0907444913018167

Improving experimental phases for strong reflections prior to density modification
Cited by: 7
Author(s): Monarin Uervirojnangkoorn, Rolf Hilgenfeld, Thomas C. Terwilliger, Randy J. Read
Software Mentions: 2
Published: about 11 years ago

10.1073/pnas.1921245117

Ancient MAPK ERK7 is regulated by an unusual inhibitory scaffold required for Toxoplasma apical complex biogenesis
Cited by: 37
Author(s): Peter Back, William O’Shaughnessy, Andy S Moon, Pravin S Dewangan, Xiaoyu Hu, Jihui Sha, James A. Wohlschlegel, Peter J. Bradley, Michael L. Reese
Software Mentions: 2
Published: over 4 years ago

10.1073/pnas.2006231117

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6
Cited by: 35
Author(s): Ziming Yuan, Sarah Schneider, Thomas Dodd, Alberto Riera, Lin Bai, Yan Cheng, Marta Barbon, Indiana Magdalou, Ivaylo Ivanov, Bruce Stillman, Li H, Christian Speck
Software Mentions: 2
Published: over 4 years ago

10.1107/S1399004714005227

Structure of the unique SEFIR domain from human interleukin 17 receptor A reveals a composite ligand-binding site containing a conserved α-helix for Act1 binding and IL-17 signaling
Cited by: 29
Author(s): Bing Zhang, Caini Liu, Qian Wen, Yue Han, Xiaoxia Li, Junpeng Deng
Software Mentions: 2
Published: over 10 years ago

10.1073/pnas.2014896117

The SERCA residue Glu340 mediates interdomain communication that guides Ca 2+ transport
Cited by: 11
Author(s): Maxwell M. G. Geurts, Johannes Clausen, Bertrand Arnou, Cédric Montigny, Guillaume Lenoir, Robin A. Corey, Christine Jaxel, Jesper Møller, Poul Nissen, Jens Peter Andersen, Marc le Maire, Maike Bublitz
Software Mentions: 2
Published: about 4 years ago

10.1128/AEM.01692-19

Crystal Structure of the Catalytic and Cytochrome b Domains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase
Cited by: 15
Author(s): Kouta Takeda, Takuya Ishida, Makoto Yoshida, Masahiro Samejima, Hiroyuki Ohno, Kiyohiko Igarashi, Nobuhumi Nakamura
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0094166

Biochemical Properties and Atomic Resolution Structure of a Proteolytically Processed β-Mannanase from Cellulolytic Streptomyces sp. SirexAA-E
Cited by: 16
Author(s): Taichi E. Takasuka, Justin Acheson, C.M. Bianchetti, Ben M. Prom, Lai F. Bergeman, Adam J. Book, Cameron R. Currie, Brian G. Fox
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0050055

Tolerance of Protein Folding to a Circular Permutation in a PDZ Domain
Cited by: 13
Author(s): Greta Hultqvist, Avinash S. Punekar, Angela Morrone, N. Celestine, Åke Engström, M. Selmer, Stefano Gianni, Per Jemth
Software Mentions: 2
Published: about 12 years ago

10.1073/pnas.2020486118

Early-stage dynamics of chloride ion–pumping rhodopsin revealed by a femtosecond X-ray laser
Cited by: 35
Author(s): Ji Hye Yun, Xuanxuan Li, Jianing Yue, Jae Hyun Park, Zeyu Jin, Chufeng Li, Hao Hu, Yingchen Shi, Suraj Pandey, Sergio Carbajo, Sébastien Boutet, Mark S. Hunter, Mao Liang, Raymond G. Sierra, Thomas J Lane, Liang Zhou, Uwe Weierstall, Nadia A. Zatsepin, Mio Ohki, J.R.H. Tame, Sam Yong Park, John C. H. Spence, Wenkai Zhang, Marius Schmidt, Weontae Lee, Haiguang Liu
Software Mentions: 2
Published: over 3 years ago

10.1107/S0907444910006694

Introduction to phasing
Cited by: 80
Author(s): G.L. Taylor
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0087267

Crystal Structure of Arginine Methyltransferase 6 from Trypanosoma brucei
Cited by: 23
Author(s): Chongyuan Wang, Yuwei Zhu, Jiajia Chen, Xu Li, Junxia Peng, Jiajing Chen, Yang Zou, Zhiyong Zhang, Hongtao Jin, Pengyuan Yang, Jihui Wu, Liwen Niu, Qingguo Gong, Maikun Teng, Yunyu Shi
Software Mentions: 2
Published: almost 11 years ago

10.1073/pnas.2101349118

Periscope Proteins are variable-length regulators of bacterial cell surface interactions
Cited by: 11
Author(s): Fiona Whelan, Aleix Lafita, James Gilburt, Clément Dégut, Samuel C. Griffiths, Huw T. Jenkins, Alexander N. St John, Emanuele Paci, James Moir, Michael J. Plevin, Christoph G. Baumann, Alex Bateman, Jennifer R. Potts
Software Mentions: 2
Published: over 3 years ago

10.1073/pnas.2101496118

Structure of autoinhibited Akt1 reveals mechanism of PIP3-mediated activation
Cited by: 29
Author(s): Linda Truebestein, Harald Hornegger, Dorothea Anrather, Markus Hartl, Kaelin D Fleming, Jordan T B Stariha, Els Pardon, Jan Steyaert, John E. Burke, Thomas A. Leonard
Software Mentions: 2
Published: over 3 years ago

10.1073/pnas.2111172118

DNA-encoded chemistry technology yields expedient access to SARS-CoV-2 M pro inhibitors
Cited by: 31
Author(s): Srinivas Chamakuri, Shuo Lu, Melek N. Ucisik, Kurt M. Bohren, Ying-Chu Chen, Huang-Chi Du, John C. Faver, Ravikumar Jimmidi, Li Feng, Jianyuan Li, Pranavanand Nyshadham, Stephen Palmer, Jeroen Pollet, Xuan Qin, Shannon E. Ronca, Banumathi Sankaran, Kiran Sharma, Zhi Tan, Leroy Versteeg, Zhifeng Yu, Martin M. Matzuk, Timothy Palzkill, Damian W. Young
Software Mentions: 2
Published: over 3 years ago

10.1007/s13238-014-0087-3

Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71
Cited by: 83
Author(s): Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang, Lin Jiao, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe Rao
Software Mentions: 2
Published: over 10 years ago

10.1007/s00253-014-6015-x

Biochemical and structural characterization of a thermostable β-glucosidase from Halothermothrix orenii for galacto-oligosaccharide synthesis
Cited by: 57
Author(s): Noor Hassan, Thu Hà Nguyễn, Montira Intanon, Lokesh D. Kori, Bharat K. C. Patel, Dietmar Haltrich, Christina Divne, T.C. Tan
Software Mentions: 2
Published: about 10 years ago

10.1007/s13238-014-0038-z

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII
Cited by: 4
Author(s): Wei Zhuo, Xuhui Lai, Liqing Zhang, Siu-Hong Chan, Fengjuan Li, Zhenyu Zhu, Maojun Yang, Dapeng Sun
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0196751

Assigning crystallographic electron densities with free energy calculations—The case of the fluoride channel Fluc
Cited by: 2
Author(s): Igor Ariz-Extreme, Jochen S. Hub
Software Mentions: 2
Published: over 6 years ago

10.1007/s13238-015-0163-3

Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 Å resolution
Cited by: 61
Author(s): Shishang Dong, Peng Yang, Guo‐Bang Li, Baocheng Liu, Wenming Wang, Xiang Liu, Xia Bo-ran, Cheng Yang, Zhiyong Lou, Yu Guo, Zihe Rao
Software Mentions: 2
Published: over 9 years ago

10.1155/2012/721869

Crystal Structure of a 9-Subunit Archaeal Exosome in Pre-Catalytic States of the Phosphorolytic Reaction
Cited by: 19
Author(s): Esben Lorentzen, Elena Conti
Software Mentions: 2
Published: almost 13 years ago

10.1007/s13238-015-0205-x

Crystal structures of Bbp from Staphylococcus aureus reveal the ligand binding mechanism with Fibrinogen α
Cited by: 16
Author(s): Xinyue Zhang, Meng Wu, Wei Zhuo, Junping Gu, Sensen Zhang, Jingpeng Ge, Maojun Yang
Software Mentions: 2
Published: about 9 years ago

10.1007/s13238-015-0220-y

TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope
Cited by: 40
Author(s): Shuai Yuan, Lei Cao, Hui Ling, Minghao Dang, Yao Sun, Xuyuan Zhang, Yutao Chen, Liguo Zhang, Dan Su, Xiangxi Wang, Zihe Rao
Software Mentions: 2
Published: about 9 years ago

10.1007/s13238-016-0264-7

Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Cited by: 14
Author(s): Min Xu, Xuan Yang, Xiu‐An Yang, Lei Zhou, Liu Tie-zheng, Zusen Fan, Tao Jiang
Software Mentions: 2
Published: over 8 years ago

10.1107/S1399004715002308

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Cited by: 67
Author(s): A.Y. Lyubimov, Thomas D. Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B. Zeldin, Aina E. Cohen, S. Michael Soltis, E.L. Baxter, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, James M. Berger
Software Mentions: 2
Published: over 9 years ago

10.1007/s13238-016-0328-8

Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy
Cited by: 92
Author(s): Mengqi Lv, Chongyuan Wang, Fudong Li, Junhui Peng, Bin Wen, Qingguo Gong, Yunyu Shi, Yajun Tang
Software Mentions: 2
Published: about 8 years ago

10.1007/s13238-017-0405-7

The binding of a monoclonal antibody to the apical region of SCARB2 blocks EV71 infection
Cited by: 17
Author(s): Xuyuan Zhang, Yang Pan, Nan Wang, Jialong Zhang, Jingyun Li, Hao Guo, Xiangyun Yin, Zihe Rao, Xiangxi Wang, Liguo Zhang
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-017-0426-2

The crystal structure of Ac-AChBP in complex with α-conotoxin LvIA reveals the mechanism of its selectivity towards different nAChR subtypes
Cited by: 20
Author(s): Manyu Xu, Xiaopeng Zhu, Jinfang Yu, Jinpeng Yu, Sulan Luo, Xinquan Wang
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-018-0526-7

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Cited by: 59
Author(s): Danni Zhou, Xing Zhu, Sanduo Zheng, Dan Tan, Meng‐Qiu Dong, Keqiong Ye
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0204703

Structural and biochemical characterization of the Cutibacterium acnes exo-β-1,4-mannosidase that targets the N-glycan core of host glycoproteins
Cited by: 11
Author(s): Tom Reichenbach, Dayanand Kalyani, Rosaria Gandini, Olov Svartström, Henrik Aspeborg, Christina Divne
Software Mentions: 2
Published: about 6 years ago

10.1002/pro.3120

Structural and functional insights into thermally stable cytochrome c′ from a thermophile
Cited by: 14
Author(s): Sotaro Fujii, Hiroya Oki, Kazuki Kawahara, Daisuke Yamane, Masahito Yamanaka, Takahiro Maruno, Yuji Kobayashi, Misa Masanari, Satoshi Wakai, Hirofumi Nishihara, Tadayasu Ohkubo, Yoshihiro Sambongi
Software Mentions: 2
Published: over 7 years ago

10.1002/pro.3879

Structural and chemical trapping of flavin‐oxide intermediates reveals substrate‐directed reaction multiplicity
Cited by: 3
Author(s): Kuan‐Hung Lin, S.Y. Lyu, Hsien‐Wei Yeh, Yi‐Shan Li, Ning‐Shian Hsu, Chun‐Man Huang, Yung‐Lin Wang, Han C. Shih, Zhe‐Chong Wang, Changshan Wu, Tsung‐Lin Li
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2091-12-59

Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins
Cited by: 8
Author(s): Bjorn Vergauwen, Ruben Van der Meeren, Ann Dansercoer, Savvas N. Savvides
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12859-014-0434-7

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions
Cited by: 3
Author(s): Padmaja Natarajan, Marco Punta, Abhinav Kumar, Andrew Yeh, Adam Godzik, L. Aravind
Software Mentions: 2
Published: almost 10 years ago

10.1017/S0033583515000207

Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS
Cited by: 38
Author(s): M. Teplova, Thalia A. Farazi, Thomas Tuschl, Dinshaw J. Patel
Software Mentions: 2
Published: about 9 years ago

10.1039/d0cb00142b

Bypassing the requirement for aminoacyl-tRNA by a cyclodipeptide synthase enzyme
Cited by: 5
Author(s): Christopher John Harding, Emmajay Sutherland, Jane G. Hanna, Douglas R. Houston, Clarissa Melo Czekster
Software Mentions: 2
Published: almost 4 years ago

10.21203/rs.3.rs-40159/v1

Structure of human steroid 5&#x03B1;-reductase 2 with anti-androgen drug finasteride
Cited by: 4
Author(s): Qiuping Xiao, Lei Wang, Shreyas Supekar, Tao Shen, Heng Liu, Fei Ye, Junzhou Huang, Hao Fan, Zhiyi Wei, Cheng Zhang
Software Mentions: 2
Published: over 4 years ago

10.21203/rs.3.rs-625642/v1

Structures of synthetic nanobody–SARS-CoV-2–RBD complexes reveal distinct sites of interaction and recognition of variants
Cited by: 0
Author(s): David H. Margulies, Javeed Ahmad, Jiansheng Jiang, Lisa F. Boyd, Allison Zeher, Rick Huang, Di Xia, Kannan Natarajan
Software Mentions: 2
Published: over 3 years ago

10.1186/s12915-016-0303-0

Structure of the catalytic domain of the colistin resistance enzyme MCR-1
Cited by: 90
Author(s): V. Stojanoski, Banumathi Sankaran, B. V. Venkataram Prasad, Laurent Poirel, Patrice Nordmann, Timothy Palzkill
Software Mentions: 2
Published: about 8 years ago

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