cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1107/S0907444910006694

Introduction to phasing
Cited by: 80
Author(s): G.L. Taylor
Software Mentions: 2
Published: over 16 years ago

The structures ofArabidopsisDeg5 and Deg8 reveal new insights into HtrA proteases
Cited by: 13
Author(s): Wei Sun, Feng Gao, H. Fan, Xiaoyue Shan, Renhua Sun, Lin Liu, Weimin Gong
Software Mentions: 2
Published: over 13 years ago

10.1107/S2059798318018442

The atypical thiol–disulfide exchange protein α-DsbA2 fromWolbachia pipientisis a homotrimeric disulfide isomerase
Cited by: 4
Author(s): Patricia Walden, Andrew E. Whitten, Lakshmanane Premkumar, Maria A. Halili, Begoña Heras, G. J. King, Jennifer L. Martin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0184627

Structure-based design, synthesis and crystallization of 2-arylquinazolines as lipid pocket ligands of p38α MAPK
Cited by: 10
Author(s): Mike Bührmann, Bianca Wiedemann, Matthias Müller, Julia Hardick, Mary Ecke, Daniel Rauh
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0174284

Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW
Cited by: 19
Author(s): Shankar Raj Devkota, Eunju Kwon, Soonhoi Ha, Hyeun Wook Chang, Dong Young Kim
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0140953

Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Cited by: 4
Author(s): Wenjie Wang, Cheng Wang, Ming Luo, Qingyu Yan, Gino Yu, Qiong Li, Dong Cao, Shengfeng Huang, Anlong Xu, Roy A. Mariuzza, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 2
Published: almost 11 years ago

10.3390/cancers12061412

A H-REV107 Peptide Inhibits Tumor Growth and Interacts Directly with Oncogenic KRAS Mutants
Cited by: 10
Author(s): Chang Woo Han, Mi Suk Jeong, Soonhoi Ha, Se Bok Jang
Software Mentions: 2
Published: about 6 years ago

10.1016/j.cell.2013.05.014

OTULIN Antagonizes LUBAC Signaling by Specifically Hydrolyzing Met1-Linked Polyubiquitin
Cited by: 381
Author(s): Kirstin Keusekotten, P.R. Elliott, Laura Glockner, Berthe Katrine Fiil, Rune Busk Damgaard, Yogesh Kulathu, Tobias Wauer, Manuela K. Hospenthal, Mads Gyrd‐Hansen, Daniel Krappmann, Kay Hofmann, David Komander
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0155846

The Crystal Structure of the YknZ Extracellular Domain of ABC Transporter YknWXYZ from Bacillus amyloliquefaciens
Cited by: 9
Author(s): Yongbin Xu, Jianyun Guo, Lulu Wang, Rui Jiang, Xiaoling Jin, Jing Liu, Fan Sheng-di, Chunshan Quan, Nam‐Chul Ha
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0124272

LucY: A Versatile New Fluorescent Reporter Protein
Cited by: 4
Author(s): M.E. Auldridge, Heidi B. Cao, Satyabrata Sen, Laura Franz, C.A. Bingman, Ragothaman M. Yennamalli, George N. Phillips, David A. Mead, Eric J. Steinmetz
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0064901

Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold
Cited by: 33
Author(s): A. Goepfert, Frédéric V. Stanger, Christoph Dehio, Tilman Schirmer
Software Mentions: 2
Published: about 13 years ago

10.1074/jbc.M117.802587

Phosphorylation of human enhancer filamentation 1 (HEF1) stimulates interaction with Polo-like kinase 1 leading to HEF1 localization to focal adhesions
Cited by: 6
Author(s): Kyung Ho Lee, Jeong Ah Hwang, Sun Ok Kim, Jung Hee Kim, Sang Chul Shin, Eunice Eun Kyeong Kim, Kyung S. Lee, Kunsoo Rhee, Byeong Hwa Jeon, Jeong Kyu Bang, Hyunjoo Cha-Molstad, Nak-Kyun Soung, Jae Hyuk Jang, Sung-Kyun Ko, Hee Gu Lee, Jong Seog Ahn, Yongtae Kwon, Bo Yeon Kim
Software Mentions: 2
Published: over 8 years ago

10.1186/s12866-015-0365-0

Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae
Cited by: 33
Author(s): Stephan Endres, Joachim Granzin, Franco Circolone, Andreas M. Stadler, Ulrich Krauß, Thomas Drepper, Vera Svensson, Esther Knieps-Grünhagen, Astrid Wirtz, Anneliese Cousin, Petra Tielen, Dieter Willbold, Karl‐Erich Jaeger, Renu Batra‐Safferling
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.RA117.000119

Structural analysis of group II chitinase (ChtII) catalysis completes the puzzle of chitin hydrolysis in insects
Cited by: 45
Author(s): Wei Chen, Mingli Qu, Yong Zhou, Qing Yang
Software Mentions: 2
Published: over 8 years ago

10.1107/S2053230X1402425X

The structure of the cyanobactin domain of unknown function from PatG in the patellamide gene cluster
Cited by: 15
Author(s): Greg Mann, Jesko Koehnke, Andrew F. Bent, R. Scott Graham, Wael E. Houssen, Marcel Jaspars, Ulrich Schwarz‐Linek, James H. Naismith
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0074788

The Structural Basis of Erwinia rhapontici Isomaltulose Synthase
Cited by: 17
Author(s): Zheng Xu, Sha Li, Jie Li, Yan Li, Xiaohai Feng, Renxiao Wang, Hong Xu, Jiahai Zhou
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0063370

Structural Basis for the Oligomerization-State Switch from a Dimer to a Trimer of an Engineered Cortexillin-1 Coiled-Coil Variant
Cited by: 2
Author(s): Saša Bjelić, Mara M. Wieser, Daniel Frey, Christian U. Stirnimann, Mark R. Chance, Rolf Jaussi, Michel O. Steinmetz, Richard A. Kammerer
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0091232

Molecular Recognition of the Neurotransmitter Acetylcholine by an Acetylcholine Binding Protein Reveals Determinants of Binding to Nicotinic Acetylcholine Receptors
Cited by: 34
Author(s): Jeppe Olsen, Thomas Balle, Michael Gajhede, Philip K. Ahring, J.S. Kastrup
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pbio.3000277

Structural insights into histone chaperone Chz1-mediated H2A.Z recognition and histone replacement
Cited by: 17
Author(s): Yunyun Wang, Sheng Liu, Lu Sun, Ning Xu, Shan Shan, Fei Wu, Xiaoping Liang, Yingzi Huang, Ed Luk, Carl Wu, Zheng Zhou
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0020950

Conformational Changes of rBTI from Buckwheat upon Binding to Trypsin: Implications for the Role of the P8′ Residue in the Potato Inhibitor I Family
Cited by: 13
Author(s): Long Wang, Fei Zhao, Mei Li, Hongmei Zhang, Yu Gao, Peng Cao, Xiaowei Pan, Zhuanhua Wang, Wenrui Chang
Software Mentions: 2
Published: about 15 years ago

10.1107/S2059798315010268

Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23Nterm
Cited by: 9
Author(s): Michele Cianci, Matthew R. Groves, David Barford, Thomas R. Schneider
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0224689

Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms
Cited by: 2
Author(s): Myeong Yeon Lee, Jun Young Lee, Hyun Kyu Joo, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0062021

Structure of the Non-Catalytic Domain of the Protein Disulfide Isomerase-Related Protein (PDIR) Reveals Function in Protein Binding
Cited by: 20
Author(s): R. Vinaik, Guennadi Kozlov, Kalle Gehring
Software Mentions: 2
Published: over 13 years ago

10.1107/S1399004714005227

Structure of the unique SEFIR domain from human interleukin 17 receptor A reveals a composite ligand-binding site containing a conserved α-helix for Act1 binding and IL-17 signaling
Cited by: 29
Author(s): Bing Zhang, Caini Liu, Qian Wen, Yue Han, Xiaoxia Li, Junpeng Deng
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.RA120.014924

Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance
Cited by: 8
Author(s): Jūrate ̇ Fahrig-Kamarauskait≑, Kathrin Würth-Roderer, Helen V. Thorbjørnsrud, Susanne Mailand, Ute Krengel, Peter Kast
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.016295

Antibiotic binding releases autoinhibition of the TipA multidrug-resistance transcriptional regulator
Cited by: 2
Author(s): Xuping Jiang, Linjuan Zhang, Maikun Teng, Li Xu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0062252

Crystal Structures of a Plant Trypsin Inhibitor from Enterolobium contortisiliquum (EcTI) and of Its Complex with Bovine Trypsin
Cited by: 30
Author(s): Dongwen Zhou, Yara Aparecida Lobo, Isabel de Fátima Correia Batista, Rafael Marques-Porto, Alla Gustchina, Maria Luíza Vilela Oliva, Alexander Wlodawer
Software Mentions: 2
Published: over 13 years ago

10.1186/s12900-015-0030-8

Crystal structure and biophysical characterization of the nucleoside diphosphate kinase from Leishmania braziliensis
Cited by: 6
Author(s): P.S. Vieira, P.O. Giuseppe, Mário Tyago Murakami, Arthur Henrique Cavalcante de Oliveira
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0040066

The Crystal Structures of Dystrophin and Utrophin Spectrin Repeats: Implications for Domain Boundaries
Cited by: 27
Author(s): M. Muthu, Kylie A. Richardson, Andrew J. Sutherland-Smith
Software Mentions: 2
Published: about 14 years ago

10.1186/1472-6807-12-32

Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme’s active site closure
Cited by: 22
Author(s): Jaeok Park, Yih‐Shyan Lin, Joris W. De Schutter, Youla S. Tsantrizos, Albert M. Berghuis
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0071835

Functional Mapping of Human Dynamin-1-Like GTPase Domain Based on X-ray Structure Analyses
Cited by: 60
Author(s): Julia Wenger, Eva Klinglmayr, Chris Fröhlich, Clarissa Eibl, Ana Gimeno, Manuel Hessenberger, Sandra Puehringer, Oliver Daumke, Peter Goettig
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0034918

Insights into the Mechanism of Bovine CD38/NAD+Glycohydrolase from the X-Ray Structures of Its Michaelis Complex and Covalently-Trapped Intermediates
Cited by: 20
Author(s): Pascal F. Egea, Hélène Muller-Steffner, Isabelle Kuhn, Céline Cakir-Kiefer, Norman J. Oppenheimer, Robert M. Stroud, Esther Kellenberger, Francis Schuber
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0241912

Molecular analysis of cyclic α-maltosyl-(1→6)-maltose binding protein in the bacterial metabolic pathway
Cited by: 2
Author(s): Masanori Kohno, T. Arakawa, Naoki Sunagawa, Tetsuya Mori, Kiyohiko Igarashi, Tetsuya Nishimoto, Shinya Fushinobu
Software Mentions: 2
Published: over 5 years ago

10.1186/1472-6807-14-3

Crystal structures of the human Dysferlin inner DysF domain
Cited by: 25
Author(s): Altin Sula, A.R. Cole, Corin Yeats, Christine A. Orengo, Nicholas H. Keep
Software Mentions: 2
Published: over 12 years ago

10.1016/j.cell.2018.10.037

Structures of DPAGT1 Explain Glycosylation Disease Mechanisms and Advance TB Antibiotic Design
Cited by: 52
Author(s): Yin Dong, Hua Wang, A.C.W. Pike, Stephen A. Cochrane, Sadra Hamedzadeh, Filip J. Wyszyński, S.R. Bushell, Sylvain Royer, David A. Widdick, Andaleeb Sajid, Helena I. Boshoff, Yumi Park, Ricardo Dantas de Lucas, Weimin Liu, Seung Seo Lee, Takuya Machida, Leanne Minall, Shahid Mehmood, Katsiaryna Belaya, Weiwei Liu, Amy Chu, L. Shrestha, Shubhashish M.M. Mukhopadhyay, Claire Strain-Damerell, R. Chalk, N. Burgess-Brown, Mervyn J. Bibb, Clifton E. Barry, Carol V. Robinson, David Beeson, Benjamin G. Davis, E.P. Carpenter
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.jbc.2021.100713

The mycobacterial proteasomal ATPase Mpa forms a gapped ring to engage the 20S proteasome
Cited by: 3
Author(s): Yuanyuan Yin, Amanda Kovach, Hao-Chi Hsu, K. Heran Darwin, Huilin Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s12900-015-0037-1

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase
Cited by: 8
Author(s): Norbert Schormann, Surajit Banerjee, Robert P. Ricciardi, Debasish Chattopadhyay
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pbio.1001776

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
Cited by: 97
Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: over 12 years ago

10.1107/S0907444913018167

Improving experimental phases for strong reflections prior to density modification
Cited by: 7
Author(s): Monarin Uervirojnangkoorn, Rolf Hilgenfeld, Thomas C. Terwilliger, Randy J. Read
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0089027

Distinct Structural Features of the Peroxide Response Regulator from Group A Streptococcus Drive DNA Binding
Cited by: 13
Author(s): Chang Hong Lin, Shi-Yu Chao, Michal Hammel, Jay C. Nix, Hsiao-Ling Tseng, Chih-Cheng Tsou, Chun-Hsien Fei, Huo-Sheng Chiou, U‐Ser Jeng, Yee‐Shin Lin, Woei‐Jer Chuang, Jiunn-Jong Wu, Shuying Wang
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0121764

Stability of the Octameric Structure Affects Plasminogen-Binding Capacity of Streptococcal Enolase
Cited by: 13
Author(s): Amanda J. Cork, Daniel Ericsson, Ruby H. P. Law, Lachlan W. Casey, Eugene Valkov, Carlo Bertozzi, Anna Stamp, Blagojce Jovcevski, J. Andrew Aquilina, James C. Whisstock, Mark J. Walker, Boštjan Kobe
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0034263

A Glutathione Transferase from Agrobacterium tumefaciens Reveals a Novel Class of Bacterial GST Superfamily
Cited by: 25
Author(s): Katholiki Skopelitou, Prathusha Dhavala, Anastassios C. Papageorgiou, Nikolaos E. Labrou
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0050097

Structure of the Human Discs Large 1 PDZ2– Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering
Cited by: 8
Author(s): Kevin C. Slep
Software Mentions: 2
Published: over 13 years ago

10.1186/1472-6807-7-45

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Cited by: 35
Author(s): Norbert Schormann, Alexei Grigorian, Alexandra B. Samal, Krishnan Raman, Lawrence J. DeLucas, Debasish Chattopadhyay
Software Mentions: 2
Published: about 19 years ago

10.1107/S2059798317003400

Estimation of the protein–ligand interaction energy for model building and validation
Cited by: 10
Author(s): Daria A. Beshnova, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0191610

Crystal structure of a UDP-GlcNAc epimerase for surface polysaccharide biosynthesis in Acinetobacter baumannii
Cited by: 1
Author(s): Bhumika S. Shah, Heather E. Ashwood, S.J. Harrop, Daniel N. Farrugia, Ian T. Paulsen, Bridget C. Mabbutt
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0178752

Structural basis for 5'-ETS recognition by Utp4 at the early stages of ribosome biogenesis
Cited by: 3
Author(s): Fabiola R. Calviño, Markus Kornprobst, Géza Schermann, Fabienne Birkle, Klemens Wild, Tamás Fischer, Ed Hurt, Yasar Luqman Ahmed, Irmgard Sinning
Software Mentions: 2
Published: about 9 years ago

10.1107/S2053230X14017087

Structure ofToxoplasma gondiifructose-1,6-bisphosphate aldolase
Cited by: 8
Author(s): Lauren Boucher, Jürgen Bosch
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0090915

Crystal Structures of the Novel Cytosolic 5′-Nucleotidase IIIB Explain Its Preference for m7GMP
Cited by: 13
Author(s): Thomas Monecke, Juliane Buschmann, Piotr Neumann, Elmar Wahle, Ralf Ficner
Software Mentions: 2
Published: over 12 years ago

10.1186/s12900-014-0024-y

Structural insights into Escherichia coli polymyxin B resistance protein D with X-ray crystallography and small-angle X-ray scattering
Cited by: 9
Author(s): Hang-Hyun Jo, Eui Young Jeong, Jinseong Jeon, Changill Ban
Software Mentions: 2
Published: over 11 years ago

10.1107/S0907444912024420

Experimental phasing using zinc anomalous scattering
Cited by: 22
Author(s): Sun Mi Shin, Young Jun An, Chang-Sung Jeong, Min Kyu Kim, Sung Gyu Lee, Kwang Hoon Lee, Byung Ha Oh
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.ppat.1000723

Structure of the HCMV UL16-MICB Complex Elucidates Select Binding of a Viral Immunoevasin to Diverse NKG2D Ligands
Cited by: 47
Author(s): Susanne Müller, Georg Zocher, Alexander Steinle, Thilo Stehle
Software Mentions: 2
Published: over 16 years ago

10.1186/1472-6807-14-17

Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
Cited by: 36
Author(s): Catherine Leettola, Mary Jane Knight, Duilio Cascio, Sigrid Hoffman, James U. Bowie
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0210842

Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif
Cited by: 7
Author(s): Xingchen Chen, Blake T. Riley, Simon J. de Veer, David E. Hoke, Jessica Van Haeften, Darren Leahy, Joakim E. Swedberg, Maria Brattsand, Perry J. Hartfield, Ashley M. Buckle, Jonathan M. Harris
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0097015

Structural Studies of an Anti-Inflammatory Lectin from Canavalia boliviana Seeds in Complex with Dimannosides
Cited by: 22
Author(s): G.A. Bezerra, Roland Viertlmayr, Tales Rocha de Moura, P. Delatorre, B.A.M. Rocha, Kyria S. Nascimento, Jozi Godoy Figueiredo, Ingrid Gonçalves Bezerra, C.S. Teixeira, Rafael Conceição Simões, Celso Shiniti Nagano, Nylane Maria Nunes de Alencar, Karl Gruber, Benildo S. Cavada
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0177161

Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation
Cited by: 31
Author(s): Erika Pellegrini, Luca Signor, Saurabh Singh, Elisabetta Boeri Erba, Stephen Cusack
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0020864

Identification of the Allosteric Regulatory Site of Insulysin
Cited by: 36
Author(s): Nicholas Noinaj, Sonia K. Bhasin, Eun Suk Song, Kirsten E. Scoggin, María A. Juliano, Luiz Juliano, Louis B. Hersh, David W. Rodgers
Software Mentions: 2
Published: about 15 years ago

10.1107/S2053230X15024565

Structure of the human histone chaperone FACT Spt16 N-terminal domain
Cited by: 14
Author(s): Gabriele Marcianò, Danny T. Huang
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0052066

Structural and Functional Insights into (S)-Ureidoglycolate Dehydrogenase, a Metabolic Branch Point Enzyme in Nitrogen Utilization
Cited by: 4
Author(s): Myungil Kim, Inchul Shin, Suhee Cho, Jee Hyun Lee, Sangkee Rhee
Software Mentions: 2
Published: over 13 years ago

10.1107/S1399004714006439

Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28
Cited by: 17
Author(s): Sina Möhlmann, Rebecca Mathew, Piotr Neumann, Andreas Schmitt, Reinhard Lührmann, Ralf Ficner
Software Mentions: 2
Published: about 12 years ago

10.1186/1472-6807-12-7

Crystal structure of a new benzoic acid inhibitor of influenza neuraminidase bound with a new tilt induced by overpacking subsite C6
Cited by: 10
Author(s): Lalitha Venkatramani, Eric S. Johnson, Gundurao Kolavi, Gillian M. Air, Wayne J. Brouillette, Blaine H. M. Mooers
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.ppat.1003624

The Crystal Structure and RNA-Binding of an Orthomyxovirus Nucleoprotein
Cited by: 36
Author(s): Wei Zheng, John S. Olson, Vikram N. Vakharia, Yizhi Jane Tao
Software Mentions: 2
Published: almost 13 years ago

10.1107/S2059798317006349

Crystal structure ofYersinia pestisvirulence factor YfeA reveals two polyspecific metal-binding sites
Cited by: 14
Author(s): C.D. Radka, Lawrence J. DeLucas, Landon Wilson, Matthew B. Lawrenz, Robert D. Perry, Stephen G. Aller
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0022337

The Crystal Structure of the Human Co-Chaperone P58IPK
Cited by: 19
Author(s): Maria Svärd, Ekaterina Biterova, Jean-Marie Bourhis, Jodie E. Guy
Software Mentions: 2
Published: about 15 years ago

10.1186/1472-6807-13-30

Crystal structure of the γ-hydroxymuconic semialdehyde dehydrogenase from Pseudomonas sp. strainWBC-3, a key enzyme involved in para-Nitrophenol degradation
Cited by: 3
Author(s): Jing Su, Cong Zhang, Junjie Zhang, Tian‐Ran Wei, Deyu Zhu, Ning‐Yi Zhou, Lin Gu
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.ppat.1004334

P. aeruginosa SGNH Hydrolase-Like Proteins AlgJ and AlgX Have Similar Topology but Separate and Distinct Roles in Alginate Acetylation
Cited by: 52
Author(s): Perrin Baker, Tyler Ricer, Patrick J. Moynihan, Elena N. Kitova, Marthe T. C. Walvoort, Dustin J. Little, John C. Whitney, Karen Dawson, Joel T. Weadge, Howard Robinson, Dennis E. Ohman, Jeroen D. C. Codée, John S. Klassen, Anthony J. Clarke, P. Lynne Howell
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0048742

New Insights into the Hendra Virus Attachment and Entry Process from Structures of the Virus G Glycoprotein and Its Complex with Ephrin-B2
Cited by: 30
Author(s): Kai Xu, Yee-Peng Chan, Kanagalaghatta R. Rajashankar, Dimple Khetawat, Lianying Yan, Momchil V. Kolev, Christopher C. Broder, Dimitar B. Nikolov
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0140984

Improving the pH-stability of Versatile Peroxidase by Comparative Structural Analysis with a Naturally-Stable Manganese Peroxidase
Cited by: 40
Author(s): Verónica Sáez-Jiménez, Elena Fernández‐Fueyo, F.J. Medrano, Antonio Romero, Ángel T. Martínez, Francisco J. Ruíz-Dueñas
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0066247

CD38 Structure-Based Inhibitor Design Using the N1-Cyclic Inosine 5′-Diphosphate Ribose Template
Cited by: 24
Author(s): Christelle Moreau, Qun Liu, Richard Graeff, Gerd K. Wagner, Mark Thomas, Joanna M. Swarbrick, Satoshi Shuto, Hon Cheung Lee, Quan Hao, Barry V. L. Potter
Software Mentions: 2
Published: about 13 years ago

10.1042/BCJ20160806

Neisseria meningitidis factor H-binding protein bound to monoclonal antibody JAR5: implications for antibody synergy
Cited by: 18
Author(s): E. Malito, Paola Lo Surdo, Daniele Veggi, Laura Santini, Heather Stefek, Brunella Brunelli, Enrico Luzzi, Matthew J. Bottomley, Peter T. Beernink, María Scarselli
Software Mentions: 2
Published: over 9 years ago

10.1063/1.5023460

Non-steric-zipper models for pathogenic α-synuclein conformers
Cited by: 0
Author(s): Brock Schuman, Amy Won, Koroboshka Brand-Arzamendi, James B. Koprich, Xiao‐Yan Wen, Patrick A. Howson, Jonathan M. Brotchie, Christopher M. Yip
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0064426

Crystal Structure of Crataeva tapia Bark Protein (CrataBL) and Its Effect in Human Prostate Cancer Cell Lines
Cited by: 19
Author(s): Rodrigo S. Ferreira, Dongwen Zhou, Joana Gasperazzo Ferreira, Mariana Cristina Cabral Silva, Rosemeire A. Silva-Lucca, Reinhard Mentele, Edgar Julian Paredes‐Gamero, Thiago Carlos Bertolin, Maria Tereza dos Santos Correia, Patrícia Maria Guedes Paiva, Alla Gustchina, Alexander Wlodawer, Maria Luíza Vilela Oliva
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0122512

Crystal Structure of a Two-Subunit TrkA Octameric Gating Ring Assembly
Cited by: 2
Author(s): Marc C. Deller, Hope A. Johnson, Mitchell D. Miller, Glen Spraggon, Marc‐André Elsliger, Ian A. Wilson, Scott A. Lesley
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0092249

Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Cited by: 20
Author(s): Keisuke Sugimoto, Masuo Senda, Daisuke Kasai, Masao Fukuda, Eiji Masai, Toshiya Senda
Software Mentions: 2
Published: over 12 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP+
Cited by: 16
Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0206709

The three dimensional structure of Bovine Salivary Protein 30b (BSP30b) and its interaction with specific rumen bacteria
Cited by: 1
Author(s): Heng Zhang, Judith Burrows, G.L. Card, Graeme T. Attwood, Tom T. Wheeler, Vickery L. Arcus
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0032336

Myelin 2′,3′-Cyclic Nucleotide 3′-Phosphodiesterase: Active-Site Ligand Binding and Molecular Conformation
Cited by: 31
Author(s): Matti Myllykoski, Arne Raasakka, Huijong Han, Petri Kursula
Software Mentions: 2
Published: over 14 years ago

10.1107/S0907444911014302

Structure-based design of a disulfide-linked oligomeric form of the simian virus 40 (SV40) large T antigen DNA-binding domain
Cited by: 7
Author(s): Gretchen Meinke, Paul J. Phelan, Amélie Fradet-Turcotte, Jacques Archambault, Peter A. Bullock
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0239702

SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique
Cited by: 7
Author(s): Timothy R. Stachowski, M. Elizabeth Snell, Edward H. Snell
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2059798318017047

The crystal structure of theN-acetylglucosamine 2-epimerase fromNostocsp. KVJ10 reveals the true dimer
Cited by: 5
Author(s): Marie Josée Haglund Halsør, U. Rothweiler, Bjørn Altermark, Inger Lin Uttakleiv Ræder
Software Mentions: 2
Published: over 7 years ago

10.1107/S1399004715018519

Sent packing: protein engineering generates a new crystal form ofPseudomonas aeruginosaDsbA1 with increased catalytic surface accessibility
Cited by: 5
Author(s): Róisín M. McMahon, M. Coincon, Stephanie Tay, Begoña Heras, Craig J. Morton, M.J. Scanlon, Jennifer L. Martin
Software Mentions: 2
Published: over 10 years ago

10.1038/srep33905

Structural and histone binding ability characterization of the ARB2 domain of a histone deacetylase Hda1 from Saccharomyces cerevisiae
Cited by: 7
Author(s): Hui Shen, Yuwei Zhu, Chongyuan Wang, Hui Yan, Maikun Teng, Li Xu
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0154190

X-Ray Crystal Structure of the Full Length Human Chitotriosidase (CHIT1) Reveals Features of Its Chitin Binding Domain
Cited by: 32
Author(s): Firas Fadel, Yuguang Zhao, A. Cousido-Siah, Francesc Xavier Ruiz, A. Mitschler, A. Podjarny
Software Mentions: 2
Published: over 10 years ago

10.1107/S1399004714013455

Interaction of serum amyloid P component with hexanoyl bis(<scp>D</scp>-proline) (CPHPC)
Cited by: 10
Author(s): Simon Kolstoe, Michelle C. Jenvey, Alan Purvis, Mark E. Light, Darren A. Thompson, P.I. Hughes, Mark B. Pepys, Stephen P. Wood
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0200387

Discovery of fragments that target key interactions in the signal recognition particle (SRP) as potential leads for a new class of antibiotics
Cited by: 8
Author(s): Camilla Faoro, Lorna Wilkinson-White, Ann H. Kwan, Sandro F. Ataide
Software Mentions: 2
Published: about 8 years ago

10.1042/BCJ20180867

Solution structures and biophysical analysis of full-length group A PAKs reveal they are monomeric and auto-inhibited in cis
Cited by: 10
Author(s): F.J. Sorrell, Lena Marie Kilian, J.M. Elkins
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0107000

Crystal Structure of the Mineralocorticoid Receptor DNA Binding Domain in Complex with DNA
Cited by: 39
Author(s): William Henry Hudson, Christine Youn, Eric A. Ortlund
Software Mentions: 2
Published: almost 12 years ago

10.1107/S2053230X18009901

MBP-binding DARPins facilitate the crystallization of an MBP fusion protein
Cited by: 4
Author(s): R. Gumpena, G.T. Lountos, David S. Waugh
Software Mentions: 2
Published: almost 8 years ago

10.1042/BCJ20160791

Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain
Cited by: 39
Author(s): Ni Tien, Antreas C. Kalli, Fiona B. Naughton, Luke A. Yates, Omar Naneh, Mirijam Kozorog, Gregor Anderluh, Mark S. P. Sansom, Robert J.C. Gilbert
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0006820

The Crystal Structure of the Escherichia coli Autoinducer-2 Processing Protein LsrF
Cited by: 17
Author(s): Zamia Diaz, Karina B. Xavier, Stephen T. Miller
Software Mentions: 2
Published: almost 17 years ago

10.1107/S1399004715017927

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines
Cited by: 104
Author(s): U. Zander, Gleb Bourenkov, А. Н. Попов, Daniele de Sanctis, Olof Svensson, A.A. McCarthy, Ekaterina Round, Valentin Gordeliy, Christoph Mueller-Dieckmann, Gordon A. Leonard
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0196642

Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: over 8 years ago

10.1021/acs.biochem.1c00258

Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag
Cited by: 62
Author(s): Jonas Wilhelm, Stefanie F. Kühn, Mirosław Tarnawski, Guillaume Gotthard, Jana Tünnermann, Timo Tänzer, Iuliia A. Karpenko, Nicole Mertes, Lin Xue, Ulrike Uhrig, Jochen Reinstein, Julien Hiblot, Kai Johnsson
Software Mentions: 2
Published: about 5 years ago

10.1038/srep08560

The catalytic role of the M2 metal ion in PP2Cα
Cited by: 16
Author(s): Chang Pan, Junyi Tang, Yaping Xu, Xiao Peng, Hongda Liu, Hao-an Wang, Wenbo Wang, Fanyue Meng, Xiao Yu, Junying Sun
Software Mentions: 2
Published: over 11 years ago

10.1107/S2053230X15008766

Structural characterization of the principal mRNA-export factor Mex67–Mtr2 fromChaetomium thermophilum
Cited by: 8
Author(s): Shintaro Aibara, Eugene Valkov, Meindert H. Lamers, Lyudmila Dimitrova, Ed Hurt, Murray Stewart
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pbio.1001226

Structural Basis of Response Regulator Inhibition by a Bacterial Anti-Activator Protein
Cited by: 52
Author(s): Melinda D. Baker, Matthew B. Neiditch
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0020420

VPS29 Is Not an Active Metallo-Phosphatase but Is a Rigid Scaffold Required for Retromer Interaction with Accessory Proteins
Cited by: 52
Author(s): James Swarbrick, Daniel Shaw, Sandeep Chhabra, Rajesh Ghai, Eugene Valkov, Suzanne J. Norwood, Matthew N. Seaman, Brett M. Collins
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0036526

Structural Analyses of the Slm1-PH Domain Demonstrate Ligand Binding in the Non-Canonical Site
Cited by: 21
Author(s): K. Anand, Kenji Maeda, Anne‐Claude Gavin
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0024227

Get Phases from Arsenic Anomalous Scattering: de novo SAD Phasing of Two Protein Structures Crystallized in Cacodylate Buffer
Cited by: 22
Author(s): Xiang Liu, Heng Zhang, Wang Xiao-jun, Lanfen Li, Xiao‐Dong Su
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0043019

Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases
Cited by: 23
Author(s): G.A. Bezerra, E. Dobrovetsky, Aiping Dong, Almagul Seitova, Lissete Crombett, Lisa M. Shewchuk, Annie M. Hassell, Sharon Sweitzer, Thomas D. Sweitzer, Patrick McDevitt, Kyung Johanson, Karen M. Kennedy-Wilson, D. Cossar, A. Bochkarev, Karl Gruber, Sirano Dhe‐Paganon
Software Mentions: 2
Published: almost 14 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287