cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1016/j.jmb.2013.05.024

Characterization of 14-3-3-ζ Interactions with Integrin Tails
Cited by: 29
Author(s): Roman Bonet, Ioannis Vakonakis, Iain D. Campbell
Software Mentions: 2
Published: about 13 years ago

Crystal Structure of the VapBC Toxin–Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly
Cited by: 70
Author(s): Christian Dienemann, Andreas Bøggild, Kristoffer Skovbo Winther, Kenn Gerdes, D.E. Brodersen
Software Mentions: 2
Published: almost 15 years ago

10.1016/j.jmb.2015.07.014

Structures of the Ultra-High-Affinity Protein–Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa
Cited by: 25
Author(s): Amar Joshi, Rhys Grinter, Inokentijs Josts, Sabrina Chen, Justyna Aleksandra Wojdyla, E.D. Lowe, Renata Kaminska, Connor Sharp, Laura C. McCaughey, A.W. Roszak, Richard J. Cogdell, Olwyn Byron, Daniel Walker, Colin Kleanthous
Software Mentions: 2
Published: about 11 years ago

10.1016/j.jmb.2019.10.005

Paratope Duality and Gullying are Among the Atypical Recognition Mechanisms Used by a Trio of Nanobodies to Differentiate Ebolavirus Nucleoproteins
Cited by: 4
Author(s): Laura J. Sherwood, Alexander B. Taylor, P. John Hart, Andrew Hayhurst
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jmb.2010.01.035

Structural Basis of Substrate Binding in WsaF, a Rhamnosyltransferase from Geobacillus stearothermophilus
Cited by: 22
Author(s): Kerstin Steiner, Gregor Hagelueken, Paul Messner, Christina Schäffer, James H. Naismith
Software Mentions: 2
Published: over 16 years ago

10.1016/j.jmb.2015.01.012

Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme
Cited by: 21
Author(s): Wenyuan Liang, Min Ren, Fan Zhao, Wei-Jen Tang
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jmb.2011.03.047

Interaction of the p53 DNA-Binding Domain with Its N-Terminal Extension Modulates the Stability of the p53 Tetramer
Cited by: 79
Author(s): Eviatar Natan, Çetin Baloğlu, Kevin Pagel, Stefan Freund, Nina Morgner, Carol V. Robinson, Alan R. Fersht, A.C. Joerger
Software Mentions: 2
Published: over 15 years ago

10.1016/j.jmb.2009.07.026

Crystal Structures of Wzb of Escherichia coli and CpsB of Streptococcus pneumoniae, Representatives of Two Families of Tyrosine Phosphatases that Regulate Capsule Assembly
Cited by: 69
Author(s): Gregor Hagelueken, Hexian Huang, Iain L. Mainprize, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: about 17 years ago

10.1016/j.jmb.2018.02.010

Structural and Mechanistic Analysis of the Choline Sulfatase from Sinorhizobium melliloti: A Class I Sulfatase Specific for an Alkyl Sulfate Ester
Cited by: 16
Author(s): Bert van Loo, Markus Schöber, Eugene Valkov, Magdalena Heberlein, Erich Bornberg‐Bauer, Kurt Faber, Marko Hyvönen, Florian Hollfelder
Software Mentions: 2
Published: over 8 years ago

10.1016/j.jmb.2008.01.072

Structures of the Shigella flexneri Type 3 Secretion System Protein MxiC Reveal Conformational Variability Amongst Homologues
Cited by: 33
Author(s): Janet E. Deane, Pietro Roversi, Carole King, Steven Johnson, Susan M. Lea
Software Mentions: 2
Published: over 18 years ago

10.7554/eLife.48496

Electron cryo-microscopy of bacteriophage PR772 reveals the elusive vertex complex and the capsid architecture
Cited by: 5
Author(s): Hemanth K. N. Reddy, Marta Carroni, János Hajdu, Martin Svenda
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.06547

ULK3 regulates cytokinetic abscission by phosphorylating ESCRT-III proteins
Cited by: 78
Author(s): Anna Caballe, Dawn M Wenzel, Monica Agromayor, Steven L. Alam, Jack J. Skalicky, Magdalena Kloc, Jeremy G. Carlton, Leticia Labrador, Wesley I. Sundquist, Juan Martín-Serrano
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.07574

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography
Cited by: 140
Author(s): D.A. Keedy, Lukas Kenner, Matthew Warkentin, R.A. Woldeyes, Jesse B. Hopkins, Michael C. Thompson, Aaron S. Brewster, A.H. Van Benschoten, E.L. Baxter, Monarin Uervirojnangkoorn, S.E. McPhillips, Jianguo Song, Roberto Alonso-Mori, James M. Holton, William I. Weis, Axel T. Brunger, S. Michael Soltis, Henrik T. Lemke, Ana González, Nicholas K. Sauter, Aina E. Cohen, Henry van den Bedem, Robert Thorne, James S. Fraser
Software Mentions: 2
Published: almost 11 years ago

10.7554/eLife.49572

Structure-based characterization of novel TRPV5 inhibitors
Cited by: 36
Author(s): Taylor Hughes, John Smith Del Rosario, Anoop Kapoor, Aysenur Yazici, Yevgen Yudin, Edwin C. Fluck, Marta Filizola, Tibor Rohács, Vera Y. Moiseenkova-Bell
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.31502

3.3-Å resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound
Cited by: 34
Author(s): Edward J. Brignole, Kuang‐Lei Tsai, Johnathan Chittuluru, Haoran Li, Yimon Aye, Pawel A. Penczek, Jo Anne Stubbe, Catherine L. Drennan, Francisco J. Asturias
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.65903

The crystal structure of bromide-bound GtACR1 reveals a pre-activated state in the transmembrane anion tunnel
Cited by: 10
Author(s): Hai Li, Chia‐Ying Huang, Elena G. Govorunova, Oleg A. Sineshchekov, Adrian Yi, Kenneth J. Rothschild, Meitian Wang, Lei Zheng, John L. Spudich
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.26693

MELK is not necessary for the proliferation of basal-like breast cancer cells
Cited by: 74
Author(s): Hai‐Tsang Huang, Hyuk‐Soo Seo, Tinghu Zhang, Yubao Wang, Baishan Jiang, Qing Li, Dennis L. Buckley, Behnam Nabet, Justin M. Roberts, Joshiawa Paulk, Shiva Dastjerdi, Alessio Ciulli, Hilary McLauchlan, Jennifer L. Moran, James E. Bradner, Michael J. Eck, Sirano Dhe‐Paganon, Jean J. Zhao, Nathanael S. Gray
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.56451

Characterization of the kinetic cycle of an ABC transporter by single-molecule and cryo-EM analyses
Cited by: 47
Author(s): Ling Wang, Z.L. Johnson, Mark Wasserman, Jesper Levring, Jue Chen, Shixin Liu
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.21600

Crenactin forms actin-like double helical filaments regulated by arcadin-2
Cited by: 31
Author(s): Thierry Izoré, Danguole Kureisaite-Ciziene, Stephen H. McLaughlin, Jan Löwe
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.02217

Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers
Cited by: 62
Author(s): Jonathan M. Scholey, Stanley Nithianantham, Jonathan M. Scholey, Jawdat Al-Bassam
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.41028

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila
Cited by: 31
Author(s): Sibo Cheng, James A. Ashley, J.D. Kurleto, Meike Lobb-Rabe, Yeonhee Jenny Park, Robert A. Carrillo, Engin Özkan
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.02057

Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network
Cited by: 111
Author(s): Jerome C. Nwachukwu, Sathish Srinivasan, Nelson E. Bruno, A.A. Parent, Travis S. Hughes, Julie A. Pollock, Olsi Gjyshi, V. Cavett, J. Nowak, Rubén D. Garcia-Ordoñez, René Houtman, Patrick R. Griffin, D.J. Kojetin, John A. Katzenellenbogen, Michael D. Conkright, K.W. Nettles
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.03604

Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters
Cited by: 49
Author(s): Z.L. Johnson, Jun-Ho Lee, Kiyoun Lee, Minhee Lee, Deok-Ho Kwon, Jiyong Hong, Seok‐Yong Lee
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.36340

Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors
Cited by: 53
Author(s): Yang Yang, Dongwei Kang, Laura A. Nguyen, Z.B. Smithline, Christophe Pannecouque, Peng Zhan, Xinyong Liu, Thomas A. Steitz
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.00184

Distinct gating mechanisms revealed by the structures of a multi-ligand gated K+ channel
Cited by: 22
Author(s): Chunguang Kong, Weizhong Zeng, Sheng Ye, Liping Chen, David Sauer, Y. Amy Lam, M.G. Derebe, Youxing Jiang
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.06792

Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence
Cited by: 26
Author(s): Kevin G. Hicks, Scott P. Delbecq, Enea Sancho‐Vaello, Marie-Pierre Blanc, Katja K. Dove, Lynne R. Prost, Margaret E. Daley, Kornelius Zeth, Rachel E. Klevit, Samuel I. Miller
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.00482

Mechanism for priming DNA synthesis by yeast DNA Polymerase α
Cited by: 89
Author(s): Rajika L. Perera, Rubben Torella, Sebastian Klinge, M.L. Kilkenny, Joseph D. Maman, Luca Pellegrini
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.17983

Structures of TorsinA and its disease-mutant complexed with an activator reveal the molecular basis for primary dystonia
Cited by: 53
Author(s): F. Esra Demircioglu, Brian A Sosa, Jessica R. Ingram, Hidde L. Ploegh, Thomas Schwartz
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.42150

Structural organization of a major neuronal G protein regulator, the RGS7-Gβ5-R7BP complex
Cited by: 17
Author(s): Dipak N. Patil, Erumbi S. Rangarajan, Scott J. Novick, Bruce D. Pascal, D.J. Kojetin, Patrick R. Griffin, Tina Izard, Kirill A. Martemyanov
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.44353

Phosphorylation-mediated interactions with TOPBP1 couple 53BP1 and 9-1-1 to control the G1 DNA damage checkpoint
Cited by: 33
Author(s): Nicolas Bigot, Matthew Day, Robert A. Baldock, Felicity Z. Watts, Antony W. Oliver, Laurence H. Pearl
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.68710

Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation
Cited by: 34
Author(s): P. Kolata, Rouslan G. Efremov
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.51511

Modulation of the Erwinia ligand-gated ion channel (ELIC) and the 5-HT3 receptor via a common vestibule site
Cited by: 13
Author(s): Marijke Brams, Cédric Govaerts, Kumiko Kambara, Kerry L. Price, Radovan Spurný, Anant Gharpure, Els Pardon, G.L. Evans, Daniel Bertrand, Sarah S.C.R. Lummis, Ryan Hibbs, Jan Steyaert, Chris Ulens
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.32893

IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling
Cited by: 39
Author(s): Yoshimasa Yoneyama, Peter Lanzerstorfer, Hideaki Niwa, Takashi Umehara, Takashi Shibano, Shigeyuki Yokoyama, Kazuhiro Chida, Julian Weghuber, Fumihiko Hakuno, Shinichiro Takahashi
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.62518

Structure of bacterial phospholipid transporter MlaFEDB with substrate bound
Cited by: 42
Author(s): Nicolas Coudray, Georgia L. Isom, M.R. MacRae, Mariyah N. Saiduddin, Gira Bhabha, D.C. Ekiert
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.51492

Structural basis of substrate recognition by a polypeptide processing and secretion transporter
Cited by: 23
Author(s): Virapat Kieuvongngam, Paul Dominic B. Olinares, Anthony Palillo, Michael L. Oldham, Brian T. Chait, Jue Chen
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.49439

Decoding WW domain tandem-mediated target recognitions in tissue growth and cell polarity
Cited by: 33
Author(s): Zhijie Lin, Yang Zhou, Ruiling Xie, Zeyang Ji, Kun‐Liang Guan, Mingjie Zhang
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.33442

Decoding the centromeric nucleosome through CENP-N
Cited by: 98
Author(s): Satyakrishna Pentakota, Keda Zhou, Charlotte M. Smith, Stefano Maffini, Arsen Petrovic, Garry Morgan, John R. Weir, Ingrid R. Vetter, Andrea Musacchio, Karolin Luger
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.06074

Autoinhibition of Bruton's tyrosine kinase (Btk) and activation by soluble inositol hexakisphosphate
Cited by: 74
Author(s): Qi Wang, Erik Vogan, Laura M. Nocka, Connor Rosen, Julie A. Zorn, Stephen C. Harrison, John Kuriyan
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.52774

Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate
Cited by: 94
Author(s): Fei X, Tristan A Bell, Simon Jenni, Benjamin M. Stinson, T.A. Baker, Stephen C. Harrison, Robert T. Sauer
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.02375

AFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter
Cited by: 44
Author(s): Ursula Schulze‐Gahmen, Huasong Lu, Qiang Zhou, Tom Alber
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.43229

Structural basis of Ca2+-dependent activation and lipid transport by a TMEM16 scramblase
Cited by: 81
Author(s): Maria Falzone, Jan Rheinberger, B.C. Lee, Thasin Peyear, Linda Sasset, Ashleigh M. Raczkowski, Edward T. Eng, Annarita Di Lorenzo, Olaf S. Andersen, Crina M. Nimigean, Alessio Accardi
Software Mentions: 2
Published: over 7 years ago

10.1128/JVI.02511-16

Structural Definition of Duck Major Histocompatibility Complex Class I Molecules That Might Explain Efficient Cytotoxic T Lymphocyte Immunity to Influenza A Virus
Cited by: 16
Author(s): Yanan Wu, Junya Wang, Shenggen Fan, Rong Chen, Yanjie Liu, Jianhua Zhang, Hongyu Yuan, Ruiying Liang, Nianzhi Zhang, Chun Xia
Software Mentions: 2
Published: about 9 years ago

10.1107/S1399004714001308

Automated identification of elemental ions in macromolecular crystal structures
Cited by: 37
Author(s): Nathaniel Echols, Nader Morshed, Pavel V. Afonine, Airlie J. McCoy, Mitchell D. Miller, Randy J. Read, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: over 11 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: over 10 years ago

10.20411/pai.v4i2.338

Crystal Structure and Immunogenicity of the DS-Cav1-Stabilized Fusion Glycoprotein From Respiratory Syncytial Virus Subtype B
Cited by: 24
Author(s): Michael Joyce, Amy Bao, Man Chen, Ivelin S. Georgiev, Li Ou, Tatsiana Bylund, Aliaksandr Druz, Wing-Pui Kong, Dongjun Peng, E.J. Rundlet, Joseph G. Van Galen, Shuishu Wang, Yongping Yang, Baoshan Zhang, Gwo-Yu Chuang, Jason S. McLellan, Barney S. Graham, John R. Mascola, Peter D. Kwong
Software Mentions: 2
Published: almost 7 years ago

10.3390/v13040663

Structural Characterization of a Minimal Antibody against Human APOBEC3B
Cited by: 1
Author(s): Heng Tang, Özlem Demir, Fredy Kurniawan, William L. Brown, Ke Shi, Nicholas H. Moeller, Michael A. Carpenter, Christopher Belica, Kayo Orellana, Guocheng Du, Aaron M. LeBeau, Rommie E. Amaro, Reuben S. Harris, Hideki Aihara
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.135459

Intrahepatic heteropolymerization of M and Z alpha-1-antitrypsin
Cited by: 13
Author(s): Mattia Laffranchi, Emma Elliston, Elena Miranda, Juan Pérez, Riccardo Ronzoni, Alistair M. Jagger, Nina Heyer-Chauhan, Mark Brantly, Annamaria Fra, David A. Lomas, James A. Irving
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2018.01737

Expanding the Plant GSTome Through Directed Evolution: DNA Shuffling for the Generation of New Synthetic Enzymes With Engineered Catalytic and Binding Properties
Cited by: 10
Author(s): Evangelia Chronopoulou, Anastassios C. Papageorgiou, Farid S. Ataya, Irini Nianiou-Obeidat, Panagiotis Madesis, Nikolaos E. Labrou
Software Mentions: 2
Published: almost 8 years ago

10.1107/S0907444912017453

Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement withPrimeX
Cited by: 19
Author(s): Jeffrey A. Bell, Kenneth L. Ho, Ramy Farid
Software Mentions: 2
Published: about 14 years ago

10.3390/v11060504

Transcriptional Control and mRNA Capping by the GDP Polyribonucleotidyltransferase Domain of the Rabies Virus Large Protein
Cited by: 15
Author(s): Tomoaki Ogino, Todd Green
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2017.00202

Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases
Cited by: 26
Author(s): Dorota Focht, Tristan I. Croll, Bjørn Panyella Pedersen, Poul Nissen
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: about 13 years ago

10.3389/fmicb.2020.01178

Structural and Functional Characterization of a Unique AP Endonuclease From Deinococcus radiodurans
Cited by: 6
Author(s): Yuan He, Yiyi Wang, Qin Chen, Ying Xu, Kaiying Cheng, Hong Xu, Bing Teng, Ye Zhao, Liangyan Wang, Yuejin Hua
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.01468

Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase From Shigella flexneri
Cited by: 15
Author(s): Xiaopan Gao, Zhixia Mu, Xia Yu, Bo Qin, Justyna Aleksandra Wojdyla, Meitian Wang, Sheng Cui
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2019.01309

Comparative Study of Two Chondroitin Sulfate/Dermatan Sulfate 4-O-Sulfatases With High Identity
Cited by: 6
Author(s): Shumin Wang, Tianning Su, Qingdong Zhang, Jingwen Guan, Jing He, Lichuan Gu, Fuchuan Li
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: almost 9 years ago

10.1107/S2053230X19012172

Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking
Cited by: 3
Author(s): Eric Montemayor, Johanna M Virta, Lauren D. Hagler, Steven C. Zimmerman, Samuel E. Butcher
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.02995

Illumination of PRRSV Cytotoxic T Lymphocyte Epitopes by the Three-Dimensional Structure and Peptidome of Swine Lymphocyte Antigen Class I (SLA-I)
Cited by: 11
Author(s): Xiaocheng Pan, Nianzhi Zhang, Xiaohui Wei, Yinan Jiang, Rong Chen, Qirun Li, Ruiying Liang, Lijie Zhang, Lizhen Ma, Chun Xia
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.632423

MazEF Toxin-Antitoxin System-Mediated DNA Damage Stress Response in Deinococcus radiodurans
Cited by: 10
Author(s): Jingli Dai, Zijing Chen, Jinfeng Hou, Yudong Wang, Miao Guo, Junhui Cao, Liangyan Wang, Hong Xu, Bing Teng, Ye Zhao
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.625808

Structural Basis of VSIG3: The Ligand for VISTA
Cited by: 11
Author(s): Xiaoxue Xie, Caiping Chen, Wenting Chen, Jingwei Jiang, Lanlan Wang, Tingting Li, Hongbin Sun, Jun Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2016.00160

Structural Insights into Substrate Recognition by Clostridium difficile Sortase
Cited by: 4
Author(s): Jui-Chieh Yin, Chun-Hsien Fei, Yen-Chen Lo, Y.-Y. Hsiao, Jyun-Cyuan Chang, Jay C. Nix, Yuan-Yu Chang, Lee‐Wei Yang, I-Hsiu Huang, Shuying Wang
Software Mentions: 2
Published: almost 10 years ago

10.3390/molecules26185554

Enabling Efficient Folding and High-Resolution Crystallographic Analysis of Bracelet Cyclotides
Cited by: 7
Author(s): Yen‐Hua Huang, Qingdan Du, Zhihao Jiang, G. J. King, Brett Collins, Conan K. Wang, David J. Craik
Software Mentions: 2
Published: almost 5 years ago

10.1111/febs.15601

Angiotensin‐converting enzyme open for business: structural insights into the subdomain dynamics
Cited by: 16
Author(s): Gyles E. Cozier, Lizelle Lubbe, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: almost 6 years ago

10.1002/1873-3468.13246

Tripeptide binding in a proton‐dependent oligopeptide transporter
Cited by: 20
Author(s): Maria Martinez Molledo, E.M. Quistgaard, Christian Löw
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: about 8 years ago

10.3389/fmolb.2021.642606

Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus thermophilus
Cited by: 2
Author(s): Julien Cappele, Abbas M. Ali, Nathalie Leblond‐Bourget, Sandrine Mathiot, Tiphaine Dhalleine, Sophie Payot, Martin Savko, Claude Didierjean, F. Favier, Badreddine Douzi
Software Mentions: 2
Published: over 5 years ago

10.1016/j.celrep.2016.06.022

Structural Insights into Arl1-Mediated Targeting of the Arf-GEF BIG1 to the trans-Golgi
Cited by: 25
Author(s): Antonio Galindo, Nicolas Soler, Stephen H. McLaughlin, Myeong-Hee Yu, Roger L. Williams, Sean Munro
Software Mentions: 2
Published: about 10 years ago

10.1016/j.celrep.2018.05.046

Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design
Cited by: 52
Author(s): Kimmo Rantalainen, Zachary T. Berndsen, Sasha Murrell, Liwei Cao, Oluwarotimi Omorodion, Jonathan L. Torres, Mengyu Wu, Jeffrey C. Umotoy, Jeffrey Copps, Pascal Poignard, Elise Landais, James C. Paulson, Ian A. Wilson, Andrew B. Ward
Software Mentions: 2
Published: over 8 years ago

10.1140/epjc/s10052-016-4320-5

Energy versus centrality dependence of the jet quenching parameter $$\hat{q}$$ q ^ at RHIC and LHC: a new puzzle?
Cited by: 56
Author(s): Carlota Andrés, N. Armesto, Matthew Luzum, Carlos A. Salgado, Pía Zurita
Software Mentions: 2
Published: about 10 years ago

10.1111/febs.13930

Hydrogen peroxide‐mediated conversion of coproheme to heme b by HemQ—lessons from the first crystal structure and kinetic studies
Cited by: 36
Author(s): Stefan Hofbauer, Georg Mlynek, Lisa Milazzo, Dominic Pühringer, Daniel Maresch, Irene Schaffner, Paul G. Furtmüller, Giulietta Smulevich, Kristina Djinović-Carugo, Christian Obinger
Software Mentions: 2
Published: almost 10 years ago

10.1107/S2059798316016910

Strategies for carbohydrate model building, refinement and validation
Cited by: 45
Author(s): Jon Agirre
Software Mentions: 2
Published: over 9 years ago

10.1107/S0907444910001502

Detection and correction of underassigned rotational symmetry prior to structure deposition
Cited by: 12
Author(s): Billy K. Poon, Ralf W. Grosse‐Kunstleve, Peter H. Zwart, Nicholas K. Sauter
Software Mentions: 2
Published: over 16 years ago

10.3389/fcimb.2018.00051

Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Cited by: 13
Author(s): Xiujuan Zhang, Yuanmei Zhu, Hao Hu, Senyan Zhang, Pengfei Wang, Huihui Chong, Jin‐Sheng He, Xinquan Wang, Yuxian He
Software Mentions: 2
Published: over 8 years ago

10.3389/fcimb.2017.00411

Structure-Based Prototype Peptides Targeting the Pseudomonas aeruginosa Type VI Secretion System Effector as a Novel Antibacterial Strategy
Cited by: 14
Author(s): Xiaopan Gao, Zhixia Mu, Bo Qin, Yicheng Sun, Sheng Cui
Software Mentions: 2
Published: almost 9 years ago

10.3389/fimmu.2021.592447

Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism
Cited by: 4
Author(s): Xiaohui Wei, Song Wang, Zhuolin Li, Zibin Li, Zehui Qu, Suqiu Wang, Baohua Zou, Ruiying Liang, Chun Xia, Nianzhi Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.01529

The Effects of Framework Mutations at the Variable Domain Interface on Antibody Affinity Maturation in an HIV-1 Broadly Neutralizing Antibody Lineage
Cited by: 11
Author(s): Jeffrey Zhou, Hussain Zaidi, Therese Ton, Daniela Fera
Software Mentions: 2
Published: about 6 years ago

10.1107/S1399004715000152

Structure of Csd3 fromHelicobacter pylori, a cell shape-determining metallopeptidase
Cited by: 17
Author(s): Doo Ri An, Hyoun Sook Kim, Jieun Kim, Ha Na Im, Hye Jin Yoon, Ji Young Yoon, Jun Young Jang, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2019.00326

The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding
Cited by: 8
Author(s): Sara Gómez, Javier Querol-García, G. Sanchez-Barron, Marta Subías, Alex González-Alsina, V. Franco-Hidalgo, Sebastián Albertí, Santiago Rodrı́guez de Córdoba, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: over 9 years ago

10.1107/S0907444911007888

Structure of HLA-A*0301 in complex with a peptide of proteolipid protein: insights into the role of HLA-A alleles in susceptibility to multiple sclerosis
Cited by: 27
Author(s): Róisín M. McMahon, Lone Smidstrup Friis, Christian Siebold, Manuel A. Friese, Lars Fugger, E Y Jones
Software Mentions: 2
Published: over 15 years ago

10.3390/v7122946

Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone
Cited by: 43
Author(s): Carmela Garcia-Doval, José R. Castón, Daniel Luque, Meritxell Granell, José M. Otero, Antonio L. Llamas‐Saiz, Madalena Renouard, P. Boulanger, Mark J. van Raaij
Software Mentions: 2
Published: almost 11 years ago

10.1107/S1399004713033841

Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting
Cited by: 46
Author(s): Lei Chen, Tian Liu, Yong Zhou, Qi Chen, Xu Shen, Qing Yang
Software Mentions: 2
Published: over 12 years ago

10.1107/S2053230X17006021

Crystal structures of human Fabs targeting the Bexsero meningococcal vaccine antigen NHBA
Cited by: 4
Author(s): Martina Maritan, Roberta Cozzi, Paola Lo Surdo, Daniele Veggi, Matthew J. Bottomley, E. Malito
Software Mentions: 2
Published: over 9 years ago

10.1016/j.chom.2020.06.010

Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike
Cited by: 280
Author(s): Jiandong Huo, Yuguang Zhao, Jingshan Ren, Daming Zhou, Duyvesteyn Hme., H. Ginn, L. Carrique, Tomas Malinauskas, R.R. Ruza, Pranav N.M. Shah, Tiong Kit Tan, Pramila Rijal, Naomi Coombes, Kevin R. Bewley, Julia A. Tree, Julika Radecke, Neil G. Paterson, Piyasa Supasa, Juthathip Mongkolsapaya, Gavin Screaton, Miles W. Carroll, Alain Townsend, Elizabeth E. Fry, Raymond J. Owens, D.I. Stuart
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2017.00681

Target Identification of Mycobacterium tuberculosis Phenotypic Hits Using a Concerted Chemogenomic, Biophysical, and Structural Approach
Cited by: 21
Author(s): Grace Mugumbate, V. Mendes, M. Błaszczyk, Mohamad Sabbah, George Papadatos, Joël Lelièvre, Lluís Ballell, David Barros, C. Abell, Tom L. Blundell, John P. Overington
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphys.2013.00320

The N-terminal cytoplasmic region of NCBE displays features of an intrinsic disordered structure and represents a novel target for specific drug screening
Cited by: 3
Author(s): Kaare Bjerregaard-Andersen, Harmonie Perdreau‐Dahl, Hanne Guldsten, Jeppe Prætorius, Jan K. Jensen, J. Preben Morth
Software Mentions: 2
Published: over 13 years ago

10.3389/fpls.2019.01229

Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) From Arabidopsis thaliana
Cited by: 9
Author(s): Aaron H. Liepman, J. Vijayalakshmi, Daniel Peisach, Brian Hulsebus, Laura J. Olsen, Mark A. Saper
Software Mentions: 2
Published: almost 7 years ago

10.3390/v13061101

The Molecular Basis for Escherichia coli O157:H7 Phage FAHEc1 Endolysin Function and Protein Engineering to Increase Thermal Stability
Cited by: 7
Author(s): Michael J. Love, David Coombes, Sarah H. Manners, Gayan S. Abeysekera, Craig Billington, Renwick C. J. Dobson
Software Mentions: 2
Published: over 5 years ago

10.3390/genes8100278

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle
Cited by: 8
Author(s): Bohdan Schneider, Paulína Božíková, Petr Čech, Daniel Svozil, Jiří Černý
Software Mentions: 2
Published: almost 9 years ago

10.1107/S0021889811041161

iotbx.cif: a comprehensive CIF toolbox
Cited by: 539
Author(s): Richard J. Gildea, Luc J. Bourhis, Oleg V. Dolomanov, Ralf W. Grosse‐Kunstleve, Horst Puschmann, Paul D. Adams, Judith A. K. Howard
Software Mentions: 2
Published: almost 15 years ago

10.1107/S1600576715010432

Programming new geometry restraints: parallelity of atomic groups
Cited by: 13
Author(s): Oleg Sobolev, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: almost 13 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287