cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1107/S0907444912024420

Experimental phasing using zinc anomalous scattering
Cited by: 22
Author(s): Sun Mi Shin, Young Jun An, Chang-Sung Jeong, Min Kyu Kim, Sung Gyu Lee, Kwang Hoon Lee, Byung Ha Oh
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0050097

Structure of the Human Discs Large 1 PDZ2– Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering
Cited by: 8
Author(s): Kevin C. Slep
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0076803

Elucidation of Substrate Specificity in Aspergillus nidulans UDP-Galactose-4-Epimerase
Cited by: 7
Author(s): Sean A. Dalrymple, Jennifer S. Ko, I. S. Sheoran, Susan G. W. Kaminskyj, D.A.R. Sanders
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0121764

Stability of the Octameric Structure Affects Plasminogen-Binding Capacity of Streptococcal Enolase
Cited by: 13
Author(s): Amanda J. Cork, Daniel Ericsson, Ruby H. P. Law, Lachlan W. Casey, Eugene Valkov, Carlo Bertozzi, Anna Stamp, Blagojce Jovcevski, J. Andrew Aquilina, James C. Whisstock, Mark J. Walker, Boštjan Kobe
Software Mentions: 2
Published: over 11 years ago

10.1186/1472-6807-12-13

Crystal structure of the Yersinia enterocolitica type III secretion chaperone SycD in complex with a peptide of the minor translocator YopD
Cited by: 25
Author(s): Madeleine Schreiner, Hartmut H. Niemann
Software Mentions: 2
Published: over 14 years ago

10.1107/S1399004713033634

Multi-PAS domain-mediated protein oligomerization of PpsR fromRhodobacter sphaeroides
Cited by: 11
Author(s): Udo Heintz, Anton Meinhart, Andreas Winkler
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0034263

A Glutathione Transferase from Agrobacterium tumefaciens Reveals a Novel Class of Bacterial GST Superfamily
Cited by: 25
Author(s): Katholiki Skopelitou, Prathusha Dhavala, Anastassios C. Papageorgiou, Nikolaos E. Labrou
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0210842

Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif
Cited by: 7
Author(s): Xingchen Chen, Blake T. Riley, Simon J. de Veer, David E. Hoke, Jessica Van Haeften, Darren Leahy, Joakim E. Swedberg, Maria Brattsand, Perry J. Hartfield, Ashley M. Buckle, Jonathan M. Harris
Software Mentions: 2
Published: over 7 years ago

10.1186/s12900-015-0037-1

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase
Cited by: 8
Author(s): Norbert Schormann, Surajit Banerjee, Robert P. Ricciardi, Debasish Chattopadhyay
Software Mentions: 2
Published: about 11 years ago

10.1107/S0907444913025250

Improvements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration
Cited by: 13
Author(s): W. Awad, Gabriel Svensson Birkedal, Marjolein M.G.M. Thunnissen, Katrin Mani, D.T. Logan
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0062252

Crystal Structures of a Plant Trypsin Inhibitor from Enterolobium contortisiliquum (EcTI) and of Its Complex with Bovine Trypsin
Cited by: 30
Author(s): Dongwen Zhou, Yara Aparecida Lobo, Isabel de Fátima Correia Batista, Rafael Marques-Porto, Alla Gustchina, Maria Luíza Vilela Oliva, Alexander Wlodawer
Software Mentions: 2
Published: over 13 years ago

10.1186/1472-6807-14-3

Crystal structures of the human Dysferlin inner DysF domain
Cited by: 25
Author(s): Altin Sula, A.R. Cole, Corin Yeats, Christine A. Orengo, Nicholas H. Keep
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0192488

The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity
Cited by: 7
Author(s): Igor Sabljić, Marko Tomin, Mihaela Matovina, Iva Sučec, Ana Tomašić Paić, Antonija Tomić, Marija Abramić, Sanja Tomić
Software Mentions: 2
Published: over 8 years ago

10.1107/S2059798319000081

Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis
Cited by: 5
Author(s): Emily Furlong, Fabian Kurth, Lakshmanane Premkumar, Andrew E. Whitten, Jennifer L. Martin
Software Mentions: 2
Published: over 7 years ago

10.1186/1472-6807-7-45

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Cited by: 35
Author(s): Norbert Schormann, Alexei Grigorian, Alexandra B. Samal, Krishnan Raman, Lawrence J. DeLucas, Debasish Chattopadhyay
Software Mentions: 2
Published: about 19 years ago

10.1107/S2059798317003400

Estimation of the protein–ligand interaction energy for model building and validation
Cited by: 10
Author(s): Daria A. Beshnova, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0040066

The Crystal Structures of Dystrophin and Utrophin Spectrin Repeats: Implications for Domain Boundaries
Cited by: 27
Author(s): M. Muthu, Kylie A. Richardson, Andrew J. Sutherland-Smith
Software Mentions: 2
Published: about 14 years ago

10.1186/s12900-014-0024-y

Structural insights into Escherichia coli polymyxin B resistance protein D with X-ray crystallography and small-angle X-ray scattering
Cited by: 9
Author(s): Hang-Hyun Jo, Eui Young Jeong, Jinseong Jeon, Changill Ban
Software Mentions: 2
Published: over 11 years ago

10.1186/1472-6807-12-32

Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme’s active site closure
Cited by: 22
Author(s): Jaeok Park, Yih‐Shyan Lin, Joris W. De Schutter, Youla S. Tsantrizos, Albert M. Berghuis
Software Mentions: 2
Published: over 13 years ago

10.1186/1472-6807-14-17

Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
Cited by: 36
Author(s): Catherine Leettola, Mary Jane Knight, Duilio Cascio, Sigrid Hoffman, James U. Bowie
Software Mentions: 2
Published: about 12 years ago

10.1186/s12900-015-0030-8

Crystal structure and biophysical characterization of the nucleoside diphosphate kinase from Leishmania braziliensis
Cited by: 6
Author(s): P.S. Vieira, P.O. Giuseppe, Mário Tyago Murakami, Arthur Henrique Cavalcante de Oliveira
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0177161

Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation
Cited by: 31
Author(s): Erika Pellegrini, Luca Signor, Saurabh Singh, Elisabetta Boeri Erba, Stephen Cusack
Software Mentions: 2
Published: about 9 years ago

10.1107/S1399004714006439

Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28
Cited by: 17
Author(s): Sina Möhlmann, Rebecca Mathew, Piotr Neumann, Andreas Schmitt, Reinhard Lührmann, Ralf Ficner
Software Mentions: 2
Published: about 12 years ago

10.1186/1472-6807-12-7

Crystal structure of a new benzoic acid inhibitor of influenza neuraminidase bound with a new tilt induced by overpacking subsite C6
Cited by: 10
Author(s): Lalitha Venkatramani, Eric S. Johnson, Gundurao Kolavi, Gillian M. Air, Wayne J. Brouillette, Blaine H. M. Mooers
Software Mentions: 2
Published: over 14 years ago

10.1107/S0907444913024608

Split green fluorescent protein as a modular binding partner for protein crystallization
Cited by: 27
Author(s): Hau B. Nguyen, Li Wei Hung, Todd O. Yeates, Thomas C. Terwilliger, Geoffrey S. Waldo
Software Mentions: 2
Published: over 12 years ago

10.1186/1472-6807-13-30

Crystal structure of the γ-hydroxymuconic semialdehyde dehydrogenase from Pseudomonas sp. strainWBC-3, a key enzyme involved in para-Nitrophenol degradation
Cited by: 3
Author(s): Jing Su, Cong Zhang, Junjie Zhang, Tian‐Ran Wei, Deyu Zhu, Ning‐Yi Zhou, Lin Gu
Software Mentions: 2
Published: over 12 years ago

10.1107/S2059798319010878

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Cited by: 17
Author(s): Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keiichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji Sode
Software Mentions: 2
Published: almost 7 years ago

10.1042/BCJ20160806

Neisseria meningitidis factor H-binding protein bound to monoclonal antibody JAR5: implications for antibody synergy
Cited by: 18
Author(s): E. Malito, Paola Lo Surdo, Daniele Veggi, Laura Santini, Heather Stefek, Brunella Brunelli, Enrico Luzzi, Matthew J. Bottomley, Peter T. Beernink, María Scarselli
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0063370

Structural Basis for the Oligomerization-State Switch from a Dimer to a Trimer of an Engineered Cortexillin-1 Coiled-Coil Variant
Cited by: 2
Author(s): Saša Bjelić, Mara M. Wieser, Daniel Frey, Christian U. Stirnimann, Mark R. Chance, Rolf Jaussi, Michel O. Steinmetz, Richard A. Kammerer
Software Mentions: 2
Published: over 13 years ago

10.1042/BCJ20200368

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences
Cited by: 8
Author(s): Izaak N Beck, B. F. Usher, Hannah G Hampton, Peter C. Fineran, Tim R. Blower
Software Mentions: 2
Published: about 6 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP+
Cited by: 16
Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: almost 8 years ago

10.1107/S0907444911014302

Structure-based design of a disulfide-linked oligomeric form of the simian virus 40 (SV40) large T antigen DNA-binding domain
Cited by: 7
Author(s): Gretchen Meinke, Paul J. Phelan, Amélie Fradet-Turcotte, Jacques Archambault, Peter A. Bullock
Software Mentions: 2
Published: over 15 years ago

10.1107/S2059798318017047

The crystal structure of theN-acetylglucosamine 2-epimerase fromNostocsp. KVJ10 reveals the true dimer
Cited by: 5
Author(s): Marie Josée Haglund Halsør, U. Rothweiler, Bjørn Altermark, Inger Lin Uttakleiv Ræder
Software Mentions: 2
Published: over 7 years ago

10.1107/S1399004715018519

Sent packing: protein engineering generates a new crystal form ofPseudomonas aeruginosaDsbA1 with increased catalytic surface accessibility
Cited by: 5
Author(s): Róisín M. McMahon, M. Coincon, Stephanie Tay, Begoña Heras, Craig J. Morton, M.J. Scanlon, Jennifer L. Martin
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798319009574

Biochemical and structural explorations of α-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction
Cited by: 4
Author(s): Hsien‐Wei Yeh, Kuan Hung Lin, S.Y. Lyu, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: about 7 years ago

10.1042/BCJ20180867

Solution structures and biophysical analysis of full-length group A PAKs reveal they are monomeric and auto-inhibited in cis
Cited by: 10
Author(s): F.J. Sorrell, Lena Marie Kilian, J.M. Elkins
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0091232

Molecular Recognition of the Neurotransmitter Acetylcholine by an Acetylcholine Binding Protein Reveals Determinants of Binding to Nicotinic Acetylcholine Receptors
Cited by: 34
Author(s): Jeppe Olsen, Thomas Balle, Michael Gajhede, Philip K. Ahring, J.S. Kastrup
Software Mentions: 2
Published: over 12 years ago

10.1042/BCJ20160791

Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain
Cited by: 39
Author(s): Ni Tien, Antreas C. Kalli, Fiona B. Naughton, Luke A. Yates, Omar Naneh, Mirijam Kozorog, Gregor Anderluh, Mark S. P. Sansom, Robert J.C. Gilbert
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0241912

Molecular analysis of cyclic α-maltosyl-(1→6)-maltose binding protein in the bacterial metabolic pathway
Cited by: 2
Author(s): Masanori Kohno, T. Arakawa, Naoki Sunagawa, Tetsuya Mori, Kiyohiko Igarashi, Tetsuya Nishimoto, Shinya Fushinobu
Software Mentions: 2
Published: over 5 years ago

10.1021/acs.biochem.1c00258

Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag
Cited by: 62
Author(s): Jonas Wilhelm, Stefanie F. Kühn, Mirosław Tarnawski, Guillaume Gotthard, Jana Tünnermann, Timo Tänzer, Iuliia A. Karpenko, Nicole Mertes, Lin Xue, Ulrike Uhrig, Jochen Reinstein, Julien Hiblot, Kai Johnsson
Software Mentions: 2
Published: about 5 years ago

10.1107/S2059798315010268

Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23Nterm
Cited by: 9
Author(s): Michele Cianci, Matthew R. Groves, David Barford, Thomas R. Schneider
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0155846

The Crystal Structure of the YknZ Extracellular Domain of ABC Transporter YknWXYZ from Bacillus amyloliquefaciens
Cited by: 9
Author(s): Yongbin Xu, Jianyun Guo, Lulu Wang, Rui Jiang, Xiaoling Jin, Jing Liu, Fan Sheng-di, Chunshan Quan, Nam‐Chul Ha
Software Mentions: 2
Published: about 10 years ago

10.1186/1756-0500-5-626

Crystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse
Cited by: 8
Author(s): Sergei P. Boudko, Yoshihiro Ishikawa, Thomas F. Lerch, Jay C. Nix, Michael S. Chapman, Hans Peter Bächinger
Software Mentions: 2
Published: almost 14 years ago

10.1016/j.bbapap.2017.08.005

Thermal sensitivity and flexibility of the Cε3 domains in immunoglobulin E
Cited by: 9
Author(s): K.A. Dore, Anna M. Davies, N. Drinkwater, Andrew J. Beavil, James M. McDonnell, Brian J. Sutton
Software Mentions: 2
Published: almost 9 years ago

10.1107/S2059798317000067

AceDRG: a stereochemical description generator for ligands
Cited by: 228
Author(s): Fei Long, Robert A. Nicholls, Paul Emsley, Saulius Graǽulis, Andrius Merkys, Antanas Vaitkus, Garib N. Murshudov
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0124272

LucY: A Versatile New Fluorescent Reporter Protein
Cited by: 4
Author(s): M.E. Auldridge, Heidi B. Cao, Satyabrata Sen, Laura Franz, C.A. Bingman, Ragothaman M. Yennamalli, George N. Phillips, David A. Mead, Eric J. Steinmetz
Software Mentions: 2
Published: over 11 years ago

10.1186/s12866-015-0365-0

Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae
Cited by: 33
Author(s): Stephan Endres, Joachim Granzin, Franco Circolone, Andreas M. Stadler, Ulrich Krauß, Thomas Drepper, Vera Svensson, Esther Knieps-Grünhagen, Astrid Wirtz, Anneliese Cousin, Petra Tielen, Dieter Willbold, Karl‐Erich Jaeger, Renu Batra‐Safferling
Software Mentions: 2
Published: over 11 years ago

10.1242/bio.037663

Development and validation of RdRp Screen, a crystallization screen for viral RNA-dependent RNA polymerases
Cited by: 8
Author(s): Federica Riccio, Sandeep K. Talapatra, Sally Oxenford, Richard Angell, Michela Mazzon, Frank Kozielski
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0174284

Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW
Cited by: 19
Author(s): Shankar Raj Devkota, Eunju Kwon, Soonhoi Ha, Hyeun Wook Chang, Dong Young Kim
Software Mentions: 2
Published: over 9 years ago

10.1155/2019/6125068

Structural Basis for the Selective Inhibition of Cdc2-Like Kinases by CX-4945
Cited by: 17
Author(s): Joo Youn Lee, Ji-Sook Yun, Woo‐Keun Kim, Hang-Suk Chun, Hyeonseok Jin, Sungchan Cho, Jeong Ho Chang
Software Mentions: 2
Published: almost 7 years ago

10.3390/biom10040615

Insight into the RssB-Mediated Recognition and Delivery of σs to the AAA+ Protease, ClpXP
Cited by: 10
Author(s): Dimce Micevski, Kornelius Zeth, Terrence D. Mulhern, Verena J. Schuenemann, Jessica E. Zammit, Kaye N. Truscott, David A. Dougan
Software Mentions: 2
Published: over 6 years ago

10.3390/biom9060221

The Role of a Key Amino Acid Position in Species-Specific Proteinaceous dUTPase Inhibition
Cited by: 3
Author(s): András Benedek, Fanni Temesváry-Kis, Tamjidmaa Khatanbaatar, Ibolya Leveles, Éva Viola Surányi, J. Szabó, Lívius Wunderlich, Beáta G. Vértessy
Software Mentions: 2
Published: about 7 years ago

10.1186/1741-7007-9-48

Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1
Cited by: 49
Author(s): Alexei Korennykh, Pascal F. Egea, А.A. Коростелев, J. Finer-Moore, Robert M. Stroud, Chao Zhang, Kevan M. Shokat, Peter Walter
Software Mentions: 2
Published: about 15 years ago

10.3390/biom10091239

N-Terminal Segment of TvCyP2 Cyclophilin from Trichomonas vaginalis Is Involved in Self-Association, Membrane Interaction, and Subcellular Localization
Cited by: 2
Author(s): Sarita Aryal, Heng-Ming Hsu, Yuan‐Chao Lou, Chien-Hsin Chu, Jung-Hsiang Tai, Chun‐Hua Hsu, Chinpan Chen
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2059798317016618

Molecular architectures of benzoic acid-specific type III polyketide synthases
Cited by: 11
Author(s): Charles Stewart, Kate Woods, Greg Macias, Andrew C. Allan, Roger P. Hellens, Joseph P. Noel
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0165917

Crystal Structures of Group B Streptococcus Glyceraldehyde-3-Phosphate Dehydrogenase: Apo-Form, Binary and Ternary Complexes
Cited by: 14
Author(s): Norbert Schormann, Chapelle A. Ayres, Fry Alexandra, Todd Green, Surajit Banerjee, Glen C. Ulett, Debasish Chattopadhyay
Software Mentions: 2
Published: over 9 years ago

10.1107/S1399004714025188

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography
Cited by: 2
Author(s): Takashi Kawamura, Tomoki Kobayashi, Nobuhisa Watanabe
Software Mentions: 2
Published: over 11 years ago

10.3390/biom11070996

Crystal Structure Reveals the Full Ras–Raf Interface and Advances Mechanistic Understanding of Raf Activation
Cited by: 28
Author(s): Trinity Cookis, Carla Mattos
Software Mentions: 2
Published: about 5 years ago

10.3390/biom9030093

Structural Analysis of the 42 kDa Parvulin of Trypanosoma brucei
Cited by: 0
Author(s): Edisa Rehic, Dana Hoenig, Bianca Kamba, Anna Goehring, Eckhard Hofmann, Raphael Gasper, Anja Matena, Peter Bayer
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0140953

Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Cited by: 4
Author(s): Wenjie Wang, Cheng Wang, Ming Luo, Qingyu Yan, Gino Yu, Qiong Li, Dong Cao, Shengfeng Huang, Anlong Xu, Roy A. Mariuzza, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0188005

Crystal structures of ternary complexes of archaeal B-family DNA polymerases
Cited by: 36
Author(s): H.M. Kropp, Karin Betz, Johannes Wirth, Kay Diederichs, Andreas Marx
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0089027

Distinct Structural Features of the Peroxide Response Regulator from Group A Streptococcus Drive DNA Binding
Cited by: 13
Author(s): Chang Hong Lin, Shi-Yu Chao, Michal Hammel, Jay C. Nix, Hsiao-Ling Tseng, Chih-Cheng Tsou, Chun-Hsien Fei, Huo-Sheng Chiou, U‐Ser Jeng, Yee‐Shin Lin, Woei‐Jer Chuang, Jiunn-Jong Wu, Shuying Wang
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0092249

Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Cited by: 20
Author(s): Keisuke Sugimoto, Masuo Senda, Daisuke Kasai, Masao Fukuda, Eiji Masai, Toshiya Senda
Software Mentions: 2
Published: over 12 years ago

10.1107/S2059798315021580

Using selenomethionyl derivatives to assign sequence in low-resolution structures of the AP2 clathrin adaptor
Cited by: 1
Author(s): Bernard T. Kelly, Stephen C. Graham, David J. Owen
Software Mentions: 2
Published: over 10 years ago

10.1016/j.bmc.2018.02.043

Structure activity relationship studies on rhodanines and derived enethiol inhibitors of metallo-β-lactamases
Cited by: 18
Author(s): D. Zhang, Marios S. Markoulides, Dmitrijs Stepanovs, Anna M. Rydzik, Ahmed El-Hussein, C. Bon, Jos J. A. G. Kamps, Klaus‐Daniel Umland, P. Collins, Samuel T. Cahill, D.Y. Wang, Frank von Delft, Jürgen Brem, McDonough, Christopher J. Schofield
Software Mentions: 2
Published: about 8 years ago

10.1107/S205979831900175X

Refinement of protein structures using a combination of quantum-mechanical calculations with neutron and X-ray crystallographic data
Cited by: 13
Author(s): Octav Caldararu, Francesco Manzoni, Esko Oksanen, D.T. Logan, Ulf Ryde
Software Mentions: 2
Published: over 7 years ago

10.1107/S205979831601723X

The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservativeversusenthusiastic modelling
Cited by: 10
Author(s): Andreas Naschberger, Barbara G. Fürnrohr, Tihana Lenac Roviš, Suzana Malić, Klaus Scheffzek, Hans Dieplinger, Bernhard Rupp
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0216979

Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis
Cited by: 2
Author(s): Ke Shi, Chong-Min Kyung, Kelly G. Aukema, Thomas Lee, Asim K. Bera, Jennifer L. Seffernick, Lawrence P. Wackett, Hideki Aihara
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0070518

Mcm10 Self-Association Is Mediated by an N-Terminal Coiled-Coil Domain
Cited by: 15
Author(s): Wenyue Du, Ajeetha Josephrajan, Suraj Adhikary, Timothy M. Bowles, Anja‐Katrin Bielinsky, Brandt F. Eichman
Software Mentions: 2
Published: about 13 years ago

10.1042/BSR20170001

Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9
Cited by: 3
Author(s): Lifang Sun, Pu Chen, Su Y, Zhixiong Cai, Lingwei Ruan, Xun Xu, Yunkun Wu
Software Mentions: 2
Published: over 9 years ago

10.1186/s12915-019-0698-5

Crystal structure of diamondback moth ryanodine receptor Repeat34 domain reveals insect-specific phosphorylation sites
Cited by: 18
Author(s): Tong Xu, Zhiguang Yuchi
Software Mentions: 2
Published: almost 7 years ago

10.1107/S1399004714015788

Solving the RNA polymerase I structural puzzle
Cited by: 21
Author(s): María Moreno-Morcillo, Nicholas M. I. Taylor, Tim Gruene, Pierre Legrand, Umar Rashid, Federico M. Ruiz, Ulrich Steuerwald, Christoph W. Müller, Carlos Fernández‐Tornero
Software Mentions: 2
Published: almost 12 years ago

10.1107/S2059798317018289

The deduced role of a chitinase containing two nonsynergistic catalytic domains
Cited by: 16
Author(s): Tian Liu, Weixing Zhu, Jing Wang, Yong Zhou, Yanwei Duan, Mingli Qu, Qing Yang
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0196642

Structure of frequency-interacting RNA helicase from Neurospora crassa reveals high flexibility in a domain critical for circadian rhythm and RNA surveillance
Cited by: 9
Author(s): Yalemi Morales, Keith J. Olsen, Jacqueline M. Bulcher, Sean Johnson
Software Mentions: 2
Published: over 8 years ago

10.1042/BSR20150183

Epsilon glutathione transferases possess a unique class-conserved subunit interface motif that directly interacts with glutathione in the active site
Cited by: 10
Author(s): Jantana Wongsantichon, Robert Robinson, Albert J. Ketterman
Software Mentions: 2
Published: over 10 years ago

10.1107/S0907444910007493

Features and development of Coot
Cited by: 21,554
Author(s): Paul Emsley, Bernhard Lohkamp, William G. Scott, Kevin Cowtan
Software Mentions: 2
Published: over 16 years ago

10.1107/S2059798318018442

The atypical thiol–disulfide exchange protein α-DsbA2 fromWolbachia pipientisis a homotrimeric disulfide isomerase
Cited by: 4
Author(s): Patricia Walden, Andrew E. Whitten, Lakshmanane Premkumar, Maria A. Halili, Begoña Heras, G. J. King, Jennifer L. Martin
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798316000401

An overview of heavy-atom derivatization of protein crystals
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Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798315023116

Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects
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Author(s): Christian Reichen, Chaithanya Madhurantakam, Simon Hansen, Markus G. Grütter, Andreas Plückthun, Peer R. E. Mittl
Software Mentions: 2
Published: over 10 years ago

10.1042/BSR20193360

The Trp triad within the V-domain of the receptor for advanced glycation end products modulates folding, stability and ligand binding
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Author(s): Venkata S.K. Indurthi, Jaime L. Jensen, Estelle Leclerc, Sangita C. Sinha, Christopher L. Colbert, Stefan Vetter
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0191610

Crystal structure of a UDP-GlcNAc epimerase for surface polysaccharide biosynthesis in Acinetobacter baumannii
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Author(s): Bhumika S. Shah, Heather E. Ashwood, S.J. Harrop, Daniel N. Farrugia, Ian T. Paulsen, Bridget C. Mabbutt
Software Mentions: 2
Published: over 8 years ago

10.1186/s12915-017-0372-8

Ion- and water-binding sites inside an occluded hourglass pore of a trimeric intracellular cation (TRIC) channel
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Author(s): Xiaomin Ou, Jing Guo, Long Wang, Hongxin Yang, Xiuying Liu, Jianyuan Sun, Zhongfan Liu
Software Mentions: 2
Published: over 9 years ago

10.1186/s13068-019-1449-0

An actinobacteria lytic polysaccharide monooxygenase acts on both cellulose and xylan to boost biomass saccharification
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Author(s): Thamy Lívia Ribeiro Corrêa, Atílio Tomazini Júnior, L. D. Wolf, Marcos Silveira Buckeridge, Leandro Vieira dos Santos, Mário Tyago Murakami
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798319010027

Structural comparison of protiated, H/D-exchanged and deuterated human carbonic anhydrase IX
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Author(s): Katarina Koruza, Bénédicte Lafumat, Maria Nyblom, Brian P. Mahon, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12915-015-0167-8

Role of electrostatic interactions for ligand recognition and specificity of peptide transporters
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Author(s): Rajendra Boggavarapu, Jean-Marc Jeckelmann, Daniel Harder, Zöhre Ucurum, Dimitrios Fotiadis
Software Mentions: 2
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10.1186/s12915-016-0303-0

Structure of the catalytic domain of the colistin resistance enzyme MCR-1
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Author(s): V. Stojanoski, Banumathi Sankaran, B. V. Venkataram Prasad, Laurent Poirel, Patrice Nordmann, Timothy Palzkill
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12859-014-0434-7

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions
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Author(s): Padmaja Natarajan, Marco Punta, Abhinav Kumar, Andrew Yeh, Adam Godzik, L. Aravind
Software Mentions: 2
Published: over 11 years ago

10.1186/s13068-017-1009-4

Determination of the native features of the exoglucanase Cel48S from Clostridium thermocellum
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Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2091-12-59

Delineation of the Pasteurellaceae-specific GbpA-family of glutathione-binding proteins
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Author(s): Bjorn Vergauwen, Ruben Van der Meeren, Ann Dansercoer, Savvas N. Savvides
Software Mentions: 2
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10.1371/journal.pone.0064901

Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold
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Author(s): A. Goepfert, Frédéric V. Stanger, Christoph Dehio, Tilman Schirmer
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10.1107/S2059798317013043

Conformational dynamics of the essential sensor histidine kinase WalK
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10.1371/journal.pone.0224689

Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms
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10.1371/journal.pone.0085940

Crystal Structures of HIV-1 gp120 Envelope Glycoprotein in Complex with NBD Analogues That Target the CD4-Binding Site
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Author(s): Young Do Kwon, Judith M. LaLonde, Yongping Yang, Mark A. Elban, Akihiro Sugawara, Joel R. Courter, David M. Jones, Amos B. Smith, Asim K. Debnath, Peter D. Kwong
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0050055

Tolerance of Protein Folding to a Circular Permutation in a PDZ Domain
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Author(s): Greta Hultqvist, Avinash S. Punekar, Angela Morrone, N. Celestine, Åke Engström, M. Selmer, Stefano Gianni, Per Jemth
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0094166

Biochemical Properties and Atomic Resolution Structure of a Proteolytically Processed β-Mannanase from Cellulolytic Streptomyces sp. SirexAA-E
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Author(s): Taichi E. Takasuka, Justin Acheson, C.M. Bianchetti, Ben M. Prom, Lai F. Bergeman, Adam J. Book, Cameron R. Currie, Brian G. Fox
Software Mentions: 2
Published: over 12 years ago

10.1107/S139900471501857X

Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Cited by: 50
Author(s): Takanori Nakane, Changyong Song, Mamoru Suzuki, Eriko Nango, Jun Kobayashi, Tetsuya Masuda, Shiro Inoue, Eiichi Mizohata, Toru Nakatsu, Tomoyuki Tanaka, Rie Tanaka, Tatsuro Shimamura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, So Iwata, Michihiro Sugahara
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798319006831

Structural and functional characterization of CMP-N-acetylneuraminate synthetase fromVibrio cholerae
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Author(s): Sucharita Bose, Debayan Purkait, Deepthi Joseph, Vinod Nayak, Ramaswamy Subramanian
Software Mentions: 2
Published: about 7 years ago

10.26508/lsa.202000873

A conserved PI(4,5)P2–binding domain is critical for immune regulatory function of DOCK8
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Author(s): Tetsuya Sakurai, Mutsuko Kukimoto-Niino, Kazufumi Kunimura, Nana Yamane, Daiji Sakata, Ryosuke Aihara, Tomoharu Yasuda, Shigeyuki Yokoyama, Mikako Shirouzu, Yoshihiro Fukui, Takehito Uruno
Software Mentions: 2
Published: over 5 years ago

10.26508/lsa.202000776

Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis
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Author(s): Hongwen Chen, Yang Liu, Xiaochun Li
Software Mentions: 2
Published: about 6 years ago

10.1107/S2059798318013347

Improving the accuracy and resolution of neutron crystallographic data by three-dimensional profile fitting of Bragg peaks in reciprocal space
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Author(s): Brendan Sullivan, Rick Archibald, Patricia S. Langan, Holger Dobbek, Martin Bommer, Robert L. McFeeters, Leighton Coates, Xiaoping Wang, Franz X. Gallmeier, J.M. Carpenter, V. E. Lynch, Paul Langan
Software Mentions: 2
Published: almost 8 years ago

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Papers Mentioning PHENIX 2,287