cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1016/j.jmb.2013.05.024

Characterization of 14-3-3-ζ Interactions with Integrin Tails
Cited by: 29
Author(s): Roman Bonet, Ioannis Vakonakis, Iain D. Campbell
Software Mentions: 2
Published: about 13 years ago

Crystal Structure of the VapBC Toxin–Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly
Cited by: 70
Author(s): Christian Dienemann, Andreas Bøggild, Kristoffer Skovbo Winther, Kenn Gerdes, D.E. Brodersen
Software Mentions: 2
Published: almost 15 years ago

10.1016/j.jmb.2015.07.014

Structures of the Ultra-High-Affinity Protein–Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa
Cited by: 25
Author(s): Amar Joshi, Rhys Grinter, Inokentijs Josts, Sabrina Chen, Justyna Aleksandra Wojdyla, E.D. Lowe, Renata Kaminska, Connor Sharp, Laura C. McCaughey, A.W. Roszak, Richard J. Cogdell, Olwyn Byron, Daniel Walker, Colin Kleanthous
Software Mentions: 2
Published: about 11 years ago

10.1016/j.jmb.2019.10.005

Paratope Duality and Gullying are Among the Atypical Recognition Mechanisms Used by a Trio of Nanobodies to Differentiate Ebolavirus Nucleoproteins
Cited by: 4
Author(s): Laura J. Sherwood, Alexander B. Taylor, P. John Hart, Andrew Hayhurst
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jmb.2010.01.035

Structural Basis of Substrate Binding in WsaF, a Rhamnosyltransferase from Geobacillus stearothermophilus
Cited by: 22
Author(s): Kerstin Steiner, Gregor Hagelueken, Paul Messner, Christina Schäffer, James H. Naismith
Software Mentions: 2
Published: over 16 years ago

10.1016/j.jmb.2015.01.012

Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme
Cited by: 21
Author(s): Wenyuan Liang, Min Ren, Fan Zhao, Wei-Jen Tang
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jmb.2011.03.047

Interaction of the p53 DNA-Binding Domain with Its N-Terminal Extension Modulates the Stability of the p53 Tetramer
Cited by: 79
Author(s): Eviatar Natan, Çetin Baloğlu, Kevin Pagel, Stefan Freund, Nina Morgner, Carol V. Robinson, Alan R. Fersht, A.C. Joerger
Software Mentions: 2
Published: over 15 years ago

10.1016/j.jmb.2009.07.026

Crystal Structures of Wzb of Escherichia coli and CpsB of Streptococcus pneumoniae, Representatives of Two Families of Tyrosine Phosphatases that Regulate Capsule Assembly
Cited by: 69
Author(s): Gregor Hagelueken, Hexian Huang, Iain L. Mainprize, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: about 17 years ago

10.1016/j.jmb.2018.02.010

Structural and Mechanistic Analysis of the Choline Sulfatase from Sinorhizobium melliloti: A Class I Sulfatase Specific for an Alkyl Sulfate Ester
Cited by: 16
Author(s): Bert van Loo, Markus Schöber, Eugene Valkov, Magdalena Heberlein, Erich Bornberg‐Bauer, Kurt Faber, Marko Hyvönen, Florian Hollfelder
Software Mentions: 2
Published: over 8 years ago

10.1016/j.jmb.2008.01.072

Structures of the Shigella flexneri Type 3 Secretion System Protein MxiC Reveal Conformational Variability Amongst Homologues
Cited by: 33
Author(s): Janet E. Deane, Pietro Roversi, Carole King, Steven Johnson, Susan M. Lea
Software Mentions: 2
Published: over 18 years ago

10.7554/eLife.48496

Electron cryo-microscopy of bacteriophage PR772 reveals the elusive vertex complex and the capsid architecture
Cited by: 5
Author(s): Hemanth K. N. Reddy, Marta Carroni, János Hajdu, Martin Svenda
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.06547

ULK3 regulates cytokinetic abscission by phosphorylating ESCRT-III proteins
Cited by: 78
Author(s): Anna Caballe, Dawn M Wenzel, Monica Agromayor, Steven L. Alam, Jack J. Skalicky, Magdalena Kloc, Jeremy G. Carlton, Leticia Labrador, Wesley I. Sundquist, Juan Martín-Serrano
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.07574

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography
Cited by: 140
Author(s): D.A. Keedy, Lukas Kenner, Matthew Warkentin, R.A. Woldeyes, Jesse B. Hopkins, Michael C. Thompson, Aaron S. Brewster, A.H. Van Benschoten, E.L. Baxter, Monarin Uervirojnangkoorn, S.E. McPhillips, Jianguo Song, Roberto Alonso-Mori, James M. Holton, William I. Weis, Axel T. Brunger, S. Michael Soltis, Henrik T. Lemke, Ana González, Nicholas K. Sauter, Aina E. Cohen, Henry van den Bedem, Robert Thorne, James S. Fraser
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.49572

Structure-based characterization of novel TRPV5 inhibitors
Cited by: 36
Author(s): Taylor Hughes, John Smith Del Rosario, Anoop Kapoor, Aysenur Yazici, Yevgen Yudin, Edwin C. Fluck, Marta Filizola, Tibor Rohács, Vera Y. Moiseenkova-Bell
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.31502

3.3-Å resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound
Cited by: 34
Author(s): Edward J. Brignole, Kuang‐Lei Tsai, Johnathan Chittuluru, Haoran Li, Yimon Aye, Pawel A. Penczek, Jo Anne Stubbe, Catherine L. Drennan, Francisco J. Asturias
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.65903

The crystal structure of bromide-bound GtACR1 reveals a pre-activated state in the transmembrane anion tunnel
Cited by: 10
Author(s): Hai Li, Chia‐Ying Huang, Elena G. Govorunova, Oleg A. Sineshchekov, Adrian Yi, Kenneth J. Rothschild, Meitian Wang, Lei Zheng, John L. Spudich
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.26693

MELK is not necessary for the proliferation of basal-like breast cancer cells
Cited by: 74
Author(s): Hai‐Tsang Huang, Hyuk‐Soo Seo, Tinghu Zhang, Yubao Wang, Baishan Jiang, Qing Li, Dennis L. Buckley, Behnam Nabet, Justin M. Roberts, Joshiawa Paulk, Shiva Dastjerdi, Alessio Ciulli, Hilary McLauchlan, Jennifer L. Moran, James E. Bradner, Michael J. Eck, Sirano Dhe‐Paganon, Jean J. Zhao, Nathanael S. Gray
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.56451

Characterization of the kinetic cycle of an ABC transporter by single-molecule and cryo-EM analyses
Cited by: 47
Author(s): Ling Wang, Z.L. Johnson, Mark Wasserman, Jesper Levring, Jue Chen, Shixin Liu
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.21600

Crenactin forms actin-like double helical filaments regulated by arcadin-2
Cited by: 31
Author(s): Thierry Izoré, Danguole Kureisaite-Ciziene, Stephen H. McLaughlin, Jan Löwe
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.02217

Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers
Cited by: 62
Author(s): Jonathan M. Scholey, Stanley Nithianantham, Jonathan M. Scholey, Jawdat Al-Bassam
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.41028

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila
Cited by: 31
Author(s): Sibo Cheng, James A. Ashley, J.D. Kurleto, Meike Lobb-Rabe, Yeonhee Jenny Park, Robert A. Carrillo, Engin Özkan
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.02057

Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network
Cited by: 111
Author(s): Jerome C. Nwachukwu, Sathish Srinivasan, Nelson E. Bruno, A.A. Parent, Travis S. Hughes, Julie A. Pollock, Olsi Gjyshi, V. Cavett, J. Nowak, Rubén D. Garcia-Ordoñez, René Houtman, Patrick R. Griffin, D.J. Kojetin, John A. Katzenellenbogen, Michael D. Conkright, K.W. Nettles
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.03604

Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters
Cited by: 49
Author(s): Z.L. Johnson, Jun-Ho Lee, Kiyoun Lee, Minhee Lee, Deok-Ho Kwon, Jiyong Hong, Seok‐Yong Lee
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.36340

Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors
Cited by: 53
Author(s): Yang Yang, Dongwei Kang, Laura A. Nguyen, Z.B. Smithline, Christophe Pannecouque, Peng Zhan, Xinyong Liu, Thomas A. Steitz
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.00184

Distinct gating mechanisms revealed by the structures of a multi-ligand gated K+ channel
Cited by: 22
Author(s): Chunguang Kong, Weizhong Zeng, Sheng Ye, Liping Chen, David Sauer, Y. Amy Lam, M.G. Derebe, Youxing Jiang
Software Mentions: 2
Published: almost 14 years ago

10.7554/eLife.06792

Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence
Cited by: 26
Author(s): Kevin G. Hicks, Scott P. Delbecq, Enea Sancho‐Vaello, Marie-Pierre Blanc, Katja K. Dove, Lynne R. Prost, Margaret E. Daley, Kornelius Zeth, Rachel E. Klevit, Samuel I. Miller
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.00482

Mechanism for priming DNA synthesis by yeast DNA Polymerase α
Cited by: 89
Author(s): Rajika L. Perera, Rubben Torella, Sebastian Klinge, M.L. Kilkenny, Joseph D. Maman, Luca Pellegrini
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.17983

Structures of TorsinA and its disease-mutant complexed with an activator reveal the molecular basis for primary dystonia
Cited by: 53
Author(s): F. Esra Demircioglu, Brian A Sosa, Jessica R. Ingram, Hidde L. Ploegh, Thomas Schwartz
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.42150

Structural organization of a major neuronal G protein regulator, the RGS7-Gβ5-R7BP complex
Cited by: 17
Author(s): Dipak N. Patil, Erumbi S. Rangarajan, Scott J. Novick, Bruce D. Pascal, D.J. Kojetin, Patrick R. Griffin, Tina Izard, Kirill A. Martemyanov
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.44353

Phosphorylation-mediated interactions with TOPBP1 couple 53BP1 and 9-1-1 to control the G1 DNA damage checkpoint
Cited by: 33
Author(s): Nicolas Bigot, Matthew Day, Robert A. Baldock, Felicity Z. Watts, Antony W. Oliver, Laurence H. Pearl
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.68710

Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation
Cited by: 34
Author(s): P. Kolata, Rouslan G. Efremov
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.51511

Modulation of the Erwinia ligand-gated ion channel (ELIC) and the 5-HT3 receptor via a common vestibule site
Cited by: 13
Author(s): Marijke Brams, Cédric Govaerts, Kumiko Kambara, Kerry L. Price, Radovan Spurný, Anant Gharpure, Els Pardon, G.L. Evans, Daniel Bertrand, Sarah S.C.R. Lummis, Ryan Hibbs, Jan Steyaert, Chris Ulens
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.32893

IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling
Cited by: 39
Author(s): Yoshimasa Yoneyama, Peter Lanzerstorfer, Hideaki Niwa, Takashi Umehara, Takashi Shibano, Shigeyuki Yokoyama, Kazuhiro Chida, Julian Weghuber, Fumihiko Hakuno, Shinichiro Takahashi
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.62518

Structure of bacterial phospholipid transporter MlaFEDB with substrate bound
Cited by: 42
Author(s): Nicolas Coudray, Georgia L. Isom, M.R. MacRae, Mariyah N. Saiduddin, Gira Bhabha, D.C. Ekiert
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.51492

Structural basis of substrate recognition by a polypeptide processing and secretion transporter
Cited by: 23
Author(s): Virapat Kieuvongngam, Paul Dominic B. Olinares, Anthony Palillo, Michael L. Oldham, Brian T. Chait, Jue Chen
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.49439

Decoding WW domain tandem-mediated target recognitions in tissue growth and cell polarity
Cited by: 33
Author(s): Zhijie Lin, Yang Zhou, Ruiling Xie, Zeyang Ji, Kun‐Liang Guan, Mingjie Zhang
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.33442

Decoding the centromeric nucleosome through CENP-N
Cited by: 98
Author(s): Satyakrishna Pentakota, Keda Zhou, Charlotte M. Smith, Stefano Maffini, Arsen Petrovic, Garry Morgan, John R. Weir, Ingrid R. Vetter, Andrea Musacchio, Karolin Luger
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.06074

Autoinhibition of Bruton's tyrosine kinase (Btk) and activation by soluble inositol hexakisphosphate
Cited by: 74
Author(s): Qi Wang, Erik Vogan, Laura M. Nocka, Connor Rosen, Julie A. Zorn, Stephen C. Harrison, John Kuriyan
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.52774

Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate
Cited by: 94
Author(s): Fei X, Tristan A Bell, Simon Jenni, Benjamin M. Stinson, T.A. Baker, Stephen C. Harrison, Robert T. Sauer
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.02375

AFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter
Cited by: 44
Author(s): Ursula Schulze‐Gahmen, Huasong Lu, Qiang Zhou, Tom Alber
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.43229

Structural basis of Ca2+-dependent activation and lipid transport by a TMEM16 scramblase
Cited by: 81
Author(s): Maria Falzone, Jan Rheinberger, B.C. Lee, Thasin Peyear, Linda Sasset, Ashleigh M. Raczkowski, Edward T. Eng, Annarita Di Lorenzo, Olaf S. Andersen, Crina M. Nimigean, Alessio Accardi
Software Mentions: 2
Published: almost 8 years ago

10.1128/JVI.02511-16

Structural Definition of Duck Major Histocompatibility Complex Class I Molecules That Might Explain Efficient Cytotoxic T Lymphocyte Immunity to Influenza A Virus
Cited by: 16
Author(s): Yanan Wu, Junya Wang, Shenggen Fan, Rong Chen, Yanjie Liu, Jianhua Zhang, Hongyu Yuan, Ruiying Liang, Nianzhi Zhang, Chun Xia
Software Mentions: 2
Published: over 9 years ago

10.1107/S1399004714001308

Automated identification of elemental ions in macromolecular crystal structures
Cited by: 37
Author(s): Nathaniel Echols, Nader Morshed, Pavel V. Afonine, Airlie J. McCoy, Mitchell D. Miller, Randy J. Read, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M117.780395

The crystal structure of mammalian inositol 1,3,4,5,6-pentakisphosphate 2-kinase reveals a new zinc-binding site and key features for protein function
Cited by: 7
Author(s): Elsa Franco-Echevarría, Julia Sanz‐Aparicio, Charles A. Brearley, Juana María González-Rubio, Beatriz González
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M117.797811

Discovery of a microbial transglutaminase enabling highly site-specific labeling of proteins
Cited by: 42
Author(s): Wojtek Steffen, Fu Chong Ko, Jigar Patel, Victor I. Lyamichev, Thomas Albert, Jörg Benz, M.G. Rudolph, Frank Bergmann, Thomas Streidl, Peter Kratzsch, Mara Boenitz-Dulat, Tobias Oelschlaegel, Michael Schraeml
Software Mentions: 2
Published: about 9 years ago

10.1074/jbc.M117.781948

Structure of the WipA protein reveals a novel tyrosine protein phosphatase effector from Legionella pneumophila
Cited by: 10
Author(s): Nikos Pinotsis, Gabriel Waksman
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M116.743948

The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans
Cited by: 34
Author(s): Aurore Labourel, Lucy I. Crouch, Joana L. A. Brás, Adam Jackson, Artur Rogowski, Joe Gray, Madhav P. Yadav, Bernard Henrissat, Carlos M. G. A. Fontes, Harry J. Gilbert, Shabir Najmudin, Arnaud Baslé, Fiona Cuskin
Software Mentions: 2
Published: about 10 years ago

10.1107/S2053230X16017891

The crystal structure of the endoglucanase Cel10, a family 8 glycosyl hydrolase fromKlebsiella pneumoniae
Cited by: 9
Author(s): Ayman Attigani, Lifang Sun, Qing Wang, Yadan Liu, Ding-Ping Bai, Shengping Li, Xiaohong Huang
Software Mentions: 2
Published: almost 10 years ago

10.1074/jbc.M116.748160

Ligand-bound Structures and Site-directed Mutagenesis Identify the Acceptor and Secondary Binding Sites of Streptomyces coelicolor Maltosyltransferase GlgE
Cited by: 11
Author(s): Karl Syson, Clare E. M. Stevenson, Farzana Miah, J. Elaine Barclay, Minhong Tang, Andrii Gorelik, Abdur Rashid, David M. Lawson, Stephen Bornemann
Software Mentions: 2
Published: about 10 years ago

10.1080/22221751.2021.1899770

The preclinical inhibitor GS441524 in combination with GC376 efficaciously inhibited the proliferation of SARS-CoV-2 in the mouse respiratory tract
Cited by: 33
Author(s): Yuejun Shi, Lei Shuai, Zhiyuan Wen, Chong Wang, Yuanyuan Yan, Zhe Jiao, Fenglin Guo, Zhen F. Fu, Huanchun Chen, Zhigao Bu, Guiqing Peng
Software Mentions: 2
Published: almost 6 years ago

10.1080/22221751.2020.1865840

Structure of the multiple functional domains from coronavirus nonstructural protein 3
Cited by: 8
Author(s): Mengxia Li, Gang Ye, Yu Si, Zhou Shen, Zhu Liu, Yuejun Shi, Shaobo Xiao, Zhen F. Fu, Guiqing Peng
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.ejmech.2018.04.035

Aminobenzothiazole derivatives stabilize the thermolabile p53 cancer mutant Y220C and show anticancer activity in p53-Y220C cell lines
Cited by: 52
Author(s): Matthias G. J. Baud, Matthias R. Bauer, Lorena Verduci, Felix A. Dingler, Ketan Patel, Debmalya Roy, A.C. Joerger, Alan R. Fersht
Software Mentions: 2
Published: over 8 years ago

10.15252/embr.202052325

NeutrobodyPlex—monitoring SARS‐CoV‐2 neutralizing immune responses using nanobodies
Cited by: 35
Author(s): Teresa R. Wagner, E. Ostertag, Philipp Kaiser, Marius Gramlich, Natalia Ruétalo, Daniel Junker, Julia Haering, Bjoern Traenkle, Matthias Becker, Alex Dulovic, H Schweizer, Stefan Nueske, Armin M. Scholz, Anne Zeck, Katja Schenke‐Layland, Annika Nelde, Monika Strengert, Juliane S. Walz, Georg Zocher, Thilo Stehle, Michael Schindler, Nicole Schneiderhan‐Marra, Ulrich Rothbauer
Software Mentions: 2
Published: over 5 years ago

10.1107/S0907444912017453

Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement withPrimeX
Cited by: 19
Author(s): Jeffrey A. Bell, Kenneth L. Ho, Ramy Farid
Software Mentions: 2
Published: over 14 years ago

10.3390/v11060504

Transcriptional Control and mRNA Capping by the GDP Polyribonucleotidyltransferase Domain of the Rabies Virus Large Protein
Cited by: 15
Author(s): Tomoaki Ogino, Todd Green
Software Mentions: 2
Published: over 7 years ago

10.15252/embr.201745680

Active site alanine mutations convert deubiquitinases into high‐affinity ubiquitin‐binding proteins
Cited by: 40
Author(s): Marie E. Morrow, Michael T. Morgan, Marcello Clerici, Kateřina Growková, Ming Yan, David Komander, Titia K. Sixma, Michal Šimíček, Cynthia Wolberger
Software Mentions: 2
Published: about 8 years ago

10.1074/jbc.M117.802587

Phosphorylation of human enhancer filamentation 1 (HEF1) stimulates interaction with Polo-like kinase 1 leading to HEF1 localization to focal adhesions
Cited by: 6
Author(s): Kyung Ho Lee, Jeong Ah Hwang, Sun Ok Kim, Jung Hee Kim, Sang Chul Shin, Eunice Eun Kyeong Kim, Kyung S. Lee, Kunsoo Rhee, Byeong Hwa Jeon, Jeong Kyu Bang, Hyunjoo Cha-Molstad, Nak-Kyun Soung, Jae Hyuk Jang, Sung-Kyun Ko, Hee Gu Lee, Jong Seog Ahn, Yongtae Kwon, Bo Yeon Kim
Software Mentions: 2
Published: almost 9 years ago

10.1021/acs.cgd.0c01608

Production of Cross-Linked Lipase Crystals at a Preparative Scale
Cited by: 10
Author(s): Raquel Fernández-Penas, Cristóbal Verdugo‐Escamilla, Sergio Martínez‐Rodríguez, José A. Gavira
Software Mentions: 2
Published: over 5 years ago

10.1016/j.csbj.2021.06.006

A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis
Cited by: 13
Author(s): P. Gupta, S.E. Thomas, Shaymaa A. Zaidan, Maria A. Pasillas, J. Cory-Wright, Víctor Sebastián-Pérez, Ailidh Burgess, Emma Cattermole, C. Meghir, Chris Abell, Anthony G. Coyne, William R. Jacobs, Tom L. Blundell, Sangeeta Tiwari, V. Mendes
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.dib.2017.10.051

Datasets, processing and refinement details for Mtb -AnPRT: inhibitor structures with various space groups
Cited by: 2
Author(s): G.L. Evans, Daniel P. Furkert, Nacim Abermil, Preeti Kundu, Katrina M. de Lange, E.J. Parker, Margaret A. Brimble, Edward N. Baker, J.S. Lott
Software Mentions: 2
Published: almost 9 years ago

10.1038/s42003-020-01640-7

Molecular basis of IRGB10 oligomerization and membrane association for pathogen membrane disruption
Cited by: 8
Author(s): Hyekyung Ha, Hye Lin Chun, So Yeon Lee, Jin Ho Jeong, Yeon-Gil Kim, Hyun Ho Park
Software Mentions: 2
Published: almost 6 years ago

10.1038/s42003-020-01208-5

Diversity in the intrinsic apoptosis pathway of nematodes
Cited by: 3
Author(s): Neil D. Young, Tiffany J Harris, Marco Evangelista, Sharon Tran, Merridee A. Wouters, Tatiana P. Soares da Costa, Nadia J. Kershaw, Robin B. Gasser, Brian J. Smith, Erinna F. Lee, W. Douglas Fairlie
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-020-0941-1

Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism
Cited by: 26
Author(s): Xia Yu, Xiaopan Gao, Keqing Zhu, Han Yin, Xu-Jian Mao, Justyna Aleksandra Wojdyla, Bo Qin, Hairong Huang, Meitian Wang, Yicheng Sun, Sheng Cui
Software Mentions: 2
Published: over 6 years ago

10.1080/10717544.2018.1428245

HSA-based multi-target combination therapy: regulating drugs’ release from HSA and overcoming single drug resistance in a breast cancer model
Cited by: 31
Author(s): Yanzi Gou, Zhenlei Zhang, Dongyang Li, Lei Zhao, Meiling Cai, Zhigang Sun, Yongping Li, Yao Zhang, Hina Khan, Hongbing Sun, Tao Wang, Hong Liang, Feng Yang
Software Mentions: 2
Published: almost 9 years ago

10.1038/s42003-020-01147-1

Molecular basis of the lipid-induced MucA-MucB dissociation in Pseudomonas aeruginosa
Cited by: 6
Author(s): Tao Li, Libang He, Changcheng Li, Mei Kang, Yingjie Song, Yuanfeng Zhu, Yanjiao Shen, Ninglin Zhao, Chang Zhao, Jing Yang, Qin Huang, Xingyu Mou, Aiping Tong, Jinliang Yang, Zhenling Wang, Chengjie Ji, Hong Li, Hong Tang, Rui Bao
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-021-01750-w

The structural basis of function and regulation of neuronal cotransporters NKCC1 and KCC2
Cited by: 43
Author(s): Sensen Zhang, Jun Zhou, Yuebin Zhang, Tianya Liu, Perrine Friedel, Wei Zhuo, Suma Somasekharan, Kasturi Roy, Laixing Zhang, Yang Liu, Xianbin Meng, Haiteng Deng, Wenwen Zeng, Guohui Li, Bliss Forbush, Maojun Yang
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-02326-4

Structure-based insights into evolution of rhodopsins
Cited by: 13
Author(s): Dmitrii Zabelskii, Natalia I. Dmitrieva, Oleksandr Volkov, Vitaly Shevchenko, Kirill Kovalev, Taras Balandin, Dmytro Soloviov, Roman Astashkin, Egor V. Zinovev, Alexey Alekseev, Ekaterina Round, Vitaly Polovinkin, Igor Chizhov, Andrey Rogachev, Ivan Okhrimenko, Valentin Borshchevskiy, Vladimir Chupin, Georg Büldt, Natalia Yutin, Ernst Bamberg, Eugene V. Koonin, Valentin Gordeliy
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-01739-5

Structure–function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis
Cited by: 2
Author(s): Hiroyuki Kajiura, Takumi Yoshizawa, Yuji Tokumoto, Nobuaki Suzuki, Shinya Takeno, Kanokwan Jumtee Takeno, Takuya Yamashita, Shun‐ichi Tanaka, Yoshinobu Kaneko, Kazuhito Fujiyama, Hideki Matsumura, Yasuhiro Nakazawa
Software Mentions: 2
Published: over 5 years ago

10.3390/cells8060570

An Emerin LEM-Domain Mutation Impairs Cell Response to Mechanical Stress
Cited by: 12
Author(s): Nada Essawy, Camille Samson, Ambre Petitalot, Sophie Moog, Anne Bigot, Isaline Herrada, Agathe Marcelot, Ana-Andreea Arteni, Catherine Coirault, Sophie Zinn‐Justin
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-019-0426-2

15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism
Cited by: 14
Author(s): Giancarlo Abis, Rebecca L. Charles, J. Kopec, Wyatt W. Yue, R. Andrew Atkinson, Tam T. Bui, Steven Lynham, Popova Sn, Yin-Biao Sun, Franca Fraternali, Philip Eaton, Maria R. Conte
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-020-01633-6

Elucidating the tunability of binding behavior for the MERS-CoV macro domain with NAD metabolites
Cited by: 3
Author(s): Meng-Hsuan Lin, Chao-Cheng Cho, Yi‐Chih Chiu, Chia‐Yu Chien, Yiping Huang, Chi‐Fon Chang, Chun‐Hua Hsu
Software Mentions: 2
Published: almost 6 years ago

10.15252/embj.2020105908

Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9
Cited by: 27
Author(s): Iven Winkelmann, Ryota Matsuoka, Pascal Meier, Denis Shutin, Chen‐Ou Zhang, Laura Orellana, Ricky Sexton, Michael Landreh, Carol V. Robinson, Oliver Beckstein, David Drew
Software Mentions: 2
Published: about 6 years ago

10.1074/jbc.M117.809657

Prodomain–growth factor swapping in the structure of pro-TGF-β1
Cited by: 29
Author(s): Bo Zhao, Shutong Xu, Xiao Dong, Chafen Lu, Timothy A. Springer
Software Mentions: 2
Published: over 8 years ago

10.1038/s41422-020-0363-0

CryoEM structure of the tegumented capsid of Epstein-Barr virus
Cited by: 17
Author(s): Zhihai Li, Xiao Zhang, Lili Dong, Jingjing Pang, Miao Xu, Qian Zhong, Mu‐Sheng Zeng, Xuekui Yu
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2020.108274

An Alternative Binding Mode of IGHV3-53 Antibodies to the SARS-CoV-2 Receptor Binding Domain
Cited by: 139
Author(s): Nicholas C. Wu, Meng Yuan, Hejun Liu, Chang-Chun David Lee, Xueyong Zhu, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 2
Published: about 6 years ago

10.1038/s41422-021-00514-9

Humoral immune response to circulating SARS-CoV-2 variants elicited by inactivated and RBD-subunit vaccines
Cited by: 109
Author(s): Yunlong Cao, Ayijiang Yisimayi, Yali Bai, Weijin Huang, Xiaofeng Li, Zhiying Zhang, Tianjiao Yuan, Ran An, Jing Wang, Tianhe Xiao, Shuo Du, Wenping Ma, Liyang Song, Yongzheng Li, Xiang Li, Weiliang Song, Jiajing Wu, Shuo Liu, Xuemei Li, Yonghong Zhang, Bin Su, Xuesong Guo, Yu‐Sheng Wei, Chuanping Gao, Nana Zhang, Yifei Zhang, Yang Dou, Xiaoyu Xu, Rui Shi, Lan Bai, Ronghua Jin, Yingmin Ma, Cheng‐Feng Qin, Youchun Wang, Yingmei Feng, Junyu Xiao, X. Sunney Xie
Software Mentions: 2
Published: over 5 years ago

10.1016/j.molcel.2018.08.039

Substrate Recognition and Autoinhibition in the Central Ribonuclease RNase E
Cited by: 35
Author(s): Katarzyna Bandyra, J.M. Wandzik, Ben F. Luisi
Software Mentions: 2
Published: about 8 years ago

10.1038/s41421-018-0037-y

Inward-facing conformation of l-ascorbate transporter suggests an elevator mechanism
Cited by: 9
Author(s): Ping Luo, Shengyang Dai, Jianwei Zeng, Jingliang Duan, Hui Shi, Jiawei Wang
Software Mentions: 2
Published: over 8 years ago

10.1038/celldisc.2016.44

A unified molecular mechanism for the regulation of acetyl-CoA carboxylase by phosphorylation
Cited by: 27
Author(s): Wei Jia, Yixiao Zhang, Tai-Yuan Yu, Kianoush Sadre-Bazzaz, M. Rudolph, Gabriele A. Amodeo, Lorraine S. Symington, Thomas Walz, Liang Tong
Software Mentions: 2
Published: almost 10 years ago

10.1038/cddis.2016.469

Structural insight into an evolutionarily ancient programmed cell death regulator – the crystal structure of marine sponge BHP2 bound to LB-Bak-2
Cited by: 23
Author(s): Sofia Caria, Mark G. Hinds, Marc Kvansakul
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41421-019-0101-2

Structural insights into DNA recognition by AimR of the arbitrium communication system in the SPbeta phage
Cited by: 11
Author(s): Zeyuan Guan, Kai Pei, Jing Wang, Yongqing Cui, Xiang Zhu, Xiang Su, Yuanbao Zhou, Delin Zhang, Chun Tang, Ping Yin, Zhu Liu, Tingting Zou
Software Mentions: 2
Published: over 7 years ago

10.1016/j.chom.2020.06.010

Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike
Cited by: 280
Author(s): Jiandong Huo, Yuguang Zhao, Jingshan Ren, Daming Zhou, Duyvesteyn Hme., H. Ginn, L. Carrique, Tomas Malinauskas, R.R. Ruza, Pranav N.M. Shah, Tiong Kit Tan, Pramila Rijal, Naomi Coombes, Kevin R. Bewley, Julia A. Tree, Julika Radecke, Neil G. Paterson, Piyasa Supasa, Juthathip Mongkolsapaya, Gavin Screaton, Miles W. Carroll, Alain Townsend, Elizabeth E. Fry, Raymond J. Owens, D.I. Stuart
Software Mentions: 2
Published: about 6 years ago

10.1107/S1399004715000152

Structure of Csd3 fromHelicobacter pylori, a cell shape-determining metallopeptidase
Cited by: 17
Author(s): Doo Ri An, Hyoun Sook Kim, Jieun Kim, Ha Na Im, Hye Jin Yoon, Ji Young Yoon, Jun Young Jang, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: over 11 years ago

10.1016/j.celrep.2018.05.046

Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design
Cited by: 52
Author(s): Kimmo Rantalainen, Zachary T. Berndsen, Sasha Murrell, Liwei Cao, Oluwarotimi Omorodion, Jonathan L. Torres, Mengyu Wu, Jeffrey C. Umotoy, Jeffrey Copps, Pascal Poignard, Elise Landais, James C. Paulson, Ian A. Wilson, Andrew B. Ward
Software Mentions: 2
Published: over 8 years ago

10.1016/j.celrep.2016.06.022

Structural Insights into Arl1-Mediated Targeting of the Arf-GEF BIG1 to the trans-Golgi
Cited by: 25
Author(s): Antonio Galindo, Nicolas Soler, Stephen H. McLaughlin, Myeong-Hee Yu, Roger L. Williams, Sean Munro
Software Mentions: 2
Published: over 10 years ago

10.3390/molecules26185554

Enabling Efficient Folding and High-Resolution Crystallographic Analysis of Bracelet Cyclotides
Cited by: 7
Author(s): Yen‐Hua Huang, Qingdan Du, Zhihao Jiang, G. J. King, Brett Collins, Conan K. Wang, David J. Craik
Software Mentions: 2
Published: about 5 years ago

10.1002/cbic.201300136

The Structure of Glycerol Trinitrate Reductase NerA fromAgrobacterium radiobacterReveals the Molecular Reason for Nitro‐ and Ene‐Reductase Activity in OYE Homologues
Cited by: 10
Author(s): Gustav Oberdorfer, Alexandra Binter, Silvia Wallner, Katharina Durchschein, Mélanie Hall, Kurt Faber, Peter Macheroux, Karl Gruber
Software Mentions: 2
Published: over 13 years ago

10.1107/S2059798316016910

Strategies for carbohydrate model building, refinement and validation
Cited by: 45
Author(s): Jon Agirre
Software Mentions: 2
Published: over 9 years ago

10.1038/s42003-020-01266-9

Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy
Cited by: 17
Author(s): Hyunjin Cho, Yuri Choi, Kyoung‐Wook Min, Jung Bae Son, Hyojin Park, Hyung Ho Lee, Seokhee Kim
Software Mentions: 2
Published: about 6 years ago

10.3390/molecules23071538

Crystal Structure of LSD1 in Complex with 4-[5-(Piperidin-4-ylmethoxy)-2-(p-tolyl)pyridin-3-yl]benzonitrile
Cited by: 18
Author(s): Hideaki Niwa, Shin Sato, Tomoko Hashimoto, Kenji Matsuno, Takashi Umehara
Software Mentions: 2
Published: over 8 years ago

10.1038/s42003-018-0236-y

The crystal structure of a tetrahydrofolate-bound dihydrofolate reductase reveals the origin of slow product release
Cited by: 19
Author(s): Heidi B. Cao, Mu Gao, Hongyi Zhou, Jeffrey Skolnick
Software Mentions: 2
Published: almost 8 years ago

10.1038/s42003-021-02473-8

The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon
Cited by: 4
Author(s): Yuya Taguchi, Tomohiro Yamasaki, Marie Ishikawa, Yuki Kawasaki, Ryuji Yukimura, Maki Mitani, Kunio Hirata, Daisuke Kohda
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-021-02068-3

Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin
Cited by: 5
Author(s): Miho Watanabe-Takahashi, Masakazu Tamada, Masuo Senda, M. Hibino, Eihan Shimizu, Akiko Okuta, Atsuo Miyazawa, Toshiya Senda, Kiyotaka Nishikawa
Software Mentions: 2
Published: over 5 years ago

10.1107/S2053230X19012172

Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking
Cited by: 3
Author(s): Eric Montemayor, Johanna M Virta, Lauren D. Hagler, Steven C. Zimmerman, Samuel E. Butcher
Software Mentions: 2
Published: about 7 years ago

10.1038/s42003-020-01412-3

Structural basis of superinfection exclusion by bacteriophage T4 Spackle
Cited by: 14
Author(s): Ke Shi, Justin Oakland, Fredy Kurniawan, Nicholas H. Moeller, Surajit Banerjee, Hideki Aihara
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2053230X18002236

Crystal structure of theMSMEG_4306gene product fromMycobacterium smegmatis
Cited by: 1
Author(s): Adarsh Kumar, Subramanian Karthikeyan
Software Mentions: 2
Published: over 8 years ago

10.1038/s42003-020-01223-6

Sequence specificity analysis of the SETD2 protein lysine methyltransferase and discovery of a SETD2 super-substrate
Cited by: 10
Author(s): Maren Kirstin Schuhmacher, Serap Beldar, Mina S Khella, Alexander Bröhm, Jan Ludwig, W. Tempel, Sara Weirich, Jinrong Min, Albert Jeltsch
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-020-01283-8

Structural role of essential light chains in the apicomplexan glideosome
Cited by: 8
Author(s): Samuel Pažický, Karthikeyan Dhamotharan, Karol Kaszuba, Haydyn D. T. Mertens, Tim‐Wolf Gilberger, Dmitri I. Svergun, Jan Kosiński, Ulrich Weininger, Christian Löw
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-018-0123-6

In situ serial crystallography for rapid de novo membrane protein structure determination
Cited by: 26
Author(s): Chia-Ying Huang, V. Oliéric, Nicole Howe, Rangana Warshamanage, T. Weinert, Ezequiel Panepucci, Lutz Vogeley, Shibom Basu, Kay Diederichs, Martin Caffrey, Meitian Wang
Software Mentions: 2
Published: about 8 years ago

10.1107/S1399004713033841

Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting
Cited by: 46
Author(s): Lei Chen, Tian Liu, Yong Zhou, Qi Chen, Xu Shen, Qing Yang
Software Mentions: 2
Published: over 12 years ago

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Papers Mentioning PHENIX 2,287