cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-51095-y

The C-terminal region of human plasma fetuin-B is dispensable for the raised-elephant-trunk mechanism of inhibition of astacin metallopeptidases
Cited by: 6
Author(s): Tibisay Guevara, Hagen Körschgen, Anna Cuppari, C. Schmitz, Michael Kuske, Irene Yiallouros, Julia Floehr, Willi Jahnen‐Dechent, Walter Stöcker, F. Xavier Gomis‐Rüth
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.ppat.1007476

Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress
Cited by: 10
Author(s): Alfredo J. Guerra, Ou Zhang, Constance M. Bahr, My Hang Huynh, James Delproposto, William Clay Brown, Z. Wawrzak, Nicole M. Koropatkin, Vern B. Carruthers
Software Mentions: 2
Published: almost 6 years ago

10.1107/S1600577518010354

High-speed raster-scanning synchrotron serial microcrystallography with a high-precision piezo-scanner
Cited by: 18
Author(s): Yuan Gao, Weihe Xu, Wuxian Shi, Alexei S. Soares, Jean Jakoncic, Stuart Myers, Bruno Martins, John M. Skinner, Qun Li, H. J. Bernstein, Seán McSweeney, Evgeny Nazaretski, Martin R. Fuchs
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2021.625808

Structural Basis of VSIG3: The Ligand for VISTA
Cited by: 11
Author(s): Xiaoxue Xie, Caiping Chen, Wenting Chen, Jingwei Jiang, Lanlan Wang, Tingting Li, Hongbin Sun, Jun Li
Software Mentions: 2
Published: over 3 years ago

10.1107/S1600577514026289

Radiation damage to nucleoprotein complexes in macromolecular crystallography
Cited by: 20
Author(s): C.S. Bury, Elspeth F. Garman, H. Ginn, Raimond B. G. Ravelli, Ian Carmichael, Geoff Kneale, J.E. McGeehan
Software Mentions: 2
Published: almost 10 years ago

10.1107/S1600577520014599

High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection
Cited by: 0
Author(s): Mikael Jensen, Viktor Ahlberg Gagnér, Juan Sanchez, Anders Bengtsson, Johanna Ekström, Tinna Björg Úlfarsdóttir, María-José García-Bonete, Andrius Jurgilaitis, David Kroon, Van Tuong Pham, Stefano Checcia, Hélène Coudert-Alteirac, Siawosch Schewa, Manfred Rößle, Helena Rodilla, Jan Stake, Vitali Zhaunerchyk, Jörgen Larsson, Gergely Katona
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-52964-2

Structures of GapR reveal a central channel which could accommodate B-DNA
Cited by: 9
Author(s): M.J. Tarry, C. Harmel, James Taylor, Gregory T. Marczynski, T.M. Schmeing
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53755-5

Structural basis for phospholipase A2-like toxin inhibition by the synthetic compound Varespladib (LY315920)
Cited by: 44
Author(s): Daniela P. Marchi-Salvador, Antoniel Augusto Severo Gomes, Wendy Bryan-Quirós, Julián Fernández, Matthew R. Lewin, José Marı́a Gutiérrez, Bruno Lomonte, Marcos R.M. Fontes
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-56557-x

Structure-Guided Design of a Fluorescent Probe for the Visualization of FtsZ in Clinically Important Gram-Positive and Gram-Negative Bacterial Pathogens
Cited by: 20
Author(s): Edgar Ferrer-González, Junnosuke Fujita, Takumi Yoshizawa, Julia M. Nelson, Alyssa Pilch, Elani Hillman, M. Ozawa, Natsuko Kuroda, Hassan Al-Tameemi, Jeffrey M. Boyd, Edmond J. LaVoie, Hideki Matsumura, Daniel S. Pilch
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-019-56257-6

High resolution structural and functional analysis of a hemopexin motif protein from Dolichos
Cited by: 0
Author(s): Sarita Chandan Sharma, Ashish Kumar, Sharad Vashisht, Dinakar M. Salunke
Software Mentions: 2
Published: almost 5 years ago

10.1107/S0909049513020803

High-resolution crystal structure ofStreptococcus pyogenesβ-NAD+glycohydrolase in complex with its endogenous inhibitor IFS reveals a highly water-rich interface
Cited by: 4
Author(s): Ji Young Yoon, Doo Ri An, Hye Jin Yoon, Hyoun Sook Kim, Sang Jae Lee, Ha Na Im, Jun Young Jang, Se Won Suh
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-019-56135-1

Shortening injection matrix for serial crystallography
Cited by: 29
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: almost 5 years ago

10.1107/S0909049513020773

Structural fluctuation observed in Z-DNA d(CGCGCG)2in the absence of divalent metal cations and polyamines
Cited by: 5
Author(s): Toshiyuki Chatake
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-019-56825-w

Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase
Cited by: 1
Author(s): Na Li, Ke Shi, Timsi Rao, Surajit Banerjee, Hideki Aihara
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-57419-7

Conformational changes in Apolipoprotein N-acyltransferase (Lnt)
Cited by: 6
Author(s): B. Wiseman, Martin Högbom
Software Mentions: 2
Published: almost 5 years ago

10.1128/JVI.01560-20

Orsay Virus CP-δ Adopts a Novel β-Bracelet Structural Fold and Incorporates into Virions as a Head Fiber
Cited by: 0
Author(s): Yusong R. Guo, Yingying Fan, Ying Zhou, Miao Jin, Jim L. Zhang, Hongbing Jiang, Matthew V. Holt, Tao Wang, Nicolas L. Young, David Wang, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: over 6 years ago

10.1128/JVI.00723-19

GII.13/21 Noroviruses Recognize Glycans with a Terminal β-Galactose via an Unconventional Glycan Binding Site
Cited by: 7
Author(s): Cong Xu, Xiaoman Sun, Jianxun Qi, Han-Bo Li, Wengang Chai, Qing Zhang, Hong Wang, Xiangyu Kong, Jiao Song, Lili Pang, Miao Jin, Dan-di Li, Ming Tan, Zhaojun Duan
Software Mentions: 2
Published: over 5 years ago

10.1128/JVI.01253-17

NS3 from Hepatitis C Virus Strain JFH-1 Is an Unusually Robust Helicase That Is Primed To Bind and Unwind Viral RNA
Cited by: 11
Author(s): Ting Zhou, Xiao‐Ming Ren, Rebecca L. Adams, Anna Marie Pyle
Software Mentions: 2
Published: almost 7 years ago

10.1128/JVI.00694-16

Crystal Structure of the Human Astrovirus Capsid Protein
Cited by: 32
Author(s): Yukimatsu Toh, Justin Harper, Kelly A. Dryden, Mark Yeager, Carlos F. Arias, Ernesto Méndez, Yizhi Jane Tao
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-020-58316-9

Comparative study of the interactions between fungal transcription factor nuclear localization sequences with mammalian and fungal importin-alpha
Cited by: 7
Author(s): Natália Elisa Bernardes, C.A. Fukuda, Tainá D. da Silva, H.C. Oliveira, Andrea C. de Barros, Thiago R. Dreyer, Maria Célia Bertolini, Marcos R.M. Fontes
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-60344-4

Distinct surfaces on Cdc5/PLK Polo-box domain orchestrate combinatorial substrate recognition during cell division
Cited by: 8
Author(s): A.W. Almawi, Laurence Langlois-Lemay, Stephen Boulton, Juan José Pulido González, Giuseppe Melacini, Damien D’Amours, Alba Guarné
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-61972-6

Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity
Cited by: 4
Author(s): Teruya Nakamura, Chie Hashikawa, Kohtaro Okabe, Yuya Yokote, Mami Chirifu, Sachiko Toma-Fukai, Narushi Nakamura, Mihoko Matsuo, Miho Kamikariya, Yoshinari Okamoto, Jin Gohda, Taishin Akiyama, Kentaro Semba, Shinji Ikemizu, Masami Otsuka, Jun Inoue, Yuriko Yamagata
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-62548-0

Structural basis for substrate and product recognition in human phosphoglucomutase-1 (PGM1) isoform 2, a member of the α-d-phosphohexomutase superfamily
Cited by: 9
Author(s): Paul Hoff Backe, Jon K. Laerdahl, Lene Svendsen Kittelsen, Bjørn Dalhus, Lars Mørkrid, Magnar Bjørås
Software Mentions: 2
Published: over 4 years ago

10.1128/JVI.03065-15

A Dimerization-Dependent Mechanism Drives the Endoribonuclease Function of Porcine Reproductive and Respiratory Syndrome Virus nsp11
Cited by: 26
Author(s): Yuejun Shi, Youwen Li, Yingying Lei, Gang Ye, Zhou Shen, Limeng Sun, Rui Luo, Dan Wang, Zhen F. Fu, Shaobo Xiao, Guiqing Peng
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1007944

Alternative conformations of a major antigenic site on RSV F
Cited by: 25
Author(s): Harrison G. Jones, Michael B. Battles, Chun-Chi Lin, Siro Bianchi, Davide Corti, Jason S. McLellan
Software Mentions: 2
Published: over 5 years ago

10.1107/S0021889811041161

iotbx.cif: a comprehensive CIF toolbox
Cited by: 539
Author(s): Richard J. Gildea, Luc J. Bourhis, Oleg V. Dolomanov, Ralf W. Grosse‐Kunstleve, Horst Puschmann, Paul D. Adams, Judith A. K. Howard
Software Mentions: 2
Published: about 13 years ago

10.1107/S1600576715010432

Programming new geometry restraints: parallelity of atomic groups
Cited by: 13
Author(s): Oleg Sobolev, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-65994-y

S92 phosphorylation induces structural changes in the N-terminus domain of human mitochondrial calcium uniporter
Cited by: 9
Author(s): Youngjin Lee, Jongseo Park, Gihwan Lee, Sanghwa Yoon, Choon Kee Min, Tae Kyun Kim, Toshiharu Yamamoto, Do Han Kim, Keun Woo Lee, Soo Hyun Eom
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-66480-1

Crystal structures of Uso1 membrane tether reveal an alternative conformation in the globular head domain
Cited by: 6
Author(s): Yoonyoung Heo, Hye‐Jin Yoon, Hyunjung Ko, Soonmin Jang, Hyung Ho Lee
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-65993-z

Single atom changes in newly synthesized HIV protease inhibitors reveal structural basis for extreme affinity, high genetic barrier, and adaptation to the HIV protease plasticity
Cited by: 10
Author(s): Haydar Bulut, Shin-ichiro Hattori, Hiromi Aoki-Ogata, Hironori Hayashi, Debananda Das, Manabu Aoki, David A. Davis, Kalapala Venkateswara Rao, Prasanth R. Nyalapatla, Arun K. Ghosh, Hiroaki Mitsuya
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008323

Structural basis of Fusarium myosin I inhibition by phenamacril
Cited by: 17
Author(s): Yuxin Zhou, Xuemei Zhou, Yuanping Gong, Yuanye Zhu, Xiaoman Cao, J.S. Brunzelle, H. Eric Xu, Mingguo Zhou, Karsten Melcher, Feng Zhang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008465

Structure of the protective nematode protease complex H-gal-GP and its conservation across roundworm parasites
Cited by: 13
Author(s): Charlotte A. Scarff, Rebecca Thompson, G. F. J. Newlands, A.H. Jamson, Christopher K. Kennaway, V.J. da Silva, Élida Mara Leite Rabelo, Chun Song, John Trinick, W.D. Smith, Stephen P. Muench
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008484

A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase
Cited by: 24
Author(s): Jiqin Wu, Han-Qing Ye, Qiuyan Zhang, Guangquan Lu, Bo Zhang, Peng Gong
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-69637-0

Crystal structure of the Rab33B/Atg16L1 effector complex
Cited by: 8
Author(s): Janina Metje-Sprink, Johannes Groffmann, Piotr Neumann, Brigitte Barg-Kues, Ralf Ficner, Karin Kühnel, Amanda M. Schalk, Beyenech Binotti
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-71347-6

Quantifying drug tissue biodistribution by integrating high content screening with deep-learning analysis
Cited by: 1
Author(s): Zhuyin Li, Youping Xiao, Peng Jia, Darren Locke, Derek Holmes, Lei Li, Shannon Hamilton, Emma N. Cook, Larnie Myer, Dana E. Vanderwall, Normand J. Cloutier, Akbar M. Siddiqui, Paul C. Whitehead, Richard W. Bishop, Lei Zhao, Mary Ellen Cvijic
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-71756-7

Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
Cited by: 12
Author(s): Yasuyuki Matoba, Masafumi Noda, Tomoki Yoshida, Kosuke Oda, Yuka Ezumi, Chiaki Yasutake, Hisae Izuhara-Kihara, Narandarai Danshiitsoodol, Toru Kumagai, Masanori Sugiyama
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-72368-x

Divalent cation-induced conformational changes of influenza virus hemagglutinin
Cited by: 5
Author(s): Jong Hyeon Seok, Hyojin Kim, Dan Bi Lee, Jeong Suk An, Eun Jeong Kim, Jihye Lee, Mi Sook Chung, Kyung Hyun Kim
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-72644-w

High-resolution crystal structure and biochemical characterization of a GH11 endoxylanase from Nectria haematococca
Cited by: 6
Author(s): Hina Andaleeb, Najeeb Ullah, Sven Falke, Markus Perbandt, H. Brognaro, Christian Betzel
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008619

Dynamic rotation of the protruding domain enhances the infectivity of norovirus
Cited by: 31
Author(s): Chihong Song, Reiko Takai‐Todaka, Motohiro Miki, Kei Haga, Akira Fujimoto, Ryoka Ishiyama, Kazuki Oikawa, Masahiro Yokoyama, Naoyuki Miyazaki, Katsunori Iwasaki, Kosuke Murakami, Kazuhiko Katayama, Kazuyoshi Murata
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-77706-7

The extracellular juncture domains in the intimin passenger adopt a constitutively extended conformation inducing restraints to its sphere of action
Cited by: 5
Author(s): Julia Weikum, Alina Kulakova, Giulio Tesei, Shogo Yoshimoto, Line Vejby Jægerum, Monika Schütz, Katsutoshi Hori, Marie Skepö, Pernille Harris, Jack C. Leo, J. Preben Morth
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-78877-z

Heat induces end to end repetitive association in P. furiosus l-asparaginase which enables its thermophilic property
Cited by: 7
Author(s): Pankaj Sharma, Rachana Tomar, Shivpratap Singh Yadav, Maulik D. Badmalia, Samir K. Nath, . Ashish, Bishwajit Kundu
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-78926-7

The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata
Cited by: 3
Author(s): Kenichi Kamata, Kimihiko Mizutani, Katsuya Takahashi, Roberta Marchetti, Alba Silipo, Christine Addy, Sam-Yong Park, Yuki Fujii, Hideaki Fujita, Tsuyoshi Konuma, Takahisa Ikegami, Yasuhiro Ozeki, J.R.H. Tame
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1008530

Cryo-EM structure of the fully-loaded asymmetric anthrax lethal toxin in its heptameric pre-pore state
Cited by: 16
Author(s): Claudia Antoni, Dennis Quentin, Alexander E. Lang, Klaus Aktories, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-81251-2

Analysis of insulin glulisine at the molecular level by X-ray crystallography and biophysical techniques
Cited by: 6
Author(s): Richard B. Gillis, H.V. Solomon, Lata Govada, Neil J. Oldham, Vlad Dinu, Shahwar I. Jiwani, Philemon Gyasi-Antwi, Frank Coffey, Andy Meal, Paul S. Morgan, Stephen E. Harding, John R. Helliwell, Naomi E. Chayen, Gary G. Adams
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83196-y

Mechanism of karyopherin-β2 binding and nuclear import of ALS variants FUS(P525L) and FUS(R495X)
Cited by: 27
Author(s): Abner Gonzalez, Taro Mannen, Tolga Çağatay, Ayano Fujiwara, Hideki Matsumura, Ashley Niesman, Chad A. Brautigam, Yuh Min Chook, Takumi Yoshizawa
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.00326

The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding
Cited by: 8
Author(s): Sara Gómez, Javier Querol-García, G. Sanchez-Barron, Marta Subías, Alex González-Alsina, V. Franco-Hidalgo, Sebastián Albertí, Santiago Rodrı́guez de Córdoba, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84373-9

A SPRY1 domain cardiac ryanodine receptor variant associated with short-coupled torsade de pointes
Cited by: 8
Author(s): Zahia Touat-Hamici, Malorie Blancard, Ruijing Ma, Lei Lin, Yasmine Iddir, Isabelle Denjoy, Antoine Leenhardt, Zhiguang Yuchi, Pascale Guicheney
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91090-w

An alternative domain-swapped structure of the Pyrococcus horikoshii PolII mini-intein
Cited by: 1
Author(s): Jennie E. Williams, Mario V. Jaramillo, Li Zhong, Jing Zhao, Qianqian Wang, Hongmin Li, Kenneth V. Mills
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92687-x

Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography
Cited by: 15
Author(s): Ki Hyun Nam, Jihan Kim, Yunje Cho
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92604-2

A new non-classical fold of varroa odorant-binding proteins reveals a wide open internal cavity
Cited by: 4
Author(s): Béatrice Amigues, Jianqing Zhu, Anaïs Gaubert, Simona Arena, Giovanni Renzone, Philippe Leone, Isabella Maria Fischer, Harald Paulsen, Wolfgang Knoll, Andrea Scaloni, Alain Roussel, Christian Cambillau, Paolo Pelosi
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-95236-8

Structural insight into host plasma membrane association and assembly of HIV-1 matrix protein
Cited by: 6
Author(s): Halilibrahim Çi̇ftçi̇, Hiroshi Tateishi, Kotaro Koiwai, Ryoko Koga, Kensaku Anraku, Kazuaki Monde, Çağdaş Dağ, Ebru Destan, Büşra Yüksel, Esra Ayan, Günseli Yildirim, Merve Yigin, Fatma Betül Ertem, Alaleh Shafiei, Ömür Güven, Sabri O. Besler, Raymond G. Sierra, Chun Hong Yoon, Zhen Su, Mengling Liang, Burçin Acar, Türkan Haliloǧlu, Masami Otsuka, Fumiaki Yumoto, Mikako Fujita, Toshiya Senda, Hasan DeMi̇rci̇
Software Mentions: 2
Published: over 3 years ago

10.1126/science.abe6230

Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape
Cited by: 271
Author(s): Paul Koenig, Hrishikesh Das, Hejun Liu, Beate M. Kümmerer, Florian N. Gohr, Lea-Marie Jenster, Lisa Dominica Jacoba Schiffelers, Yonas Mehari Tesfamariam, Miki Uchima, Jennifer Deborah Wuerth, Karl Gatterdam, Natalia Ruétalo, Maria H Christensen, Caroline I. Fandrey, Sabine Normann, Jan M. P. Tödtmann, Steffen Pritzl, Leo Hanke, Jannik Boos, Meng Yuan, Xueyong Zhu, Jonathan L. Schmid-Burgk, Hiroki Kato, Michael Schindler, Ian A. Wilson, Matthias Geyer, Kerstin U. Ludwig, Bengt Hållberg, Nicholas C. Wu, Florian I. Schmidt
Software Mentions: 2
Published: almost 4 years ago

10.1073/pnas.1811580115

Structure and architecture of immature and mature murine leukemia virus capsids
Cited by: 87
Author(s): Kun Qu, Bärbel Glass, Michal Doležal, F.K.M. Schur, Brice Murciano, Alan Rein, Michaela Rumlová, Tomáš Ruml, Hans‐Georg Kräusslich, John Briggs
Software Mentions: 2
Published: almost 6 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: over 5 years ago

10.1063/1.4948539

Structural dynamics of a methionine γ-lyase for calicheamicin biosynthesis: Rotation of the conserved tyrosine stacking with pyridoxal phosphate
Cited by: 4
Author(s): Heidi B. Cao, Kemin Tan, Fengbin Wang, L. Bigelow, Ragothaman M. Yennamalli, R. Jedrzejczak, G. Babnigg, C.A. Bingman, A. Joachimiak, Madan K. Kharel, Shanteri Singh, Jon S. Thorson, George N. Phillips
Software Mentions: 2
Published: over 8 years ago

10.1063/1.5086436

Time-resolved x-ray crystallography capture of a slow reaction tetrahydrofolate intermediate
Cited by: 4
Author(s): Heidi B. Cao, Jeffrey Skolnick
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: almost 7 years ago

10.1073/pnas.1921245117

Ancient MAPK ERK7 is regulated by an unusual inhibitory scaffold required for Toxoplasma apical complex biogenesis
Cited by: 37
Author(s): Peter Back, William O’Shaughnessy, Andy S Moon, Pravin S Dewangan, Xiaoyu Hu, Jihui Sha, James A. Wohlschlegel, Peter J. Bradley, Michael L. Reese
Software Mentions: 2
Published: over 4 years ago

10.1016/j.str.2012.04.012

Structural Insights into the Role of Domain Flexibility in Human DNA Ligase IV
Cited by: 43
Author(s): Takashi Ochi, Qian Wu, Dimitri Y. Chirgadze, J. Günter Grossmann, Victor M. Bolaños-García, Tom L. Blundell
Software Mentions: 2
Published: over 12 years ago

10.1073/pnas.2006231117

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6
Cited by: 35
Author(s): Ziming Yuan, Sarah Schneider, Thomas Dodd, Alberto Riera, Lin Bai, Yan Cheng, Marta Barbon, Indiana Magdalou, Ivaylo Ivanov, Bruce Stillman, Li H, Christian Speck
Software Mentions: 2
Published: over 4 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: over 3 years ago

10.1016/j.str.2013.06.028

A Structure of a Collagen VI VWA Domain Displays N and C Termini at Opposite Sides of the Protein
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Author(s): Ann-Kathrin A. Becker, Halina Mikolajek, Mats Paulsson, Raimund Wagener, Jörn M. Werner
Software Mentions: 2
Published: almost 11 years ago

10.1016/j.str.2014.04.015

Structure of the LdcB LD-Carboxypeptidase Reveals the Molecular Basis of Peptidoglycan Recognition
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Author(s): C.N. Hoyland, Christine Aldridge, Robert M. Cleverley, Marie Clémence Duchêne, G. Minasov, O. Onopriyenko, Karzan R. Sidiq, P.J. Stogios, W.F. Anderson, Richard A. Daniel, Alexei Savchenko, Waldemar Vollmer, Richard J. Lewis
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2019.02079

A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacterium Pseudomonas species AP–3
Cited by: 3
Author(s): Yanjuan Chen, Yiping Chen, Hua Jiang, Deren Lu, Tingting Hu, Gang Bi, Yuping Ran, Bin Yu, Hao Dong, Dan Su
Software Mentions: 2
Published: about 5 years ago

10.1073/pnas.2014896117

The SERCA residue Glu340 mediates interdomain communication that guides Ca 2+ transport
Cited by: 11
Author(s): Maxwell M. G. Geurts, Johannes Clausen, Bertrand Arnou, Cédric Montigny, Guillaume Lenoir, Robin A. Corey, Christine Jaxel, Jesper Møller, Poul Nissen, Jens Peter Andersen, Marc le Maire, Maike Bublitz
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.jfluchem.2021.109804

Fluorinated derivatives of pyridine-2,4-dicarboxylate are potent inhibitors of human 2-oxoglutarate dependent oxygenases
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Author(s): Lennart Brewitz, Yu Nakashima, Anthony Tumber, E. Salah, Christopher J. Schofield
Software Mentions: 2
Published: over 3 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
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Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: about 11 years ago

10.1073/pnas.2020486118

Early-stage dynamics of chloride ion–pumping rhodopsin revealed by a femtosecond X-ray laser
Cited by: 35
Author(s): Ji Hye Yun, Xuanxuan Li, Jianing Yue, Jae Hyun Park, Zeyu Jin, Chufeng Li, Hao Hu, Yingchen Shi, Suraj Pandey, Sergio Carbajo, Sébastien Boutet, Mark S. Hunter, Mao Liang, Raymond G. Sierra, Thomas J Lane, Liang Zhou, Uwe Weierstall, Nadia A. Zatsepin, Mio Ohki, J.R.H. Tame, Sam Yong Park, John C. H. Spence, Wenkai Zhang, Marius Schmidt, Weontae Lee, Haiguang Liu
Software Mentions: 2
Published: over 3 years ago

10.1002/2211-5463.12644

Structural insights into interactions between viral suppressor of <scp>RNA</scp> silencing protein p19 mutants and small <scp>RNA</scp>s
Cited by: 5
Author(s): Dana V. Foss, N.T. Schirle, Ian J. MacRae, John Paul Pezacki
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: almost 11 years ago

10.1073/pnas.2101349118

Periscope Proteins are variable-length regulators of bacterial cell surface interactions
Cited by: 11
Author(s): Fiona Whelan, Aleix Lafita, James Gilburt, Clément Dégut, Samuel C. Griffiths, Huw T. Jenkins, Alexander N. St John, Emanuele Paci, James Moir, Michael J. Plevin, Christoph G. Baumann, Alex Bateman, Jennifer R. Potts
Software Mentions: 2
Published: over 3 years ago

10.1021/acs.jmedchem.1c00048

Sustainable Drug Discovery of Multi-Target-Directed Ligands for Alzheimer’s Disease
Cited by: 53
Author(s): Michele Rossi, Michela Freschi, Luciana de Camargo Nascente, Alessandra Salerno, Sarah de Melo Viana Teixeira, Florian Nachon, Fabien Chantegreil, Ondřej Soukup, Lukáš Prchal, Marco Malaguti, Christian Bergamini, Manuela Bartolini, Cristina Angeloni, Silvana Hrelia, Luiz Antônio Soares Romeiro, María Laura Bolognesi
Software Mentions: 2
Published: over 3 years ago

10.1021/acs.jmedchem.0c02207

Targeting the FtsZ Allosteric Binding Site with a Novel Fluorescence Polarization Screen, Cytological and Structural Approaches for Antibacterial Discovery
Cited by: 10
Author(s): Sonia Huecas, Lidia Araújo‐Bazán, Federico M. Ruiz, Laura B. Ruíz-Avila, R. Fernando Martínez, Andrea Escobar-Peña, Marta Artola, Henar Vázquez-Villa, Mar Martín‐Fontecha, Carlos Fernández‐Tornero, María L. López‐Rodríguez, José Manuel Andreu
Software Mentions: 2
Published: over 3 years ago

10.1021/acs.jmedchem.1c00663

Xanthine Derivatives Reveal an Allosteric Binding Site in Methylenetetrahydrofolate Dehydrogenase 2 (MTHFD2)
Cited by: 7
Author(s): Lung-Chun Lee, Yi-Hui Peng, Hsin-Huei Chang, Tsu Hsu, Chih Heng Lu, Chiung‐Shiann Huang, Ching-Cheng Hsueh, Fang-Chun Kung, Ching‐Chuan Kuo, Weir‐Torn Jiaang, Su-Ying Wu
Software Mentions: 2
Published: over 3 years ago

10.1073/pnas.2101496118

Structure of autoinhibited Akt1 reveals mechanism of PIP3-mediated activation
Cited by: 29
Author(s): Linda Truebestein, Harald Hornegger, Dorothea Anrather, Markus Hartl, Kaelin D Fleming, Jordan T B Stariha, Els Pardon, Jan Steyaert, John E. Burke, Thomas A. Leonard
Software Mentions: 2
Published: over 3 years ago

10.1016/j.jmb.2013.03.019

Structure of the Tubulin/FtsZ-Like Protein TubZ from Pseudomonas Bacteriophage ΦKZ
Cited by: 30
Author(s): C.H.S. Aylett, Thierry Izoré, Linda Amos, Jan Löwe
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jmb.2018.08.027

Molecular Basis for Immunity Protein Recognition of a Type VII Secretion System Exported Antibacterial Toxin
Cited by: 24
Author(s): Timothy A. Klein, Manuel Pazos, Michael G. Surette, Waldemar Vollmer, John C. Whitney
Software Mentions: 2
Published: about 6 years ago

10.1016/j.jmb.2011.11.007

Structure and Kinetic Stability of the p63 Tetramerization Domain
Cited by: 26
Author(s): Eviatar Natan, A.C. Joerger
Software Mentions: 2
Published: almost 13 years ago

10.1073/pnas.2111172118

DNA-encoded chemistry technology yields expedient access to SARS-CoV-2 M pro inhibitors
Cited by: 31
Author(s): Srinivas Chamakuri, Shuo Lu, Melek N. Ucisik, Kurt M. Bohren, Ying-Chu Chen, Huang-Chi Du, John C. Faver, Ravikumar Jimmidi, Li Feng, Jianyuan Li, Pranavanand Nyshadham, Stephen Palmer, Jeroen Pollet, Xuan Qin, Shannon E. Ronca, Banumathi Sankaran, Kiran Sharma, Zhi Tan, Leroy Versteeg, Zhifeng Yu, Martin M. Matzuk, Timothy Palzkill, Damian W. Young
Software Mentions: 2
Published: about 3 years ago

10.1016/j.jmb.2013.05.024

Characterization of 14-3-3-ζ Interactions with Integrin Tails
Cited by: 29
Author(s): Roman Bonet, Ioannis Vakonakis, Iain D. Campbell
Software Mentions: 2
Published: about 11 years ago

10.1007/s13238-014-0087-3

Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71
Cited by: 83
Author(s): Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang, Lin Jiao, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe Rao
Software Mentions: 2
Published: over 10 years ago

10.1016/j.jmb.2011.10.024

Crystal Structure of the VapBC Toxin–Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly
Cited by: 70
Author(s): Christian Dienemann, Andreas Bøggild, Kristoffer Skovbo Winther, Kenn Gerdes, D.E. Brodersen
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.jmb.2015.07.014

Structures of the Ultra-High-Affinity Protein–Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa
Cited by: 25
Author(s): Amar Joshi, Rhys Grinter, Inokentijs Josts, Sabrina Chen, Justyna Aleksandra Wojdyla, E.D. Lowe, Renata Kaminska, Connor Sharp, Laura C. McCaughey, A.W. Roszak, Richard J. Cogdell, Olwyn Byron, Daniel Walker, Colin Kleanthous
Software Mentions: 2
Published: over 9 years ago

10.1007/s13238-014-0038-z

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII
Cited by: 4
Author(s): Wei Zhuo, Xuhui Lai, Liqing Zhang, Siu-Hong Chan, Fengjuan Li, Zhenyu Zhu, Maojun Yang, Dapeng Sun
Software Mentions: 2
Published: over 10 years ago

10.1111/febs.15601

Angiotensin‐converting enzyme open for business: structural insights into the subdomain dynamics
Cited by: 16
Author(s): Gyles E. Cozier, Lizelle Lubbe, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: about 4 years ago

10.1016/j.jmb.2019.10.005

Paratope Duality and Gullying are Among the Atypical Recognition Mechanisms Used by a Trio of Nanobodies to Differentiate Ebolavirus Nucleoproteins
Cited by: 4
Author(s): Laura J. Sherwood, Alexander B. Taylor, P. John Hart, Andrew Hayhurst
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jmb.2010.01.035

Structural Basis of Substrate Binding in WsaF, a Rhamnosyltransferase from Geobacillus stearothermophilus
Cited by: 22
Author(s): Kerstin Steiner, Gregor Hagelueken, Paul Messner, Christina Schäffer, James H. Naismith
Software Mentions: 2
Published: over 14 years ago

10.1007/s13238-015-0163-3

Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 Å resolution
Cited by: 61
Author(s): Shishang Dong, Peng Yang, Guo‐Bang Li, Baocheng Liu, Wenming Wang, Xiang Liu, Xia Bo-ran, Cheng Yang, Zhiyong Lou, Yu Guo, Zihe Rao
Software Mentions: 2
Published: over 9 years ago

10.1016/j.jmb.2015.01.012

Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme
Cited by: 21
Author(s): Wenyuan Liang, Min Ren, Fan Zhao, Wei-Jen Tang
Software Mentions: 2
Published: over 9 years ago

10.1016/j.jmb.2011.03.047

Interaction of the p53 DNA-Binding Domain with Its N-Terminal Extension Modulates the Stability of the p53 Tetramer
Cited by: 79
Author(s): Eviatar Natan, Çetin Baloğlu, Kevin Pagel, Stefan Freund, Nina Morgner, Carol V. Robinson, Alan R. Fersht, A.C. Joerger
Software Mentions: 2
Published: over 13 years ago

10.1016/j.jmb.2009.07.026

Crystal Structures of Wzb of Escherichia coli and CpsB of Streptococcus pneumoniae, Representatives of Two Families of Tyrosine Phosphatases that Regulate Capsule Assembly
Cited by: 69
Author(s): Gregor Hagelueken, Hexian Huang, Iain L. Mainprize, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: about 15 years ago

10.1107/S1399004714001308

Automated identification of elemental ions in macromolecular crystal structures
Cited by: 37
Author(s): Nathaniel Echols, Nader Morshed, Pavel V. Afonine, Airlie J. McCoy, Mitchell D. Miller, Randy J. Read, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M117.780395

The crystal structure of mammalian inositol 1,3,4,5,6-pentakisphosphate 2-kinase reveals a new zinc-binding site and key features for protein function
Cited by: 7
Author(s): Elsa Franco-Echevarría, Julia Sanz‐Aparicio, Charles A. Brearley, Juana María González-Rubio, Beatriz González
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.M117.797811

Discovery of a microbial transglutaminase enabling highly site-specific labeling of proteins
Cited by: 42
Author(s): Wojtek Steffen, Fu Chong Ko, Jigar Patel, Victor I. Lyamichev, Thomas Albert, Jörg Benz, M.G. Rudolph, Frank Bergmann, Thomas Streidl, Peter Kratzsch, Mara Boenitz-Dulat, Tobias Oelschlaegel, Michael Schraeml
Software Mentions: 2
Published: about 7 years ago

10.1074/jbc.M117.781948

Structure of the WipA protein reveals a novel tyrosine protein phosphatase effector from Legionella pneumophila
Cited by: 10
Author(s): Nikos Pinotsis, Gabriel Waksman
Software Mentions: 2
Published: over 7 years ago

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