cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1107/S2059798315023116

Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects
Cited by: 11
Author(s): Christian Reichen, Chaithanya Madhurantakam, Simon Hansen, Markus G. Grütter, Andreas Plückthun, Peer R. E. Mittl
Software Mentions: 2
Published: over 9 years ago

10.1042/BSR20193360

The Trp triad within the V-domain of the receptor for advanced glycation end products modulates folding, stability and ligand binding
Cited by: 2
Author(s): Venkata S.K. Indurthi, Jaime L. Jensen, Estelle Leclerc, Sangita C. Sinha, Christopher L. Colbert, Stefan Vetter
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0191610

Crystal structure of a UDP-GlcNAc epimerase for surface polysaccharide biosynthesis in Acinetobacter baumannii
Cited by: 1
Author(s): Bhumika S. Shah, Heather E. Ashwood, S.J. Harrop, Daniel N. Farrugia, Ian T. Paulsen, Bridget C. Mabbutt
Software Mentions: 2
Published: over 7 years ago

10.1107/S1399004715017927

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines
Cited by: 104
Author(s): U. Zander, Gleb Bourenkov, А. Н. Попов, Daniele de Sanctis, Olof Svensson, A.A. McCarthy, Ekaterina Round, Valentin Gordeliy, Christoph Mueller-Dieckmann, Gordon A. Leonard
Software Mentions: 2
Published: over 9 years ago

10.1186/s13068-019-1449-0

An actinobacteria lytic polysaccharide monooxygenase acts on both cellulose and xylan to boost biomass saccharification
Cited by: 30
Author(s): Thamy Lívia Ribeiro Corrêa, Atílio Tomazini Júnior, L. D. Wolf, Marcos Silveira Buckeridge, Leandro Vieira dos Santos, Mário Tyago Murakami
Software Mentions: 2
Published: about 6 years ago

10.1107/S2059798319010027

Structural comparison of protiated, H/D-exchanged and deuterated human carbonic anhydrase IX
Cited by: 11
Author(s): Katarina Koruza, Bénédicte Lafumat, Maria Nyblom, Brian P. Mahon, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: almost 6 years ago

10.1042/BCJ20160791

Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain
Cited by: 39
Author(s): Ni Tien, Antreas C. Kalli, Fiona B. Naughton, Luke A. Yates, Omar Naneh, Mirijam Kozorog, Gregor Anderluh, Mark S. P. Sansom, Robert J.C. Gilbert
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0200387

Discovery of fragments that target key interactions in the signal recognition particle (SRP) as potential leads for a new class of antibiotics
Cited by: 8
Author(s): Camilla Faoro, Lorna Wilkinson-White, Ann H. Kwan, Sandro F. Ataide
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0006820

The Crystal Structure of the Escherichia coli Autoinducer-2 Processing Protein LsrF
Cited by: 17
Author(s): Zamia Diaz, Karina B. Xavier, Stephen T. Miller
Software Mentions: 2
Published: almost 16 years ago

10.1186/s13068-017-1009-4

Determination of the native features of the exoglucanase Cel48S from Clostridium thermocellum
Cited by: 21
Author(s): Yajun Li, Shiyue Liu, Sheng Dong, Renmin Li, Yingang Feng, Qiu Cui
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0020420

VPS29 Is Not an Active Metallo-Phosphatase but Is a Rigid Scaffold Required for Retromer Interaction with Accessory Proteins
Cited by: 52
Author(s): James Swarbrick, Daniel Shaw, Sandeep Chhabra, Rajesh Ghai, Eugene Valkov, Suzanne J. Norwood, Matthew N. Seaman, Brett M. Collins
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0064901

Conserved Inhibitory Mechanism and Competent ATP Binding Mode for Adenylyltransferases with Fic Fold
Cited by: 33
Author(s): A. Goepfert, Frédéric V. Stanger, Christoph Dehio, Tilman Schirmer
Software Mentions: 2
Published: about 12 years ago

10.1042/BCJ20180867

Solution structures and biophysical analysis of full-length group A PAKs reveal they are monomeric and auto-inhibited in cis
Cited by: 10
Author(s): F.J. Sorrell, Lena Marie Kilian, J.M. Elkins
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0224689

Structural analysis of the manganese transport regulator MntR from Bacillus halodurans in apo and manganese bound forms
Cited by: 2
Author(s): Myeong Yeon Lee, Jun Young Lee, Hyun Kyu Joo, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798319009574

Biochemical and structural explorations of α-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction
Cited by: 4
Author(s): Hsien‐Wei Yeh, Kuan Hung Lin, S.Y. Lyu, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0221226

Structural and biochemical studies of an NB-ARC domain from a plant NLR immune receptor
Cited by: 39
Author(s): John F. C. Steele, Richard K. Hughes, Mark J. Banfield
Software Mentions: 2
Published: almost 6 years ago

10.1107/S1399004715018519

Sent packing: protein engineering generates a new crystal form ofPseudomonas aeruginosaDsbA1 with increased catalytic surface accessibility
Cited by: 5
Author(s): Róisín M. McMahon, M. Coincon, Stephanie Tay, Begoña Heras, Craig J. Morton, M.J. Scanlon, Jennifer L. Martin
Software Mentions: 2
Published: over 9 years ago

10.1107/S139900471501857X

Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Cited by: 50
Author(s): Takanori Nakane, Changyong Song, Mamoru Suzuki, Eriko Nango, Jun Kobayashi, Tetsuya Masuda, Shiro Inoue, Eiichi Mizohata, Toru Nakatsu, Tomoyuki Tanaka, Rie Tanaka, Tatsuro Shimamura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, So Iwata, Michihiro Sugahara
Software Mentions: 2
Published: over 9 years ago

10.1107/S2059798319006831

Structural and functional characterization of CMP-N-acetylneuraminate synthetase fromVibrio cholerae
Cited by: 1
Author(s): Sucharita Bose, Debayan Purkait, Deepthi Joseph, Vinod Nayak, Ramaswamy Subramanian
Software Mentions: 2
Published: about 6 years ago

10.26508/lsa.202000873

A conserved PI(4,5)P2–binding domain is critical for immune regulatory function of DOCK8
Cited by: 8
Author(s): Tetsuya Sakurai, Mutsuko Kukimoto-Niino, Kazufumi Kunimura, Nana Yamane, Daiji Sakata, Ryosuke Aihara, Tomoharu Yasuda, Shigeyuki Yokoyama, Mikako Shirouzu, Yoshihiro Fukui, Takehito Uruno
Software Mentions: 2
Published: over 4 years ago

10.26508/lsa.202000776

Structure of human Dispatched-1 provides insights into Hedgehog ligand biogenesis
Cited by: 22
Author(s): Hongwen Chen, Yang Liu, Xiaochun Li
Software Mentions: 2
Published: about 5 years ago

10.1107/S2059798318013347

Improving the accuracy and resolution of neutron crystallographic data by three-dimensional profile fitting of Bragg peaks in reciprocal space
Cited by: 23
Author(s): Brendan Sullivan, Rick Archibald, Patricia S. Langan, Holger Dobbek, Martin Bommer, Robert L. McFeeters, Leighton Coates, Xiaoping Wang, Franz X. Gallmeier, J.M. Carpenter, V. E. Lynch, Paul Langan
Software Mentions: 2
Published: over 6 years ago

10.1107/S2059798318017047

The crystal structure of theN-acetylglucosamine 2-epimerase fromNostocsp. KVJ10 reveals the true dimer
Cited by: 5
Author(s): Marie Josée Haglund Halsør, U. Rothweiler, Bjørn Altermark, Inger Lin Uttakleiv Ræder
Software Mentions: 2
Published: over 6 years ago

10.1016/j.matbio.2017.02.002

Structural and functional analysis of two small leucine-rich repeat proteoglycans, fibromodulin and chondroadherin
Cited by: 31
Author(s): Patricia Paracuellos, Sebastian Kalamajski, Arkadiusz Bonna, Dominique Bihan, Richard W. Farndale, Erhard Hohenester
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0032336

Myelin 2′,3′-Cyclic Nucleotide 3′-Phosphodiesterase: Active-Site Ligand Binding and Molecular Conformation
Cited by: 31
Author(s): Matti Myllykoski, Arne Raasakka, Huijong Han, Petri Kursula
Software Mentions: 2
Published: over 13 years ago

10.1107/S205979831801519X

Iron–sulfur clusters have no right angles
Cited by: 15
Author(s): Nigel W. Moriarty, Paul D. Adams
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0154190

X-Ray Crystal Structure of the Full Length Human Chitotriosidase (CHIT1) Reveals Features of Its Chitin Binding Domain
Cited by: 32
Author(s): Firas Fadel, Yuguang Zhao, A. Cousido-Siah, Francesc Xavier Ruiz, A. Mitschler, A. Podjarny
Software Mentions: 2
Published: over 9 years ago

10.1186/s12934-019-1190-1

Structural and functional characterization of a novel cold-active S-formylglutathione hydrolase (SfSFGH) homolog from Shewanella frigidimarina, a psychrophilic bacterium
Cited by: 11
Author(s): Chang Woo Lee, Woo-Kyoung Yoo, Sunha Park, Ly Le, Chang-Sung Jeong, Bum Han Ryu, Seung Chul Shin, Han-Woo Kim, Hyun Park, Kyeong Kyu Kim, T. Doohun Kim, Jun Hyuck Lee
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2059798318005764

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation
Cited by: 6
Author(s): Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: about 7 years ago

10.1016/j.cell.2019.12.006

In Situ Structure of an Intact Lipopolysaccharide-Bound Bacterial Surface Layer
Cited by: 73
Author(s): Andriko von Kügelgen, Haiping Tang, Gail G. Hardy, Danguole Kureisaite-Ciziene, Yves V. Brun, Phillip J. Stansfeld, Carol V. Robinson, Tanmay A. M. Bharat
Software Mentions: 2
Published: over 5 years ago

10.1107/S0907444911014302

Structure-based design of a disulfide-linked oligomeric form of the simian virus 40 (SV40) large T antigen DNA-binding domain
Cited by: 7
Author(s): Gretchen Meinke, Paul J. Phelan, Amélie Fradet-Turcotte, Jacques Archambault, Peter A. Bullock
Software Mentions: 2
Published: about 14 years ago

10.1107/S1399004714018732

Structural basis for the recognition of muramyltripeptide byHelicobacter pyloriCsd4, a<scp>D</scp>,<scp>L</scp>-carboxypeptidase controlling the helical cell shape
Cited by: 19
Author(s): Hyoun Sook Kim, Jieun Kim, Ha Na Im, Doo Ri An, Mijoon Lee, Dušan Hesek, Shahriar Mobashery, Jin Young Kim, Kun Cho, Hye Jin Yoon, Byung Woo Han, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: almost 11 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of Escherichia coli dihydrofolate reductase complexed with folate and NADP+
Cited by: 16
Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: almost 7 years ago

10.1107/S139900471400830X

Bacterial periplasmic sialic acid-binding proteins exhibit a conserved binding site
Cited by: 35
Author(s): Thanuja Gangi Setty, Christine Cho, Sowmya Govindappa, Michael A. Apicella, S. Ramaswamy
Software Mentions: 2
Published: about 11 years ago

10.1042/BCJ20200368

Antitoxin autoregulation of M. tuberculosis toxin-antitoxin expression through negative cooperativity arising from multiple inverted repeat sequences
Cited by: 8
Author(s): Izaak N Beck, B. F. Usher, Hannah G Hampton, Peter C. Fineran, Tim R. Blower
Software Mentions: 2
Published: about 5 years ago

10.1042/BCJ20200128

Nek7 conformational flexibility and inhibitor binding probed through protein engineering of the R-spine
Cited by: 10
Author(s): Matthew J. Byrne, Nazia Nasir, Christine Basmadjian, Chitra Bhatia, Rory F. Cunnison, Katherine H. Carr, Corine Mas-Droux, Sharon Yeoh, Céline Cano, Richard Bayliss
Software Mentions: 2
Published: about 5 years ago

10.1107/S2059798319011938

The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level
Cited by: 2
Author(s): S.Y. Lyu, Kuan Hung Lin, Hsien‐Wei Yeh, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0206709

The three dimensional structure of Bovine Salivary Protein 30b (BSP30b) and its interaction with specific rumen bacteria
Cited by: 1
Author(s): Heng Zhang, Judith Burrows, G.L. Card, Graeme T. Attwood, Tom T. Wheeler, Vickery L. Arcus
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0036526

Structural Analyses of the Slm1-PH Domain Demonstrate Ligand Binding in the Non-Canonical Site
Cited by: 21
Author(s): K. Anand, Kenji Maeda, Anne‐Claude Gavin
Software Mentions: 2
Published: about 13 years ago

10.1016/j.molcel.2009.09.038

An Autoinhibitory Tyrosine Motif in the Cell-Cycle-Regulated Nek7 Kinase Is Released through Binding of Nek9
Cited by: 86
Author(s): Mark W. Richards, Laura O’Regan, Corine Mas-Droux, Joëlle Blot, Jack Cheung, Swen Hoelder, Andrew M. Fry, Richard Bayliss
Software Mentions: 2
Published: over 15 years ago

10.1016/j.molcel.2021.02.021

Structural basis for conformational equilibrium of the catalytic spliceosome
Cited by: 21
Author(s): Max E. Wilkinson, Sebastian M. Fica, Wojciech P. Galej, Kiyoshi Nagai
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0010504

Designed Inhibitors of Insulin-Degrading Enzyme Regulate the Catabolism and Activity of Insulin
Cited by: 94
Author(s): Malcolm A. Leissring, E. Malito, Sabrine Hedouin, Lael Reinstatler, Tomoko Sahara, Samer O. Abdul-Hay, Shakeel Choudhry, Ghulam M. Maharvi, Abdul H. Fauq, Malwina Huzarska, Philip S. May, Sung‐Woon Choi, Todd Logan, Benjamin E. Turk, Lewis C. Cantley, Marika Manolopoulou, Wei-Jen Tang, Ross L. Stein, Gregory D. Cuny, Dennis J. Selkoe
Software Mentions: 2
Published: about 15 years ago

10.1042/BCJ20160806

Neisseria meningitidis factor H-binding protein bound to monoclonal antibody JAR5: implications for antibody synergy
Cited by: 18
Author(s): E. Malito, Paola Lo Surdo, Daniele Veggi, Laura Santini, Heather Stefek, Brunella Brunelli, Enrico Luzzi, Matthew J. Bottomley, Peter T. Beernink, María Scarselli
Software Mentions: 2
Published: over 8 years ago

10.1016/j.molcel.2017.08.020

Ubiquitin Linkage-Specific Affimers Reveal Insights into K6-Linked Ubiquitin Signaling
Cited by: 146
Author(s): Martin A. Michel, Kirby N. Swatek, Manuela K. Hospenthal, David Komander
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.celrep.2019.01.073

Control of Bacterial Virulence through the Peptide Signature of the Habitat
Cited by: 39
Author(s): Emilia Krypotou, Mariela Scortti, C. Grundström, Melanie Oelker, Ben F. Luisi, A. Elisabeth Sauer‐Eriksson, José A. Vázquez‐Boland
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules25102404

Structural Basis for Broad Substrate Selectivity of Alcohol Dehydrogenase YjgB from Escherichia coli
Cited by: 2
Author(s): Giang T. Nguyen, Yeon-Gil Kim, Joo‐Myung Ahn, Jeong Ho Chang
Software Mentions: 2
Published: about 5 years ago

10.1107/S2059798319010878

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Cited by: 17
Author(s): Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keiichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji Sode
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0048742

New Insights into the Hendra Virus Attachment and Entry Process from Structures of the Virus G Glycoprotein and Its Complex with Ephrin-B2
Cited by: 30
Author(s): Kai Xu, Yee-Peng Chan, Kanagalaghatta R. Rajashankar, Dimple Khetawat, Lianying Yan, Momchil V. Kolev, Christopher C. Broder, Dimitar B. Nikolov
Software Mentions: 2
Published: over 12 years ago

10.1002/cctc.202100110

A Structural View on the Stereospecificity of Plant Borneol‐Type Dehydrogenases
Cited by: 10
Author(s): Andrea M Chánique, Nicole Dimos, Ivana Drienovská, Elia Calderini, Mónica P. Pantín, Carl P. O. Helmer, Michaël Hofer, Volker Sieber, Loreto P. Parra, Bernhard Loll, Robert Kourist
Software Mentions: 2
Published: over 4 years ago

10.1002/cbic.201800462

Structure and Catalytic Mechanism of a Bacterial Friedel–Crafts Acylase
Cited by: 23
Author(s): Tea Pavkov‐Keller, Nina G. Schmidt, Anna Żądło‐Dobrowolska, Wolfgang Kroutil, Karl Gruber
Software Mentions: 2
Published: over 6 years ago

10.1186/1472-6807-13-30

Crystal structure of the γ-hydroxymuconic semialdehyde dehydrogenase from Pseudomonas sp. strainWBC-3, a key enzyme involved in para-Nitrophenol degradation
Cited by: 3
Author(s): Jing Su, Cong Zhang, Junjie Zhang, Tian‐Ran Wei, Deyu Zhu, Ning‐Yi Zhou, Lin Gu
Software Mentions: 2
Published: over 11 years ago

10.1038/s42003-020-01546-4

Structural basis of Naa20 activity towards a canonical NatB substrate
Cited by: 3
Author(s): Dominik Layer, Jürgen Kopp, Miriam Fontanillo, Maja Köhn, Karine Lapouge, Irmgard Sinning
Software Mentions: 2
Published: over 4 years ago

10.1107/S0907444910001502

Detection and correction of underassigned rotational symmetry prior to structure deposition
Cited by: 12
Author(s): Billy K. Poon, Ralf W. Grosse‐Kunstleve, Peter H. Zwart, Nicholas K. Sauter
Software Mentions: 2
Published: over 15 years ago

10.1038/s42003-019-0562-8

Identification of an amphipathic peptide sensor of the Bacillus subtilis fluid membrane microdomains
Cited by: 5
Author(s): Yiping Jiang, Xin Dai, Mingming Qin, Zhihong Guo
Software Mentions: 2
Published: almost 6 years ago

10.1107/S2059798317006349

Crystal structure ofYersinia pestisvirulence factor YfeA reveals two polyspecific metal-binding sites
Cited by: 14
Author(s): C.D. Radka, Lawrence J. DeLucas, Landon Wilson, Matthew B. Lawrenz, Robert D. Perry, Stephen G. Aller
Software Mentions: 2
Published: about 8 years ago

10.1107/S1399004715009438

High-resolution crystal structures of the solubilized domain of porcine cytochromeb5
Cited by: 3
Author(s): Yu Hirano, Shigenobu Kimura, Taro Tamada
Software Mentions: 2
Published: about 10 years ago

10.3390/molecules23010111

Characterization of Two VAO-Type Flavoprotein Oxidases from Myceliophthora thermophila
Cited by: 7
Author(s): Alessandro Ferrari, H.J. Rozeboom, Aniek S.C. Vugts, Martijn J. Koetsier, R.J. Floor, Marco W. Fraaije
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798319008933

Prediction of models for ordered solvent in macromolecular structures by a classifier based upon resolution-independent projections of local feature data
Cited by: 0
Author(s): Laurel Jones, Michael Tynes, Paul Smith
Software Mentions: 2
Published: almost 6 years ago

10.1107/S1399004715001443

Structure of the N-terminal domain of the protein Expansion: an `Expansion' to the Smad MH2 fold
Cited by: 8
Author(s): Mads Beich-Frandsen, Eric Aragón, Marta Llimargas, J. Benach, Antoni Riéra, Joan Pous, María J. Macias
Software Mentions: 2
Published: over 10 years ago

10.1107/S1399004714022755

Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi
Cited by: 33
Author(s): Elena Fernández‐Fueyo, Sandra Acebes, Francisco J. Ruíz-Dueñas, Marı́a Jesús Martı́nez, Antonio Romero, F.J. Medrano, Vı́ctor Guallar, Ángel T. Martı́nez
Software Mentions: 2
Published: over 10 years ago

10.1186/1472-6807-12-7

Crystal structure of a new benzoic acid inhibitor of influenza neuraminidase bound with a new tilt induced by overpacking subsite C6
Cited by: 10
Author(s): Lalitha Venkatramani, Eric S. Johnson, Gundurao Kolavi, Gillian M. Air, Wayne J. Brouillette, Blaine H. M. Mooers
Software Mentions: 2
Published: about 13 years ago

10.1107/S1399004714006439

Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28
Cited by: 17
Author(s): Sina Möhlmann, Rebecca Mathew, Piotr Neumann, Andreas Schmitt, Reinhard Lührmann, Ralf Ficner
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0071866

The Tick-Derived Anticoagulant Madanin Is Processed by Thrombin and Factor Xa
Cited by: 19
Author(s): Ana C. Figueiredo, Daniele de Sanctis, Pedro José Barbosa Pereira
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0177161

Structures of the inactive and active states of RIP2 kinase inform on the mechanism of activation
Cited by: 31
Author(s): Erika Pellegrini, Luca Signor, Saurabh Singh, Elisabetta Boeri Erba, Stephen Cusack
Software Mentions: 2
Published: about 8 years ago

10.1107/S1399004714027114

Interaction of the amyloid precursor protein-like protein 1 (APLP1) E2 domain with heparan sulfate involves two distinct binding modes
Cited by: 12
Author(s): S.O. Dahms, Magnus C. Mayer, Dirk Roeser, Gerd Multhaup, Manuel E. Than
Software Mentions: 2
Published: over 10 years ago

10.1111/mmi.12656

The structure, function and properties of sirohaem decarboxylase - an enzyme with structural homology to a transcription factor family that is part of the alternative haem biosynthesis pathway
Cited by: 14
Author(s): David J. Palmer, Susanne Schroeder, Andrew D. Lawrence, Evelyne Deery, Susana A.L. Lobo, Lı́gia M. Saraiva, Kirsty J. McLean, Andrew W. Munro, Stuart J. Ferguson, Richard W. Pickersgill, David G. Brown, Martin J. Warren
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0020864

Identification of the Allosteric Regulatory Site of Insulysin
Cited by: 36
Author(s): Nicholas Noinaj, Sonia K. Bhasin, Eun Suk Song, Kirsten E. Scoggin, María A. Juliano, Luiz Juliano, Louis B. Hersh, David W. Rodgers
Software Mentions: 2
Published: about 14 years ago

10.1107/S1399004715002308

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Cited by: 67
Author(s): A.Y. Lyubimov, Thomas D. Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B. Zeldin, Aina E. Cohen, S. Michael Soltis, E.L. Baxter, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, James M. Berger
Software Mentions: 2
Published: over 10 years ago

10.1186/1743-422X-7-359

Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives
Cited by: 40
Author(s): Timothy C. Mueser, Jennifer M. Hinerman, Juliette M. Devos, Ryan A Boyer, Kandace J. Williams
Software Mentions: 2
Published: over 14 years ago

10.1107/S2053230X14003355

A range of C∊3–C∊4 interdomain angles in IgE Fc accommodate binding to its receptor CD23
Cited by: 13
Author(s): B. Dhaliwal, M.O.Y. Pang, Daopeng Yuan, Andrew J. Beavil, Brian J. Sutton
Software Mentions: 2
Published: over 11 years ago

10.1107/S0907444911007888

Structure of HLA-A*0301 in complex with a peptide of proteolipid protein: insights into the role of HLA-A alleles in susceptibility to multiple sclerosis
Cited by: 27
Author(s): Róisín M. McMahon, Lone Smidstrup Friis, Christian Siebold, Manuel A. Friese, Lars Fugger, E Y Jones
Software Mentions: 2
Published: over 14 years ago

10.1038/s42003-020-01531-x

Structural insights into photoactivation of plant Cryptochrome-2
Cited by: 27
Author(s): Malathy Palayam, Jagadeesan Ganapathy, Angelica M. Guercio, Lior Tal, Samuel L. Deck, Nitzan Shabek
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0022337

The Crystal Structure of the Human Co-Chaperone P58IPK
Cited by: 19
Author(s): Maria Svärd, Ekaterina Biterova, Jean-Marie Bourhis, Jodie E. Guy
Software Mentions: 2
Published: about 14 years ago

10.3390/v7122946

Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone
Cited by: 43
Author(s): Carmela Garcia-Doval, José R. Castón, Daniel Luque, Meritxell Granell, José M. Otero, Antonio L. Llamas‐Saiz, Madalena Renouard, P. Boulanger, Mark J. van Raaij
Software Mentions: 2
Published: over 9 years ago

10.1107/S2053230X18000250

Structure of a Talaromyces pinophilus GH62 arabinofuranosidase in complex with AraDNJ at 1.25 Å resolution
Cited by: 4
Author(s): Olga V. Moroz, L.F. Sobala, E.V. Blagova, Travis Coyle, Wei Peng, Kristian B. R. M. Krogh, Keith A. Stubbs, K.S. Wilson, G.J. Davies
Software Mentions: 2
Published: about 7 years ago

10.3390/v9110321

Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image Reconstruction
Cited by: 6
Author(s): Nikéa Pittman, Adam Misseldine, Lorena Geilen, Sujata Halder, J. W. G. Smith, Justin Kurian, Paul R. Chipman, Mandy E.W. Janssen, Robert McKenna, Timothy S. Baker, Anthony D’Abramo, Susan F. Cotmore, Peter Tattersall, Mavis Agbandje‐McKenna
Software Mentions: 2
Published: over 7 years ago

10.1107/S2053230X17006021

Crystal structures of human Fabs targeting the Bexsero meningococcal vaccine antigen NHBA
Cited by: 4
Author(s): Martina Maritan, Roberta Cozzi, Paola Lo Surdo, Daniele Veggi, Matthew J. Bottomley, E. Malito
Software Mentions: 2
Published: about 8 years ago

10.1016/j.csbj.2015.08.005

Integrative Modeling of Macromolecular Assemblies from Low to Near-Atomic Resolution
Cited by: 22
Author(s): Xiaojun Xu, Yan Cheng, Robert M. Wohlhueter, Ivaylo Ivanov
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0066247

CD38 Structure-Based Inhibitor Design Using the N1-Cyclic Inosine 5′-Diphosphate Ribose Template
Cited by: 24
Author(s): Christelle Moreau, Qun Liu, Richard Graeff, Gerd K. Wagner, Mark Thomas, Joanna M. Swarbrick, Satoshi Shuto, Hon Cheung Lee, Quan Hao, Barry V. L. Potter
Software Mentions: 2
Published: about 12 years ago

10.1186/1472-6807-14-17

Characterization of the SAM domain of the PKD-related protein ANKS6 and its interaction with ANKS3
Cited by: 36
Author(s): Catherine Leettola, Mary Jane Knight, Duilio Cascio, Sigrid Hoffman, James U. Bowie
Software Mentions: 2
Published: about 11 years ago

10.1107/S0907444912024420

Experimental phasing using zinc anomalous scattering
Cited by: 22
Author(s): Sun Mi Shin, Young Jun An, Chang-Sung Jeong, Min Kyu Kim, Sung Gyu Lee, Kwang Hoon Lee, Byung Ha Oh
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12900-014-0024-y

Structural insights into Escherichia coli polymyxin B resistance protein D with X-ray crystallography and small-angle X-ray scattering
Cited by: 9
Author(s): Hang-Hyun Jo, Eui Young Jeong, Jinseong Jeon, Changill Ban
Software Mentions: 2
Published: over 10 years ago

10.3390/v12080812

Structural and Biological Basis of Alphacoronavirus nsp1 Associated with Host Proliferation and Immune Evasion
Cited by: 17
Author(s): Zhou Shen, Yiling Yang, Siqi Yang, Guangxu Zhang, Shaobo Xiao, Zhen F. Fu, Guiqing Peng
Software Mentions: 2
Published: about 5 years ago

10.1107/S1399004714019725

Structural characterization of the virulence factor nuclease A fromStreptococcus agalactiae
Cited by: 7
Author(s): A.F. Moon, Philippe Gaudu, Lars C. Pedersen
Software Mentions: 2
Published: almost 11 years ago

10.3390/v12121346

Structural Basis of Zika Virus Specific Neutralization in Subsequent Flavivirus Infections
Cited by: 7
Author(s): Madhumati Sevvana, Thomas F. Rogers, Andrew Miller, Feng Long, Thomas Klose, Nathan Beutler, Yu-Cheng Lai, Mara Parren, Laura M. Walker, Geeta Buda, Dennis R. Burton, Michael G. Rossmann, Richard Kühn
Software Mentions: 2
Published: over 4 years ago

10.1107/S2053230X19006472

Structure of the Prx6-subfamily 1-Cys peroxiredoxin from Sulfolobus islandicus
Cited by: 5
Author(s): Sander Stroobants, Inge Van Molle, Queen Saidi, Karl Jonckheere, Dominique Maes, Eveline Peeters
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0050097

Structure of the Human Discs Large 1 PDZ2– Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering
Cited by: 8
Author(s): Kevin C. Slep
Software Mentions: 2
Published: over 12 years ago

10.3390/v13061101

The Molecular Basis for Escherichia coli O157:H7 Phage FAHEc1 Endolysin Function and Protein Engineering to Increase Thermal Stability
Cited by: 7
Author(s): Michael J. Love, David Coombes, Sarah H. Manners, Gayan S. Abeysekera, Craig Billington, Renwick C. J. Dobson
Software Mentions: 2
Published: about 4 years ago

10.3390/v13071374

Structural Investigation of Orf Virus Bcl-2 Homolog ORFV125 Interactions with BH3-Motifs from BH3-Only Proteins Puma and Hrk
Cited by: 3
Author(s): Chathura D. Suraweera, Mark G. Hinds, Marc Kvansakul
Software Mentions: 2
Published: about 4 years ago

10.3390/v13081495

Crystal Structure of a Retroviral Polyprotein: Prototype Foamy Virus Protease-Reverse Transcriptase (PR-RT)
Cited by: 3
Author(s): Jerry Joe Ebow Kingsley Harrison, Steve Tuske, Kalyan Kumar Das, Francesc Xavier Ruiz, J.D. Bauman, Paul L. Boyer, Jeffrey J. DeStefano, Stephen H. Hughes, Eddy Arnold
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0076803

Elucidation of Substrate Specificity in Aspergillus nidulans UDP-Galactose-4-Epimerase
Cited by: 7
Author(s): Sean A. Dalrymple, Jennifer S. Ko, I. S. Sheoran, Susan G. W. Kaminskyj, D.A.R. Sanders
Software Mentions: 2
Published: almost 12 years ago

10.1080/22221751.2019.1707716

Structural characterization of glycinamide-RNase-transformylase T from Mycobacterium tuberculosis
Cited by: 1
Author(s): Chuanbo Cong, Zuliang Liu, Liguo Liu, Jianmin Wang, Qi Jin
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798317003400

Estimation of the protein–ligand interaction energy for model building and validation
Cited by: 10
Author(s): Daria A. Beshnova, Joana Pereira, Victor S. Lamzin
Software Mentions: 2
Published: over 8 years ago

10.1107/S2053230X15015939

An active site–tail interaction in the structure of hexahistidine-tagged Thermoplasma acidophilum citrate synthase
Cited by: 7
Author(s): Jesse Murphy, Stefano Donini, T.J. Kappock
Software Mentions: 2
Published: almost 10 years ago

10.1186/1472-6807-7-45

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Cited by: 35
Author(s): Norbert Schormann, Alexei Grigorian, Alexandra B. Samal, Krishnan Raman, Lawrence J. DeLucas, Debasish Chattopadhyay
Software Mentions: 2
Published: about 18 years ago

10.1371/journal.pone.0121764

Stability of the Octameric Structure Affects Plasminogen-Binding Capacity of Streptococcal Enolase
Cited by: 13
Author(s): Amanda J. Cork, Daniel Ericsson, Ruby H. P. Law, Lachlan W. Casey, Eugene Valkov, Carlo Bertozzi, Anna Stamp, Blagojce Jovcevski, J. Andrew Aquilina, James C. Whisstock, Mark J. Walker, Boštjan Kobe
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798319000081

Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis
Cited by: 5
Author(s): Emily Furlong, Fabian Kurth, Lakshmanane Premkumar, Andrew E. Whitten, Jennifer L. Martin
Software Mentions: 2
Published: over 6 years ago

10.1140/epjc/s10052-015-3819-5

Heavy-flavour and quarkonium production in the LHC era: from proton–proton to heavy-ion collisions
Cited by: 396
Author(s): A. Andronic, François Arleo, R. Arnaldi, A. Beraudo, E. Bruna, D. Caffarri, Z. Conesa del Valle, J. G. Contreras, T. Dahms, A. Dainese, Magdalena Djordjevic, E. G. Ferreiro, H. Fujii, Pol Bernard Gossiaux, R. Granier de Cassagnac, C. Hadjidakis, M. He, Hendrik van Hees, W. A. Horowitz, R. Kolevatov, B. Z. Kopeliovich, J. P. Lansberg, Maria-Paola Lombardo, C. Lourenço, Gines Martinez-Garcia, L. Massacrier, C. Mironov, A. Mischke, Marlene Nahrgang, M. Nguyen, J. Nystrand, Stéphane Peigné, S. Porteboeuf-Houssais, I. K. Potashnikova, A. Rakotozafindrabe, Ralf Rapp, P. Robbe, M. Rosati, P. Rosnet, Helmut Satz, R. Schicker, I. Schienbein, Iván Schmidt, E. Scomparin, Rajnikant Sharma, J. Stachel, D. Stocco, Michael Strickland, R. Tieulent, B. A. Trzeciak, Jan Uphoff, Ivan Vitev, R. Vogt, K. Watanabe, H. K. Woehri, Pengfei Zhuang
Software Mentions: 2
Published: over 9 years ago

10.1186/1472-6807-12-13

Crystal structure of the Yersinia enterocolitica type III secretion chaperone SycD in complex with a peptide of the minor translocator YopD
Cited by: 25
Author(s): Madeleine Schreiner, Hartmut H. Niemann
Software Mentions: 2
Published: over 13 years ago

10.1107/S1399004713033634

Multi-PAS domain-mediated protein oligomerization of PpsR fromRhodobacter sphaeroides
Cited by: 11
Author(s): Udo Heintz, Anton Meinhart, Andreas Winkler
Software Mentions: 2
Published: over 11 years ago

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Papers Mentioning PHENIX 2,287