cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-00917-y

A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Cited by: 21
Author(s): Shigetoshi Oiki, Bunzo Mikami, Yukie Maruyama, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: over 9 years ago

10.1016/j.yjsbx.2020.100028

A complex between the Zika virion and the Fab of a broadly cross-reactive neutralizing monoclonal antibody revealed by cryo-EM and single particle analysis at 4.1 Å resolution
Cited by: 3
Author(s): Anu Tyagi, Tofayel Ahmed, Jing Shi, Shashi Bhushan
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-01057-z

Structural investigations on orotate phosphoribosyltransferase from Mycobacterium tuberculosis, a key enzyme of the de novo pyrimidine biosynthesis
Cited by: 22
Author(s): Stefano Donini, Davide M. Ferraris, Riccardo Miggiano, Alberto Massarotti, Menico Rizzi
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01989-6

Structural studies of the periplasmic portion of the diguanylate cyclase CdgH from Vibrio cholerae
Cited by: 8
Author(s): Min Xu, Yizhi Wang, Xiu‐An Yang, Tao Jiang, Wei Xie
Software Mentions: 2
Published: over 9 years ago

10.1016/j.yjsbx.2020.100024

Cryo-electron microscopic and X-ray crystallographic analysis of the light-driven proton pump proteorhodopsin reveals a pentameric assembly
Cited by: 4
Author(s): Stephan Hirschi, David Kalbermatter, Zöhre Ucurum, Dimitrios Fotiadis
Software Mentions: 2
Published: over 6 years ago

10.1016/j.yjsbx.2020.100030

Crystallographic and cryogenic electron microscopic structures and enzymatic characterization of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Cited by: 3
Author(s): Yuta Sato, Takashi Yabuki, Naruhiko Adachi, Toshio Moriya, T. Arakawa, Masato Kawasaki, Chihaya Yamada, Toshiya Senda, Shinya Fushinobu, Takayoshi Wakagi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41422-021-00514-9

Humoral immune response to circulating SARS-CoV-2 variants elicited by inactivated and RBD-subunit vaccines
Cited by: 109
Author(s): Yunlong Cao, Ayijiang Yisimayi, Yali Bai, Weijin Huang, Xiaofeng Li, Zhiying Zhang, Tianjiao Yuan, Ran An, Jing Wang, Tianhe Xiao, Shuo Du, Wenping Ma, Liyang Song, Yongzheng Li, Xiang Li, Weiliang Song, Jiajing Wu, Shuo Liu, Xuemei Li, Yonghong Zhang, Bin Su, Xuesong Guo, Yu‐Sheng Wei, Chuanping Gao, Nana Zhang, Yifei Zhang, Yang Dou, Xiaoyu Xu, Rui Shi, Lan Bai, Ronghua Jin, Yingmin Ma, Cheng‐Feng Qin, Youchun Wang, Yingmei Feng, Junyu Xiao, X. Sunney Xie
Software Mentions: 2
Published: over 5 years ago

10.1007/s10969-015-9193-6

A SelB/EF-Tu/aIF2γ-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNACys
Cited by: 1
Author(s): Takatoshi Yanagisawa, Ryohei Ishii, Yasushi Hikida, Ryuya Fukunaga, Toru Sengoku, S. Sekine, Shigeyuki Yokoyama
Software Mentions: 2
Published: over 11 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-02823-9

Efficient Generation of Bispecific Murine Antibodies for Pre-Clinical Investigations in Syngeneic Rodent Models
Cited by: 31
Author(s): Aran F. Labrijn, Joyce Meesters, Matthew W. Bunce, Anthony A. Armstrong, Sandeep Somani, Tom Nesspor, Mark L. Chiu, Işıl Altıntaş, Sandra Verploegen, Janine Schuurman, Paul W.H.I. Parren
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-02805-x

A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases
Cited by: 32
Author(s): Rubén M. Buey, David Fernández‐Justel, Íñigo Marcos‐Alcalde, Graeme Winter, Paulino Gómez‐Puertas, José M. de Pereda, José Luis Revuelta
Software Mentions: 2
Published: over 9 years ago

10.1107/S1600577518010354

High-speed raster-scanning synchrotron serial microcrystallography with a high-precision piezo-scanner
Cited by: 18
Author(s): Yuan Gao, Weihe Xu, Wuxian Shi, Alexei S. Soares, Jean Jakoncic, Stuart Myers, Bruno Martins, John M. Skinner, Qun Li, H. J. Bernstein, Seán McSweeney, Evgeny Nazaretski, Martin R. Fuchs
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-017-02803-z

Construction of novel repeat proteins with rigid and predictable structures using a shared helix method
Cited by: 22
Author(s): Suk-Jun Youn, Nayoung Kwon, Ji Hyun Lee, Jin Hong Kim, Jin‐Woo Choi, Hayyoung Lee, Jie‐Oh Lee
Software Mentions: 2
Published: over 9 years ago

10.1107/S1600577514026289

Radiation damage to nucleoprotein complexes in macromolecular crystallography
Cited by: 20
Author(s): C.S. Bury, Elspeth F. Garman, H. Ginn, Raimond B. G. Ravelli, Ian Carmichael, Geoff Kneale, J.E. McGeehan
Software Mentions: 2
Published: over 11 years ago

10.1107/S1600577520014599

High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection
Cited by: 0
Author(s): Mikael Jensen, Viktor Ahlberg Gagnér, Juan Sanchez, Anders Bengtsson, Johanna Ekström, Tinna Björg Úlfarsdóttir, María-José García-Bonete, Andrius Jurgilaitis, David Kroon, Van Tuong Pham, Stefano Checcia, Hélène Coudert-Alteirac, Siawosch Schewa, Manfred Rößle, Helena Rodilla, Jan Stake, Vitali Zhaunerchyk, Jörgen Larsson, Gergely Katona
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-03220-y

Bacterial protease uses distinct thermodynamic signatures for substrate recognition
Cited by: 13
Author(s): G.A. Bezerra, Yuko Ohara‐Nemoto, Irina Cornaciu, Sofiya Fedosyuk, Guillaume Hoffmann, Adam Round, José Antonio Márquez, Takayuki Nemoto, Kristina Djinović-Carugo
Software Mentions: 2
Published: over 9 years ago

10.1038/s42003-019-0562-8

Identification of an amphipathic peptide sensor of the Bacillus subtilis fluid membrane microdomains
Cited by: 5
Author(s): Yiping Jiang, Xin Dai, Mingming Qin, Zhihong Guo
Software Mentions: 2
Published: about 7 years ago

10.1080/10717544.2018.1428245

HSA-based multi-target combination therapy: regulating drugs’ release from HSA and overcoming single drug resistance in a breast cancer model
Cited by: 31
Author(s): Yanzi Gou, Zhenlei Zhang, Dongyang Li, Lei Zhao, Meiling Cai, Zhigang Sun, Yongping Li, Yao Zhang, Hina Khan, Hongbing Sun, Tao Wang, Hong Liang, Feng Yang
Software Mentions: 2
Published: over 8 years ago

10.15252/embj.2020105908

Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9
Cited by: 27
Author(s): Iven Winkelmann, Ryota Matsuoka, Pascal Meier, Denis Shutin, Chen‐Ou Zhang, Laura Orellana, Ricky Sexton, Michael Landreh, Carol V. Robinson, Oliver Beckstein, David Drew
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-017-05234-y

Structural and Biochemical Characterization of Apicomplexan Inorganic Pyrophosphatases
Cited by: 2
Author(s): Abhishek Jamwal, Manickam Yogavel, M. Z. Abdin, Swatantra Kumar Jain, Amit Sharma
Software Mentions: 2
Published: about 9 years ago

10.1107/S0909049513020803

High-resolution crystal structure ofStreptococcus pyogenesβ-NAD+glycohydrolase in complex with its endogenous inhibitor IFS reveals a highly water-rich interface
Cited by: 4
Author(s): Ji Young Yoon, Doo Ri An, Hye Jin Yoon, Hyoun Sook Kim, Sang Jae Lee, Ha Na Im, Jun Young Jang, Se Won Suh
Software Mentions: 2
Published: almost 13 years ago

10.1016/j.jbc.2021.100321

Structural characterization of HIV-1 matrix mutants implicated in envelope incorporation
Cited by: 5
Author(s): Gunnar N. Eastep, Ruba H. Ghanam, Todd Green, Jamil S. Saad
Software Mentions: 2
Published: over 5 years ago

10.1107/S0909049513020773

Structural fluctuation observed in Z-DNA d(CGCGCG)2in the absence of divalent metal cations and polyamines
Cited by: 5
Author(s): Toshiyuki Chatake
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-017-05627-z

X-ray crystallographic structure of a bacterial polysialyltransferase provides insight into the biosynthesis of capsular polysialic acid
Cited by: 12
Author(s): Christian Lizak, L.J. Worrall, Lars Baumann, Moritz M. Pfleiderer, Gesa Volkers, Tianjun Sun, Lyann Sim, Warren W. Wakarchuk, Stephen G. Withers, N.C.J. Strynadka
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-05268-2

Structural and Functional Analysis of Latex Clearing Protein (Lcp) Provides Insight into the Enzymatic Cleavage of Rubber
Cited by: 25
Author(s): Lorena Ilcu, Wolf Röther, Jakob Birke, Anton Brausemann, Oliver Einsle, Dieter Jendrossek
Software Mentions: 2
Published: about 9 years ago

10.1128/JVI.01560-20

Orsay Virus CP-δ Adopts a Novel β-Bracelet Structural Fold and Incorporates into Virions as a Head Fiber
Cited by: 0
Author(s): Yusong R. Guo, Yingying Fan, Ying Zhou, Miao Jin, Jim L. Zhang, Hongbing Jiang, Matthew V. Holt, Tao Wang, Nicolas L. Young, David Wang, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: almost 6 years ago

10.1002/cctc.202100110

A Structural View on the Stereospecificity of Plant Borneol‐Type Dehydrogenases
Cited by: 10
Author(s): Andrea M Chánique, Nicole Dimos, Ivana Drienovská, Elia Calderini, Mónica P. Pantín, Carl P. O. Helmer, Michaël Hofer, Volker Sieber, Loreto P. Parra, Bernhard Loll, Robert Kourist
Software Mentions: 2
Published: over 5 years ago

10.1128/JVI.00723-19

GII.13/21 Noroviruses Recognize Glycans with a Terminal β-Galactose via an Unconventional Glycan Binding Site
Cited by: 7
Author(s): Cong Xu, Xiaoman Sun, Jianxun Qi, Han-Bo Li, Wengang Chai, Qing Zhang, Hong Wang, Xiangyu Kong, Jiao Song, Lili Pang, Miao Jin, Dan-di Li, Ming Tan, Zhaojun Duan
Software Mentions: 2
Published: about 7 years ago

10.1128/JVI.01253-17

NS3 from Hepatitis C Virus Strain JFH-1 Is an Unusually Robust Helicase That Is Primed To Bind and Unwind Viral RNA
Cited by: 11
Author(s): Ting Zhou, Xiao‐Ming Ren, Rebecca L. Adams, Anna Marie Pyle
Software Mentions: 2
Published: over 8 years ago

10.1128/JVI.00694-16

Crystal Structure of the Human Astrovirus Capsid Protein
Cited by: 32
Author(s): Yukimatsu Toh, Justin Harper, Kelly A. Dryden, Mark Yeager, Carlos F. Arias, Ernesto Méndez, Yizhi Jane Tao
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-017-06278-w

Mechanisms and Specificity of Phenazine Biosynthesis Protein PhzF
Cited by: 11
Author(s): Christina Diederich, Mario Leypold, Martin Culka, Hansjörg Weber, Rolf Breinbauer, G. Matthias Ullmann, Wulf Blankenfeldt
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-06578-1

Structure of Chorismate Mutase-like Domain of DAHPS from Bacillus subtilis Complexed with Novel Inhibitor Reveals Conformational Plasticity of Active Site
Cited by: 11
Author(s): Shivendra Pratap, Aditya Dev, Vijay Kumar, Ravi Yadav, M. Narwal, Shailly Tomar, Pravindra Kumar
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-01705-4

Structural analysis of the regulatory mechanism of MarR protein Rv2887 in M. tuberculosis
Cited by: 16
Author(s): Yunrong Gao, Defeng Li, Joy Fleming, Ya‐Feng Zhou, Ying Liu, Jiao-Yu Deng, Lin Zhou, Jie Zhou, Guofeng Zhu, Xian-En Zhang, Dacheng Wang, Lijun Bi
Software Mentions: 2
Published: about 9 years ago

10.1016/j.jbc.2021.100662

The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins
Cited by: 14
Author(s): Katrin Röllen, Joachim Granzin, Alina Remeeva, Mehdi D. Davari, Thomas Gensch, Vera V. Nazarenko, Kirill Kovalev, Andrey Bogorodskiy, Valentin Borshchevskiy, Stefanie Hemmer, Ulrich Schwaneberg, Valentin Gordeliy, Karl‐Erich Jaeger, Renu Batra‐Safferling, Ivan Gushchin, Ulrich Krauß
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100684

Crystal structure of the catalytic domain of botulinum neurotoxin subtype A3
Cited by: 3
Author(s): Oneda Leka, Yufan Wu, Xiao Dan Li, Richard A. Kammerer
Software Mentions: 2
Published: over 5 years ago

10.1128/JVI.03065-15

A Dimerization-Dependent Mechanism Drives the Endoribonuclease Function of Porcine Reproductive and Respiratory Syndrome Virus nsp11
Cited by: 26
Author(s): Yuejun Shi, Youwen Li, Yingying Lei, Gang Ye, Zhou Shen, Limeng Sun, Rui Luo, Dan Wang, Zhen F. Fu, Shaobo Xiao, Guiqing Peng
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-017-08019-5

Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain
Cited by: 6
Author(s): Shin‐ichi Terawaki, Shohei Fujita, Takuya Katsutani, Kensuke Shiomi, Kazuko Keino‐Masu, Masayuki Masu, Kaori Wakamatsu, Naoki Shibata, Yoshiki Higuchi
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-08834-w

Structural analysis of Wss1 protein from saccharomyces cerevisiae
Cited by: 9
Author(s): Xiaoyun Yang, Yanhua Li, Zengqiang Gao, Zongqiang Li, Jianhua Xu, Wenjia Wang, Yuhui Dong
Software Mentions: 2
Published: about 9 years ago

10.1038/s42003-020-01266-9

Over-activation of a nonessential bacterial protease DegP as an antibiotic strategy
Cited by: 17
Author(s): Hyunjin Cho, Yuri Choi, Kyoung‐Wook Min, Jung Bae Son, Hyojin Park, Hyung Ho Lee, Seokhee Kim
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100713

The mycobacterial proteasomal ATPase Mpa forms a gapped ring to engage the 20S proteasome
Cited by: 3
Author(s): Yuanyuan Yin, Amanda Kovach, Hao-Chi Hsu, K. Heran Darwin, Huilin Li
Software Mentions: 2
Published: over 5 years ago

10.1038/s41422-021-00474-0

Structural mechanism of cooperative activation of the human calcium-sensing receptor by Ca2+ ions and L-tryptophan
Cited by: 39
Author(s): Shenglong Ling, Peng Shi, Sanling Liu, Xianyu Meng, Ying Zhou, Wenjing Sun, Shenghai Chang, Xing Zhang, Longhua Zhang, Chaowei Shi, Degang Sun, Lei Liu, Changlin Tian
Software Mentions: 2
Published: over 5 years ago

10.15252/embj.2018101414

Coupling of ATPase activity, microtubule binding, and mechanics in the dynein motor domain
Cited by: 19
Author(s): Stefan Niekamp, Nicolas Coudray, Nan Zhang, Ronald D. Vale, Gira Bhabha
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-14337-5

Structure based biophysical characterization of the PROPPIN Atg18 shows Atg18 oligomerization upon membrane binding
Cited by: 37
Author(s): Andreea Scacioc, Carla Schmidt, Tommy Hofmann, Henning Urlaub, Karin Kühnel, Ángel Pérez-Lara
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.jbc.2021.100771

Structural basis of KdpD histidine kinase binding to the second messenger c-di-AMP
Cited by: 11
Author(s): Avijit Dutta, Mona Batish, Vijay Parashar
Software Mentions: 2
Published: over 5 years ago

10.1016/j.jbc.2021.100857

Oxalate decarboxylase uses electron hole hopping for catalysis
Cited by: 5
Author(s): Anthony J. Pastore, Ruijie D. Teo, Alvaro Montoya, M.J. Burg, Umar T. Twahir, Steven D. Bruner, David N. Beratan, Alexander Angerhofer
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-14754-6

Structural basis of small molecule ATPase inhibition of a human mitotic kinesin motor protein
Cited by: 24
Author(s): Hee Won Park, Zhongjun Ma, Haizhong Zhu, Shimin Jiang, Robert Robinson, Sharyn A. Endow
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-15715-9

Crystal structure of the N-terminal domain of human CDC73 and its implications for the hyperparathyroidism-jaw tumor (HPT-JT) syndrome
Cited by: 19
Author(s): Wei Sun, Xiaolin Kuang, Yan-Ping Liu, Lu Tian, Xiaozhi Yan, Wenqing Xu
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16392-4

Deciphering how Cpl-7 cell wall-binding repeats recognize the bacterial peptidoglycan
Cited by: 22
Author(s): Noemí Bustamante, Manuel Iglesias-Bexiga, N. Bernardo-García, N. Silva-Martin, Gema Alejandra Botana García, María Asunción Campanero-Rhodes, Esther Perez Garcia, Isabel Usón, Rubén M. Buey, Pedro Garcı́a, J.A. Hermoso, Marta Bruix, Margarita Menéndez
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16421-2

A half-site multimeric enzyme achieves its cooperativity without conformational changes
Cited by: 14
Author(s): Mirella Vivoli, Jiuxia Pang, Nicholas J. Harmer
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16801-8

Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans
Cited by: 7
Author(s): Shigetoshi Oiki, Reiko Kamochi, Bunzo Mikami, Kousaku Murata, Wataru Hashimoto
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.jbc.2021.100957

The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase
Cited by: 5
Author(s): Ankoor Patel, Jessica A.M. McBride, Brian L. Mark
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jbc.2021.101001

Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family
Cited by: 3
Author(s): Tatsuya Kondo, Miyu Kichijo, Akiho Maruta, Makoto Nakaya, Shigeo Takenaka, T. Arakawa, Shinya Fushinobu, Tatsuji Sakamoto
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-017-17694-3

Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B
Cited by: 28
Author(s): Ke Shi, Özlem Demir, Michael A. Carpenter, J. D. Wagner, Kayo Kurahashi, Reuben S. Harris, Rommie E. Amaro, Hideki Aihara
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-19192-6

The crystal structure of D-xylonate dehydratase reveals functional features of enzymes from the Ilv/ED dehydratase family
Cited by: 19
Author(s): Mohammad Mubinur Rahman, Martina Andberg, Anu Koivula, Juha Rouvinen, Nina Hakulinen
Software Mentions: 2
Published: over 8 years ago

10.1016/j.jbc.2021.101043

Catalytic mechanism of ancestral L-lysine oxidase assigned by sequence data mining
Cited by: 8
Author(s): Saiko Sugiura, Shogo Nakano, Masazumi Niwa, Fumihito Hasebe, Daisuke Matsui, Sohei Ito
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-20557-0

ATP-dependent conformational change in ABC-ATPase RecF serves as a switch in DNA repair
Cited by: 15
Author(s): Qun Tang, Yan-Ping Liu, Hai-Huan Shan, Lu Tian, Jie-Zhong Zhang, Xiaozhi Yan
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20899-9

Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
Cited by: 5
Author(s): Dan Bi Lee, Jong Min Kim, Jong Hyeon Seok, Ji Hye Lee, Jae Deok Jo, Ji Young Mun, Chelsie E. Conrad, Jesse Coe, Gerrett Nelson, Brenda G. Hogue, Thomas A. White, Nadia A. Zatsepin, Uwe Weierstall, Anton Barty, Henry N. Chapman, Petra Fromme, John C. H. Spence, Mi Sook Chung, Chang Hyun Oh, Kyung Hyun Kim
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-20925-w

Conserved, unstructured regions in Pseudomonas aeruginosa PilO are important for type IVa pilus function
Cited by: 12
Author(s): Tiffany L. Leighton, Mac C.Y. Mok, M.S. Junop, P. Lynne Howell, Lori L. Burrows
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-21218-y

The Extracellular Domain of Pollen Receptor Kinase 3 is structurally similar to the SERK family of co-receptors
Cited by: 11
Author(s): Sayan Chakraborty, Haiyun Pan, Qingyu Tang, Colin Woolard, Gang Xu
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22300-1

Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis
Cited by: 20
Author(s): Li Liu, Tao Li, Xiao Cheng, Peng Cheng, Changcheng Li, Libang He, Si-Min Ju, Ningyu Wang, Tinghong Ye, Mao Lian, Qing-Jie Xiao, Yingjie Song, Yuanfeng Zhu, Luoting Yu, Zhen-Ling Wang, Rui Bao
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-22382-x

High-affinity ligands of the colchicine domain in tubulin based on a structure-guided design
Cited by: 35
Author(s): Oskía Bueno, Juan Estévez-Gallego, Solange Martins, A.E. Prota, Federico Gago, Asier Gómez-SanJuan, María‐José Camarasa, Isabel Barasoaín, Michel O. Steinmetz, J. Fernando Díaz, María‐Jesús Pérez‐Pérez, Sandra Liekens, Eva-Marı́a Priego
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-23423-1

Structural Implications of Mutations Conferring Rifampin Resistance in Mycobacterium leprae
Cited by: 36
Author(s): Sundeep Chaitanya Vedithi, Sony Malhotra, Madhusmita Das, Sheela Daniel, Nanda B Kishore, Anuja George, Shantha Arumugam, Lakshmi Rajan, Mannam Ebenezer, David B. Ascher, Eddy Arnold, Tom L. Blundell
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-23821-5

Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis
Cited by: 3
Author(s): Tesmine Martin, Yuan‐Chao Lou, Chun Chou, Shu‐Yi Wei, Sushant Sadotra, Chao-Cheng Cho, Meng-Hsuan Lin, Jung-Hsiang Tai, Chun‐Hua Hsu, Chinpan Chen
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-24276-4

Tau Antibody Structure Reveals a Molecular Switch Defining a Pathological Conformation of the Tau Protein
Cited by: 19
Author(s): Jessica E. Chukwu, Jan T. Pedersen, Lars Østergaard Pedersen, Christiane Volbracht, Einar M. Sigurdsson, Xiang‐Peng Kong
Software Mentions: 2
Published: over 8 years ago

10.1007/s00775-019-01639-4

Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine–valine ether cross-link formation in the R2-like ligand-binding oxidase
Cited by: 7
Author(s): Julia J. Griese, Ramona Kositzki, Michael Haumann, Martin Högbom
Software Mentions: 2
Published: over 7 years ago

10.1186/s12929-019-0589-7

Structural basis of polyethylene glycol recognition by antibody
Cited by: 27
Author(s): Cheng Chung Lee, Yu-Cheng Su, Tzu Ping Ko, Li-Hung Lin, Chih Ya Yang, Shu‐Wen Chang, Steve R. Roffler, Andrew H.‐J. Wang
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-020-01412-3

Structural basis of superinfection exclusion by bacteriophage T4 Spackle
Cited by: 14
Author(s): Ke Shi, Justin Oakland, Fredy Kurniawan, Nicholas H. Moeller, Surajit Banerjee, Hideki Aihara
Software Mentions: 2
Published: almost 6 years ago

10.15252/embj.2020106164

Cryo‐EM reveals the complex architecture of dynactin's shoulder region and pointed end
Cited by: 15
Author(s): C.K. Lau, Francis J. O’Reilly, S. Balaji, Samuel E Lacey, Juri Rappsilber, Andrew P. Carter
Software Mentions: 2
Published: over 5 years ago

10.1083/jcb.201910059

Molecular basis of MKLP2-dependent Aurora B transport from chromatin to the anaphase central spindle
Cited by: 23
Author(s): Michela Serena, Ricardo Bastos, P.R. Elliott, Francis A. Barr
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jfluchem.2021.109804

Fluorinated derivatives of pyridine-2,4-dicarboxylate are potent inhibitors of human 2-oxoglutarate dependent oxygenases
Cited by: 7
Author(s): Lennart Brewitz, Yu Nakashima, Anthony Tumber, E. Salah, Christopher J. Schofield
Software Mentions: 2
Published: about 5 years ago

10.15252/embj.2019103234

Structural basis for centromere maintenance by Drosophila <scp>CENP</scp> ‐A chaperone <scp>CAL</scp> 1
Cited by: 27
Author(s): Bethan Medina‐Pritchard, Vasiliki Lazou, Juan Zou, Olwyn Byron, Maria Alba Abad, Juri Rappsilber, Patrick Heun, A. Arockia Jeyaprakash
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-021-01739-5

Structure–function studies of ultrahigh molecular weight isoprenes provide key insights into their biosynthesis
Cited by: 2
Author(s): Hiroyuki Kajiura, Takumi Yoshizawa, Yuji Tokumoto, Nobuaki Suzuki, Shinya Takeno, Kanokwan Jumtee Takeno, Takuya Yamashita, Shun‐ichi Tanaka, Yoshinobu Kaneko, Kazuhito Fujiyama, Hideki Matsumura, Yasuhiro Nakazawa
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-019-0426-2

15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism
Cited by: 14
Author(s): Giancarlo Abis, Rebecca L. Charles, J. Kopec, Wyatt W. Yue, R. Andrew Atkinson, Tam T. Bui, Steven Lynham, Popova Sn, Yin-Biao Sun, Franca Fraternali, Philip Eaton, Maria R. Conte
Software Mentions: 2
Published: over 7 years ago

10.1080/14756366.2020.1837123

Crystal structure-guided design of berberine-based novel chitinase inhibitors
Cited by: 13
Author(s): Lei Chen, Ling Zhu, Jinli Chen, Wei Chen, Xuhong Qian, Qing Yang
Software Mentions: 2
Published: over 6 years ago

10.15252/embr.202052325

NeutrobodyPlex—monitoring SARS‐CoV‐2 neutralizing immune responses using nanobodies
Cited by: 35
Author(s): Teresa R. Wagner, E. Ostertag, Philipp Kaiser, Marius Gramlich, Natalia Ruétalo, Daniel Junker, Julia Haering, Bjoern Traenkle, Matthias Becker, Alex Dulovic, H Schweizer, Stefan Nueske, Armin M. Scholz, Anne Zeck, Katja Schenke‐Layland, Annika Nelde, Monika Strengert, Juliane S. Walz, Georg Zocher, Thilo Stehle, Michael Schindler, Nicole Schneiderhan‐Marra, Ulrich Rothbauer
Software Mentions: 2
Published: over 5 years ago

10.1021/acs.jmedchem.1c00048

Sustainable Drug Discovery of Multi-Target-Directed Ligands for Alzheimer’s Disease
Cited by: 53
Author(s): Michele Rossi, Michela Freschi, Luciana de Camargo Nascente, Alessandra Salerno, Sarah de Melo Viana Teixeira, Florian Nachon, Fabien Chantegreil, Ondřej Soukup, Lukáš Prchal, Marco Malaguti, Christian Bergamini, Manuela Bartolini, Cristina Angeloni, Silvana Hrelia, Luiz Antônio Soares Romeiro, María Laura Bolognesi
Software Mentions: 2
Published: over 5 years ago

10.1021/acs.jmedchem.0c02207

Targeting the FtsZ Allosteric Binding Site with a Novel Fluorescence Polarization Screen, Cytological and Structural Approaches for Antibacterial Discovery
Cited by: 10
Author(s): Sonia Huecas, Lidia Araújo‐Bazán, Federico M. Ruiz, Laura B. Ruíz-Avila, R. Fernando Martínez, Andrea Escobar-Peña, Marta Artola, Henar Vázquez-Villa, Mar Martín‐Fontecha, Carlos Fernández‐Tornero, María L. López‐Rodríguez, José Manuel Andreu
Software Mentions: 2
Published: over 5 years ago

10.1021/acs.jmedchem.1c00663

Xanthine Derivatives Reveal an Allosteric Binding Site in Methylenetetrahydrofolate Dehydrogenase 2 (MTHFD2)
Cited by: 7
Author(s): Lung-Chun Lee, Yi-Hui Peng, Hsin-Huei Chang, Tsu Hsu, Chih Heng Lu, Chiung‐Shiann Huang, Ching-Cheng Hsueh, Fang-Chun Kung, Ching‐Chuan Kuo, Weir‐Torn Jiaang, Su-Ying Wu
Software Mentions: 2
Published: about 5 years ago

10.1016/j.jmb.2013.03.019

Structure of the Tubulin/FtsZ-Like Protein TubZ from Pseudomonas Bacteriophage ΦKZ
Cited by: 30
Author(s): C.H.S. Aylett, Thierry Izoré, Linda Amos, Jan Löwe
Software Mentions: 2
Published: over 13 years ago

10.1016/j.jmb.2018.08.027

Molecular Basis for Immunity Protein Recognition of a Type VII Secretion System Exported Antibacterial Toxin
Cited by: 24
Author(s): Timothy A. Klein, Manuel Pazos, Michael G. Surette, Waldemar Vollmer, John C. Whitney
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.jmb.2011.11.007

Structure and Kinetic Stability of the p63 Tetramerization Domain
Cited by: 26
Author(s): Eviatar Natan, A.C. Joerger
Software Mentions: 2
Published: over 14 years ago

10.15252/embr.201745680

Active site alanine mutations convert deubiquitinases into high‐affinity ubiquitin‐binding proteins
Cited by: 40
Author(s): Marie E. Morrow, Michael T. Morgan, Marcello Clerici, Kateřina Growková, Ming Yan, David Komander, Titia K. Sixma, Michal Šimíček, Cynthia Wolberger
Software Mentions: 2
Published: about 8 years ago

10.1016/j.jmb.2013.05.024

Characterization of 14-3-3-ζ Interactions with Integrin Tails
Cited by: 29
Author(s): Roman Bonet, Ioannis Vakonakis, Iain D. Campbell
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.ppat.1000723

Structure of the HCMV UL16-MICB Complex Elucidates Select Binding of a Viral Immunoevasin to Diverse NKG2D Ligands
Cited by: 47
Author(s): Susanne Müller, Georg Zocher, Alexander Steinle, Thilo Stehle
Software Mentions: 2
Published: over 16 years ago

10.1016/j.jmb.2011.10.024

Crystal Structure of the VapBC Toxin–Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly
Cited by: 70
Author(s): Christian Dienemann, Andreas Bøggild, Kristoffer Skovbo Winther, Kenn Gerdes, D.E. Brodersen
Software Mentions: 2
Published: almost 15 years ago

10.15252/embr.201847183

Structural basis of <scp>HEAT</scp> ‐kleisin interactions in the human condensin I subcomplex
Cited by: 18
Author(s): Kodai Hara, Kazuhisa Kinoshita, Tomoko Migita, Kei Murakami, Kenichiro Shimizu, K. Takeuchi, Takeshi Hirano, Hiroshi Hashimoto
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jmb.2015.07.014

Structures of the Ultra-High-Affinity Protein–Protein Complexes of Pyocins S2 and AP41 and Their Cognate Immunity Proteins from Pseudomonas aeruginosa
Cited by: 25
Author(s): Amar Joshi, Rhys Grinter, Inokentijs Josts, Sabrina Chen, Justyna Aleksandra Wojdyla, E.D. Lowe, Renata Kaminska, Connor Sharp, Laura C. McCaughey, A.W. Roszak, Richard J. Cogdell, Olwyn Byron, Daniel Walker, Colin Kleanthous
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.ppat.1001210

The Subtilisin-Like Protease AprV2 Is Required for Virulence and Uses a Novel Disulphide-Tethered Exosite to Bind Substrates
Cited by: 77
Author(s): Ruth M. Kennan, Wilson Wong, Om P. Dhungyel, Xiaoyan Han, D. Wong, Dane Parker, Carlos J. Rosado, Ruby H. P. Law, Sheena McGowan, Shane Reeve, Vita Levina, Glenn A. Powers, Robert N. Pike, Stephen P. Bottomley, A. Ian Smith, Ian Marsh, Richard J. Whittington, James C. Whisstock, Corrine Joy Porter, Julian I. Rood
Software Mentions: 2
Published: almost 16 years ago

10.1038/s42003-020-01208-5

Diversity in the intrinsic apoptosis pathway of nematodes
Cited by: 3
Author(s): Neil D. Young, Tiffany J Harris, Marco Evangelista, Sharon Tran, Merridee A. Wouters, Tatiana P. Soares da Costa, Nadia J. Kershaw, Robin B. Gasser, Brian J. Smith, Erinna F. Lee, W. Douglas Fairlie
Software Mentions: 2
Published: about 6 years ago

10.1016/j.jmb.2019.10.005

Paratope Duality and Gullying are Among the Atypical Recognition Mechanisms Used by a Trio of Nanobodies to Differentiate Ebolavirus Nucleoproteins
Cited by: 4
Author(s): Laura J. Sherwood, Alexander B. Taylor, P. John Hart, Andrew Hayhurst
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.jmb.2010.01.035

Structural Basis of Substrate Binding in WsaF, a Rhamnosyltransferase from Geobacillus stearothermophilus
Cited by: 22
Author(s): Kerstin Steiner, Gregor Hagelueken, Paul Messner, Christina Schäffer, James H. Naismith
Software Mentions: 2
Published: over 16 years ago

10.1038/s41422-020-0319-4

Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis
Cited by: 48
Author(s): Guangli Huang, Yanqing Zhang, Xinhui Zhu, Chao Zeng, Qifan Wang, Qiang Zhou, Qinghua Tao, Minhao Liu, Jianlin Lei, Chuangye Yan, Yigong Shi
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jmb.2015.01.012

Structures of Human CCL18, CCL3, and CCL4 Reveal Molecular Determinants for Quaternary Structures and Sensitivity to Insulin-Degrading Enzyme
Cited by: 21
Author(s): Wenyuan Liang, Min Ren, Fan Zhao, Wei-Jen Tang
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.ppat.1002112

A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors
Cited by: 78
Author(s): Tasia M. Pyburn, Barbara A. Bensing, Yan Q. Xiong, Bruce J. Melancon, Thomas Tomasiak, Nicholas J Ward, Victoria Yankovskaya, Kevin Michael Oliver, Gary Cecchini, Gary A. Sulikowski, Matthew J. Tyska, Paul M. Sullam, T.M. Iverson
Software Mentions: 2
Published: about 15 years ago

10.1016/j.jmb.2011.03.047

Interaction of the p53 DNA-Binding Domain with Its N-Terminal Extension Modulates the Stability of the p53 Tetramer
Cited by: 79
Author(s): Eviatar Natan, Çetin Baloğlu, Kevin Pagel, Stefan Freund, Nina Morgner, Carol V. Robinson, Alan R. Fersht, A.C. Joerger
Software Mentions: 2
Published: over 15 years ago

10.1016/j.jmb.2009.07.026

Crystal Structures of Wzb of Escherichia coli and CpsB of Streptococcus pneumoniae, Representatives of Two Families of Tyrosine Phosphatases that Regulate Capsule Assembly
Cited by: 69
Author(s): Gregor Hagelueken, Hexian Huang, Iain L. Mainprize, Chris Whitfield, James H. Naismith
Software Mentions: 2
Published: about 17 years ago

10.1107/S1399004714001308

Automated identification of elemental ions in macromolecular crystal structures
Cited by: 37
Author(s): Nathaniel Echols, Nader Morshed, Pavel V. Afonine, Airlie J. McCoy, Mitchell D. Miller, Randy J. Read, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: almost 11 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: about 11 years ago

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