cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1074/jbc.RA119.010697

Structural basis of cell-surface signaling by a conserved sigma regulator in Gram-negative bacteria
Cited by: 3
Author(s): Jaime L. Jensen, Beau D. Jernberg, Sangita C. Sinha, Christopher L. Colbert
Software Mentions: 3
Published: over 5 years ago

10.15252/embj.2018100825

Diverse roles of TssA‐like proteins in the assembly of bacterial type VI secretion systems
Cited by: 34
Author(s): Johannes Schneider, Sergey Nazarov, Ricardo Adaixo, Martina Liuzzo, Peter David Ringel, Henning Stahlberg, Marek Basler
Software Mentions: 3
Published: almost 6 years ago

10.1080/14756366.2021.1931862

Structure-based virtual screening of highly potent inhibitors of the nematode chitinase CeCht1
Cited by: 7
Author(s): Wei Chen, Qi Chen, Ashutosh Kumar, Xi Jiang, Kam Y. J. Zhang, Qing Yang
Software Mentions: 3
Published: over 4 years ago

10.1016/j.jbc.2021.101061

A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase
Cited by: 7
Author(s): Emily Chen, Krystle Reiss, Dilip Shah, R Manjula, Brandon Allen, Eva Murphy, James W. Murphy, Víctor S. Batista, Vineet Bhandari, Elias Lolis, George P. Lisi
Software Mentions: 3
Published: almost 4 years ago

10.1074/jbc.RA120.012788

Small molecule AX-024 reduces T cell proliferation independently of CD3ϵ/Nck1 interaction, which is governed by a domain swap in the Nck1-SH3.1 domain
Cited by: 10
Author(s): Kirsten Richter, Arne C. Rufer, Magali Muller, Dominique Burger, Fabio Casagrande, Tabea Grossenbacher, Sylwia Huber, Melanie N. Hug, Philipp Koldewey, Andrea D’Osualdo, Daniel Schlatter, Theodor Stoll, M.G. Rudolph
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.17903

A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading
Cited by: 32
Author(s): Chun-Min Shan, Jiyong Wang, Ke Xu, Huijie Chen, Jia-Xing Yue, Stuart Andrews, James J. Moresco, John R. Yates, Péter L. Nagy, Liang Tong, Songtao Jia
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-019-39588-2

The IKK-binding domain of NEMO is an irregular coiled coil with a dynamic binding interface
Cited by: 18
Author(s): Adam H. Barczewski, Michael J. Ragusa, Dale F. Mierke, Maria Pellegrini
Software Mentions: 3
Published: over 6 years ago

10.1038/s42003-021-02518-y

14-3-3 proteins inactivate DAPK2 by promoting its dimerization and protecting key regulatory phosphosites
Cited by: 18
Author(s): Matej Horvath, Olívia Petrvalská, Petr Heřman, Veronika Obšilová, Tomáš Obšil
Software Mentions: 3
Published: almost 4 years ago

10.7554/eLife.59225

Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers
Cited by: 33
Author(s): William Wan, Mairi Clarke, Michael Norris, Larissa Kolesnikova, Alexander Koehler, Zachary A. Bornholdt, Stephan Becker, Erica Ollmann Saphire, John Briggs
Software Mentions: 3
Published: almost 5 years ago

10.1074/jbc.RA119.007709

Structure and interactions of the archaeal motility repression module ArnA–ArnB that modulates archaellum gene expression in Sulfolobus acidocaldarius
Cited by: 15
Author(s): Lena Hoffmann, Katrin Anders, Lisa Franziska Bischof, Xing Ye, Julia Reimann, Sunia Khadouma, Trong Khoa Pham, Chris van der Does, Phillip C. Wright, Lars‐Oliver Essen, Sonja‐Verena Albers
Software Mentions: 3
Published: about 6 years ago

10.1016/j.jbc.2021.100927

Beyond PKA: Evolutionary and structural insights that define a docking and dimerization domain superfamily
Cited by: 3
Author(s): Heather R. Dahlin, Ning Zheng, John D. Scott
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.jmb.2015.10.027

A Substrate Mimic Allows High-Throughput Assay of the FabA Protein and Consequently the Identification of a Novel Inhibitor of Pseudomonas aeruginosa FabA
Cited by: 6
Author(s): L. Moynié, Anthony G. Hope, Kara Finzel, J.W. Schmidberger, Stuart M. Leckie, Günter Schneider, Michael D. Burkart, Andrew D. Smith, David W. Gray, James H. Naismith
Software Mentions: 3
Published: over 9 years ago

10.1016/j.jmb.2013.10.039

Structural Determinants of Unique Properties of Human IgG4-Fc
Cited by: 95
Author(s): Anna M. Davies, Theo Rispens, Pleuni Ooijevaar-de Heer, Hannah J. Gould, Royston Jefferis, Rob C. Aalberse, Brian J. Sutton
Software Mentions: 3
Published: over 11 years ago

10.1063/4.0000087

Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters
Cited by: 4
Author(s): Zhen Su, M. Dasgupta, Frédéric Poitevin, I.I. Mathews, H. van den Bedem, Michael E. Wall, Chun Hong Yoon, Mark A. Wilson
Software Mentions: 3
Published: about 4 years ago

10.1038/s42003-020-01123-9

Structure and function of a malaria transmission blocking vaccine targeting Pfs230 and Pfs230-Pfs48/45 proteins
Cited by: 34
Author(s): Kavita Singh, Martin Burkhardt, Sofia Nakuchima, Raúl Herrera, Olga Muratova, Apostolos G. Gittis, Emily Kelnhofer, Karine Reiter, Margery Smelkinson, Daniel Veltri, Bruce J. Swihart, Richard L. Shimp, Vu Nguyen, Baoshan Zhang, Nicholas J. MacDonald, Patrick E. Duffy, David N. Garboczi, David L. Narum
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.21646

Kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis
Cited by: 57
Author(s): Ashutosh Pudasaini, Jae Sung Shim, Young Hun Song, Hua Shi, Takatoshi Kiba, David E. Somers, Takato Imaizumi, Brian D. Zoltowski
Software Mentions: 3
Published: over 8 years ago

10.1038/s41422-018-0104-9

Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation
Cited by: 71
Author(s): Shuai Zhao, Lan Cheng, Yifei Gao, Baichao Zhang, Xiangdong Zheng, Liang Wang, Pilong Li, Qianwen Sun, Haitao Li
Software Mentions: 3
Published: over 6 years ago

10.1186/s13072-016-0051-y

Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis
Cited by: 51
Author(s): Takashi Urahama, Akihito Harada, Kazuhira Maehara, Naoki Horikoshi, Koichi Sato, Yuko Sato, Koji Shiraishi, Norihiro Sugino, Akihisa Osakabe, Hiroaki Tachiwana, Wataru Kagawa, Hiroshi Kimurâ, Yasuyuki Ohkawa, Hitoshi Kurumizaka
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-39641-0

Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H
Cited by: 13
Author(s): Chang Woo Lee, Sun Ha Park, Chang-Sung Jeong, Sun Mi Shin, Hyun Park, Jun Hyuck Lee
Software Mentions: 3
Published: over 6 years ago

10.1074/jbc.RA118.006045

Structural insights into non-covalent ubiquitin activation of the cIAP1-UbcH5B∼ubiquitin complex
Cited by: 12
Author(s): Amrita Patel, Gary Sibbet, Danny T. Huang
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms21207683

Hydroxylation of Antitubercular Drug Candidate, SQ109, by Mycobacterial Cytochrome P450
Cited by: 12
Author(s): Sergey Bukhdruker, Tatsiana Varaksa, Irina Grabovec, Egor Marin, Polina Shabunya, Maria Kadukova, Sergei Grudinin, Anton Kavaleuski, Anastasiia Gusach, Andrei A. Gilep, Valentin Borshchevskiy, Natallia Strushkevich
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-30154-w

Genome-wide association study and genomic prediction using parental and breeding populations of Japanese pear (Pyrus pyrifolia Nakai)
Cited by: 44
Author(s): Mai F. Minamikawa, Norio Takada, Shingo Terakami, Toshihiro Saito, Akio Onogi, Hiromi Kajiya‐Kanegae, Takeshi Hayashi, Takatsugu Yamamoto, Hiroyoshi Iwata
Software Mentions: 3
Published: almost 7 years ago

10.1111/cea.12230

Human <scp>I</scp> g <scp>E</scp> against the major allergen <scp>B</scp> et v 1 – defining an epitope with limited cross‐reactivity between different <scp>PR</scp> ‐10 family proteins
Cited by: 20
Author(s): Mattias Levin, Anna M. Davies, Maria Liljekvist, Fredrika Carlsson, Hannah J. Gould, Brian J. Sutton, Mats Ohlin
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-018-37522-6

MITF has a central role in regulating starvation-induced autophagy in melanoma
Cited by: 60
Author(s): Katrín Möller, Sara Sigurbjörnsdóttir, Asgeir Ö. Arnthórsson, Vivian Pogenberg, Ramile Dilshat, Valerie Fock, Sólveig Hlín Brynjólfsdóttir, Christian Bindesbøll, M. Bessadóttir, Helga M. Ögmundsdóttir, Anne Simonsen, Lionel Larue, Matthias Wilmanns, Vésteinn Thórsson, Eiríkur Steingrimsson, Margrét H. Ögmundsdóttir
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22168631

The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales
Cited by: 5
Author(s): Marie-Caroline Müller, T. Wagner
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-40432-w

Reactive centre loop dynamics and serpin specificity
Cited by: 28
Author(s): Emilia M. Marijanovic, James Fodor, Blake T. Riley, Benjamin T. Porebski, Maurício G. S. Costa, Itamar Kass, David E. Hoke, Sheena McGowan, Ashley M. Buckle
Software Mentions: 3
Published: over 6 years ago

10.1016/j.str.2013.10.013

Structure and Self-Assembly of the Calcium Binding Matrix Protein of Human Metapneumovirus
Cited by: 45
Author(s): C. Leyrat, Max Renner, K. Harlos, Juha T. Huiskonen, Jonathan M. Grimes
Software Mentions: 3
Published: over 11 years ago

10.1016/j.jsb.2020.107545

Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
Cited by: 72
Author(s): Kailash Ramlaul, Colin M. Palmer, Takanori Nakane, C.H.S. Aylett
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-33193-5

Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas
Cited by: 10
Author(s): Hong‐Hsiang Guan, Yin-Cheng Hsieh, Po‐Chun Lin, Yen‐Chieh Huang, Masato Yoshimura, Liying Chen, Shao-Kang Chen, Phimonphan Chuankhayan, Chien-Chih Lin, Nai-Chi Chen, Atsushi Nakagawa, Sunney I. Chan, Chun‐Jung Chen
Software Mentions: 3
Published: almost 7 years ago

10.1074/jbc.RA118.004469

Discovery of peptide ligands targeting a specific ubiquitin-like domain–binding site in the deubiquitinase USP11
Cited by: 24
Author(s): Anastasios Spiliotopoulos, Lia Blokpoel Ferreras, Ruth M Densham, Simon G. Caulton, Ben C. Maddison, Joanna R. Morris, James E. Dixon, Kevin C. Gough, Ingrid Dreveny
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-29058-6

Structural determinants of specificity and regulation of activity in the allosteric loop network of human KLK8/neuropsin
Cited by: 7
Author(s): Mekdes Debela, Viktor Magdolen, Wolfgang Skala, Brigitta Elsässer, Eric L. Schneider, Charles S. Craik, Martin L. Biniossek, Oliver Schilling, Wolfram Bode, Hans Brandstetter, Peter Goettig
Software Mentions: 3
Published: about 7 years ago

10.1016/j.jbc.2021.100700

ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis
Cited by: 8
Author(s): Jitender Mehla, George W. Liechti, Randy M. Morgenstein, J. Harry Caufield, Ali Hosseinnia, Alla Gagarinova, Sadhna Phanse, Norman Goodacre, Mary R. Brockett, Neha Sakhawalkar, Mohan Babu, Rong Xiao, Gaetano T. Montelione, S.M. Vorobiev, T. den Blaauwen, J.F. Hunt, Peter Uetz
Software Mentions: 3
Published: over 4 years ago

10.1016/j.jbc.2021.100743

From integrative structural biology to cell biology
Cited by: 38
Author(s): Andrej Šali
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.60552

Cryo-EM analysis of PIP2 regulation in mammalian GIRK channels
Cited by: 43
Author(s): Yiming Niu, Xiao Tao, Kouki K Touhara, Roderick MacKinnon
Software Mentions: 3
Published: almost 5 years ago

10.15252/embj.2021107985

Neutralization of SARS‐CoV‐2 by highly potent, hyperthermostable, and mutation‐tolerant nanobodies
Cited by: 56
Author(s): Thomas Güttler, Metin Aksu, Antje Dickmanns, Kim M. Stegmann, Kathrin Gregor, Renate Rees, Waltraud Taxer, Oleh Rymarenko, Jürgen Schünemann, Christian Dienemann, Philip Gunkel, Bianka Mußil, Jens Krull, Ulrike Teichmann, Uwe Groß, Volker C. Cordes, Matthias Dobbelstein, Dirk Görlich
Software Mentions: 3
Published: almost 4 years ago

10.1098/rsob.160292

Structural, mechanistic and functional insight into gliotoxin bis -thiomethylation in Aspergillus fumigatus
Cited by: 32
Author(s): Stephen K. Dolan, Thomas Böck, Vanessa Hering, Rebecca A. Owens, Gary W. Jones, Wulf Blankenfeldt, Seán Doyle
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-29664-4

Structural basis for selective inhibition of immunoglobulin E-receptor interactions by an anti-IgE antibody
Cited by: 20
Author(s): Jiun-Bo Chen, Faruk Ramadani, M.O.Y. Pang, Rebecca L. Beavil, Mary D. Holdom, A.N. Mitropoulou, Andrew J. Beavil, Hannah J. Gould, Tse Wen Chang, Brian J. Sutton, James M. McDonnell, Anna M. Davies
Software Mentions: 3
Published: almost 7 years ago

10.1074/jbc.M116.730382

Structural Insights into the Polyphyletic Origins of Glycyl tRNA Synthetases
Cited by: 14
Author(s): Marco Igor Valencia-Sánchez, Annia Rodríguez‐Hernández, Ruben Ferreira, Hugo A. Santamaría-Suárez, Marcelino Arciniega, Anne-Catherine Dock-Brégeon, Dino Moras, Brice Beinsteiner, Haydyn D. T. Mertens, Dmitri I. Svergun, Luis G. Brieba, Morten Grøtli, Alfredo Torres‐Larios
Software Mentions: 3
Published: about 9 years ago

10.1074/jbc.M115.705863

Inhibition of PRL-2·CNNM3 Protein Complex Formation Decreases Breast Cancer Proliferation and Tumor Growth
Cited by: 38
Author(s): Elie Kostantin, Serge Hardy, William C. Valinsky, Andreas Kompatscher, Jeroen H. F. de Baaij, Yevgen Zolotarov, Mélissa Landry, Noriko Uetani, Luis Alfonso Martínez-Cruz, Joost G. J. Hoenderop, Alvin Shrier, Michel L. Tremblay
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.ppat.1003754

The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies
Cited by: 165
Author(s): Devin Sok, Uri Laserson, Jonathan Laserson, Yiping Liu, François Vigneault, Jean-Philippe Julien, Bryan Briney, Alejandra Ramos, Karen Saye, Khoa Le, Alison E. Mahan, Shenshen Wang, Mehran Kardar, Gur Yaari, Laura M. Walker, Birgitte B. Simen, Elizabeth St. John, Po-Ying Chan-Hui, Kristine M. Swiderek, Stephen H. Kleinstein, Galit Alter, Michael S. Seaman, Arup K. Chakraborty, Daphne Koller, Ian A. Wilson, George M. Church, Dennis R. Burton, Pascal Poignard
Software Mentions: 3
Published: over 11 years ago

10.1098/rsob.120142

Structure and function of cytidine monophosphate kinase from Yersinia pseudotuberculosis , essential for virulence but not for survival
Cited by: 11
Author(s): Nicola Walker, Elizabeth A. Clark, Donna C. Ford, Helen L. Bullifent, Erin V. McAlister, Melanie Duffield, K. Ravi Acharya, Petra C. F. Oyston
Software Mentions: 2
Published: over 12 years ago

10.1186/s12951-019-0512-0

Design and site-directed compartmentalization of gold nanoclusters within the intrasubunit interfaces of ferritin nanocage
Cited by: 16
Author(s): Jiachen Zang, Bowen Zheng, Xiuqing Zhang, Paolo Arosio, Guanghua Zhao
Software Mentions: 2
Published: about 6 years ago

10.1098/rsob.150128

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA
Cited by: 22
Author(s): Akihisa Osakabe, Fumiya Adachi, Yasuhiro Arimura, Kazuhira Maehara, Yasuyuki Ohkawa, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms22136859

Sub-3 Å Cryo-EM Structures of Necrosis Virus Particles via the Use of Multipurpose TEM with Electron Counting Camera
Cited by: 1
Author(s): Chun-Hsiung Wang, Donghua Chen, Shih-Hsin Huang, Yimin A. Wu, Yiyun Chen, Y. Hwu, David Bushnell, Roger D. Kornberg, Wen Ho Chang
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms21165915

Biochemical Characterization and Crystal Structure of a Novel NAD+-Dependent Isocitrate Dehydrogenase from Phaeodactylum tricornutum
Cited by: 5
Author(s): Shiping Huang, Luchun Zhou, Bin Wen, Peng Wang
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22063219

Crystal Structure of a Phospholipase D from the Plant-Associated Bacteria Serratia plymuthica Strain AS9 Reveals a Unique Arrangement of Catalytic Pocket
Cited by: 7
Author(s): Fanghua Wang, Siyu Liu, Xuejing Mao, Ruiguo Cui, Bo Yang, Yonghua Wang
Software Mentions: 2
Published: over 4 years ago

10.1098/rsob.160053

Structure of astrotactin-2: a conserved vertebrate-specific and perforin-like membrane protein involved in neuronal development
Cited by: 28
Author(s): Ni Tien, K. Harlos, Robert J.C. Gilbert
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms21010083

The Structure of Sucrose-Soaked Levansucrase Crystals from Erwinia tasmaniensis reveals a Binding Pocket for Levanbiose
Cited by: 14
Author(s): Ivan Polsinelli, Rosanna Caliandro, Nicola Demitri, Stefano Benini
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms18071336

Quinolin-6-Yloxyacetamides Are Microtubule Destabilizing Agents That Bind to the Colchicine Site of Tubulin
Cited by: 9
Author(s): Ashwani Sharma, Gonzalo Sáez-Calvo, Natacha Olieric, Francisco de Asís Balaguer, Isabel Barasoaín, Clemens Lamberth, J. Fernando Díaz, Michel O. Steinmetz
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms21072600

Structural Characterization of an ACP from Thermotoga maritima: Insights into Hyperthermal Adaptation
Cited by: 8
Author(s): Yeongjoon Lee, Ahjin Jang, Min‐Cheol Jeong, Nuri Park, Jungwoo Park, Woo Cheol Lee, Chaejoon Cheong, Yangmee Kim
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.28020

A novel central nervous system-penetrating protease inhibitor overcomes human immunodeficiency virus 1 resistance with unprecedented aM to pM potency
Cited by: 39
Author(s): Manabu Aoki, Hironori Hayashi, Kalapala Venkateswara Rao, Debananda Das, Nobuyo Higashi-Kuwata, Haydar Bulut, Hiromi Aoki-Ogata, Yuki Takamatsu, Ravikiran S. Yedidi, David A. Davis, Shin Hattori, Noriko Nishida, Kazuya Hasegawa, Nobutoki Takamune, Prasanth R. Nyalapatla, Heather L. Osswald, Hirofumi Jono, Hideyuki Saya, Robert Yarchoan, Shogo Misumi, Arun K. Ghosh, Hiroaki Mitsuya
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.22679

Evolution of substrate specificity in a retained enzyme driven by gene loss
Cited by: 21
Author(s): Ana Lilia Juárez-Vázquez, Janaka N. Edirisinghe, E.A. Verduzco-Castro, K. Michalska, Chenggang Wu, Lianet Noda-García, G. Babnigg, M. Endres, Sofía Medina-Ruiz, Julián Santoyo-Flores, Mauricio Carrillo‐Tripp, Hung Ton‐That, A. Joachimiak, Christopher S. Henry, Francisco Barona‐Gómez
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.57887

The architecture of EMC reveals a path for membrane protein insertion
Cited by: 72
Author(s): John P. O’Donnell, Ben P. Phillips, Yuichi Yagita, Szymon Juszkiewicz, Armin Wagner, Duccio Malinverni, Robert J. Keenan, Elizabeth A. Miller, Ramanujan S. Hegde
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21093332

Polysaccharide-Based Injection Matrix for Serial Crystallography
Cited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 2
Published: about 5 years ago

10.1098/rsob.160090

Structural and biochemical analyses of monoubiquitinated human histones H2B and H4
Cited by: 32
Author(s): Shuichi Machida, Satoshi Sekine, Yuka Nishiyama, Naoki Horikoshi, Hitoshi Kurumizaka
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.52774

Structures of the ATP-fueled ClpXP proteolytic machine bound to protein substrate
Cited by: 94
Author(s): Fei X, Tristan A Bell, Simon Jenni, Benjamin M. Stinson, T.A. Baker, Stephen C. Harrison, Robert T. Sauer
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.51492

Structural basis of substrate recognition by a polypeptide processing and secretion transporter
Cited by: 23
Author(s): Virapat Kieuvongngam, Paul Dominic B. Olinares, Anthony Palillo, Michael L. Oldham, Brian T. Chait, Jue Chen
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.02375

AFF4 binding to Tat-P-TEFb indirectly stimulates TAR recognition of super elongation complexes at the HIV promoter
Cited by: 44
Author(s): Ursula Schulze‐Gahmen, Huasong Lu, Qiang Zhou, Tom Alber
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.32893

IRS-1 acts as an endocytic regulator of IGF-I receptor to facilitate sustained IGF signaling
Cited by: 39
Author(s): Yoshimasa Yoneyama, Peter Lanzerstorfer, Hideaki Niwa, Takashi Umehara, Takashi Shibano, Shigeyuki Yokoyama, Kazuhiro Chida, Julian Weghuber, Fumihiko Hakuno, Shinichiro Takahashi
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.44353

Phosphorylation-mediated interactions with TOPBP1 couple 53BP1 and 9-1-1 to control the G1 DNA damage checkpoint
Cited by: 33
Author(s): Nicolas Bigot, Matthew Day, Robert A. Baldock, Felicity Z. Watts, Antony W. Oliver, Laurence H. Pearl
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.68710

Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation
Cited by: 34
Author(s): P. Kolata, Rouslan G. Efremov
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.43229

Structural basis of Ca2+-dependent activation and lipid transport by a TMEM16 scramblase
Cited by: 81
Author(s): Maria Falzone, Jan Rheinberger, B.C. Lee, Thasin Peyear, Linda Sasset, Ashleigh M. Raczkowski, Edward T. Eng, Annarita Di Lorenzo, Olaf S. Andersen, Crina M. Nimigean, Alessio Accardi
Software Mentions: 2
Published: over 6 years ago

10.15252/embj.2020105908

Structure and elevator mechanism of the mammalian sodium/proton exchanger NHE9
Cited by: 27
Author(s): Iven Winkelmann, Ryota Matsuoka, Pascal Meier, Denis Shutin, Chen‐Ou Zhang, Laura Orellana, Ricky Sexton, Michael Landreh, Carol V. Robinson, Oliver Beckstein, David Drew
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.00482

Mechanism for priming DNA synthesis by yeast DNA Polymerase α
Cited by: 89
Author(s): Rajika L. Perera, Rubben Torella, Sebastian Klinge, M.L. Kilkenny, Joseph D. Maman, Luca Pellegrini
Software Mentions: 2
Published: over 12 years ago

10.7554/eLife.42150

Structural organization of a major neuronal G protein regulator, the RGS7-Gβ5-R7BP complex
Cited by: 17
Author(s): Dipak N. Patil, Erumbi S. Rangarajan, Scott J. Novick, Bruce D. Pascal, D.J. Kojetin, Patrick R. Griffin, Tina Izard, Kirill A. Martemyanov
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.33274

Structural basis of proton translocation and force generation in mitochondrial ATP synthase
Cited by: 56
Author(s): N. Klusch, Bonnie J. Murphy, Deryck J. Mills, Özkan Yıldız, Werner Kühlbrandt
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.03604

Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters
Cited by: 49
Author(s): Z.L. Johnson, Jun-Ho Lee, Kiyoun Lee, Minhee Lee, Deok-Ho Kwon, Jiyong Hong, Seok‐Yong Lee
Software Mentions: 2
Published: almost 11 years ago

10.7554/eLife.02217

Structural basis for the assembly of the mitotic motor Kinesin-5 into bipolar tetramers
Cited by: 62
Author(s): Jonathan M. Scholey, Stanley Nithianantham, Jonathan M. Scholey, Jawdat Al-Bassam
Software Mentions: 2
Published: over 11 years ago

10.1038/s42003-021-02068-3

Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin
Cited by: 5
Author(s): Miho Watanabe-Takahashi, Masakazu Tamada, Masuo Senda, M. Hibino, Eihan Shimizu, Akiko Okuta, Atsuo Miyazawa, Toshiya Senda, Kiyotaka Nishikawa
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.56451

Characterization of the kinetic cycle of an ABC transporter by single-molecule and cryo-EM analyses
Cited by: 47
Author(s): Ling Wang, Z.L. Johnson, Mark Wasserman, Jesper Levring, Jue Chen, Shixin Liu
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.02057

Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network
Cited by: 111
Author(s): Jerome C. Nwachukwu, Sathish Srinivasan, Nelson E. Bruno, A.A. Parent, Travis S. Hughes, Julie A. Pollock, Olsi Gjyshi, V. Cavett, J. Nowak, Rubén D. Garcia-Ordoñez, René Houtman, Patrick R. Griffin, D.J. Kojetin, John A. Katzenellenbogen, Michael D. Conkright, K.W. Nettles
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.06792

Acidic pH and divalent cation sensing by PhoQ are dispensable for systemic salmonellae virulence
Cited by: 26
Author(s): Kevin G. Hicks, Scott P. Delbecq, Enea Sancho‐Vaello, Marie-Pierre Blanc, Katja K. Dove, Lynne R. Prost, Margaret E. Daley, Kornelius Zeth, Rachel E. Klevit, Samuel I. Miller
Software Mentions: 2
Published: about 10 years ago

10.1080/10717544.2018.1428245

HSA-based multi-target combination therapy: regulating drugs’ release from HSA and overcoming single drug resistance in a breast cancer model
Cited by: 31
Author(s): Yanzi Gou, Zhenlei Zhang, Dongyang Li, Lei Zhao, Meiling Cai, Zhigang Sun, Yongping Li, Yao Zhang, Hina Khan, Hongbing Sun, Tao Wang, Hong Liang, Feng Yang
Software Mentions: 2
Published: over 7 years ago

10.1016/j.jbc.2021.100771

Structural basis of KdpD histidine kinase binding to the second messenger c-di-AMP
Cited by: 11
Author(s): Avijit Dutta, Mona Batish, Vijay Parashar
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.17983

Structures of TorsinA and its disease-mutant complexed with an activator reveal the molecular basis for primary dystonia
Cited by: 53
Author(s): F. Esra Demircioglu, Brian A Sosa, Jessica R. Ingram, Hidde L. Ploegh, Thomas Schwartz
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.jbc.2021.101001

Structural and functional analysis of gum arabic l-rhamnose-α-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family
Cited by: 3
Author(s): Tatsuya Kondo, Miyu Kichijo, Akiho Maruta, Makoto Nakaya, Shigeo Takenaka, T. Arakawa, Shinya Fushinobu, Tatsuji Sakamoto
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41422-020-0319-4

Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis
Cited by: 48
Author(s): Guangli Huang, Yanqing Zhang, Xinhui Zhu, Chao Zeng, Qifan Wang, Qiang Zhou, Qinghua Tao, Minhao Liu, Jianlin Lei, Chuangye Yan, Yigong Shi
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-020-01147-1

Molecular basis of the lipid-induced MucA-MucB dissociation in Pseudomonas aeruginosa
Cited by: 6
Author(s): Tao Li, Libang He, Changcheng Li, Mei Kang, Yingjie Song, Yuanfeng Zhu, Yanjiao Shen, Ninglin Zhao, Chang Zhao, Jing Yang, Qin Huang, Xingyu Mou, Aiping Tong, Jinliang Yang, Zhenling Wang, Chengjie Ji, Hong Li, Hong Tang, Rui Bao
Software Mentions: 2
Published: almost 5 years ago

10.15252/embj.2018101414

Coupling of ATPase activity, microtubule binding, and mechanics in the dynein motor domain
Cited by: 19
Author(s): Stefan Niekamp, Nicolas Coudray, Nan Zhang, Ronald D. Vale, Gira Bhabha
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-021-02326-4

Structure-based insights into evolution of rhodopsins
Cited by: 13
Author(s): Dmitrii Zabelskii, Natalia I. Dmitrieva, Oleksandr Volkov, Vitaly Shevchenko, Kirill Kovalev, Taras Balandin, Dmytro Soloviov, Roman Astashkin, Egor V. Zinovev, Alexey Alekseev, Ekaterina Round, Vitaly Polovinkin, Igor Chizhov, Andrey Rogachev, Ivan Okhrimenko, Valentin Borshchevskiy, Vladimir Chupin, Georg Büldt, Natalia Yutin, Ernst Bamberg, Eugene V. Koonin, Valentin Gordeliy
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.62518

Structure of bacterial phospholipid transporter MlaFEDB with substrate bound
Cited by: 42
Author(s): Nicolas Coudray, Georgia L. Isom, M.R. MacRae, Mariyah N. Saiduddin, Gira Bhabha, D.C. Ekiert
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.49439

Decoding WW domain tandem-mediated target recognitions in tissue growth and cell polarity
Cited by: 33
Author(s): Zhijie Lin, Yang Zhou, Ruiling Xie, Zeyang Ji, Kun‐Liang Guan, Mingjie Zhang
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.06074

Autoinhibition of Bruton's tyrosine kinase (Btk) and activation by soluble inositol hexakisphosphate
Cited by: 74
Author(s): Qi Wang, Erik Vogan, Laura M. Nocka, Connor Rosen, Julie A. Zorn, Stephen C. Harrison, John Kuriyan
Software Mentions: 2
Published: over 10 years ago

10.15252/embj.2020106164

Cryo‐EM reveals the complex architecture of dynactin's shoulder region and pointed end
Cited by: 15
Author(s): C.K. Lau, Francis J. O’Reilly, S. Balaji, Samuel E Lacey, Juri Rappsilber, Andrew P. Carter
Software Mentions: 2
Published: over 4 years ago

10.15252/embj.2019103234

Structural basis for centromere maintenance by Drosophila <scp>CENP</scp> ‐A chaperone <scp>CAL</scp> 1
Cited by: 27
Author(s): Bethan Medina‐Pritchard, Vasiliki Lazou, Juan Zou, Olwyn Byron, Maria Alba Abad, Juri Rappsilber, Patrick Heun, A. Arockia Jeyaprakash
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.42400

DNA translocation mechanism of an XPD family helicase
Cited by: 32
Author(s): Kaiying Cheng, Dale B. Wigley
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.21510

Structural insights into the mechanism of the DEAH-box RNA helicase Prp43
Cited by: 75
Author(s): M.J. Tauchert, Jean‐Baptiste Fourmann, Reinhard Lührmann, Ralf Ficner
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms17040446

Structure of the PLP-Form of the Human Kynurenine Aminotransferase II in a Novel Spacegroup at 1.83 Å Resolution
Cited by: 13
Author(s): Alireza Nematollahi, Guorong Sun, S.J. Harrop, Jane R. Hanrahan, W. Bret Church
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1002112

A Structural Model for Binding of the Serine-Rich Repeat Adhesin GspB to Host Carbohydrate Receptors
Cited by: 78
Author(s): Tasia M. Pyburn, Barbara A. Bensing, Yan Q. Xiong, Bruce J. Melancon, Thomas Tomasiak, Nicholas J Ward, Victoria Yankovskaya, Kevin Michael Oliver, Gary Cecchini, Gary A. Sulikowski, Matthew J. Tyska, Paul M. Sullam, T.M. Iverson
Software Mentions: 2
Published: about 14 years ago

10.3390/ijms20071533

The Molecular and Structural Basis of O-methylation Reaction in Coumarin Biosynthesis in Peucedanum praeruptorum Dunn
Cited by: 13
Author(s): Yucheng Zhao, Nana Wang, Ziwei Sui, C.H. Huang, Zhixiong Zeng, Ling‐Yi Kong
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20246279

Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4
Cited by: 13
Author(s): Paula Giménez-Mascarell, Iker Oyenarte, Irene González‐Recio, Carmen Fernández‐Rodríguez, María Ángeles Corral-Rodríguez, Igone Campos-Zarraga, Jorge Simón, Elie Kostantin, Serge Hardy, Antonio Díaz-Quintana, Mara Zubillaga Lizeaga, Nekane Merino, Tammo Diercks, Francisco J. Blanco, Irene Dίaz–Moreno, María Luz Martínez‐Chantar, Michel L. Tremblay, Dominik Müller, Dritan Siliqi, Luis Alfonso Martínez-Cruz
Software Mentions: 2
Published: over 5 years ago

10.1002/cbic.201800462

Structure and Catalytic Mechanism of a Bacterial Friedel–Crafts Acylase
Cited by: 23
Author(s): Tea Pavkov‐Keller, Nina G. Schmidt, Anna Żądło‐Dobrowolska, Wolfgang Kroutil, Karl Gruber
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21197081

Impact of HLA-DR Antigen Binding Cleft Rigidity on T Cell Recognition
Cited by: 5
Author(s): Christopher Szeto, Joseph Bloom, Hannah Sloane, Christian A. Lobos, James Fodor, Dhilshan Jayasinghe, D.S.M. Chatzileontiadou, Emma J. Grant, Ashley M. Buckle, Stéphanie Gras
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22094769

Crystal Structure of Escherichia coli Agmatinase: Catalytic Mechanism and Residues Relevant for Substrate Specificity
Cited by: 4
Author(s): Pablo Maturana, Marı́a S. Orellana, Sixto M. Herrera, Ignacio Martı́nez, Maximiliano Figueroa, José Martínez‐Oyanedel, Víctor Castro‐Fernández, Elena Uribe
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms22136830

‘All That Glitters Is Not Gold’: High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses
Cited by: 6
Author(s): Sohini Chakraborti, Kaushik Hatti, Narayanaswamy Srinivasan
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms22179140

Structural and Functional Characterizations of Cancer Targeting Nanoparticles Based on Hepatitis B Virus Capsid
Cited by: 0
Author(s): Yunseok Heo, Hyomin Jeong, Youngki Yoo, Ji-Hye Yun, Bumhan Ryu, Young-je Cha, Boram Lee, Ye-Eun Jeon, Jongmin Kim, S.-H. Jeong, Eunji Jo, Jae Sung Woo, Jeewon Lee, Hyun-Soo Cho, Weontae Lee
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms221910862

Loops around the Heme Pocket Have a Critical Role in the Function and Stability of BsDyP from Bacillus subtilis
Cited by: 7
Author(s): Carolina Rodrigues, Patrícia T. Borges, Magalí F. Scocozza, Diogo Silva, André Taborda, Vânia Brissos, Carlos Frazão, Lı́gia O. Martins
Software Mentions: 2
Published: almost 4 years ago

10.18632/oncotarget.21652

Structural basis of the therapeutic anti-PD-L1 antibody atezolizumab
Cited by: 54
Author(s): Fei Zhang, Xiaoqiang Qi, Xiaoxiao Wang, Diyang Wei, Jiawei Wu, Lingling Feng, Haiyan Cai, Yugang Wang, Naiyan Zeng, Ting Xu, Aiwu Zhou, Ying Zheng
Software Mentions: 2
Published: almost 8 years ago

10.1155/2017/4342789

Identification, Characterization, and Structure of Tm16 fromTrichuris muris
Cited by: 10
Author(s): Zhuyun Liu, Alan Kelleher, Shanii Tabb, Junfei Wei, Jeroen Pollet, Peter J. Hotez, María Elena Bottazzi, Bin Zhan, Oluwatoyin A. Asojo
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.41028

Molecular basis of synaptic specificity by immunoglobulin superfamily receptors in Drosophila
Cited by: 31
Author(s): Sibo Cheng, James A. Ashley, J.D. Kurleto, Meike Lobb-Rabe, Yeonhee Jenny Park, Robert A. Carrillo, Engin Özkan
Software Mentions: 2
Published: over 6 years ago

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Papers Mentioning PHENIX 2,287