cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1093/aobpla/plw042

Experimental assessment of factors mediating the naturalization of a globally invasive tree on sandy coastal plains: a case study from Brazil
Cited by: 10
Author(s): Thalita Gabriella Zimmermann, Antônio Carlos Silva de Andrade, David M. Richardson
Software Mentions: 3
Published: about 11 years ago

10.1107/S090744491301576X

Complex structure of type VI peptidoglycan muramidase effector and a cognate immunity protein
Cited by: 17
Author(s): Tianyu Wang, Jingjin Ding, Ying Zhang, Dacheng Wang, Wei Liu
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0022767

X-Ray Structure Reveals a New Class and Provides Insight into Evolution of Alkaline Phosphatases
Cited by: 18
Author(s): Subhash C. Bihani, Amit Kumar Das, Kayzad Nilgiriwala, Vishal Prashar, Michel Pirocchi, Shree Kumar Apte, Jean‐Luc Ferrer, M.V. Hosur
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pone.0080947

Crystal Structures of the Human G3BP1 NTF2-Like Domain Visualize FxFG Nup Repeat Specificity
Cited by: 43
Author(s): T. Vognsen, Ingvar R. Möller, Ole Kristensen
Software Mentions: 3
Published: over 12 years ago

10.1107/S1399004715004514

Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams
Cited by: 112
Author(s): Nicolas Coquelle, Aaron S. Brewster, U. Kapp, Anastasya Shilova, Britta Weinhausen, Manfred Burghammer, J.P. Colletier
Software Mentions: 3
Published: over 11 years ago

10.1074/jbc.M114.621789

Complex Structure and Biochemical Characterization of the Staphylococcus aureus Cyclic Diadenylate Monophosphate (c-di-AMP)-binding Protein PstA, the Founding Member of a New Signal Transduction Protein Family
Cited by: 47
Author(s): Ivan Campeotto, Yong Everett Zhang, Miroslav Mladenov, Paul S. Freemont, Angelika Gründling
Software Mentions: 3
Published: over 11 years ago

10.1107/S2052252519007668

Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder
Cited by: 10
Author(s): Jeong Kuk Park, Keon Young Kim, Yeo Won Sim, Young Dong Kim, Jin Kyun Kim, Cheol Lee, Jeongran Han, Chae Un Kim, J. Eugene Lee, SangYoun Park
Software Mentions: 3
Published: about 7 years ago

10.1016/j.jmb.2015.08.023

Atomic-Resolution Structures of the APC/C Subunits Apc4 and the Apc5 N-Terminal Domain
Cited by: 9
Author(s): Nora Cronin, Jing Yang, Ziguo Zhang, Kiran Kulkarni, Leifu Chang, Hiroyuki Yamano, David Barford
Software Mentions: 3
Published: almost 11 years ago

10.1016/j.jmb.2015.10.027

A Substrate Mimic Allows High-Throughput Assay of the FabA Protein and Consequently the Identification of a Novel Inhibitor of Pseudomonas aeruginosa FabA
Cited by: 6
Author(s): L. Moynié, Anthony G. Hope, Kara Finzel, J.W. Schmidberger, Stuart M. Leckie, Günter Schneider, Michael D. Burkart, Andrew D. Smith, David W. Gray, James H. Naismith
Software Mentions: 3
Published: over 10 years ago

10.1016/j.jmb.2013.10.039

Structural Determinants of Unique Properties of Human IgG4-Fc
Cited by: 95
Author(s): Anna M. Davies, Theo Rispens, Pleuni Ooijevaar-de Heer, Hannah J. Gould, Royston Jefferis, Rob C. Aalberse, Brian J. Sutton
Software Mentions: 3
Published: over 12 years ago

10.1186/s13045-020-00979-y

Discovery of a dual inhibitor of NQO1 and GSTP1 for treating glioblastoma
Cited by: 28
Author(s): Kecheng Lei, Xiaoxia Gu, Alvaro G. Alvarado, Yuhong Du, Shilin Luo, Eun Hee Ahn, Seong Su Kang, Bing Ji, Xia Liu, Hui Mao, Haian Fu, Harley I. Kornblum, Lingjing Jin, Li Hua, Keqiang Ye
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.str.2013.10.013

Structure and Self-Assembly of the Calcium Binding Matrix Protein of Human Metapneumovirus
Cited by: 45
Author(s): C. Leyrat, Max Renner, K. Harlos, Juha T. Huiskonen, Jonathan M. Grimes
Software Mentions: 3
Published: over 12 years ago

10.1063/4.0000087

Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters
Cited by: 4
Author(s): Zhen Su, M. Dasgupta, Frédéric Poitevin, I.I. Mathews, H. van den Bedem, Michael E. Wall, Chun Hong Yoon, Mark A. Wilson
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1005165

Structure Elucidation of Coxsackievirus A16 in Complex with GPP3 Informs a Systematic Review of Highly Potent Capsid Binders to Enteroviruses
Cited by: 19
Author(s): Luigi De Colibus, Xiangxi Wang, Aloys Tijsma, Johan Neyts, John A. B. Spyrou, Jingshan Ren, Jonathan M. Grimes, Gerhard Puerstinger, Pieter Leyssen, Elizabeth E. Fry, Zihe Rao, David I. Stuart
Software Mentions: 3
Published: almost 11 years ago

10.7554/eLife.60552

Cryo-EM analysis of PIP2 regulation in mammalian GIRK channels
Cited by: 43
Author(s): Yiming Niu, Xiao Tao, Kouki K Touhara, Roderick MacKinnon
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-68419-y

Enzymatic reaction mechanism of cis-aconitate decarboxylase based on the crystal structure of IRG1 from Bacillus subtilis
Cited by: 8
Author(s): Hye Lin Chun, So Yeon Lee, Sung Hoon Lee, Chang Sup Lee, Hyun Ho Park
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-019-52825-y

A host dTMP-bound structure of T4 phage dCMP hydroxymethylase mutant using an X-ray free electron laser
Cited by: 2
Author(s): Si Hoon Park, Jaehyun Park, Sang Jae Lee, Woo Seok Yang, Sehan Park, Kyungdo Kim, Zee Yong Park, Hyun Kyu Song
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.ppat.1006448

Structure of the Neisseria Adhesin Complex Protein (ACP) and its role as a novel lysozyme inhibitor
Cited by: 18
Author(s): María Victoria Humbert, Amaka M. Awanye, Lu Lian, Jeremy P. Derrick, Myron Christodoulides
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.ppat.1004795

The Aspartate-Less Receiver (ALR) Domains: Distribution, Structure and Function
Cited by: 25
Author(s): Andrew J. Maule, David P. Wright, Joshua Weiner, Lu Han, Francis C. Peterson, Brian F. Volkman, N.R. Silvaggi, Andrew T. Ulijasz
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-019-40432-w

Reactive centre loop dynamics and serpin specificity
Cited by: 28
Author(s): Emilia M. Marijanovic, James Fodor, Blake T. Riley, Benjamin T. Porebski, Maurício G. S. Costa, Itamar Kass, David E. Hoke, Sheena McGowan, Ashley M. Buckle
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-39588-2

The IKK-binding domain of NEMO is an irregular coiled coil with a dynamic binding interface
Cited by: 18
Author(s): Adam H. Barczewski, Michael J. Ragusa, Dale F. Mierke, Maria Pellegrini
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-39641-0

Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H
Cited by: 13
Author(s): Chang Woo Lee, Sun Ha Park, Chang-Sung Jeong, Sun Mi Shin, Hyun Park, Jun Hyuck Lee
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.17903

A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading
Cited by: 32
Author(s): Chun-Min Shan, Jiyong Wang, Ke Xu, Huijie Chen, Jia-Xing Yue, Stuart Andrews, James J. Moresco, John R. Yates, Péter L. Nagy, Liang Tong, Songtao Jia
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-018-37522-6

MITF has a central role in regulating starvation-induced autophagy in melanoma
Cited by: 60
Author(s): Katrín Möller, Sara Sigurbjörnsdóttir, Asgeir Ö. Arnthórsson, Vivian Pogenberg, Ramile Dilshat, Valerie Fock, Sólveig Hlín Brynjólfsdóttir, Christian Bindesbøll, M. Bessadóttir, Helga M. Ögmundsdóttir, Anne Simonsen, Lionel Larue, Matthias Wilmanns, Vésteinn Thórsson, Eiríkur Steingrimsson, Margrét H. Ögmundsdóttir
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-33193-5

Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas
Cited by: 10
Author(s): Hong‐Hsiang Guan, Yin-Cheng Hsieh, Po‐Chun Lin, Yen‐Chieh Huang, Masato Yoshimura, Liying Chen, Shao-Kang Chen, Phimonphan Chuankhayan, Chien-Chih Lin, Nai-Chi Chen, Atsushi Nakagawa, Sunney I. Chan, Chun‐Jung Chen
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-30154-w

Genome-wide association study and genomic prediction using parental and breeding populations of Japanese pear (Pyrus pyrifolia Nakai)
Cited by: 44
Author(s): Mai F. Minamikawa, Norio Takada, Shingo Terakami, Toshihiro Saito, Akio Onogi, Hiromi Kajiya‐Kanegae, Takeshi Hayashi, Takatsugu Yamamoto, Hiroyoshi Iwata
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-29664-4

Structural basis for selective inhibition of immunoglobulin E-receptor interactions by an anti-IgE antibody
Cited by: 20
Author(s): Jiun-Bo Chen, Faruk Ramadani, M.O.Y. Pang, Rebecca L. Beavil, Mary D. Holdom, A.N. Mitropoulou, Andrew J. Beavil, Hannah J. Gould, Tse Wen Chang, Brian J. Sutton, James M. McDonnell, Anna M. Davies
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-29058-6

Structural determinants of specificity and regulation of activity in the allosteric loop network of human KLK8/neuropsin
Cited by: 7
Author(s): Mekdes Debela, Viktor Magdolen, Wolfgang Skala, Brigitta Elsässer, Eric L. Schneider, Charles S. Craik, Martin L. Biniossek, Oliver Schilling, Wolfram Bode, Hans Brandstetter, Peter Goettig
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-26601-3

Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor
Cited by: 36
Author(s): Mathieu Schwartz, Thomas Perrot, Emmanuel Aubert, Stéphane Dumarçay, F. Favier, Philippe Gérardin, Mélanie Morel‐Rouhier, Guillermo Mulliert, Fanny Saiag, Claude Didierjean, Éric Gelhaye
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.ppat.1005265

The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases
Cited by: 25
Author(s): D.S. Ferrero, M. Buxaderas, José F. Rodrı́guez, N. Verdaguer
Software Mentions: 3
Published: almost 11 years ago

10.1126/sciadv.aav8421

HspB1 phosphorylation regulates its intramolecular dynamics and mechanosensitive molecular chaperone interaction with filamin C
Cited by: 44
Author(s): M Collier, T. Reid Alderson, Carin Pamela de Villiers, D Nicholls, Heidi Y. Gastall, Timothy M. Allison, Matteo T. Degiacomi, Jiang He, Georg Mlynek, Dieter O. Fürst, Peter F.M. van der Ven, Kristina Djinović-Carugo, Andrew J. Baldwin, Hugh Watkins, Katja Gehmlich, Justin L. P. Benesch
Software Mentions: 3
Published: over 7 years ago

10.1126/sciadv.abh0250

X-ray free-electron laser studies reveal correlated motion during isopenicillin N synthase catalysis
Cited by: 19
Author(s): Patrick Rabe, Jos J. A. G. Kamps, Kyle D. Sutherlin, J. Linyard, Pierre Aller, Cindy C. Pham, Hiroki Makita, I.J. Clifton, M.A. McDonough, T.M. Leissing, Denis Shutin, Pauline A. Lang, A. Butryn, Jürgen Brem, Sheraz Gul, Franklin D. Fuller, In-Sik Kim, Mun Hon Cheah, Thomas Fransson, Asmit Bhowmick, I.D. Young, Lee J. O’Riordan, Aaron S. Brewster, Ilaria Pettinati, Margaret Doyle, Yasumasa Joti, Shigeki Owada, Kensuke Tono, A. Batyuk, Mark S. Hunter, Roberto Alonso-Mori, Uwe Bergmann, R.L. Owen, Nicholas K. Sauter, Timothy D. W. Claridge, Carol V. Robinson, Vittal K. Yachandra, Junko Yano, Jan Kern, Allen M. Orville, Christopher J. Schofield
Software Mentions: 3
Published: about 5 years ago

10.1002/pro.3804

Structural and biochemical analysis of the metallo‐β‐lactamase L1 from emerging pathogen Stenotrophomonas maltophilia revealed the subtle but distinct di‐metal scaffold for catalytic activity
Cited by: 19
Author(s): Young Chang Kim, N. Maltseva, Mateusz Wilamowski, C. Tesar, M. Endres, A. Joachimiak
Software Mentions: 3
Published: over 6 years ago

10.1073/pnas.1911776116

Defining the remarkable structural malleability of a bacterial surface protein Rib domain implicated in infection
Cited by: 14
Author(s): Fiona Whelan, Aleix Lafita, Samuel C. Griffiths, R.E.M. Cooper, J.L. Whittingham, J.P. Turkenburg, Iain W. Manfield, Alexander N. St John, Emanuele Paci, Alex Bateman, Jennifer R. Potts
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.ppat.1009775

Structural insights into Cullin4-RING ubiquitin ligase remodelling by Vpr from simian immunodeficiency viruses
Cited by: 10
Author(s): Sofia Banchenko, Ferdinand Krupp, Christine Gotthold, Jörg Bürger, Andrea Graziadei, Francis J. O’Reilly, Ludwig Sinn, Olga Ruda, Juri Rappsilber, C.M.T. Spahn, Thorsten Mielke, Ian A. Taylor, David Schwefel
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1008394

Structural and functional insights into a novel two-component endolysin encoded by a single gene in Enterococcus faecalis phage
Cited by: 21
Author(s): Biao Zhou, Xiangkai Zhen, Huan Zhou, Feiyang Zhao, Chao Fan, Vanja Perčulija, Yigang Tong, Zhiqiang Mi, Songying Ouyang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.ppat.1009016

Structural insights into loss of function of a pore forming toxin and its role in pneumococcal adaptation to an intracellular lifestyle
Cited by: 10
Author(s): Dilip Badgujar, Anjali Anil, Angharad E Green, Manalee Vishnu Surve, Shilpa Madhavan, Alison J. Beckett, Ian A. Prior, Barsa Kanchan Jyotshna Godsora, Sanket B. Patil, Prachi More, Shruti Guha Sarkar, Andrea M. Mitchell, Rinti Banerjee, Prashant S. Phale, Timothy J. Mitchell, Daniel R. Neill, Prasenjit Bhaumik, Anirban Banerjee
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.ppat.1008848

Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis
Cited by: 1
Author(s): Libang He, Hao Wang, Yang Liu, Mei Kang, Tao Li, Changcheng Li, Aiping Tong, Yuanfeng Zhu, Yingjie Song, Stephen J. Savarino, Michael G. Prouty, Di Xia, Rui Bao
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.59225

Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers
Cited by: 33
Author(s): William Wan, Mairi Clarke, Michael Norris, Larissa Kolesnikova, Alexander Koehler, Zachary A. Bornholdt, Stephan Becker, Erica Ollmann Saphire, John Briggs
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.ppat.1008736

Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step
Cited by: 14
Author(s): Xiaohua Ye, Hang Su, Daniel Wrapp, Daniel C. Freed, Fengsheng Li, Zihao Yuan, Aimin Tang, Leike Li, Zhiqiang Ku, Wei Xiong, Dabbu Kumar Jaijyan, Hua Zhu, Dai Wang, Jason S. McLellan, Ningyan Zhang, Tong-Ming Fu, Zhiqiang An
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.ppat.1008484

A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase
Cited by: 24
Author(s): Jiqin Wu, Han-Qing Ye, Qiuyan Zhang, Guangquan Lu, Bo Zhang, Peng Gong
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1005248

An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum
Cited by: 31
Author(s): Adela S. Oliva Chávez, J.W. Fairman, Roderick F. Felsheim, Curtis M. Nelson, Michael J. Herron, Lee Ann Higgins, Nicole Y. Burkhardt, Jonathan D. Oliver, Todd W. Markowski, Timothy J. Kurtti, Thomas E. Edwards, Ulrike G. Munderloh
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1005351

Mycobacterial Metabolic Syndrome: LprG and Rv1410 Regulate Triacylglyceride Levels, Growth Rate and Virulence in Mycobacterium tuberculosis
Cited by: 76
Author(s): Amanda J. Martinot, Mary F. Farrow, Lu Bai, Emilie Layre, Tan-Yun Cheng, Jennifer Tsai, Jahangir Iqbal, John W. Annand, Zuri A. Sullivan, M. Mahmood Hussain, James C. Sacchettini, D. Branch Moody, Jessica C. Seeliger, Eric J. Rubín
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1006098

Receptor Activation of HIV-1 Env Leads to Asymmetric Exposure of the gp41 Trimer
Cited by: 31
Author(s): Mukta D. Khasnis, Konstantine Halkidis, Anshul Bhardwaj, Michael J. Root
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1006231

Structure of a pentameric virion-associated fiber with a potential role in Orsay virus entry to host cells
Cited by: 10
Author(s): Yingying Fan, Yusong R. Guo, Yuan Wang, Ying Zhou, Matthew V. Holt, Tao Wang, Borries Demeler, Nicolas L. Young, Weiwei Zhong, Yizhi Jane Tao
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1006400

Structural insights into reptarenavirus cap-snatching machinery
Cited by: 27
Author(s): Maria Rosenthal, Nadja Gogrefe, Dominik Vogel, Juan Reguera, Bianka Rauschenberger, Stephen Cusack, Stephan Günther, Sophia Reindl
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1006714

A mobile loop near the active site acts as a switch between the dual activities of a viral protease/deubiquitinase
Cited by: 15
Author(s): Isabelle Jupin, Maya Ayach, Lucile Jomat, Sonia Fieulaine, Stéphane Bressanelli
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.ppat.1006935

Structural basis for recognition of the central conserved region of RSV G by neutralizing human antibodies
Cited by: 45
Author(s): Harrison G. Jones, Tina Ritschel, Gabriel Pascual, Just P. J. Brakenhoff, Elissa Keogh, Polina Furmanova-Hollenstein, Ellen Lanckacker, Jehangir S. Wadia, M.S.A. Gilman, R. Anthony Williamson, Dirk Roymans, Angélique B. van ’t Wout, Johannes P. M. Langedijk, Jason S. McLellan
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1007476

Structural basis of Toxoplasma gondii perforin-like protein 1 membrane interaction and activity during egress
Cited by: 10
Author(s): Alfredo J. Guerra, Ou Zhang, Constance M. Bahr, My Hang Huynh, James Delproposto, William Clay Brown, Z. Wawrzak, Nicole M. Koropatkin, Vern B. Carruthers
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1007944

Alternative conformations of a major antigenic site on RSV F
Cited by: 25
Author(s): Harrison G. Jones, Michael B. Battles, Chun-Chi Lin, Siro Bianchi, Davide Corti, Jason S. McLellan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1008323

Structural basis of Fusarium myosin I inhibition by phenamacril
Cited by: 17
Author(s): Yuxin Zhou, Xuemei Zhou, Yuanping Gong, Yuanye Zhu, Xiaoman Cao, J.S. Brunzelle, H. Eric Xu, Mingguo Zhou, Karsten Melcher, Feng Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008465

Structure of the protective nematode protease complex H-gal-GP and its conservation across roundworm parasites
Cited by: 13
Author(s): Charlotte A. Scarff, Rebecca Thompson, G. F. J. Newlands, A.H. Jamson, Christopher K. Kennaway, V.J. da Silva, Élida Mara Leite Rabelo, Chun Song, John Trinick, W.D. Smith, Stephen P. Muench
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1008619

Dynamic rotation of the protruding domain enhances the infectivity of norovirus
Cited by: 31
Author(s): Chihong Song, Reiko Takai‐Todaka, Motohiro Miki, Kei Haga, Akira Fujimoto, Ryoka Ishiyama, Kazuki Oikawa, Masahiro Yokoyama, Naoyuki Miyazaki, Katsunori Iwasaki, Kosuke Murakami, Kazuhiko Katayama, Kazuyoshi Murata
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1008530

Cryo-EM structure of the fully-loaded asymmetric anthrax lethal toxin in its heptameric pre-pore state
Cited by: 16
Author(s): Claudia Antoni, Dennis Quentin, Alexander E. Lang, Klaus Aktories, Christos Gatsogiannis, Stefan Raunser
Software Mentions: 2
Published: about 6 years ago

10.1073/pnas.1811580115

Structure and architecture of immature and mature murine leukemia virus capsids
Cited by: 87
Author(s): Kun Qu, Bärbel Glass, Michal Doležal, F.K.M. Schur, Brice Murciano, Alan Rein, Michaela Rumlová, Tomáš Ruml, Hans‐Georg Kräusslich, John Briggs
Software Mentions: 2
Published: almost 8 years ago

10.1073/pnas.1901318116

Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing
Cited by: 53
Author(s): Guido A. Stoll, Shun-ichiro Oda, Zheng-Shan Chong, Myeong-Hee Yu, Stephen H. McLaughlin, Yorgo Modis
Software Mentions: 2
Published: about 7 years ago

10.1073/pnas.1921245117

Ancient MAPK ERK7 is regulated by an unusual inhibitory scaffold required for Toxoplasma apical complex biogenesis
Cited by: 37
Author(s): Peter Back, William O’Shaughnessy, Andy S Moon, Pravin S Dewangan, Xiaoyu Hu, Jihui Sha, James A. Wohlschlegel, Peter J. Bradley, Michael L. Reese
Software Mentions: 2
Published: over 6 years ago

10.1073/pnas.2006231117

Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6
Cited by: 35
Author(s): Ziming Yuan, Sarah Schneider, Thomas Dodd, Alberto Riera, Lin Bai, Yan Cheng, Marta Barbon, Indiana Magdalou, Ivaylo Ivanov, Bruce Stillman, Li H, Christian Speck
Software Mentions: 2
Published: about 6 years ago

10.1073/pnas.2014896117

The SERCA residue Glu340 mediates interdomain communication that guides Ca 2+ transport
Cited by: 11
Author(s): Maxwell M. G. Geurts, Johannes Clausen, Bertrand Arnou, Cédric Montigny, Guillaume Lenoir, Robin A. Corey, Christine Jaxel, Jesper Møller, Poul Nissen, Jens Peter Andersen, Marc le Maire, Maike Bublitz
Software Mentions: 2
Published: almost 6 years ago

10.1073/pnas.2020486118

Early-stage dynamics of chloride ion–pumping rhodopsin revealed by a femtosecond X-ray laser
Cited by: 35
Author(s): Ji Hye Yun, Xuanxuan Li, Jianing Yue, Jae Hyun Park, Zeyu Jin, Chufeng Li, Hao Hu, Yingchen Shi, Suraj Pandey, Sergio Carbajo, Sébastien Boutet, Mark S. Hunter, Mao Liang, Raymond G. Sierra, Thomas J Lane, Liang Zhou, Uwe Weierstall, Nadia A. Zatsepin, Mio Ohki, J.R.H. Tame, Sam Yong Park, John C. H. Spence, Wenkai Zhang, Marius Schmidt, Weontae Lee, Haiguang Liu
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.2101349118

Periscope Proteins are variable-length regulators of bacterial cell surface interactions
Cited by: 11
Author(s): Fiona Whelan, Aleix Lafita, James Gilburt, Clément Dégut, Samuel C. Griffiths, Huw T. Jenkins, Alexander N. St John, Emanuele Paci, James Moir, Michael J. Plevin, Christoph G. Baumann, Alex Bateman, Jennifer R. Potts
Software Mentions: 2
Published: over 5 years ago

10.1073/pnas.2101496118

Structure of autoinhibited Akt1 reveals mechanism of PIP3-mediated activation
Cited by: 29
Author(s): Linda Truebestein, Harald Hornegger, Dorothea Anrather, Markus Hartl, Kaelin D Fleming, Jordan T B Stariha, Els Pardon, Jan Steyaert, John E. Burke, Thomas A. Leonard
Software Mentions: 2
Published: about 5 years ago

10.1073/pnas.2111172118

DNA-encoded chemistry technology yields expedient access to SARS-CoV-2 M pro inhibitors
Cited by: 31
Author(s): Srinivas Chamakuri, Shuo Lu, Melek N. Ucisik, Kurt M. Bohren, Ying-Chu Chen, Huang-Chi Du, John C. Faver, Ravikumar Jimmidi, Li Feng, Jianyuan Li, Pranavanand Nyshadham, Stephen Palmer, Jeroen Pollet, Xuan Qin, Shannon E. Ronca, Banumathi Sankaran, Kiran Sharma, Zhi Tan, Leroy Versteeg, Zhifeng Yu, Martin M. Matzuk, Timothy Palzkill, Damian W. Young
Software Mentions: 2
Published: about 5 years ago

10.1007/s13238-014-0087-3

Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71
Cited by: 83
Author(s): Minghao Dang, Xiangxi Wang, Quan Wang, Yaxin Wang, Lin Jiao, Yuna Sun, Xuemei Li, Liguo Zhang, Zhiyong Lou, Junzhi Wang, Zihe Rao
Software Mentions: 2
Published: about 12 years ago

10.1007/s13238-014-0038-z

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII
Cited by: 4
Author(s): Wei Zhuo, Xuhui Lai, Liqing Zhang, Siu-Hong Chan, Fengjuan Li, Zhenyu Zhu, Maojun Yang, Dapeng Sun
Software Mentions: 2
Published: over 12 years ago

10.1007/s13238-015-0163-3

Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 Å resolution
Cited by: 61
Author(s): Shishang Dong, Peng Yang, Guo‐Bang Li, Baocheng Liu, Wenming Wang, Xiang Liu, Xia Bo-ran, Cheng Yang, Zhiyong Lou, Yu Guo, Zihe Rao
Software Mentions: 2
Published: over 11 years ago

10.1007/s13238-015-0205-x

Crystal structures of Bbp from Staphylococcus aureus reveal the ligand binding mechanism with Fibrinogen α
Cited by: 16
Author(s): Xinyue Zhang, Meng Wu, Wei Zhuo, Junping Gu, Sensen Zhang, Jingpeng Ge, Maojun Yang
Software Mentions: 2
Published: almost 11 years ago

10.1007/s13238-015-0220-y

TIM-1 acts a dual-attachment receptor for Ebolavirus by interacting directly with viral GP and the PS on the viral envelope
Cited by: 40
Author(s): Shuai Yuan, Lei Cao, Hui Ling, Minghao Dang, Yao Sun, Xuyuan Zhang, Yutao Chen, Liguo Zhang, Dan Su, Xiangxi Wang, Zihe Rao
Software Mentions: 2
Published: almost 11 years ago

10.1007/s13238-016-0264-7

Structural insights into the regulatory mechanism of the Pseudomonas aeruginosa YfiBNR system
Cited by: 14
Author(s): Min Xu, Xuan Yang, Xiu‐An Yang, Lei Zhou, Liu Tie-zheng, Zusen Fan, Tao Jiang
Software Mentions: 2
Published: over 10 years ago

10.1007/s13238-016-0328-8

Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy
Cited by: 92
Author(s): Mengqi Lv, Chongyuan Wang, Fudong Li, Junhui Peng, Bin Wen, Qingguo Gong, Yunyu Shi, Yajun Tang
Software Mentions: 2
Published: almost 10 years ago

10.1007/s13238-017-0405-7

The binding of a monoclonal antibody to the apical region of SCARB2 blocks EV71 infection
Cited by: 17
Author(s): Xuyuan Zhang, Yang Pan, Nan Wang, Jialong Zhang, Jingyun Li, Hao Guo, Xiangyun Yin, Zihe Rao, Xiangxi Wang, Liguo Zhang
Software Mentions: 2
Published: over 9 years ago

10.1007/s13238-017-0426-2

The crystal structure of Ac-AChBP in complex with α-conotoxin LvIA reveals the mechanism of its selectivity towards different nAChR subtypes
Cited by: 20
Author(s): Manyu Xu, Xiaopeng Zhu, Jinfang Yu, Jinpeng Yu, Sulan Luo, Xinquan Wang
Software Mentions: 2
Published: about 9 years ago

10.1007/s13238-018-0526-7

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate
Cited by: 59
Author(s): Danni Zhou, Xing Zhu, Sanduo Zheng, Dan Tan, Meng‐Qiu Dong, Keqiong Ye
Software Mentions: 2
Published: over 8 years ago

10.1002/pro.3120

Structural and functional insights into thermally stable cytochrome c′ from a thermophile
Cited by: 14
Author(s): Sotaro Fujii, Hiroya Oki, Kazuki Kawahara, Daisuke Yamane, Masahito Yamanaka, Takahiro Maruno, Yuji Kobayashi, Misa Masanari, Satoshi Wakai, Hirofumi Nishihara, Tadayasu Ohkubo, Yoshihiro Sambongi
Software Mentions: 2
Published: over 9 years ago

10.1002/pro.3879

Structural and chemical trapping of flavin‐oxide intermediates reveals substrate‐directed reaction multiplicity
Cited by: 3
Author(s): Kuan‐Hung Lin, S.Y. Lyu, Hsien‐Wei Yeh, Yi‐Shan Li, Ning‐Shian Hsu, Chun‐Man Huang, Yung‐Lin Wang, Han C. Shih, Zhe‐Chong Wang, Changshan Wu, Tsung‐Lin Li
Software Mentions: 2
Published: over 6 years ago

10.1017/S0033583515000207

Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS
Cited by: 38
Author(s): M. Teplova, Thalia A. Farazi, Thomas Tuschl, Dinshaw J. Patel
Software Mentions: 2
Published: almost 11 years ago

10.1039/d0cb00142b

Bypassing the requirement for aminoacyl-tRNA by a cyclodipeptide synthase enzyme
Cited by: 5
Author(s): Christopher John Harding, Emmajay Sutherland, Jane G. Hanna, Douglas R. Houston, Clarissa Melo Czekster
Software Mentions: 2
Published: over 5 years ago

10.21203/rs.3.rs-40159/v1

Structure of human steroid 5&#x03B1;-reductase 2 with anti-androgen drug finasteride
Cited by: 4
Author(s): Qiuping Xiao, Lei Wang, Shreyas Supekar, Tao Shen, Heng Liu, Fei Ye, Junzhou Huang, Hao Fan, Zhiyi Wei, Cheng Zhang
Software Mentions: 2
Published: about 6 years ago

10.21203/rs.3.rs-625642/v1

Structures of synthetic nanobody–SARS-CoV-2–RBD complexes reveal distinct sites of interaction and recognition of variants
Cited by: 0
Author(s): David H. Margulies, Javeed Ahmad, Jiansheng Jiang, Lisa F. Boyd, Allison Zeher, Rick Huang, Di Xia, Kannan Natarajan
Software Mentions: 2
Published: about 5 years ago

10.1186/1742-4690-10-64

Biophysical characterization and crystal structure of the Feline Immunodeficiency Virus p15 matrix protein
Cited by: 12
Author(s): J. Serrière, Xavier Robert, M. Perez, Patrice Gouet, Christophe Guillon
Software Mentions: 2
Published: about 13 years ago

10.1126/sciadv.aav2623

A functional proteomics platform to reveal the sequence determinants of lysine methyltransferase substrate selectivity
Cited by: 25
Author(s): Evan M. Cornett, Bradley M. Dickson, Krzysztof Krajewski, Nicholas Spellmon, Andrew Umstead, Robert M. Vaughan, Kevin M. Shaw, Philip Versluis, Martis W. Cowles, J.S. Brunzelle, Zhe Yang, Irving E. Vega, Zu Wen Sun, Scott B. Rothbart
Software Mentions: 2
Published: almost 8 years ago

10.1126/sciadv.aba4996

Cryo-EM structure of human Cx31.3/GJC3 connexin hemichannel
Cited by: 43
Author(s): Hyuk Joon Lee, Hyomin Jeong, Jaekyung Hyun, Bumhan Ryu, Kunwoong Park, Hyun‐Ho Lim, Jejoong Yoo, Jae Sung Woo
Software Mentions: 2
Published: about 6 years ago

10.1126/sciadv.abc1370

The structural basis for Z α 1 -antitrypsin polymerization in the liver
Cited by: 23
Author(s): Sarah V. Faull, Emma Elliston, Bibek Gooptu, Alistair M. Jagger, Ibrahim Aldobiyan, Adam Redzej, Magd Badaoui, Nina Heyer-Chauhan, S. Tamir Rashid, Gary Reynolds, David Adams, Elena Miranda, Elena V. Orlova, James A. Irving, David A. Lomas
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep07115

Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3
Cited by: 62
Author(s): Yasuhiro Arimura, Kazuyoshi Shirayama, Naoki Horikoshi, Ryosuke Fujita, Hiroyuki Taguchi, Wataru Kagawa, Tatsuo Fukagawa, Geneviève Almouzni, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 12 years ago

10.1038/srep08789

Substitution of tryptophan 89 with tyrosine switches the DNA binding mode of PC4
Cited by: 17
Author(s): Jinguang Huang, Yanxiang Zhao, Huaian Liu, Dan Huang, Xiankun Cheng, Wensheng Zhao, Ian A. Taylor, Junfeng Liu, You-Liang Peng
Software Mentions: 2
Published: over 11 years ago

10.1038/srep09064

Structure, Function and Inhibition of the Phosphoethanolamine Methyltransferases of the Human Malaria Parasites Plasmodium vivax and Plasmodium knowlesi
Cited by: 22
Author(s): Aayushi Garg, T. Lukk, Vidya P. Kumar, Jae Yeon Choi, Yoann Augagneur, Dennis R. Voelker, Satish K. Nair, Choukri Ben Mamoun
Software Mentions: 2
Published: over 11 years ago

10.1038/srep11677

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.
Cited by: 135
Author(s): Marcus J. Edwards, Gaye F. White, Michael Norman, Alice Tome-Fernandez, Emma V. Ainsworth, Liang Shi, Jim K. Fredrickson, John M. Zachara, Julea N. Butt, David J. Richardson, Thomas A. Clarke
Software Mentions: 2
Published: about 11 years ago

10.1038/srep11666

Structural Features of a Bacteroidetes-Affiliated Cellulase Linked with a Polysaccharide Utilization Locus
Cited by: 21
Author(s): Adrian E. Naas, Alasdair Mackenzie, Bjoern Dalhus, Vincent G. H. Eijsink, Phillip B. Pope
Software Mentions: 2
Published: about 11 years ago

10.1038/srep11863

Structural insights into the unique inhibitory mechanism of the silkworm protease inhibitor serpin18
Cited by: 22
Author(s): Pengchao Guo, Zhaoming Dong, Yan Zhang, Huawei He, Xiang Tan, Weiwei Zhang, Qingyou Xia
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-018-25361-4

NADH/NADPH bi-cofactor-utilizing and thermoactive ketol-acid reductoisomerase from Sulfolobus acidocaldarius
Cited by: 12
Author(s): Chin‐Yu Chen, Tzu‐Ping Ko, Kuan-Fu Lin, Bo‐Lin Lin, Chun‐Hsiang Huang, Cheng‐Hung Chiang, Jia‐Cherng Horng
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-27118-5

Structural insights into the stimulation of S. pombe Dnmt2 catalytic efficiency by the tRNA nucleoside queuosine
Cited by: 21
Author(s): Sven Johannsson, Piotr Neumann, Alexander Wulf, Luisa M. Welp, Hans‐Dieter Gerber, Matthias Krüll, Ulf Diederichsen, Henning Urlaub, Ralf Ficner
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-27175-w

An Evolutionarily Conserved Structural Platform for PRC2 Inhibition by a Class of Ezh2 Inhibitors
Cited by: 26
Author(s): Matthew Bratkowski, Xin Yang, Xin Liu
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-28584-7

Structural and functional characterization of suramin-bound MjTX-I from Bothrops moojeni suggests a particular myotoxic mechanism
Cited by: 24
Author(s): Daniela P. Marchi-Salvador, Thiago R. Dreyer, Antoniel Augusto Severo Gomes, Walter Luís Garrido Cavalcante, Jorge M. Santos, César A. Gandin, Mário de Oliveira Neto, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-29498-0

Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica
Cited by: 8
Author(s): Hajime Unno, Azusa Nakamura, Shigeo Mori, Shuichiro Goda, Kensei Yamaguchi, Keiko Hiemori, Hiroaki Tateno, Tomomitsu Hatakeyama
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-31808-5

Copper mediated amyloid-β binding to Transthyretin
Cited by: 24
Author(s): Lidia Ciccone, Carole Fruchart-Gaillard, Gilles Mourier, Martin Savko, Susanna Nencetti, Elisabetta Orlandini, Denis Servent, E.A. Stura, William Shepard
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-33366-2

Increasing the distance between two monomers of topoisomerase IIβ under the action of antitumor agent 4β-sulfur-(benzimidazole) 4′-demethylepipodophyllotoxin
Cited by: 2
Author(s): Lin-Yang Sun, Liwen Zhu, Ya‐Jie Tang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-34984-6

Tracing whale myoglobin evolution by resurrecting ancient proteins
Cited by: 21
Author(s): Yasuhiro Isogai, Hiroshi Imamura, S. Nakae, Tetsuya Sumi, Ken Takahashi, Taro Nakagawa, Antonio Tsuneshige, Tomoyuki Shirai
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-36839-6

Search for efficient inhibitors of myotoxic activity induced by ophidian phospholipase A2-like proteins using functional, structural and bioinformatics approaches
Cited by: 23
Author(s): Daniela P. Marchi-Salvador, Filomena Cardoso, Antoniel Augusto Severo Gomes, Walter Luís Garrido Cavalcante, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-37806-x

Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis
Cited by: 8
Author(s): Noriyuki Ogawa, Takehide Kimura, Fumi Umehara, Yuki Katayama, Go Nagai, Keiko Suzuki, Kazuo Aisaka, Yukie Maruyama, Takafumi Itoh, Wataru Hashimoto, Kousaku Murata, Michio Ichimura
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-39020-9

Polyacrylamide injection matrix for serial femtosecond crystallography
Cited by: 36
Author(s): Jaehyun Park, Sehan Park, Jang Woo Kim, Gisu Park, Yunje Cho, Ki Hyun Nam
Software Mentions: 2
Published: over 7 years ago

Projects: cran: PHENIX

Science Score: 75/100

Penalties:

Papers Mentioning PHENIX 2,287