cran: PHENIX | Projects | Ecosyste.ms: Papers

10.7554/eLife.59225

Ebola and Marburg virus matrix layers are locally ordered assemblies of VP40 dimers
Cited by: 33
Author(s): William Wan, Mairi Clarke, Michael Norris, Larissa Kolesnikova, Alexander Koehler, Zachary A. Bornholdt, Stephan Becker, Erica Ollmann Saphire, John Briggs
Software Mentions: 3
Published: over 5 years ago

10.1074/jbc.RA118.006045

Structural insights into non-covalent ubiquitin activation of the cIAP1-UbcH5B∼ubiquitin complex
Cited by: 12
Author(s): Amrita Patel, Gary Sibbet, Danny T. Huang
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2019.02084

YtrASa, a GntR-Family Transcription Factor, Represses Two Genetic Loci Encoding Membrane Proteins in Sulfolobus acidocaldarius
Cited by: 9
Author(s): Liesbeth Lemmens, Laurentijn Tilleman, Ezra De Koning, K. Valegård, Ann-Christin Lindås, Filip Van Nieuwerburgh, Dominique Maes, Eveline Peeters
Software Mentions: 3
Published: over 6 years ago

10.1016/j.jsb.2020.107545

Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
Cited by: 72
Author(s): Kailash Ramlaul, Colin M. Palmer, Takanori Nakane, C.H.S. Aylett
Software Mentions: 3
Published: over 5 years ago

10.1038/srep33553

Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Cited by: 7
Author(s): Caiyan Wang, Qian Jia, Ran Chen, Yuming Wei, Juntao Li, Jie Ma, Wei Xie
Software Mentions: 3
Published: over 9 years ago

10.1107/S205225251900246X

Subatomic resolution X-ray structures of green fluorescent protein
Cited by: 24
Author(s): Kiyotsugu Takaba, Yang Tai, Haruhiko Eki, Hoang Anh Dao, Yuya Hanazono, Kazuya Hasegawa, Kunio Miki, Kazuki Takeda
Software Mentions: 3
Published: almost 7 years ago

10.1074/jbc.M114.627059

Neuronal Calcium Sensor-1 Binds the D2 Dopamine Receptor and G-protein-coupled Receptor Kinase 1 (GRK1) Peptides Using Different Modes of Interactions
Cited by: 25
Author(s): S. Pandalaneni, V. Karuppiah, Muhammad Saleem, Lee P. Haynes, Robert D. Burgoyne, Olga Mayans, Jeremy P. Derrick, Lu‐Yun Lian
Software Mentions: 3
Published: over 10 years ago

10.3389/fcimb.2020.00082

Francisella novicida Two-Component System Response Regulator BfpR Modulates iglC Gene Expression, Antimicrobial Peptide Resistance, and Biofilm Production
Cited by: 6
Author(s): Scott N. Dean, Morgan E. Milton, John Cavanagh, Monique L. van Hoek
Software Mentions: 3
Published: almost 6 years ago

10.1074/jbc.M114.621789

Complex Structure and Biochemical Characterization of the Staphylococcus aureus Cyclic Diadenylate Monophosphate (c-di-AMP)-binding Protein PstA, the Founding Member of a New Signal Transduction Protein Family
Cited by: 47
Author(s): Ivan Campeotto, Yong Everett Zhang, Miroslav Mladenov, Paul S. Freemont, Angelika Gründling
Software Mentions: 3
Published: about 11 years ago

10.3389/fmolb.2021.652530

Cryo-EM Map–Based Model Validation Using the False Discovery Rate Approach
Cited by: 4
Author(s): Mateusz Olek, Agnel Praveen Joseph
Software Mentions: 3
Published: over 4 years ago

10.1128/JB.00115-20

A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes
Cited by: 4
Author(s): S. Hansen, Michael Hall, C. Grundström, Kristoffer Brännström, A. Elisabeth Sauer‐Eriksson, Jörgen Johansson
Software Mentions: 3
Published: over 5 years ago

10.1107/S1600576720002423

Application of a high-throughput microcrystal delivery system to serial femtosecond crystallography
Cited by: 21
Author(s): Donghyeon Lee, Sehan Park, Keondo Lee, Jang Woo Kim, Gisu Park, Ki Hyun Nam, Sangwon Baek, Wan Kyun Chung, Jong‐Lam Lee, Yunje Cho, Jaehyun Park
Software Mentions: 3
Published: almost 6 years ago

10.1007/s10969-014-9188-8

Crystal structures of the S6K1 kinase domain in complexes with inhibitors
Cited by: 12
Author(s): Hideaki Niwa, Junko Mikuni, Shunta Sasaki, Yuri Tomabechi, Keiko Honda, Mariko Ikeda, Noboru Ohsawa, Motoaki Wakiyama, N. Handa, Mikako Shirouzu, Teruki Honma, Akiko Tanaka, Shigeyuki Yokoyama
Software Mentions: 3
Published: over 11 years ago

10.1016/j.yjsbx.2020.100031

In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors
Cited by: 1
Author(s): Jingxu Guo, A. Douangamath, Weixiao Song, Alun R. Coker, A. W. Edith Chan, Steve Wood, J.B. Cooper, E. Resnick, Nir London, F. von Delft
Software Mentions: 3
Published: about 6 years ago

10.1107/S2052252519007668

Structures of three ependymin-related proteins suggest their function as a hydrophobic molecule binder
Cited by: 10
Author(s): Jeong Kuk Park, Keon Young Kim, Yeo Won Sim, Young Dong Kim, Jin Kyun Kim, Cheol Lee, Jeongran Han, Chae Un Kim, J. Eugene Lee, SangYoun Park
Software Mentions: 3
Published: over 6 years ago

10.1128/mBio.02858-18

Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket
Cited by: 13
Author(s): Pierrick Craveur, A.T. Gres, Karen A. Kirby, Dandan Liu, John A. Hammond, Yisong Deng, Stefano Forli, David S. Goodsell, James R. Williamson, Stefan G. Sarafianos, Arthur J. Olson
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2021.668897

The Plastid-Encoded RNA Polymerase-Associated Protein PAP9 Is a Superoxide Dismutase With Unusual Structural Features
Cited by: 8
Author(s): Adrien Favier, Pierre Gans, Elisabetta Erba, Luca Signor, Soumiya Sankari Muthukumar, Thomas Pfannschmidt, Robert Blanvillain, David Cobessi
Software Mentions: 3
Published: over 4 years ago

10.1111/febs.15514

Structure‐based design of peptides that trigger Streptococcus pneumoniae cell death
Cited by: 11
Author(s): Sung-Min Kang, Chun Jin, Do-Hee Kim, Sung Jean Park, Sang-Woo Han, Bong-Jin Lee
Software Mentions: 3
Published: over 5 years ago

10.1128/mBio.01569-16

The Antiviral Mechanism of an Influenza A Virus Nucleoprotein-Specific Single-Domain Antibody Fragment
Cited by: 24
Author(s): Leo Hanke, Kevin E. Knockenhauer, R. Camille Brewer, Eline van Diest, Florian I. Schmidt, Thomas Schwartz, Hidde L. Ploegh
Software Mentions: 3
Published: about 9 years ago

10.1098/rsob.160292

Structural, mechanistic and functional insight into gliotoxin bis -thiomethylation in Aspergillus fumigatus
Cited by: 32
Author(s): Stephen K. Dolan, Thomas Böck, Vanessa Hering, Rebecca A. Owens, Gary W. Jones, Wulf Blankenfeldt, Seán Doyle
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.str.2021.04.004

Structural characterization of KKT4, an unconventional microtubule-binding kinetochore protein
Cited by: 8
Author(s): Patryk Ludzia, E.D. Lowe, Gabriele Marcianò, Shabaz Mohammed, Christina Redfield, Bungo Akiyoshi
Software Mentions: 3
Published: over 4 years ago

10.1016/j.str.2020.08.004

Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics
Cited by: 14
Author(s): D E. Nicholson, Thomas A. Edwards, Alex J. O’Neill, Neil A. Ranson
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22168631

The Oxoglutarate Binding Site and Regulatory Mechanism Are Conserved in Ammonium Transporter Inhibitors GlnKs from Methanococcales
Cited by: 5
Author(s): Marie-Caroline Müller, T. Wagner
Software Mentions: 3
Published: over 4 years ago

10.1016/j.str.2020.04.010

CCDC61/VFL3 Is a Paralog of SAS6 and Promotes Ciliary Functions
Cited by: 16
Author(s): Takashi Ochi, Valentina Quarantotti, Huawen Lin, Jérôme Jullien, Ivan Rosa e Silva, Francesco Boselli, Deepak D. Barnabas, Christopher M. Johnson, Stephen H. McLaughlin, Stefan Freund, Andrew N. Blackford, Yuu Kimata, Raymond E. Goldstein, Stephen Jackson, Tom L. Blundell, Susan K. Dutcher, Fanni Gergely, M. van Breugel
Software Mentions: 3
Published: over 5 years ago

10.1128/JVI.01664-19

Structure of Merkel Cell Polyomavirus Capsid and Interaction with Its Glycosaminoglycan Attachment Receptor
Cited by: 12
Author(s): Niklas Johannes Bayer, Dovile Januliene, Georg Zocher, Thilo Stehle, Arne Moeller, Bärbel S. Blaum
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22083812

Crystal Structure of the Epo1-Bem3 Complex for Bud Growth
Cited by: 0
Author(s): Jin Wang, Lei Li, Zhenhua Ming, Lijie Wu, Liming Yan
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.febslet.2015.11.030

Crystal structure of the Z-ring associated cell division protein ZapC from Escherichia coli
Cited by: 13
Author(s): Cristina Ortiz, Danguole Kureisaite-Ciziene, Florian Schmitz, Stephen H. McLaughlin, Miguel Vicente, Jan Löwe
Software Mentions: 3
Published: about 10 years ago

10.3390/ijms21207683

Hydroxylation of Antitubercular Drug Candidate, SQ109, by Mycobacterial Cytochrome P450
Cited by: 12
Author(s): Sergey Bukhdruker, Tatsiana Varaksa, Irina Grabovec, Egor Marin, Polina Shabunya, Maria Kadukova, Sergei Grudinin, Anton Kavaleuski, Anastasiia Gusach, Andrei A. Gilep, Valentin Borshchevskiy, Natallia Strushkevich
Software Mentions: 3
Published: about 5 years ago

10.1007/s00792-013-0542-8

The role of disulfide bond in hyperthermophilic endocellulase
Cited by: 13
Author(s): Han-Woo Kim, Kazuhiko Ishikawa
Software Mentions: 3
Published: over 12 years ago

10.7554/eLife.21646

Kinetics of the LOV domain of ZEITLUPE determine its circadian function in Arabidopsis
Cited by: 57
Author(s): Ashutosh Pudasaini, Jae Sung Shim, Young Hun Song, Hua Shi, Takatoshi Kiba, David E. Somers, Takato Imaizumi, Brian D. Zoltowski
Software Mentions: 3
Published: almost 9 years ago

10.3389/fbioe.2020.00707

An (R)-Selective Transaminase From Thermomyces stellatus: Stabilizing the Tetrameric Form
Cited by: 18
Author(s): Christian M. Heckmann, L.J. Gourlay, Beatriz Domı́nguez, Francesca Paradisi
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2017.02034

Molecular Insight into the Acryloyl-CoA Hydration by AcuH for Acrylate Detoxification in Dimethylsulfoniopropionate-Catabolizing Bacteria
Cited by: 10
Author(s): Hai‐Yan Cao, Peng Wang, Fei Xu, Ping‐Yi Li, Bin-Bin Xie, Qi‐Long Qin, Yuzhong Zhang, Chunyang Li, Xiu-Lan Chen
Software Mentions: 3
Published: about 8 years ago

10.1016/j.str.2017.12.005

Atomic Structure of Type VI Contractile Sheath from Pseudomonas aeruginosa
Cited by: 27
Author(s): Osman Salih, Shaoda He, Sara Planamente, Lasse Stach, James T. MacDonald, Eleni Manoli, S.H.W. Scheres, Alain Filloux, Paul S. Freemont
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.str.2017.01.002

Crystal Structure of the Heterotrimeric Integrin-Binding Region of Laminin-111
Cited by: 28
Author(s): David Pulido, Sadaf-Ahmahni Hussain, Erhard Hohenester
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-018-21667-5

Structure based function-annotation of hypothetical protein MGG_01005 from Magnaporthe oryzae reveals it is the dynein light chain orthologue of dynlt1/3
Cited by: 2
Author(s): Guorui Li, Jinguang Huang, Jun Yang, Dan He, Chao Wang, Xiaoxuan Qi, Ian A. Taylor, Junfeng Liu, You-Liang Peng
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-19991-x

Thermal stabilization of the deglycating enzyme Amadoriase I by rational design
Cited by: 18
Author(s): Federica Rigoldi, Stefano Donini, Francesca Giacomina, Federico Sorana, Alberto Redaelli, Tiziano Bandiera, Emilio Parisini, Alfonso Gautieri
Software Mentions: 3
Published: almost 8 years ago

10.1107/S205225251700570X

Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation
Cited by: 123
Author(s): José M. Martín-García, Chelsie E. Conrad, Garrett Nelson, Natasha Stander, Nadia A. Zatsepin, James Zook, Liya Zhu, James H. Geiger, Eugene Chun, David J. Kissick, Mark Hilgart, Craig M. Ogata, Andrii Ishchenko, Nirupa Nagaratnam, Shatabdi Roy-Chowdhury, Jesse Coe, Ganesh Subramanian, Alexander F. Schäffer, Daniel James, Gihan Ketwala, Nagarajan Venugopalan, Shenglan Xu, Stephen Corcoran, D.R. Ferguson, Uwe Weierstall, John C. H. Spence, Vadim Cherezov, Petra Fromme, Robert F. Fischetti, Wei Liu
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-017-10085-8

Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq
Cited by: 14
Author(s): Eike C. Schulz, Markus Seiler, Cecilia Zuliani, Franka Voigt, Vladimir Rybin, Vivian Pogenberg, Norbert Mücke, Matthias Wilmanns, Toby J. Gibson, O. Barábas
Software Mentions: 3
Published: over 8 years ago

10.1038/srep40517

An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase
Cited by: 13
Author(s): Emily Golden, Li‐Juan Yu, Flora Meilleur, Matthew P. Blakeley, Anthony P. Duff, Amir Karton, Alice Vrielink
Software Mentions: 3
Published: almost 9 years ago

10.1038/srep38564

Structure and dynamics of a constitutively active neurotensin receptor
Cited by: 55
Author(s): Brian E. Krumm, Sangbae Lee, Supriyo Bhattacharya, Istvan Botos, Courtney F. White, Haijuan Du, Nagarajan Vaidehi, Reinhard Grisshammer
Software Mentions: 3
Published: about 9 years ago

10.1128/JVI.03065-15

A Dimerization-Dependent Mechanism Drives the Endoribonuclease Function of Porcine Reproductive and Respiratory Syndrome Virus nsp11
Cited by: 26
Author(s): Yuejun Shi, Youwen Li, Yingying Lei, Gang Ye, Zhou Shen, Limeng Sun, Rui Luo, Dan Wang, Zhen F. Fu, Shaobo Xiao, Guiqing Peng
Software Mentions: 2
Published: over 9 years ago

10.1140/epjc/s10052-016-4320-5

Energy versus centrality dependence of the jet quenching parameter $$\hat{q}$$ q ^ at RHIC and LHC: a new puzzle?
Cited by: 56
Author(s): Carlota Andrés, N. Armesto, Matthew Luzum, Carlos A. Salgado, Pía Zurita
Software Mentions: 2
Published: over 9 years ago

10.1140/epjc/s10052-015-3819-5

Heavy-flavour and quarkonium production in the LHC era: from proton–proton to heavy-ion collisions
Cited by: 396
Author(s): A. Andronic, François Arleo, R. Arnaldi, A. Beraudo, E. Bruna, D. Caffarri, Z. Conesa del Valle, J. G. Contreras, T. Dahms, A. Dainese, Magdalena Djordjevic, E. G. Ferreiro, H. Fujii, Pol Bernard Gossiaux, R. Granier de Cassagnac, C. Hadjidakis, M. He, Hendrik van Hees, W. A. Horowitz, R. Kolevatov, B. Z. Kopeliovich, J. P. Lansberg, Maria-Paola Lombardo, C. Lourenço, Gines Martinez-Garcia, L. Massacrier, C. Mironov, A. Mischke, Marlene Nahrgang, M. Nguyen, J. Nystrand, Stéphane Peigné, S. Porteboeuf-Houssais, I. K. Potashnikova, A. Rakotozafindrabe, Ralf Rapp, P. Robbe, M. Rosati, P. Rosnet, Helmut Satz, R. Schicker, I. Schienbein, Iván Schmidt, E. Scomparin, Rajnikant Sharma, J. Stachel, D. Stocco, Michael Strickland, R. Tieulent, B. A. Trzeciak, Jan Uphoff, Ivan Vitev, R. Vogt, K. Watanabe, H. K. Woehri, Pengfei Zhuang
Software Mentions: 2
Published: almost 10 years ago

10.1140/epjc/s10052-015-3422-9

Measurement of pion, kaon and proton production in proton–proton collisions at $$\sqrt{s} = 7$$ s = 7 TeV
Cited by: 129
Author(s): J. Adam, D. Adamová, M. M. Aggarwal, G. Aglieri Rinella, M. Agnello, Neelima Agrawal, Z. Ahammed, I. Ahmed, Sang Un Ahn, I. Aimo, S. Aiola, M. Ajaz, A. Akindinov, Sk Noor Alam, Dmitry Aleksandrov, B. Alessandro, D. Alexandre, R. Alfaro Molina, A. Alici, A. Alkin, J. Alme, T. Alt, S. Altinpinar, I. Altsybeev, C. Alves Garcia Prado, C. Andrei, A. Andronic, V. Anguelov, J. Anielski, T. Antičić, F. Antinori, P. Antonioli, L. Aphecetche, H. Appelshäuser, S. Arcelli, N. Armesto, R. Arnaldi, T. Aronsson, I. C. Arsene, M. Arslandok, A. Augustinus, R. Averbeck, M. D. Azmi, M. Bach, A. Badalà, Y. W. Baek, S. Bagnasco, R. Bailhache, R. Bala, A. Baldisseri, M. Ball, F. Baltasar Dos Santos Pedrosa, R. C. Baral, Anastasia Maria Barbano, R. Barbera, F. Barile, G. G. Barnaföldi, L. S. Barnby, V. Barret, P. Bartalini, J. Bartke, E. Bartsch, M. Basile, N. Bastid, S. Basu, B. Bathen, G. Batigne, A. Batista Camejo, B. Batyunya, P. C. Batzing, I. G. Bearden, H. Beck, C. Bedda, N. K. Behera, I. Belikov, F. Bellini, H. Bello Martínez, R. Bellwied, R. Belmont, E. Belmont‐Moreno, V. Belyaev, G. Bencédi, S. Beolè, I. Berceanu, A. Bercuci, Y. Berdnikov, D. Berényi, R. A. Bertens, D. Berzano, L. Betev, A. Bhasin, I. R. Bhat, A. K. Bhati, B. Bhattacharjee, J. Bhom, L. Bianchi, N. Bianchi, C. Bianchin, J. Bielčík, J. Bielčíková, A. Bilandzic, S. Biswas, S. Bjelogrlic, F. Blanco, D. Blau, C. Blume, F. Bock, A. Bøgdanov, H. Bøggild, L. Boldizsár, M. Bombara, J. Book, H. Borel, A. Borissov, M. Borri, F. Bossú, M. Botje, E. Botta, S. Böttger, P. Braun‐Munzinger, M. Bregant, T. Breitner, T. A. Broker, T. A. Browning, M. Broz, E. Brücken, E. Bruna, G. Bruno, D. Budnikov, H. Buesching, S. Bufalino, P. Bunčić, O. Busch, Z. Buthelezi, J. T. Buxton, D. Caffarri, X. Cai, H. Caines, L. Calero Diaz, A. Caliva, E. Calvo Villar, P. Camerini, F. Carena, W. Carena, J. Castillo Castellanos, A. Castro, E. A. R. Casula, C. Cavicchioli, C. Ceballos Sànchez, J. Cepila, P. Cerello, B. Chang, S. Chapeland, M. Chartier, J. L. Charvet, S. Chattopadhyay, V. Chelnokov, M. Cherney, C. Cheshkov, B. Cheynis, V. Chibante Barroso, D. D. Chinellato, P. Chochula, K. Choi, M. Chojnacki, S. Choudhury, P. Christakoglou, C. H. Christensen, P. Christiansen, T. Chujo, S. U. Chung, C. Cicalò, L. Cifarelli, F. Cindolo, J. Cleymans, F. Colamaria, D. Colella, A. Collu, M. Colocci, G. Conesa Balbastre, Z. Conesa del Valle, M. Connors, J. G. Contreras, Thomas Michael Cormier, Y. Corrales Morales, I. Cortés Maldonado, P. Cortese, M. R. Cosentino, F. Costa, P. Crochet, R. Cruz Albino, E. Cuautle, L. Cunqueiro, T. Dahms, A. Dainese, A. Danu, D. Das, I. Das, S. Das, A. Dash, S. Dash, S. De, A. De, G. de Cataldo, J. de Cuveland, A. De Falco, D. De Gruttola, N. De Marco, S. De Pasquale, A. Deisting, A. Deloff, E. Dénes, G. DʼErasmo, D. Di Bari, A. Di Mauro, P. Di Nezza, M. A. Diaz Corchero, T. Dietel, P. Dillenseger, R. Divià, Oeystein Djuvsland, A. Dobrin, T. Dobrowolski, D. Domenicis Gimenez, B. Dönigus, O. Dordic, A. K. Dubey, A. Dubla, L. Ducroux, P. Dupieux, R. J. Ehlers, D. Elia, H. Engel, B. Erazmus, F. Erhardt, D. Eschweiler, B. Espagnon, M. Estienne, S. Esumi, J. Eum, D. Evans, S. Evdokimov, G. Eyyubova, L. Fabbietti, D. Fabris, J. Faivre, A. Fantoni, M. Fasel, L. Feldkamp, D. Felea, A. Feliciello, Г. Феофилов, J. Ferencei, A. Fernández Téllez, E. G. Ferreiro, A. Ferretti, A. Festanti, J. Figiel, M. A. S. Figueredo, S. Filchagin, D. Finogeev, F. M. Fionda, E. M. Fiore, M. G. Fleck, M. Floris, S. Foertsch, P. Foka, S. Fokin, E. Fragiacomo, A. Francescon, U. Frankenfeld, U. Fuchs, C. Furget, A. Furs, M. Fusco Girard, J. J. Gaardhøje, M. Gagliardi, A. M. Gago, M. Gallio, D. R. Gangadharan, P. Ganoti, C. Gao, C. Garabatos, E. García-Solis, C. Gargiulo, P. Gasik, M. Germain, A. Gheaţă, M. Gheata, P. Ghosh, S. K. Ghosh, P. Gianotti, P. Giubellino, P. Giubilato, E. Gladysz Dziadus, P. Glässel, A. Gómez Ramírez, Pedro González Zamora, S. Gorbunov, L. Görlich, S. Gotovac, V. Grabski, L. K. Graczykowski, A. Grelli, A. Grigoras, C. Grigoras, V. Grigoriev, A. Grigoryan, S. Grigoryan, B. Grinyov, N. Grion, J. F. Grosse-Oetringhaus, J.‐Y. Grossiord, R. Grosso, F. Guber, R. Guernane, B. Guerzoni, K. Gulbrandsen, H. Gulkanyan, T. Gunji, A. Gupta, R. Gupta, R. Haake, Ø. Haaland, C. Hadjidakis, M. Haiduc, H. Hamagaki, G. Hamar, L. D. Hanratty, A. Hansen, J. W. Harris, H. Hartmann, A. Harton, D. Hatzifotiadou, S. Hayashi, S. T. Heckel, M. Heide, H. Helstrup, A. Herghelegiu, G. Herrera Corral, B. A. Hess, K. F. Hetland, T. E. Hilden, H. Hillemanns, B. Hippolyte, P. Hristov, M. Huang, T. J. Humanic, N. Hussain, T. Hussain, D. Hutter, Dae Sung Hwang, R. Ilkaev, I. Ilkiv, M. Inaba, C. Ionita, M. Ippolitov, M. Irfan, M. Ivanov, V. Ivanov, V. Izucheev, P. Jacobs, C. Jahnke, H. J. Jang, M. A. Janik, P. H. S. Y. Jayarathna, C. Jena, S. Jena, R. T. Jimenez Bustamante, P. G. Jones, H. Jung, A. Jusko, P. Kaliňák, A. Kalweit, J. Kamin, J. H. Kang, V. Kaplin, S. Kar, A. Karasu Uysal, O. Karavichev, T. Karavicheva, E. Karpechev, U. Kebschull, R. Keidel, D. L. D. Keijdener, M. Keil, K. H. Khan, M. Mohisin Khan, P. Khan, S. A. Khan, A. Khanzadeev, Y. Kharlov, B. Kileng, B. Kim, D. W. Kim, D. J. Kim, H. Kim, J. S. Kim, M. Kim, S. Kim, T. Kim, S. Kirsch, I. Kisel, S. Kiselev, A. Kisiel, G. Kiss, J. L. Klay, C. Klein, J. Klein, C. Klein-Bösing, Alexander Kluge, M. L. Knichel, A. G. Knospe, T. Kobayashi, C. Kobdaj, M. Kofarago, M. K. Köhler, T. Kollegger, A. Kolojvari, V. Kondratiev, N. Kondratyeva, E. Kondratyuk, A. Konevskikh, C. Kouzinopoulos, O. Kovalenko, В. Коваленко, M. Kowalski, S. Kox, G. Koyithatta Meethaleveedu, J. Král, I. Králik, A. Kravčáková, M. Krelina, M. Kretz, M. Krivda, F. Křížek, E. Kryshen, M. Krzewicki, A. M. Kubera, V. Kučera, Y. Kucheriaev, T. Kugathasan, C. Kuhn, P. G. Kuijer, I. Kulakov, J. Kumar, L. Kumar, P. Kurashvili, A. Kurepin, A. Kuryakin, S. Kushpil, M. J. Kweon, Y. Kwon, S. L. La Pointe, P. La Rocca, C. Lagana Fernandes, I. Lakomov, R. Langoy, C. Lara, A. Lardeux, A. Lattuca, E. Laudi, R. Lea, L. Leardini, G. R. Lee, S. Lee, I. Legrand, J. Lehnert, R. C. Lemmon, V. Lenti, E. Leogrande, I. Léon Monźon, M. Leoncino, P. Lévai, S. Li, X. Li, J. Lien, R. Lietava, S. Lindal, V. Lindenstruth, C. Lippmann, M. A. Lisa, H. M. Ljunggren, D. F. Lodato, P. I. Loenne, V. R. Loggins, V. Loginov, C. Loizides, X. Lopez, E. López Torres, A. J. Lowe, X.-G. Lu, P. Luettig, M. Lunardon, G. Luparello, A. Maevskaya, M. Mager, S. Mahajan, S. M. Mahmood, A. Maire, R. Majka, M. Malaev, I. Maldonado Cervantes, L. Malinina, D. Mal’Kevich, P. Malzacher, A. Mamonov, L. Manceau, V. Manko, F. Manso, V. Manzari, M. Marchisone, J. Mareš, G. V. Margagliotti, A. Margotti, J. Margutti, A. Marı́n, C. Markert, M. Marquard, N. A. Martin, J. Martin Blanco, P. Martinengo, M. Martı́nez, G. Garcı́a, M. Martinez Pedreira, Y. Martynov, A. Mas, S. Masciocchi, M. Masera, A. Masoni, L. Massacrier, A. Mastroserio, H. Masui, A. Matyja, Christoph Mayer, J. Mazer, M. A. Mazzoni, D. McDonald, F. Meddi, A. Menchaca‐Rocha, E. Meninno, J. Mercado Pérez, M. Meres, Y. Miake, M. M. Mieskolainen, K. Mikhaylov, L. Milano, J. Milošević, L. M. Minervini, A. Mischke, Aditya Nath Mishra, D. Miśkowiec, J. Mitra, C. M. Mitu, N. Mohammadi, B. Mohanty, L. Molnár, L. Montaño Zetina, E. Montes, M. Morando, D. A. Moreira De Godoy, S. Moretto, A. Morreale, A. Morsch, V. Muccifora, E. Mudnić, D. Mühlheim, S. Muhuri, M. Mukherjee, H. Müller, J. D. Mulligan, M. G. Munhoz, S. Murray, L. Musa, J. Mušinský, B. K. Nandi, R. Nania, E. Nappi, M. U. Naru, C. Nattrass, K. Nayak, T. K. Nayak, S. Nazarenko, A. Nedosekin, L. Nellen, F. Ng, M. Nicassio, M. Niculescu, J. Niedziela, B. S. Nielsen, S. Nikolaev, S. Nikulin, V. Nikulin, F. Noferini, P. Nomokonov, G. Nooren, J. Norman, A. Nyanin, J. Nystrand, H. Oeschler, S. B. Oh, S. Oh, A. Ohlson, A. Okatan, T. Okubo, L. Oláh, J. Oleniacz, A. C. Oliveira Da Silva, Michael Henry Oliver, J. Onderwaater, C. Oppedisano, A. Ortiz Velasquez, A. Öskarsson, J. Otwinowski, K. Oyama, K. Ozdemir, Y. Pachmayer, P. Pagano, G. Paić, C. Pajares, S. K. Pal, J. Pan, A. K. Pandey, D. Pant, V. Papikyan, G. S. Pappalardo, P. Pareek, W. J. Park, S. Parmar, A. Passfeld, V. Paticchio, B. Paul, T. Pawlak, T. Peitzmann, H. Pereira Da Costa, E. Pereira De Oliveira Filho, D. Peresunko, C. Lara, V. Peskov, Y. Pestov, V. Petráček, V. Petrov, M. Petrovici, C. Petta, S. Piano, M. Pikna, P. Pillot, O. Pinazza, L. Pinsky, D. B. Piyarathna, M. Płoskoń, M. Planinić, J. Pluta, S. Pochybová, P. L.M. Podesta-Lerma, M. G. Poghosyan, B. Polichtchouk, N. Poljak, W. Poonsawat, A. Pop, S. Porteboeuf-Houssais, J. Porter, J. Pospı́šil, Sidharth Kumar Prasad, R. Preghenella, F. Prino, C. Pruneau, I. Pshenichnov, M. Puccio, G. Puddu, P. R. Pujahari, V. Punin, J. Putschke, H. Qvigstad, A. Rachevski, S. Raha, S. Rajput, J. Rak, A. Rakotozafindrabe, L. Ramello, R. Raniwala, S. Raniwala, Sami Sakari Rasanen, B. T. Rascanu, D. Rathee, V. Razazi, K. F. Read, J. S. Réal, K. Redlich, R. Reed, A. Rehman, P. Reichelt, M. Reicher, F. Reidt, X. Ren, R. Renfordt, A. R. Reolon, A. Reshetin, F. Rettig, J.-P. Revol, K. Reygers, V. Riabov, R. A. Ricci, T. Richert, Matthias Richter, P. Riedler, W. Riegler, F. Riggi, C. Ristea, A. Rivetti, E. Rocco, M. Rodríguez Cahuantzi, A. Rodriguez Manso, K. Røed, E. Rogochaya, D. Røhr, D. Röhrich, R. Romita, F. Ronchetti, L. Ronflette, P. Rosnet, A. M. Rossi, F. Roukoutakis, A. Roy, C. Roy, P. Roy, A.J. Rubio Montero, R. Rui, R. Russo, E. Ryabinkin, Y. F. Ryabov, A. Rybicki, S. Sadovsky, K. Šafǎŕık, B. Sahlmuller, P. Sahoo, R. Sahoo, S. Sahoo, P. K. Sahu, J. Saini, S. Sakai, M. A. Saleh, Carlos A. Salgado, J. Salzwedel, S. Sambyal, V. Samsonov, X. Sanchez Castro, L. Šándor, A. Sandoval, M. Sano, G. Santagati, D. Sarkar, E. Scapparone, F. Scarlassara, R. P. Scharenberg, C. Schiaua, R. Schicker, C. Schmidt, H. R. Schmidt, S. Schuchmann, J. Schukraft, Martin Schulc, T. Schuster, Y. Schütz, K. Schwarz, K. Schweda, G. Scioli, E. Scomparin, R. Scott, K. S. Seeder, J. Seger, Y. Sekiguchi, I. Selyuzhenkov, K. Senosi, J. Seo, E. Serradilla, A. Sevcenco, A. Shabanov, A. Shabetai, O. Shadura, R. Shahoyan, A. Shangaraev, A. Sharma, N. Sharma, K. Shigaki, K. Shtejer, Y. Sibiriak, S. Siddhanta, K. M. Sielewicz, T. Siemiarczuk, D. Silvermyr, C. Silvestre, G. Simatovic, G. Simonetti, R. Singaraju, R. Singh, S. Singha, V. Singhal, Bikash Sinha, T. Sinha, B. Sitár, M. Sitta, T. B. Skaali, M. Słupecki, N. Smirnov, Raimond Snellings, T. W. Snellman, C. Søgaard, R. A. Soltz, J. Song, M. Song, Zixuan Song, F. Soramel, S. Sörensen, M. Špaček, E. Spiriti, I. Sputowska, M. Stassinaki, B. Srivastava, J. Stachel, I. Stan, G. Stefanek, M. Steinpreis, E. Stenlund, G. Steyn, J. H. Stiller, D. Stocco, P. Strmeň, Alexandre Alarcon Do Passo Suaide, T. Sugitate, C. Suire, M. Suleymanov, R. Sultanov, M. Šumbera, T. J. M. Symons, A. Szabó, A. Szanto de Toledo, I. Szarka, A. Szczepankiewicz, M. Szymański, J. Takahashi, N. Tanaka, M. A. Tangaro, J. D. Tapia ∋Takaki, A. Tarantola Peloni, Mohammad Tariq, M. G. Târzilă, A. Tauro, G. Tejeda Muñoz, A. Telesca, K. Terasaki, C. Terrevoli, B. Teyssier, J. Thäder, D. Thomas, R. Tieulent, A. R. Timmins, A. Toia, S. Trogolo, V. Trubnikov, W. H. Trzaska, T. Tsuji, A. Tumkin, R. Turrisi, Trine Spedstad Tveter, K. Ullaland, A. Uras, G. L. Usai, A. Utrobicic, M. Vajzer, M. Vala, L. Valencia Palomo, S. Vallero, J. Van Der Maarel, J. W. Van Hoorne, M. van Leeuwen, T. Vǎnát, P. Vande Vyvre, D. Varga, A. Vargas, M. Vargyas, R. Varma, M. Vasileiou, A. Vasiliev, A. Vauthier, V. Vechernin, A. M. Veen, M. Veldhoen, A. Velure, M. Venaruzzo, E. Vercellin, S. Vergara Limón, R. Vernet, M. Verweij, L. Vickovic, G. Viesti, J. Viinikainen, Z. Vilakazi, O. Villalobos Baillie, А. Виноградов, L. Vinogradov, Y. Vinogradov, T. Virgili, V. Vislavicius, Y. P. Viyogi, A. Vodopyanov, Martin Andreas Volkl, K. Voloshin, S. A. Voloshin, G. Volpe, B. von Haller, I. Vorobyev, D. Vranić, J. Vrláková, B. Vulpescu, A. Vyushin, B. Wagner, Jan Wagner, H. Wang, M. Wang, Y. Wang, Daisuke Watanabe, Martin Weber, S. G. Weber, J. P. Wessels, U. Westerhoff, J. Wiechuła, J. Wikne, M. Wilde, G. Wilk, J. Wilkinson, M. C. S. Williams, B. Windelband, Michael Andreas Winn, C. G. Yaldo, Y. Yamaguchi, H. J. Yang, P. Yang, S. Yano, S. Yasnopolskiy, Z. Yin, H. Yokoyama, I. K. Yoo, V. Yurchenko, I. E. Yushmanov, A. Zaborowska, V. Zaccolo, A. Zaman, C. Zampolli, Henrique José Correia Zanoli, S. Zaporozhets, A. Zarochentsev, P. Závada, N. Zaviyalov, H. Zbroszczyk, I. S. Zgura, M. Zhalov, H. Zhang, X. Zhang, Y. Zhang, C. Zhao, N. Zhigareva, D. Zhou, Y. Zhou, Z. Zhou, H. Zhu, J. Zhu, X. Zhu, A. Zichichi, A. Zimmermann, M. B. Zimmermann, G. Zinovjev, M. Zyzak
Software Mentions: 2
Published: over 10 years ago

10.12688/f1000research.6060.1

Structure and dynamics of the membrane attaching nitric oxide transporter nitrophorin 7
Cited by: 3
Author(s): Markus Knipp, Hideaki Ogata, Giancarlo Soavi, Giulio Cerullo, Alessandro Allegri, Stefania Abbruzzetti, Stefano Bruno, Cristiano Viappiani, Axel Bidon‐Chanal, F. Javier Luque
Software Mentions: 2
Published: almost 11 years ago

10.1111/febs.15601

Angiotensin‐converting enzyme open for business: structural insights into the subdomain dynamics
Cited by: 16
Author(s): Gyles E. Cozier, Lizelle Lubbe, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: about 5 years ago

10.1111/febs.13930

Hydrogen peroxide‐mediated conversion of coproheme to heme b by HemQ—lessons from the first crystal structure and kinetic studies
Cited by: 36
Author(s): Stefan Hofbauer, Georg Mlynek, Lisa Milazzo, Dominic Pühringer, Daniel Maresch, Irene Schaffner, Paul G. Furtmüller, Giulietta Smulevich, Kristina Djinović-Carugo, Christian Obinger
Software Mentions: 2
Published: about 9 years ago

10.1002/1873-3468.13246

Tripeptide binding in a proton‐dependent oligopeptide transporter
Cited by: 20
Author(s): Maria Martinez Molledo, E.M. Quistgaard, Christian Löw
Software Mentions: 2
Published: over 7 years ago

10.1002/2211-5463.12644

Structural insights into interactions between viral suppressor of <scp>RNA</scp> silencing protein p19 mutants and small <scp>RNA</scp>s
Cited by: 5
Author(s): Dana V. Foss, N.T. Schirle, Ian J. MacRae, John Paul Pezacki
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2016.00160

Structural Insights into Substrate Recognition by Clostridium difficile Sortase
Cited by: 4
Author(s): Jui-Chieh Yin, Chun-Hsien Fei, Yen-Chen Lo, Y.-Y. Hsiao, Jyun-Cyuan Chang, Jay C. Nix, Yuan-Yu Chang, Lee‐Wei Yang, I-Hsiu Huang, Shuying Wang
Software Mentions: 2
Published: about 9 years ago

10.3389/fcimb.2018.00051

Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Cited by: 13
Author(s): Xiujuan Zhang, Yuanmei Zhu, Hao Hu, Senyan Zhang, Pengfei Wang, Huihui Chong, Jin‐Sheng He, Xinquan Wang, Yuxian He
Software Mentions: 2
Published: almost 8 years ago

10.3389/fcimb.2017.00411

Structure-Based Prototype Peptides Targeting the Pseudomonas aeruginosa Type VI Secretion System Effector as a Novel Antibacterial Strategy
Cited by: 14
Author(s): Xiaopan Gao, Zhixia Mu, Bo Qin, Yicheng Sun, Sheng Cui
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2021.632423

MazEF Toxin-Antitoxin System-Mediated DNA Damage Stress Response in Deinococcus radiodurans
Cited by: 10
Author(s): Jingli Dai, Zijing Chen, Jinfeng Hou, Yudong Wang, Miao Guo, Junhui Cao, Liangyan Wang, Hong Xu, Bing Teng, Ye Zhao
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2021.592447

Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism
Cited by: 4
Author(s): Xiaohui Wei, Song Wang, Zhuolin Li, Zibin Li, Zehui Qu, Suqiu Wang, Baohua Zou, Ruiying Liang, Chun Xia, Nianzhi Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2020.01529

The Effects of Framework Mutations at the Variable Domain Interface on Antibody Affinity Maturation in an HIV-1 Broadly Neutralizing Antibody Lineage
Cited by: 11
Author(s): Jeffrey Zhou, Hussain Zaidi, Therese Ton, Daniela Fera
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.02995

Illumination of PRRSV Cytotoxic T Lymphocyte Epitopes by the Three-Dimensional Structure and Peptidome of Swine Lymphocyte Antigen Class I (SLA-I)
Cited by: 11
Author(s): Xiaocheng Pan, Nianzhi Zhang, Xiaohui Wei, Yinan Jiang, Rong Chen, Qirun Li, Ruiying Liang, Lijie Zhang, Lizhen Ma, Chun Xia
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.625808

Structural Basis of VSIG3: The Ligand for VISTA
Cited by: 11
Author(s): Xiaoxue Xie, Caiping Chen, Wenting Chen, Jingwei Jiang, Lanlan Wang, Tingting Li, Hongbin Sun, Jun Li
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.01466

Insight Into the Interaction Between RNA Polymerase and VPg for Murine Norovirus Replication
Cited by: 10
Author(s): Jihye Lee, Beom Seok Park, Kang Rok Han, Scott B. Biering, Soo J Kim, Jayoung Choi, Jong Hyeon Seok, Intekhab Alam, Mi Sook Chung, Ho M. Kim, Seungmin Hwang, Kyung H. Kim
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2019.00326

The Antimicrobials Anacardic Acid and Curcumin Are Not-Competitive Inhibitors of Gram-Positive Bacterial Pathogenic Glyceraldehyde-3-Phosphate Dehydrogenase by a Mechanism Unrelated to Human C5a Anaphylatoxin Binding
Cited by: 8
Author(s): Sara Gómez, Javier Querol-García, G. Sanchez-Barron, Marta Subías, Alex González-Alsina, V. Franco-Hidalgo, Sebastián Albertí, Santiago Rodrı́guez de Córdoba, Francisco Fernández, M. Cristina Vega
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2021.670681

Structural Basis of RICs Iron Donation for Iron-Sulfur Cluster Biogenesis
Cited by: 4
Author(s): Liliana S. O. Silva, Pedro M. Matías, Célia V. Romão, Lı́gia M. Saraiva
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.02079

A Unique Homo-Hexameric Structure of 2-Aminomuconate Deaminase in the Bacterium Pseudomonas species AP–3
Cited by: 3
Author(s): Yanjuan Chen, Yiping Chen, Hua Jiang, Deren Lu, Tingting Hu, Gang Bi, Yuping Ran, Bin Yu, Hao Dong, Dan Su
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.01468

Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase From Shigella flexneri
Cited by: 15
Author(s): Xiaopan Gao, Zhixia Mu, Xia Yu, Bo Qin, Justyna Aleksandra Wojdyla, Meitian Wang, Sheng Cui
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.02755

Characterization of a Dimeric Arginase From Zymomonas mobilis ZM4
Cited by: 6
Author(s): Seung-A Hwangbo, Jiwon Kim, Sun-Ju Jung, Kyeong Sik Jin, Jie‐Oh Lee, Ji Soo Kim, Suk-Youl Park
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.01178

Structural and Functional Characterization of a Unique AP Endonuclease From Deinococcus radiodurans
Cited by: 6
Author(s): Yuan He, Yiyi Wang, Qin Chen, Ying Xu, Kaiying Cheng, Hong Xu, Bing Teng, Ye Zhao, Liangyan Wang, Yuejin Hua
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.01309

Comparative Study of Two Chondroitin Sulfate/Dermatan Sulfate 4-O-Sulfatases With High Identity
Cited by: 6
Author(s): Shumin Wang, Tianning Su, Qingdong Zhang, Jingwen Guan, Jing He, Lichuan Gu, Fuchuan Li
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2021.642606

Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus thermophilus
Cited by: 2
Author(s): Julien Cappele, Abbas M. Ali, Nathalie Leblond‐Bourget, Sandrine Mathiot, Tiphaine Dhalleine, Sophie Payot, Martin Savko, Claude Didierjean, F. Favier, Badreddine Douzi
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmolb.2017.00068

Structure and Interactions of the TPR Domain of Sgt2 with Yeast Chaperones and Ybr137wp
Cited by: 18
Author(s): E. Krysztofinska, N.J. Evans, Arjun Thapaliya, James W. Murray, Rhodri M. L. Morgan, Santiago Martínez-Lumbreras, Rivka L. Isaacson
Software Mentions: 2
Published: about 8 years ago

10.3389/fphar.2019.00474

Crystal Structure of the Monomeric Extracellular Domain of α9 Nicotinic Receptor Subunit in Complex With α-Conotoxin RgIA: Molecular Dynamics Insights Into RgIA Binding to α9α10 Nicotinic Receptors
Cited by: 38
Author(s): Marios Zouridakis, Athanasios Papakyriakou, Igor A. Ivanov, Igor E. Kasheverov, Victor I. Tsetlin, Socrates J. Tzartos, Petros Giastas
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2017.00681

Target Identification of Mycobacterium tuberculosis Phenotypic Hits Using a Concerted Chemogenomic, Biophysical, and Structural Approach
Cited by: 21
Author(s): Grace Mugumbate, V. Mendes, M. Błaszczyk, Mohamad Sabbah, George Papadatos, Joël Lelièvre, Lluís Ballell, David Barros, C. Abell, Tom L. Blundell, John P. Overington
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2017.00202

Improved Model of Proton Pump Crystal Structure Obtained by Interactive Molecular Dynamics Flexible Fitting Expands the Mechanistic Model for Proton Translocation in P-Type ATPases
Cited by: 26
Author(s): Dorota Focht, Tristan I. Croll, Bjørn Panyella Pedersen, Poul Nissen
Software Mentions: 2
Published: over 8 years ago

10.3389/fphys.2013.00320

The N-terminal cytoplasmic region of NCBE displays features of an intrinsic disordered structure and represents a novel target for specific drug screening
Cited by: 3
Author(s): Kaare Bjerregaard-Andersen, Harmonie Perdreau‐Dahl, Hanne Guldsten, Jeppe Prætorius, Jan K. Jensen, J. Preben Morth
Software Mentions: 2
Published: about 13 years ago

10.3389/fpls.2019.01229

Crystal Structure Of Photorespiratory Alanine:Glyoxylate Aminotransferase 1 (AGT1) From Arabidopsis thaliana
Cited by: 9
Author(s): Aaron H. Liepman, J. Vijayalakshmi, Daniel Peisach, Brian Hulsebus, Laura J. Olsen, Mark A. Saper
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2018.01737

Expanding the Plant GSTome Through Directed Evolution: DNA Shuffling for the Generation of New Synthetic Enzymes With Engineered Catalytic and Binding Properties
Cited by: 10
Author(s): Evangelia Chronopoulou, Anastassios C. Papageorgiou, Farid S. Ataya, Irini Nianiou-Obeidat, Panagiotis Madesis, Nikolaos E. Labrou
Software Mentions: 2
Published: about 7 years ago

10.3390/genes8100278

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle
Cited by: 8
Author(s): Bohdan Schneider, Paulína Božíková, Petr Čech, Daniel Svozil, Jiří Černý
Software Mentions: 2
Published: about 8 years ago

10.1172/jci.insight.135459

Intrahepatic heteropolymerization of M and Z alpha-1-antitrypsin
Cited by: 13
Author(s): Mattia Laffranchi, Emma Elliston, Elena Miranda, Juan Pérez, Riccardo Ronzoni, Alistair M. Jagger, Nina Heyer-Chauhan, Mark Brantly, Annamaria Fra, David A. Lomas, James A. Irving
Software Mentions: 2
Published: over 5 years ago

10.1107/S0021889811041161

iotbx.cif: a comprehensive CIF toolbox
Cited by: 539
Author(s): Richard J. Gildea, Luc J. Bourhis, Oleg V. Dolomanov, Ralf W. Grosse‐Kunstleve, Horst Puschmann, Paul D. Adams, Judith A. K. Howard
Software Mentions: 2
Published: about 14 years ago

10.1107/S1600576715010432

Programming new geometry restraints: parallelity of atomic groups
Cited by: 13
Author(s): Oleg Sobolev, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M113.480657

Ca2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E
Cited by: 27
Author(s): Daopeng Yuan, Anthony H. Keeble, Richard G. Hibbert, Stella M. Fabiane, Hannah J. Gould, James M. McDonnell, Andrew J. Beavil, Brian J. Sutton, B. Dhaliwal
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M113.491415

Conformational Plasticity and Ligand Binding of Bacterial Monoacylglycerol Lipase
Cited by: 39
Author(s): Srinivasan Rengachari, P. Aschauer, Matthias Schittmayer, Nicole Mayer, Karl Gruber, Rolf Breinbauer, Ruth Birner‐Gruenberger, Ingrid Dreveny, Monika Oberer
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.M113.534628

Crystal Structures of Leukotriene C4 Synthase in Complex with Product Analogs
Cited by: 22
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Ulrika Olsson, Shabbir Ahmad, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 2
Published: almost 12 years ago

10.1074/jbc.M114.611780

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites
Cited by: 53
Author(s): Kye‐Won Kim, Clyde A. Smith, Michael D. Daily, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 2
Published: about 11 years ago

10.1074/jbc.M115.659136

Structural and Functional Analysis of BipA, a Regulator of Virulence in Enteropathogenic Escherichia coli
Cited by: 31
Author(s): H. Fan, Joseph Hahm, Stephen Diggs, J. Jefferson P. Perry, Gregor Blaha
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M115.669895

Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease
Cited by: 27
Author(s): Xi Chen, Kathrin Hnida, Melissa A. Graewert, Jan Terje Andersen, Rasmus Iversen, Anne Tuukkanen, Dmitri I. Svergun, Ludvig M. Sollid
Software Mentions: 2
Published: over 10 years ago

10.1074/jbc.M115.659912

Uncovering the Mechanism of Aggregation of Human Transthyretin
Cited by: 112
Author(s): Lorena Saelices, Lisa M. Johnson, Wilson Y. Liang, M.R. Sawaya, Duilio Cascio, Piotr Ruchala, Julian P. Whitelegge, Lin Jiang, Roland Riek, David Eisenberg
Software Mentions: 2
Published: about 10 years ago

10.1074/jbc.M115.685065

Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity
Cited by: 13
Author(s): Min‐Feng Hsu, Hsu Yuan Fu, Chun-Jie Cai, Hsiu-Pin Yi, Chii‐Shen Yang, Andrew H.-J. Wang
Software Mentions: 2
Published: about 10 years ago

10.1074/jbc.M115.672790

Agonistic Human Antibodies Binding to Lecithin-Cholesterol Acyltransferase Modulate High Density Lipoprotein Metabolism
Cited by: 29
Author(s): Ruwanthi N. Gunawardane, Preston Fordstrom, Derek E. Piper, Stephanie Masterman, Sophia Siu, Dongming Liu, M Ichael S. Brown, Mei Lü, Jie Tang, Richard Zhang, Janet Cheng, Andrew J. Gates, David Meininger, Janice Chan, Tim Carlson, Nigel Walker, Margrit Schwarz, John Delaney, Mingyue Zhou
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep16441

Crystal structure of an antigenic outer-membrane protein from Salmonella Typhi suggests a potential antigenic loop and an efflux mechanism
Cited by: 6
Author(s): Hong‐Hsiang Guan, Masato Yoshimura, Phimonphan Chuankhayan, Chien-Chih Lin, Nai-Chi Chen, Ming‐Chi Yang, Asma Ismail, Hoong‐Kun Fun, Chun‐Jung Chen
Software Mentions: 2
Published: about 10 years ago

10.1038/srep16950

Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis
Cited by: 57
Author(s): Sergio de Cima, Luis Mariano Polo, Carmen Dı́ez-Fernández, Ana Isabel Martínez, Javier Cervera, Ignacio Fita, Vicente Rubio
Software Mentions: 2
Published: about 10 years ago

10.1038/srep18292

A unique GCN5-related glucosamine N-acetyltransferase region exist in the fungal multi-domain glycoside hydrolase family 3 β-N-acetylglucosaminidase
Cited by: 10
Author(s): Zhen Qin, Yibei Xiao, Xinbin Yang, J.R. Mesters, Shaoqing Yang, Zhengqiang Jiang
Software Mentions: 2
Published: about 10 years ago

10.1038/srep19501

Comprehensive Structural Characterization of the Bacterial Homospermidine Synthase–an Essential Enzyme of the Polyamine Metabolism
Cited by: 17
Author(s): Sebastian Krossa, Annette Faust, Dietrich Ober, Axel J. Scheidig
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep19981

Structural and functional attributes of malaria parasite diadenosine tetraphosphate hydrolase
Cited by: 12
Author(s): Amit Sharma, Manickam Yogavel
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep22127

In-situ and real-time growth observation of high-quality protein crystals under quasi-microgravity on earth
Cited by: 7
Author(s): Akira Nakamura, Jun Ohtsuka, Tatsuki Kashiwagi, Nobutaka Numoto, Noriyuki Hirota, Takahiro Ode, Hidehiko Okada, Koji Nagata, Motosuke Kiyohara, E Suzuki, Akiko Kita, Hitoshi Wada, Masaru Tanokura
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep28226

MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode
Cited by: 13
Author(s): T. Wagner, Ulrich Ermler, Seigo Shima
Software Mentions: 2
Published: over 9 years ago

10.1038/srep28488

Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway
Cited by: 27
Author(s): Sunyong Kim, Yuka Tachioka, Tomoyuki Mori, Toshio Hakoshima
Software Mentions: 2
Published: over 9 years ago

10.1038/srep29135

Identification, Characterization and X-ray Crystallographic Analysis of a Novel Type of Mannose-Specific Lectin CGL1 from the Pacific Oyster Crassostrea gigas
Cited by: 33
Author(s): Hajime Unno, Kazuki Matsuyama, Yoshiteru Tsuji, Shuichiro Goda, Keiko Hiemori, Hiroaki Tateno, Jun Hirabayashi, Tomomitsu Hatakeyama
Software Mentions: 2
Published: over 9 years ago

10.1038/srep30494

Crystal structures of RidA, an important enzyme for the prevention of toxic side products
Cited by: 13
Author(s): Xiwen Liu, Jianhua Zeng, Xiaolei Chen, Wei Xie
Software Mentions: 2
Published: over 9 years ago

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Papers Mentioning PHENIX 2,287