cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1016/j.molimm.2017.11.022

Crystal structures of murine and human Histamine-Releasing Factor (HRF/TCTP) and a model for HRF dimerisation in mast cell activation
Cited by: 12
Author(s): K.A. Dore, Jun‐ichi Kashiwakura, James M. McDonnell, Hannah Gould, Toshiaki Kawakami, Brian J. Sutton, Anna M. Davies
Software Mentions: 3
Published: over 8 years ago

10.1016/j.molimm.2016.11.021

Room temperature structure of human IgG4-Fc from crystals analysed in situ
Cited by: 7
Author(s): Anna M. Davies, Theo Rispens, Pleuni Ooijevaar-de Heer, Rob C. Aalberse, Brian J. Sutton
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2019.02084

YtrASa, a GntR-Family Transcription Factor, Represses Two Genetic Loci Encoding Membrane Proteins in Sulfolobus acidocaldarius
Cited by: 9
Author(s): Liesbeth Lemmens, Laurentijn Tilleman, Ezra De Koning, K. Valegård, Ann-Christin Lindås, Filip Van Nieuwerburgh, Dominique Maes, Eveline Peeters
Software Mentions: 3
Published: about 7 years ago

10.3389/fcimb.2020.00082

Francisella novicida Two-Component System Response Regulator BfpR Modulates iglC Gene Expression, Antimicrobial Peptide Resistance, and Biofilm Production
Cited by: 6
Author(s): Scott N. Dean, Morgan E. Milton, John Cavanagh, Monique L. van Hoek
Software Mentions: 3
Published: over 6 years ago

10.1016/j.febslet.2015.11.030

Crystal structure of the Z-ring associated cell division protein ZapC from Escherichia coli
Cited by: 13
Author(s): Cristina Ortiz, Danguole Kureisaite-Ciziene, Florian Schmitz, Stephen H. McLaughlin, Miguel Vicente, Jan Löwe
Software Mentions: 3
Published: almost 11 years ago

10.1107/S1600576720002423

Application of a high-throughput microcrystal delivery system to serial femtosecond crystallography
Cited by: 21
Author(s): Donghyeon Lee, Sehan Park, Keondo Lee, Jang Woo Kim, Gisu Park, Ki Hyun Nam, Sangwon Baek, Wan Kyun Chung, Jong‐Lam Lee, Yunje Cho, Jaehyun Park
Software Mentions: 3
Published: over 6 years ago

10.1107/S1744309113012931

Structure of PatF fromProchloron didemni
Cited by: 26
Author(s): Andrew F. Bent, Jesko Koehnke, Wael E. Houssen, Margaret Caroline MacHin Smith, Marcel Jaspars, James H. Naismith
Software Mentions: 3
Published: over 13 years ago

10.15252/embj.2021107985

Neutralization of SARS‐CoV‐2 by highly potent, hyperthermostable, and mutation‐tolerant nanobodies
Cited by: 56
Author(s): Thomas Güttler, Metin Aksu, Antje Dickmanns, Kim M. Stegmann, Kathrin Gregor, Renate Rees, Waltraud Taxer, Oleh Rymarenko, Jürgen Schünemann, Christian Dienemann, Philip Gunkel, Bianka Mußil, Jens Krull, Ulrike Teichmann, Uwe Groß, Volker C. Cordes, Matthias Dobbelstein, Dirk Görlich
Software Mentions: 3
Published: about 5 years ago

10.1016/j.jsb.2020.107545

Mitigating local over-fitting during single particle reconstruction with SIDESPLITTER
Cited by: 72
Author(s): Kailash Ramlaul, Colin M. Palmer, Takanori Nakane, C.H.S. Aylett
Software Mentions: 3
Published: about 6 years ago

10.1016/j.yjsbx.2020.100031

In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors
Cited by: 1
Author(s): Jingxu Guo, A. Douangamath, Weixiao Song, Alun R. Coker, A. W. Edith Chan, Steve Wood, J.B. Cooper, E. Resnick, Nir London, F. von Delft
Software Mentions: 3
Published: over 6 years ago

10.1107/S0907444912001308

Towards automated crystallographic structure refinement with phenix.refine
Cited by: 4,334
Author(s): Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Nathaniel Echols, Jeffrey J. Headd, Nigel W. Moriarty, Marat Mustyakimov, Thomas C. Terwilliger, Alexandre Urzhumtsev, Peter H. Zwart, Paul D. Adams
Software Mentions: 3
Published: over 14 years ago

10.1007/s00792-013-0542-8

The role of disulfide bond in hyperthermophilic endocellulase
Cited by: 13
Author(s): Han-Woo Kim, Kazuhiko Ishikawa
Software Mentions: 3
Published: over 13 years ago

10.1038/s42003-021-02518-y

14-3-3 proteins inactivate DAPK2 by promoting its dimerization and protecting key regulatory phosphosites
Cited by: 18
Author(s): Matej Horvath, Olívia Petrvalská, Petr Heřman, Veronika Obšilová, Tomáš Obšil
Software Mentions: 3
Published: about 5 years ago

10.1038/s42003-020-01123-9

Structure and function of a malaria transmission blocking vaccine targeting Pfs230 and Pfs230-Pfs48/45 proteins
Cited by: 34
Author(s): Kavita Singh, Martin Burkhardt, Sofia Nakuchima, Raúl Herrera, Olga Muratova, Apostolos G. Gittis, Emily Kelnhofer, Karine Reiter, Margery Smelkinson, Daniel Veltri, Bruce J. Swihart, Richard L. Shimp, Vu Nguyen, Baoshan Zhang, Nicholas J. MacDonald, Patrick E. Duffy, David N. Garboczi, David L. Narum
Software Mentions: 3
Published: about 6 years ago

10.15252/embj.2018100825

Diverse roles of TssA‐like proteins in the assembly of bacterial type VI secretion systems
Cited by: 34
Author(s): Johannes Schneider, Sergey Nazarov, Ricardo Adaixo, Martina Liuzzo, Peter David Ringel, Henning Stahlberg, Marek Basler
Software Mentions: 3
Published: about 7 years ago

10.1111/febs.15514

Structure‐based design of peptides that trigger Streptococcus pneumoniae cell death
Cited by: 11
Author(s): Sung-Min Kang, Chun Jin, Do-Hee Kim, Sung Jean Park, Sang-Woo Han, Bong-Jin Lee
Software Mentions: 3
Published: about 6 years ago

10.1128/JB.00115-20

A Novel Growth-Based Selection Strategy Identifies New Constitutively Active Variants of the Major Virulence Regulator PrfA in Listeria monocytogenes
Cited by: 4
Author(s): S. Hansen, Michael Hall, C. Grundström, Kristoffer Brännström, A. Elisabeth Sauer‐Eriksson, Jörgen Johansson
Software Mentions: 3
Published: over 6 years ago

10.1038/celldisc.2016.51

Structural mechanism for the arginine sensing and regulation of CASTOR1 in the mTORC1 signaling pathway
Cited by: 33
Author(s): Zhongchao Gai, Qian Wang, Can Yang, Lei Wang, Wei Deng, Geng Wu
Software Mentions: 3
Published: over 9 years ago

10.1038/cddis.2017.487

Molecular motion regulates the activity of the Mitochondrial Serine Protease HtrA2
Cited by: 20
Author(s): M. Merski, Cátia Moreira, Rui M.V. Abreu, María J. Ramos, Pedro A. Fernandes, L. Miguel Martins, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41422-018-0104-9

Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation
Cited by: 71
Author(s): Shuai Zhao, Lan Cheng, Yifei Gao, Baichao Zhang, Xiangdong Zheng, Liang Wang, Pilong Li, Qianwen Sun, Haitao Li
Software Mentions: 3
Published: almost 8 years ago

10.1074/jbc.RA118.004469

Discovery of peptide ligands targeting a specific ubiquitin-like domain–binding site in the deubiquitinase USP11
Cited by: 24
Author(s): Anastasios Spiliotopoulos, Lia Blokpoel Ferreras, Ruth M Densham, Simon G. Caulton, Ben C. Maddison, Joanna R. Morris, James E. Dixon, Kevin C. Gough, Ingrid Dreveny
Software Mentions: 3
Published: over 7 years ago

10.1007/s11103-020-01052-5

Structural insights into Arabidopsis ethylene response factor 96 with an extended N-terminal binding to GCC box
Cited by: 12
Author(s): Chun‐Yen Chen, Pei‐Hsuan Lin, Kun-Hung Chen, Yi-Sheng Cheng
Software Mentions: 3
Published: about 6 years ago

10.1107/S0108767310039140

Geometric properties of nucleic acids with potential for autobuilding
Cited by: 11
Author(s): Tim Gruene, George M. Sheldrick
Software Mentions: 3
Published: almost 16 years ago

10.1371/journal.pone.0232846

Diversity in kinetics correlated with structure in nano body-stabilized LacY
Cited by: 3
Author(s): Atul Kumar Johri, J. Finer-Moore, И. Н. Смирнова, Vladimir N. Kasho, Els Pardon, Jan Steyaert, H. Ronald Kaback, Robert M. Stroud
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0156344

A Novel Phenanthridionone Based Scaffold As a Potential Inhibitor of the BRD2 Bromodomain: Crystal Structure of the Complex
Cited by: 11
Author(s): Shailesh Tripathi, Shruti Mathur, Prashant Deshmukh, R Manjula, Balasundaram Padmanabhan
Software Mentions: 3
Published: over 10 years ago

10.1111/cea.12230

Human <scp>I</scp> g <scp>E</scp> against the major allergen <scp>B</scp> et v 1 – defining an epitope with limited cross‐reactivity between different <scp>PR</scp> ‐10 family proteins
Cited by: 20
Author(s): Mattias Levin, Anna M. Davies, Maria Liljekvist, Fredrika Carlsson, Hannah J. Gould, Brian J. Sutton, Mats Ohlin
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0058333

Structural Insights into Putative Molybdenum Cofactor Biosynthesis Protein C (MoaC2) from Mycobacterium tuberculosis H37Rv
Cited by: 2
Author(s): Vijay Kumar Srivastava, Shubra Srivastava, Ashish Arora, J. Venkatesh Pratap
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0218300

The Dps4 from Nostoc punctiforme ATCC 29133 is a member of His-type FOC containing Dps protein class that can be broadly found among cyanobacteria
Cited by: 8
Author(s): Christoph Howe, Vamsi K. Moparthi, Felix M. Ho, Karina Persson, Karin Stensjö
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0232959

Crystal structure of Thermus thermophilus methylenetetrahydrofolate dehydrogenase and determinants of thermostability
Cited by: 7
Author(s): Fernando Maiello, Gloria Gallo, Camila Coelho, Fernanda Sucharski, Leon Hardy, Martin Würtele
Software Mentions: 3
Published: over 6 years ago

10.1107/S2059798318006678

Engineering glycoside hydrolase stability by the introduction of zinc binding
Cited by: 1
Author(s): Thomas L. Ellinghaus, J.H. Pereira, R.P. McAndrew, Ditte Hededam Welner, Andy DeGiovanni, Joel M. Guenther, Huu M. Tran, Taya Feldman, Blake A. Simmons, Kenneth L. Sale, Paul D. Adams
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0156067

Crystal Structures of Putative Sugar Kinases from Synechococcus Elongatus PCC 7942 and Arabidopsis Thaliana
Cited by: 0
Author(s): Yuan Xie, Li Mei, Wenrui Chang
Software Mentions: 3
Published: over 10 years ago

10.1093/aobpla/plw042

Experimental assessment of factors mediating the naturalization of a globally invasive tree on sandy coastal plains: a case study from Brazil
Cited by: 10
Author(s): Thalita Gabriella Zimmermann, Antônio Carlos Silva de Andrade, David M. Richardson
Software Mentions: 3
Published: about 11 years ago

10.1107/S090744491301576X

Complex structure of type VI peptidoglycan muramidase effector and a cognate immunity protein
Cited by: 17
Author(s): Tianyu Wang, Jingjin Ding, Ying Zhang, Dacheng Wang, Wei Liu
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0022767

X-Ray Structure Reveals a New Class and Provides Insight into Evolution of Alkaline Phosphatases
Cited by: 18
Author(s): Subhash C. Bihani, Amit Kumar Das, Kayzad Nilgiriwala, Vishal Prashar, Michel Pirocchi, Shree Kumar Apte, Jean‐Luc Ferrer, M.V. Hosur
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pone.0080947

Crystal Structures of the Human G3BP1 NTF2-Like Domain Visualize FxFG Nup Repeat Specificity
Cited by: 43
Author(s): T. Vognsen, Ingvar R. Möller, Ole Kristensen
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pcbi.1003478

Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor
Cited by: 69
Author(s): Brian G. Pierce, Lance M. Hellman, Moushumi Hossain, Nishant K. Singh, Craig W. Vander Kooi, Zhiping Weng, Brian M. Baker
Software Mentions: 3
Published: over 12 years ago

10.1074/jbc.M114.621789

Complex Structure and Biochemical Characterization of the Staphylococcus aureus Cyclic Diadenylate Monophosphate (c-di-AMP)-binding Protein PstA, the Founding Member of a New Signal Transduction Protein Family
Cited by: 47
Author(s): Ivan Campeotto, Yong Everett Zhang, Miroslav Mladenov, Paul S. Freemont, Angelika Gründling
Software Mentions: 3
Published: over 11 years ago

10.1016/j.cell.2021.02.045

Simultaneous binding of Guidance Cues NET1 and RGM blocks extracellular NEO1 signaling
Cited by: 18
Author(s): R.A. Robinson, Samuel C. Griffiths, Lieke L van de Haar, Tomas Malinauskas, Eljo Y. van Battum, Pavol Zelina, Rebekka A. Schwab, Dimple Karia, L. Malinauskaite, Sara Brignani, Marleen H. van den Munkhof, O. Dudukcu, A.A. De Ruiter, Dianne M.A. van den Heuvel, B. Bishop, J. Elegheert, A. Radu Aricescu, R. Jeroen Pasterkamp, Christian Siebold
Software Mentions: 3
Published: over 5 years ago

10.1038/srep33553

Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Cited by: 7
Author(s): Caiyan Wang, Qian Jia, Ran Chen, Yuming Wei, Juntao Li, Jie Ma, Wei Xie
Software Mentions: 3
Published: almost 10 years ago

10.7554/eLife.27829

Structure-based analysis of CysZ-mediated cellular uptake of sulfate
Cited by: 9
Author(s): Zahra Assur Sanghai, Qun Liu, Oliver B Clarke, Meagan Belcher Dufrisne, Pattama Wiriyasermkul, Maria Giese, Edgar Leal-Pinto, Brian Kloss, Shantelle Tabuso, J. Love, Marco Punta, Surajit Banerjee, Kanagalaghatta R. Rajashankar, Burkhard Rost, Diomedes E. Logothetis, Matthias Quick, Wayne A. Hendrickson, Filippo Mancia
Software Mentions: 3
Published: over 8 years ago

10.1107/S1399004714001308

Automated identification of elemental ions in macromolecular crystal structures
Cited by: 37
Author(s): Nathaniel Echols, Nader Morshed, Pavel V. Afonine, Airlie J. McCoy, Mitchell D. Miller, Randy J. Read, Jane S. Richardson, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0167763

Crystal Structure of the Streptomyces coelicolor Sortase E1 Transpeptidase Provides Insight into the Binding Mode of the Novel Class E Sorting Signal
Cited by: 21
Author(s): Michele D. Kattke, Albert H. Chan, Andrew Duong, Danielle L. Sexton, M.R. Sawaya, Duilio Cascio, Marie A. Elliot, Robert T. Clubb
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0096198

Structural Basis for the Site-Specific Incorporation of Lysine Derivatives into Proteins
Cited by: 16
Author(s): Veronika Flügel, Milan Vrábel, Sabine Schneider
Software Mentions: 2
Published: over 12 years ago

10.1107/S2053230X15003337

High-resolution crystal structure of a polyextreme GH43 glycosidase fromHalothermothrix oreniiwith α-<scp>L</scp>-arabinofuranosidase activity
Cited by: 7
Author(s): Noor Hassan, Lokesh D. Kori, Rosaria Gandini, Bharat K. C. Patel, Christina Divne, T.C. Tan
Software Mentions: 2
Published: over 11 years ago

10.1107/S2053230X16017891

The crystal structure of the endoglucanase Cel10, a family 8 glycosyl hydrolase fromKlebsiella pneumoniae
Cited by: 9
Author(s): Ayman Attigani, Lifang Sun, Qing Wang, Yadan Liu, Ding-Ping Bai, Shengping Li, Xiaohong Huang
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0026021

Structural and Biochemical Studies of Human 4-hydroxy-2-oxoglutarate Aldolase: Implications for Hydroxyproline Metabolism in Primary Hyperoxaluria
Cited by: 49
Author(s): Travis J. Riedel, Lynnette C. Johnson, John Knight, Roy R. Hantgan, Ross P. Holmes, W. Todd Lowther
Software Mentions: 2
Published: almost 15 years ago

10.1107/S2053230X15015939

An active site–tail interaction in the structure of hexahistidine-tagged Thermoplasma acidophilum citrate synthase
Cited by: 7
Author(s): Jesse Murphy, Stefano Donini, T.J. Kappock
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0080298

Diversification of Fungal Specific Class A Glutathione Transferases in Saprotrophic Fungi
Cited by: 37
Author(s): Yann Mathieu, P. Prosper, F. Favier, Luc Harvengt, Claude Didierjean, Jean‐Pierre Jacquot, Mélanie Morel‐Rouhier, Éric Gelhaye
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0081904

New Conformational State of NHERF1-CXCR2 Signaling Complex Captured by Crystal Lattice Trapping
Cited by: 10
Author(s): Yuanyuan Jiang, Guorong Lu, Laura Trescott, Yuning Hou, Xiaoqing Guan, Shuo Wang, Angelique Stamenkovich, J.S. Brunzelle, Nualpun Sirinupong, Chunying Li, Zhe Yang
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0004656

Unusual Armadillo Fold in the Human General Vesicular Transport Factor p115
Cited by: 25
Author(s): Harald Striegl, Yvette Roske, Daniel Kümmel, Udo Heinemann
Software Mentions: 2
Published: over 17 years ago

10.1107/S1399004714001850

A conformational landscape for alginate secretion across the outer membrane ofPseudomonas aeruginosa
Cited by: 44
Author(s): Jian Tan, Sarah L. Rouse, Dianfan Li, V.E. Pye, Lutz Vogeley, Alette Brinth, Toufic El Arnaout, John C. Whitney, P. Lynne Howell, Mark S. P. Sansom, Martin Caffrey
Software Mentions: 2
Published: about 12 years ago

10.1107/S2053230X15019986

Seeding for sirtuins: microseed matrix seeding to obtain crystals of human Sirt3 and Sirt2 suitable for soaking
Cited by: 28
Author(s): Tobias Rumpf, S. Gerhardt, Oliver Einsle, Manfred Jung
Software Mentions: 2
Published: almost 11 years ago

10.1107/S2053230X17008093

Crystal structure of a family 6 cellobiohydrolase from the basidiomycetePhanerochaete chrysosporium
Cited by: 8
Author(s): Mikako Tachioka, Akihiko Nakamura, Takuya Ishida, Kiyohiko Igarashi, Masahiro Samejima
Software Mentions: 2
Published: about 9 years ago

10.1107/S2053230X19009786

Crystal structure of the Schizosaccharomyces pombe U7BR E2-binding region in complex with Ubc7
Cited by: 1
Author(s): Z.S. Hann, Meredith B. Metzger, Allan M. Weissman, Christopher D. Lima
Software Mentions: 2
Published: about 7 years ago

10.1107/S2053230X19006472

Structure of the Prx6-subfamily 1-Cys peroxiredoxin from Sulfolobus islandicus
Cited by: 5
Author(s): Sander Stroobants, Inge Van Molle, Queen Saidi, Karl Jonckheere, Dominique Maes, Eveline Peeters
Software Mentions: 2
Published: over 7 years ago

10.1107/S1399004714019725

Structural characterization of the virulence factor nuclease A fromStreptococcus agalactiae
Cited by: 7
Author(s): A.F. Moon, Philippe Gaudu, Lars C. Pedersen
Software Mentions: 2
Published: almost 12 years ago

10.1107/S0907444912017453

Significant reduction in errors associated with nonbonded contacts in protein crystal structures: automated all-atom refinement withPrimeX
Cited by: 19
Author(s): Jeffrey A. Bell, Kenneth L. Ho, Ramy Farid
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pntd.0004132

Structural and Functional Characterization of the Enantiomers of the Antischistosomal Drug Oxamniquine
Cited by: 18
Author(s): Alexander B. Taylor, Livia Pica‐Mattoccia, C. Polcaro, Enrica Donati, Xiaoguang Cao, Annalisa Basso, Алессандра Гуиди, Anastasia R. Rugel, S. Holloway, Timothy J. Anderson, P. John Hart, Donato Cioli, Philip T. LoVerde
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0033524

Carbohydrate Recognition by an Architecturally Complex α-N-Acetylglucosaminidase from Clostridium perfringens
Cited by: 42
Author(s): E. Ficko-Blean, C.P. Stuart, M.D.L. Suits, Melissa Cid, Matthew B. Tessier, Robert J. Woods, A.B. Boraston
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0242383

The crystal structure of mouse IRG1 suggests that cis-aconitate decarboxylase has an open and closed conformation
Cited by: 4
Author(s): Hye Lin Chun, So Yeon Lee, Ki-Hwa Kim, Chang Sup Lee, Tae‐Jin Oh, Hyun Ho Park
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0146457

The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex
Cited by: 14
Author(s): N. Silva-Martin, María I. Daudén, Sebastian Glatt, N.A. Hoffmann, Panagiotis L. Kastritis, Peer Bork, Martin Beck, Christoph W. Müller
Software Mentions: 2
Published: over 10 years ago

10.1107/S2053230X17006021

Crystal structures of human Fabs targeting the Bexsero meningococcal vaccine antigen NHBA
Cited by: 4
Author(s): Martina Maritan, Roberta Cozzi, Paola Lo Surdo, Daniele Veggi, Matthew J. Bottomley, E. Malito
Software Mentions: 2
Published: over 9 years ago

10.1107/S2053230X18000250

Structure of a Talaromyces pinophilus GH62 arabinofuranosidase in complex with AraDNJ at 1.25 Å resolution
Cited by: 4
Author(s): Olga V. Moroz, L.F. Sobala, E.V. Blagova, Travis Coyle, Wei Peng, Kristian B. R. M. Krogh, Keith A. Stubbs, K.S. Wilson, G.J. Davies
Software Mentions: 2
Published: about 8 years ago

10.1107/S1399004713033841

Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting
Cited by: 46
Author(s): Lei Chen, Tian Liu, Yong Zhou, Qi Chen, Xu Shen, Qing Yang
Software Mentions: 2
Published: over 12 years ago

10.1107/S0907444911007888

Structure of HLA-A*0301 in complex with a peptide of proteolipid protein: insights into the role of HLA-A alleles in susceptibility to multiple sclerosis
Cited by: 27
Author(s): Róisín M. McMahon, Lone Smidstrup Friis, Christian Siebold, Manuel A. Friese, Lars Fugger, E Y Jones
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pgen.1004533

The TRIM-NHL Protein LIN-41 Controls the Onset of Developmental Plasticity in Caenorhabditis elegans
Cited by: 59
Author(s): Cristina Tocchini, J.J. Keusch, Sarah Miller, Susanne Finger, H. Gut, Michael Stadler, Rafal Ciosk
Software Mentions: 2
Published: about 12 years ago

10.1107/S2053230X14003355

A range of C∊3–C∊4 interdomain angles in IgE Fc accommodate binding to its receptor CD23
Cited by: 13
Author(s): B. Dhaliwal, M.O.Y. Pang, Daopeng Yuan, Andrew J. Beavil, Brian J. Sutton
Software Mentions: 2
Published: over 12 years ago

10.1107/S2053230X18002236

Crystal structure of theMSMEG_4306gene product fromMycobacterium smegmatis
Cited by: 1
Author(s): Adarsh Kumar, Subramanian Karthikeyan
Software Mentions: 2
Published: over 8 years ago

10.1107/S1399004715002308

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Cited by: 67
Author(s): A.Y. Lyubimov, Thomas D. Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B. Zeldin, Aina E. Cohen, S. Michael Soltis, E.L. Baxter, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, James M. Berger
Software Mentions: 2
Published: over 11 years ago

10.1107/S1399004714027114

Interaction of the amyloid precursor protein-like protein 1 (APLP1) E2 domain with heparan sulfate involves two distinct binding modes
Cited by: 12
Author(s): S.O. Dahms, Magnus C. Mayer, Dirk Roeser, Gerd Multhaup, Manuel E. Than
Software Mentions: 2
Published: over 11 years ago

10.1107/S2053230X19012172

Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking
Cited by: 3
Author(s): Eric Montemayor, Johanna M Virta, Lauren D. Hagler, Steven C. Zimmerman, Samuel E. Butcher
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pbio.2005160

DENR–MCTS1 heterodimerization and tRNA recruitment are required for translation reinitiation
Cited by: 30
Author(s): Yasar Luqman Ahmed, Sibylle Schleich, Jonathan Bohlen, Nicolas Mandel, Bernd Simon, Irmgard Sinning, Aurelio A. Teleman
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pbio.3001209

Structural basis for SARS-CoV-2 neutralizing antibodies with novel binding epitopes
Cited by: 31
Author(s): Dan Fu, Guangshun Zhang, Yuhui Wang, Zheng Zhang, Hengrui Hu, Shū Shěn, Jun Wu, Bo Li, Xin Li, Yaohui Fang, Jia Liu, Qiao Wang, Yunjiao Zhou, Wei Wang, Yufeng Li, Zhonghua Lu, Xiaoxiao Wang, Cui Nie, Yujie Tian, Da Chen, Yuan Wang, Xuan Zhou, Qisheng Wang, Feng Yu, Chen Zhang, Changjing Deng, Liang Zhou, Guang-kuo Guan, Ningsheng Shao, Zhiyong Lou, Fei Deng, Hongkai Zhang, Xinwen Chen, Manli Wang, Louis Liu, Zihe Rao, Yu Guo
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1002484

Structural Basis of Transcriptional Gene Silencing Mediated by Arabidopsis MOM1
Cited by: 22
Author(s): Takehiro Nishimura, Guillaume Molinard, Tom J. Petty, Larissa Broger, Caroline Gabus, Thanos D. Halazonetis, Stéphane Thore, Jerzy Paszkowski
Software Mentions: 2
Published: over 14 years ago

10.1107/S1399004714022755

Structural implications of the C-terminal tail in the catalytic and stability properties of manganese peroxidases from ligninolytic fungi
Cited by: 33
Author(s): Elena Fernández‐Fueyo, Sandra Acebes, Francisco J. Ruíz-Dueñas, Marı́a Jesús Martı́nez, Antonio Romero, F.J. Medrano, Vı́ctor Guallar, Ángel T. Martı́nez
Software Mentions: 2
Published: almost 12 years ago

10.1107/S2059798319008933

Prediction of models for ordered solvent in macromolecular structures by a classifier based upon resolution-independent projections of local feature data
Cited by: 0
Author(s): Laurel Jones, Michael Tynes, Paul Smith
Software Mentions: 2
Published: about 7 years ago

10.1107/S1399004715009438

High-resolution crystal structures of the solubilized domain of porcine cytochromeb5
Cited by: 3
Author(s): Yu Hirano, Shigenobu Kimura, Taro Tamada
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pbio.3000277

Structural insights into histone chaperone Chz1-mediated H2A.Z recognition and histone replacement
Cited by: 17
Author(s): Yunyun Wang, Sheng Liu, Lu Sun, Ning Xu, Shan Shan, Fei Wu, Xiaoping Liang, Yingzi Huang, Ed Luk, Carl Wu, Zheng Zhou
Software Mentions: 2
Published: over 7 years ago

10.1107/S0907444910001502

Detection and correction of underassigned rotational symmetry prior to structure deposition
Cited by: 12
Author(s): Billy K. Poon, Ralf W. Grosse‐Kunstleve, Peter H. Zwart, Nicholas K. Sauter
Software Mentions: 2
Published: over 16 years ago

10.1107/S2059798316016910

Strategies for carbohydrate model building, refinement and validation
Cited by: 45
Author(s): Jon Agirre
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pbio.1001776

Segmental Helical Motions and Dynamical Asymmetry Modulate Histidine Kinase Autophosphorylation
Cited by: 97
Author(s): A.E. Mechaly, Nathalie Sassoon, Jean‐Michel Betton, Pedro M. Alzari
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pbio.3001386

Structural characterization of the Plasmodium falciparum lactate transporter PfFNT alone and in complex with antimalarial compound MMV007839 reveals its inhibition mechanism
Cited by: 9
Author(s): Xi Peng, Nan Wang, Angqi Zhu, Hanwen Xu, Jialu Li, Yanxia Zhou, Chen Wang, Qi Xiao, Li Guo, Fei Liu, Zhijun Jia, Huaichuan Duan, Jianping Hu, Weidan Yuan, Jia Geng, Chuangye Yan, Xin Jiang, Dong Deng
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pntd.0005374

Structure of SALO, a leishmaniasis vaccine candidate from the sand fly Lutzomyia longipalpis
Cited by: 10
Author(s): Oluwatoyin A. Asojo, Alan Kelleher, Zhuyun Liu, Jeroen Pollet, Elissa M. Hudspeth, Wanderson Rezende, Mallory Jo Groen, Christopher A. Seid, Maha Abdeladhim, Shannon E. Townsend, Waldionê de Castro, Antonio Ferreira Mendes-Sousa, Daniella Castanheira Bartholomeu, Ricardo Toshio Fujiwara, María Elena Bottazzi, Peter J. Hotez, Bin Zhan, Fabiano Oliveira, Shaden Kamhawi, Jesús G. Valenzuela
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0032070

Recognition of Anesthetic Barbiturates by a Protein Binding Site: A High Resolution Structural Analysis
Cited by: 13
Author(s): Simon Oakley, L.S. Vedula, Weiming Bu, Qing Cheng Meng, Xi Jin, Renyu Liu, Roderic G. Eckenhoff, Patrick J. Loll
Software Mentions: 2
Published: over 14 years ago

10.1007/s11120-017-0450-3

Crystal structure of Psb27 from Arabidopsis thaliana determined at a resolution of 1.85 Å
Cited by: 7
Author(s): Xingxing Cheng, Jiuyang Liu, Huan Zhang, Fudong Li, Zhang Shuya, Min Xu, Ke Ruan, Yuhua Wang, Aigen Fu
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pbio.1000589

Structural Basis of Response Regulator Dephosphorylation by Rap Phosphatases
Cited by: 86
Author(s): Vijay Parashar, Nicolas Mirouze, David Dubnau, Matthew B. Neiditch
Software Mentions: 2
Published: over 15 years ago

10.1107/S1399004715000152

Structure of Csd3 fromHelicobacter pylori, a cell shape-determining metallopeptidase
Cited by: 17
Author(s): Doo Ri An, Hyoun Sook Kim, Jieun Kim, Ha Na Im, Hye Jin Yoon, Ji Young Yoon, Jun Young Jang, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: over 11 years ago

10.3390/v13081495

Crystal Structure of a Retroviral Polyprotein: Prototype Foamy Virus Protease-Reverse Transcriptase (PR-RT)
Cited by: 3
Author(s): Jerry Joe Ebow Kingsley Harrison, Steve Tuske, Kalyan Kumar Das, Francesc Xavier Ruiz, J.D. Bauman, Paul L. Boyer, Jeffrey J. DeStefano, Stephen H. Hughes, Eddy Arnold
Software Mentions: 2
Published: about 5 years ago

10.1107/S1399004714018732

Structural basis for the recognition of muramyltripeptide byHelicobacter pyloriCsd4, a<scp>D</scp>,<scp>L</scp>-carboxypeptidase controlling the helical cell shape
Cited by: 19
Author(s): Hyoun Sook Kim, Jieun Kim, Ha Na Im, Doo Ri An, Mijoon Lee, Dušan Hesek, Shahriar Mobashery, Jin Young Kim, Kun Cho, Hye Jin Yoon, Byung Woo Han, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: almost 12 years ago

10.20411/pai.v4i2.338

Crystal Structure and Immunogenicity of the DS-Cav1-Stabilized Fusion Glycoprotein From Respiratory Syncytial Virus Subtype B
Cited by: 24
Author(s): Michael Joyce, Amy Bao, Man Chen, Ivelin S. Georgiev, Li Ou, Tatsiana Bylund, Aliaksandr Druz, Wing-Pui Kong, Dongjun Peng, E.J. Rundlet, Joseph G. Van Galen, Shuishu Wang, Yongping Yang, Baoshan Zhang, Gwo-Yu Chuang, Jason S. McLellan, Barney S. Graham, John R. Mascola, Peter D. Kwong
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pbio.1002480

The DEAD-box Protein Rok1 Orchestrates 40S and 60S Ribosome Assembly by Promoting the Release of Rrp5 from Pre-40S Ribosomes to Allow for 60S Maturation
Cited by: 39
Author(s): Sohail Khoshnevis, Isabel Askenasy, Matthew C. Johnson, Maria D. Dattolo, Crystal L. Young-Erdos, M. Elizabeth Stroupe, Katrin Karbstein
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798318005764

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation
Cited by: 6
Author(s): Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 2
Published: over 8 years ago

10.1107/S090744491302252X

Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2
Cited by: 53
Author(s): Naoki Horikoshi, Koichi Sato, Keisuke Shimada, Yasuhiro Arimura, Akihisa Osakabe, Hiroaki Tachiwana, Yoko Hayashi‐Takanaka, W. Iwasaki, Wataru Kagawa, Masahiko Harata, Hiroshi Kimurâ, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 13 years ago

10.1107/S205979831801519X

Iron–sulfur clusters have no right angles
Cited by: 15
Author(s): Nigel W. Moriarty, Paul D. Adams
Software Mentions: 2
Published: over 7 years ago

10.3390/v13061101

The Molecular Basis for Escherichia coli O157:H7 Phage FAHEc1 Endolysin Function and Protein Engineering to Increase Thermal Stability
Cited by: 7
Author(s): Michael J. Love, David Coombes, Sarah H. Manners, Gayan S. Abeysekera, Craig Billington, Renwick C. J. Dobson
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798318013347

Improving the accuracy and resolution of neutron crystallographic data by three-dimensional profile fitting of Bragg peaks in reciprocal space
Cited by: 23
Author(s): Brendan Sullivan, Rick Archibald, Patricia S. Langan, Holger Dobbek, Martin Bommer, Robert L. McFeeters, Leighton Coates, Xiaoping Wang, Franz X. Gallmeier, J.M. Carpenter, V. E. Lynch, Paul Langan
Software Mentions: 2
Published: almost 8 years ago

10.1107/S2059798319006831

Structural and functional characterization of CMP-N-acetylneuraminate synthetase fromVibrio cholerae
Cited by: 1
Author(s): Sucharita Bose, Debayan Purkait, Deepthi Joseph, Vinod Nayak, Ramaswamy Subramanian
Software Mentions: 2
Published: over 7 years ago

10.1107/S0907444912040590

Nearest-cell: a fast and easy tool for locating crystal matches in the PDB
Cited by: 13
Author(s): Varun Ramraj, Gwyndaf Evans, Jonathan M. Diprose, Robert Esnouf
Software Mentions: 2
Published: almost 14 years ago

10.1107/S139900471501857X

Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Cited by: 50
Author(s): Takanori Nakane, Changyong Song, Mamoru Suzuki, Eriko Nango, Jun Kobayashi, Tetsuya Masuda, Shiro Inoue, Eiichi Mizohata, Toru Nakatsu, Tomoyuki Tanaka, Rie Tanaka, Tatsuro Shimamura, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, So Iwata, Michihiro Sugahara
Software Mentions: 2
Published: almost 11 years ago

10.3390/v12121346

Structural Basis of Zika Virus Specific Neutralization in Subsequent Flavivirus Infections
Cited by: 7
Author(s): Madhumati Sevvana, Thomas F. Rogers, Andrew Miller, Feng Long, Thomas Klose, Nathan Beutler, Yu-Cheng Lai, Mara Parren, Laura M. Walker, Geeta Buda, Dennis R. Burton, Michael G. Rossmann, Richard Kühn
Software Mentions: 2
Published: almost 6 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287