cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
Cited by: 51
Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: about 6 years ago

10.1038/s41398-018-0258-8

Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression
Cited by: 11
Author(s): Hang Zhou, Zhongshan Cheng, Nick Bass, John H. Krystal, Lindsay A. Farrer, Henry R. Kranzler, Joel Gelernter
Software Mentions: 1
Published: almost 8 years ago

10.1101/2020.06.08.141267

Structural basis of a public antibody response to SARS-CoV-2
Cited by: 18
Author(s): Meng Yuan, Hejun Liu, Nicholas C. Wu, Chang-Chun David Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry J Tien, Thomas F. Rogers, Elise Landais, Devin Sok, Joseph G. Jardine, Dennis R. Burton, Ian A. Wilson
Software Mentions: 1
Published: over 6 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2021.01.26.428356

Sequence signatures of two IGHV3-53/3-66 public clonotypes to SARS-CoV-2 receptor binding domain
Cited by: 3
Author(s): Timothy J.C. Tan, Meng Yuan, Kaylee Kuzelka, Gilberto C Padron, Jacob R. Beal, Xin Chen, Yiquan Wang, Joel Rivera-Cardona, Xueyong Zhu, Beth M. Stadtmueller, Christopher B. Brooke, Ian A. Wilson, Nicholas C. Wu
Software Mentions: 1
Published: over 5 years ago

10.1101/2020.09.18.302901

SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism
Cited by: 34
Author(s): Ming Shi, Long Wang, Pietro Fontana, Setu M. Vora, Ying Zhang, Tian‐Min Fu, Judy Lieberman, Hao Wu
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.09.21.305441

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 4
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00492-16

Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function
Cited by: 30
Author(s): Nam K. Tonthat, Praveen R. Juvvadi, Hengshan Zhang, Soo Chan Lee, Ronald A. Venters, Leonard D. Spicer, William J. Steinbach, Joseph Heitman, Maria A. Schumacher
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.00872-16

Molecular Insights into the Fungus-Specific Serine/Threonine Protein Phosphatase Z1 in Candida albicans
Cited by: 21
Author(s): Emily Chen, M.S. Choy, Katalin Petrényi, Zoltán Kónya, Ferenc Erdődi, Viktor Dombrádi, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: about 10 years ago

10.1128/mBio.01543-16

Emergence of a Potent Multidrug Efflux Pump Variant That Enhances Campylobacter Resistance to Multiple Antibiotics
Cited by: 81
Author(s): Hong Yao, Zhangqi Shen, Yang Wang, Fengru Deng, Dejun Liu, Gaowa Naren, Lei Dai, Chih‐Chia Su, Bing Wang, Shaolin Wang, Congming Wu, Edward Yu, Qijing Zhang, Jianzhong Shen
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
Cited by: 21
Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: about 9 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
Cited by: 17
Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
Cited by: 38
Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
Cited by: 19
Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
Cited by: 26
Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01497-19

Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO 2 Capture by a Surface-Exposed [Fe 4 S 4 ] Cluster
Cited by: 10
Author(s): Lee A. Rettberg, Wonchull Kang, Martin T. Stiebritz, Caleb J. Hiller, Chi Chung Lee, Jasper Liedtke, Markus W. Ribbe, Yilin Hu
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00280-20

The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site
Cited by: 34
Author(s): Jérémie Prévost, W.D. Tolbert, Halima Medjahed, Rebekah Sherburn, Navid Madani, Daria Zoubchenok, Gabrielle Gendron‐Lepage, Althea Gaffney, Melissa C. Grenier, Sharon Kirk, Natasha Gupta Vergara, Changze Han, Brendan T. Mann, Agnès Laurence Chenine, Adel Ahmed Rashad Ahmed, Irwin M. Chaiken, Frank Kirchhoff, Beatrice H. Hahn, Hillel Haim, Cameron F. Abrams, Amos B. Smith, Joseph Sodroski, Marzena Pazgier, Andrés Finzi
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.01303-20

Structure and Multitasking of the c-di-GMP-Sensing Cellulose Secretion Regulator BcsE
Cited by: 12
Author(s): Samira Zouhir, W. Abidi, M. Caleechurn, Petya V. Krasteva
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01488-20

Structural Characterization of the Essential Cell Division Protein FtsE and Its Interaction with FtsX in Streptococcus pneumoniae
Cited by: 10
Author(s): Martín Alcorlo, Daniel Straume, Joe Lutkenhaus, Leiv Sigve Håvarstein, J.A. Hermoso
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02012-20

Molecular Deceleration Regulates Toxicant Release to Prevent Cell Damage in Pseudomonas putida S16 (DSM 28022)
Cited by: 4
Author(s): Hongzhi Tang, Kunzhi Zhang, Haiyang Hu, Geng Wu, Weiwei Wang, Xiongyu Zhu, Gongquan Liu, Ping Xu
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02772-20

Structure of the Receptor Binding Domain of EnvP(b)1, an Endogenous Retroviral Envelope Protein Expressed in Human Tissues
Cited by: 5
Author(s): K. McCarthy, Joseph L. Timpona, Simon Jenni, Louis-Marie Bloyet, Vesna Brusic, Welkin E. Johnson, Sean P. J. Whelan, Lindsey R. Robinson-McCarthy
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.02924-20

Atomic Structure of the Trichomonas vaginalis Double-Stranded RNA Virus 2
Cited by: 4
Author(s): Alexander Stevens, Katherine A. Muratore, Yanxiang Cui, Patricia J. Johnson, Zhou Zh
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.03199-20

Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring
Cited by: 19
Author(s): Norihiro Takekawa, Akihiro Kawamoto, Mayuko Sakuma, Takayuki Kato, Seiji Kojima, Miki Kinoshita, Tetsuo Minamino, Keiichi Namba, Michio Homma, Katsumi Imada
Software Mentions: 1
Published: over 5 years ago

10.1093/hmg/ddv007

Crystal structure of human persulfide dioxygenase: structural basis of ethylmalonic encephalopathy
Cited by: 44
Author(s): Ilaria Pettinati, Jürgen Brem, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: over 11 years ago

10.1107/S2052252517002433

Crystallographic and SAXS studies ofS-adenosyl-<scp>L</scp>-homocysteine hydrolase fromBradyrhizobium elkanii
Cited by: 10
Author(s): Tomasz Manszewski, Kamil Szpotkowski, Mariusz Jaskólski
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252516010514

Neutron structure of human carbonic anhydrase II in complex with methazolamide: mapping the solvent and hydrogen-bonding patterns of an effective clinical drug
Cited by: 25
Author(s): Mayank Aggarwal, Andrey Kovalevsky, Hector A. Velazquez, S.Z. Fisher, Jeremy C. Smith, Robert McKenna
Software Mentions: 1
Published: about 10 years ago

10.1107/S205225251701750X

Crystal structure of peroxiredoxin 3 from Vibrio vulnificus and its implications for scavenging peroxides and nitric oxide
Cited by: 6
Author(s): Jinsook Ahn, Kyung Ku Jang, Inseong Jo, Nurhasni Hasan, Jong Gyu Lim, Jin‐Wook Yoo, Sang Ho Choi, Nam‐Chul Ha
Software Mentions: 1
Published: over 8 years ago

10.1107/S2052252516016304

A multicrystal diffraction data-collection approach for studying structural dynamics with millisecond temporal resolution
Cited by: 17
Author(s): Robin Schubert, Svetlana Kapis, Yannig Gicquel, Gleb Bourenkov, Thomas R. Schneider, Michaël Heymann, Christian Betzel, Markus Perbandt
Software Mentions: 1
Published: almost 10 years ago

10.1107/S2052252515008337

Native SAD is maturing
Cited by: 48
Author(s): John P. Rose, Bi-Cheng Wang, M.S. Weiss
Software Mentions: 1
Published: over 11 years ago

10.1107/S2052252519001878

Ice formation and solvent nanoconfinement in protein crystals
Cited by: 9
Author(s): David Moreau, Hakan Atakişi, Robert Thorne
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252520006065

Assessing the JEOL CRYO ARM 300 for high-throughput automated single-particle cryo-EM in a multiuser environment
Cited by: 12
Author(s): Marcus Fislage, Alexander V. Shkumatov, Annelore Stroobants, Rouslan G. Efremov
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252514012585

Structure and function study of the complex that synthesizesS-adenosylmethionine
Cited by: 35
Author(s): Ben Murray, S.V. Antonyuk, A. Marina, Sebastiaan van Liempd, Shelly C. Lu, José M. Mato, S.S. Hasnain, Adriana L. Rojas
Software Mentions: 1
Published: over 12 years ago

10.1107/S2052252520004030

Atomic structures determined from digitally defined nanocrystalline regions
Cited by: 8
Author(s): Marcus Gallagher-Jones, Karen C. Bustillo, Colin Ophus, Logan S. Richards, Jim Ciston, Sang-Ho Lee, Andrew M. Minor, José A. Rodríguez
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252519001453

Fixed-target serial oscillation crystallography at room temperature
Cited by: 24
Author(s): Jennifer L. Wierman, Olivier Paré-Labrosse, Antoine Sarracini, Jessica E. Besaw, Michael J. Cook, Saeed Oghbaey, Hazem Daoud, P. Mehrabi, I.A. Kriksunov, Anling Kuo, David Schüller, Scott Smith, Oliver P. Ernst, Doletha M. E. Szebenyi, Sol M. Grüner, R. J. D. Miller, Aaron D. Finke
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252514021113

Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein
Cited by: 26
Author(s): Melina Haupt, Matthew P. Blakeley, S.J. Fisher, Sax A. Mason, J.B. Cooper, Edward P. Mitchell, V. Trevor Forsyth
Software Mentions: 1
Published: almost 12 years ago

10.1107/S2052252520006855

1.8 Å resolution structure of β-galactosidase with a 200 kV CRYO ARM electron microscope
Cited by: 25
Author(s): Alan Merk, Takuma Fukumura, Xing Zhu, Joseph E. Darling, Reinhard Grisshammer, Jana Ognjenović, Sriram Subramaniam
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252520010374

Anaerobic fixed-target serial crystallography
Cited by: 10
Author(s): Patrick Rabe, John Beale, A. Butryn, Pierre Aller, A.S. Dirr, Pauline A. Lang, Danny Axford, S.B. Carr, T.M. Leissing, M.A. McDonough, Bradley Davy, Ali Ebrahim, Julien Orlans, Selina L. S. Storm, Allen M. Orville, Christopher J. Schofield, R.L. Owen
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252519011655

High-throughput structures of protein–ligand complexes at room temperature using serial femtosecond crystallography
Cited by: 33
Author(s): T. Moreno-Chicano, Ali Ebrahim, Danny Axford, M.V. Appleby, John Beale, Amanda K. Chaplin, Duyvesteyn Hme., Reza A. Ghiladi, Shigeki Owada, D.A. Sherrell, R.W. Strange, Hiroshi Sugimoto, Kensuke Tono, J.A.R. Worrall, Robin L. Owen, Hough
Software Mentions: 1
Published: almost 7 years ago

10.1107/S2052252519008285

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography
Cited by: 24
Author(s): T.P. Halsted, Keitaro Yamashita, Chai Gopalasingam, Rajesh T. Shenoy, Kunio Hirata, Hideo Ago, Go Ueno, Matthew P. Blakeley, Robert R. Eady, S.V. Antonyuk, Masaki Yamamoto, S.S. Hasnain
Software Mentions: 1
Published: over 7 years ago

10.1107/S205225251601664X

Fifteen years of the Protein Crystallography Station: the coming of age of macromolecular neutron crystallography
Cited by: 24
Author(s): Julian C.-H. Chen, Clifford J. Ünkefer
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252519014507

Recent trends in crystallography – a current IUCr journals perspective
Cited by: 0
Author(s): Andrew J. Allen
Software Mentions: 1
Published: almost 7 years ago

10.1107/S2052252514004096

Structural insight into activity enhancement and inhibition of H64A carbonic anhydrase II by imidazoles
Cited by: 30
Author(s): Mayank Aggarwal, Bhargav Kondeti, Chingkuang Tu, C. Mark Maupin, David N. Silverman, Robert McKenna
Software Mentions: 1
Published: over 12 years ago

10.1107/S2052252516014147

Lytic polysaccharide monooxygenases: a crystallographer's view on a new class of biomass-degrading enzymes
Cited by: 77
Author(s): Kristian E. H. Frandsen, Leila Lo Leggio
Software Mentions: 1
Published: almost 10 years ago

10.1107/S205225251900914X

1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector
Cited by: 28
Author(s): A. Tolstikova, Matteo Levantino, Oleksandr Yefanov, V. Hennicke, P. Fischer, Jan Meyer, A. Mozzanica, S. Redford, Eva Crosas, Nadia Opara, Miriam Barthelmeß, J. Lieske, D. Oberthüer, E. Wator, István Mohácsi, Michaël Wulff, B. Schmitt, Henry N. Chapman, A. Meents
Software Mentions: 1
Published: about 7 years ago

10.1107/S2052252518007637

Chlamydia protein Pgp3 studied at high resolution in a new crystal form
Cited by: 3
Author(s): Sarfraz Khurshid, Lata Govada, Gillian Wills, Myra O. McClure, John R. Helliwell, Naomi E. Chayen
Software Mentions: 1
Published: over 8 years ago

10.1107/S2052252519005955

Conservation of the structure and function of bacterial tryptophan synthases
Cited by: 10
Author(s): K. Michalska, Jennifer Gale, G. Joachimiak, Changsoo Chang, C. Hatzos-Skintges, B. Nocek, Stephen Johnston, L. Bigelow, Besnik Bajrami, R. Jedrzejczak, Samantha Wellington, Deborah T. Hung, Partha P. Nag, Stewart L. Fisher, M. Endres, Andrzej Joachimiak
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252518005237

Ionic scattering factors of atoms that compose biological molecules
Cited by: 28
Author(s): Koji Yonekura, Ryota Matsuoka, Yoshiki Yamashita, Tsutomu Yamane, Mitsunori Ikeguchi, Akinori Kidera, Saori Maki-Yonekura
Software Mentions: 1
Published: over 8 years ago

10.1107/S205225251302695X

Structural insights into WcbI, a novel polysaccharide-biosynthesis enzyme
Cited by: 6
Author(s): Mirella Vivoli, E. Ayres, Edward Beaumont, Michail N. Isupov, Nicholas J. Harmer
Software Mentions: 1
Published: almost 13 years ago

10.1107/S2052252518001124

Intermolecular correlations are necessary to explain diffuse scattering from protein crystals
Cited by: 22
Author(s): Ariana Peck, Frédéric Poitevin, Thomas J Lane
Software Mentions: 1
Published: over 8 years ago

10.1107/S2052252516016675

Mutation of Tyr137 of the universalEscherichia colifimbrial adhesin FimH relaxes the tyrosine gate prior to mannose binding
Cited by: 18
Author(s): Said Rabbani, Eva‐Maria Krammer, Goedele Roos, Adam Zalewski, Roland R. Preston, Sameh Eid, Pascal Zihlmann, Martine Prévost, Marc F. Lensink, Andrew Thompson, Beat Ernst, Julie Bouckaert
Software Mentions: 1
Published: over 9 years ago

10.1107/S2052252519006651

Formation of a highly dense tetra-rhenium cluster in a protein crystal and its implications in medical imaging
Cited by: 11
Author(s): Alice Brink, John R. Helliwell
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252519003956

Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins
Cited by: 63
Author(s): Ali Ebrahim, T. Moreno-Chicano, M.V. Appleby, Amanda K. Chaplin, John Beale, D.A. Sherrell, Duyvesteyn Hme., Shigeki Owada, Kensuke Tono, Hiroshi Sugimoto, R.W. Strange, J.A.R. Worrall, Danny Axford, R.L. Owen, Hough
Software Mentions: 1
Published: over 7 years ago

10.1107/S2052252515024161

High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP–oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution
Cited by: 30
Author(s): Eduardo Howard, B. Guillot, Matthew P. Blakeley, Michael Haertlein, Martine Moulin, A. Mitschler, A. Cousido-Siah, Firas Fadel, Wanda M. Valsecchi, Takashi Tanaka, T. Petrova, Julien Claudot, A. Podjarny
Software Mentions: 1
Published: over 10 years ago

10.1107/S2052252519011692

DeepRes: a new deep-learning- and aspect-based local resolution method for electron-microscopy maps
Cited by: 43
Author(s): Erney Ramírez-Aportela, Javier Mota, Pablo Conesa, José Marı́a Carazo, C.O.S. Sorzano
Software Mentions: 1
Published: about 7 years ago

10.7150/ijbs.57673

Crystal structure of the MyRF ICA domain with its upstream β-helical stalk reveals the molecular mechanisms underlying its trimerization and self-cleavage
Cited by: 2
Author(s): Pei Wu, Xiangkai Zhen, Bowen Li, Yu Qian, Xiaochen Huang, Ning Shi
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.39919

Crystal Structures of Human C4.4A Reveal the Unique Association of Ly6/uPAR/α-neurotoxin Domain
Cited by: 3
Author(s): Yunbin Jiang, Lin Lin, Shanli Chen, Longguang Jiang, Mette C. Kriegbaum, Henrik Gårdsvoll, Lulu Anne Hansen, Jinyu Li, Michael Ploug, Cai Yuan, Mingdong Huang
Software Mentions: 1
Published: over 6 years ago

10.1084/jem.20191957

Metabolic bifunctionality of Rv0812 couples folate and peptidoglycan biosynthesis in Mycobacterium tuberculosis
Cited by: 4
Author(s): Katherine A. Black, Lei Duan, Lungelo Mandyoli, Bruna Pelegrim Selbach, Weizhen Xu, Sabine Ehrt, James C. Sacchettini, Kyu Y. Rhee
Software Mentions: 1
Published: over 5 years ago

10.1186/s13045-021-01032-2

Recurrent XPO1 mutations alter pathogenesis of chronic lymphocytic leukemia
Cited by: 25
Author(s): J. T. Walker, Zachary A. Hing, Bonnie K. Harrington, J.M. Baumhardt, Hatice Gülçin Özer, Amy Lehman, Brian Giacopelli, Larry Beaver, Katie Williams, Jordan Skinner, Casey B. Cempre, Qingxiang Sun, Sharon Shacham, Benjamin R. Stromberg, Matthew K. Summers, Lynne V. Abruzzo, Laura Z. Rassenti, Thomas J. Kipps, Sameer A. Parikh, Neil E. Kay, Kerry A. Rogers, Jennifer A. Woyach, Vincenzo Coppola, Yuh Min Chook, Christopher C. Oakes, John C. Byrd, Rosa Lapalombella
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ijpddr.2016.02.001

The Ascaris suum nicotinic receptor, ACR-16, as a drug target: Four novel negative allosteric modulators from virtual screening
Cited by: 15
Author(s): Fudan Zheng, Alan P. Robertson, Melanie Abongwa, Edward Yu, R. J. Martin
Software Mentions: 1
Published: over 10 years ago

10.4049/jimmunol.1303142

Mutational and Structural Analysis of KIR3DL1 Reveals a Lineage-Defining Allotypic Dimorphism That Impacts Both HLA and Peptide Sensitivity
Cited by: 46
Author(s): Geraldine M. O’Connor, J.P. Vivian, Jacqueline M.L. Widjaja, John S. Bridgeman, Emma Gostick, Bernard A. P. Lafont, Stephen Anderson, David A. Price, Andrëw G. Brööks, Jamie Rossjohn, Daniel W. McVicar
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jinorgbio.2016.07.013

Use of ferrous iron by metallo-β-lactamases
Cited by: 20
Author(s): Samuel T. Cahill, Hanna Tarhonskaya, Anna M. Rydzik, Emily Flashman, M.A. McDonough, Christopher J. Schofield, Jürgen Brem
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.jinorgbio.2018.08.002

Structural and catalytic properties of the peroxygenase P450 enzyme CYP152K6 from Bacillus methanolicus
Cited by: 14
Author(s): Hazel M. Girvan, Harshwardhan Poddar, Kirsty J. McLean, David R. Nelson, Katherine A. Hollywood, Colin Levy, D. Leys, Andrew W. Munro
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.jlr.2021.100054

Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands
Cited by: 6
Author(s): J.A. Silvaroli, Jacqueline Plau, Charlie H. Adams, Surajit Banerjee, Made Airanthi K. Widjaja‐Adhi, William S. Blaner, Marcin Golczak
Software Mentions: 1
Published: over 5 years ago

10.1021/acs.jmedchem.0c00373

Shedding X-ray Light on the Role of Magnesium in the Activity of Mycobacterium tuberculosis Salicylate Synthase (MbtI) for Drug Design
Cited by: 18
Author(s): Matteo Mori, Giovanni Stelitano, Arianna Gelain, Elena Pini, Laurent R. Chiarelli, Josè Camilla Sammartino, Giulio Poli, Tiziano Tuccinardi, Giangiacomo Beretta, Alessio Porta, M. Bellinzoni, Stefania Villa, Fiorella Meneghetti
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jmb.2010.11.039

Structural Basis for Langerin Recognition of Diverse Pathogen and Mammalian Glycans through a Single Binding Site
Cited by: 101
Author(s): H. Feinberg, Maureen E. Taylor, Nahid Razi, Ryan McBride, Yuriy A. Knirel, Sarah A. Graham, Kurt Drickamer, William I. Weis
Software Mentions: 1
Published: over 15 years ago

10.1016/j.jmb.2011.01.029

Structure of Rhomboid Protease in a Lipid Environment
Cited by: 81
Author(s): Kutti R. Vinothkumar
Software Mentions: 1
Published: over 15 years ago

10.1016/j.jmb.2017.08.010

Structures of Leishmania Fructose-1,6-Bisphosphatase Reveal Species-Specific Differences in the Mechanism of Allosteric Inhibition
Cited by: 9
Author(s): Meng Yuan, Montserrat G. Vásquez-Valdivieso, I.W. McNae, Paul A.M. Michels, Linda A. Fothergill‐Gilmore, Malcolm D. Walkinshaw
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.jmb.2007.09.055

Predicting Protein Function from Structure—The Roles of Short-chain Dehydrogenase/Reductase Enzymes in Bordetella O-antigen Biosynthesis
Cited by: 19
Author(s): Jerry D. King, Nicholas J. Harmer, Andrew Preston, Colin M. Palmer, Martin Rejzek, Robert A. Field, Tom L. Blundell, Duncan J. Maskell
Software Mentions: 1
Published: almost 19 years ago

10.1016/j.jmb.2017.08.007

Studies on the Interaction of the Histone Demethylase KDM5B with Tricarboxylic Acid Cycle Intermediates
Cited by: 26
Author(s): Hanna Tarhonskaya, Radosław P. Nowak, C. Johansson, A. Szykowska, Anthony Tumber, Rebecca L. Hancock, Pauline A. Lang, Emily Flashman, U. Oppermann, Christopher J. Schofield, Akane Kawamura
Software Mentions: 1
Published: about 9 years ago

10.1016/j.jmb.2008.09.085

Repetitive Architecture of the Haemophilus influenzae Hia Trimeric Autotransporter
Cited by: 52
Author(s): Guoyu Meng, Joseph W. St. Geme, Gabriel Waksman
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.jmb.2017.11.016

The Y. bercovieri Anbu crystal structure sheds light on the evolution of highly (pseudo)symmetric multimers
Cited by: 4
Author(s): Anna Piasecka, H. Czapinska, Marie‐Theres Vielberg, Roman H. Szczepanowski, R. Kiefersauer, Simon H. Reed, M. Groll, Matthias Bochtler
Software Mentions: 1
Published: over 8 years ago

10.1016/j.jmb.2011.10.036

Structure of the Glycosyltransferase EryCIII in Complex with its Activating P450 Homologue EryCII
Cited by: 30
Author(s): Martin C. Moncrieffe, M. J. Fernàndez, Dieter Spiteller, Hideki Matsumura, Ben F. Luisi, Peter F. Leadlay
Software Mentions: 1
Published: over 14 years ago

10.1016/j.jmb.2010.02.026

Structural and Biochemical Bases for the Redox Sensitivity of Mycobacterium tuberculosis RslA
Cited by: 42
Author(s): Krishan Gopal Thakur, T. Praveena, B. Gopal
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2015.12.018

Pi Release Limits the Intrinsic and RNA-Stimulated ATPase Cycles of DEAD-Box Protein 5 (Dbp5)
Cited by: 14
Author(s): Emily V. Wong, Wenxiang Cao, Judit Vörös, Monique Merchant, Yorgo Modis, David D. Hackney, Ben Montpetit, Enrique M. De La Cruz
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.55966

A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment
Cited by: 31
Author(s): Xinru Wang, Dimitriya H Garvanska, Isha Nasa, Yumi Ueki, Gang Zhang, Arminja N. Kettenbach, Wolfgang Peti, Jakob Nilsson, Rebecca Page
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.21465

Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense
Cited by: 55
Author(s): Annette Fischer, Kelly S. Harrison, Y. Ramirez, Daniela Auer, Suvagata Roy Chowdhury, Bhupesh K. Prusty, Florian Sauer, Zoe Dimond, Caroline Kisker, P. Scott Hefty, Thomas Rudel
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.61496

Structural basis of ClpXP recognition and unfolding of ssrA-tagged substrates
Cited by: 34
Author(s): Fu‐Shan Xue, Tristan A Bell, Sarah R. Barkow, T.A. Baker, Robert T. Sauer
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.53530

New approach for membrane protein reconstitution into peptidiscs and basis for their adaptability to different proteins
Cited by: 44
Author(s): Gabriella Angiulli, Harveer Singh Dhupar, Hiroshi Suzuki, Irvinder Singh Wason, Franck Duong, Thomas Walz
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.02391

Re-examining how complexin inhibits neurotransmitter release
Cited by: 65
Author(s): Thorsten Trimbuch, Junjie Xu, David K. Flaherty, Diana R. Tomchick, Josep Rizo, Christian Rosenmund
Software Mentions: 1
Published: over 12 years ago

Projects: cran: PHENIX

Science Score: 75/100

Penalties:

Papers Mentioning PHENIX 2,287