cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0025226

Structural Basis of Cooperativity in Human UDP-Glucose Dehydrogenase
Cited by: 12
Author(s): V. Rajakannan, Hui Sun Lee, Seon Ha Chong, Han Bong Ryu, Ji Young Bae, Eun Young Whang, Jae-Wan Huh, Sung Woo Cho, Lin Woo Kang, Han Choe, Robert Robinson
Software Mentions: 1
Published: almost 15 years ago

10.1016/j.jsb.2016.06.018

Structural and calorimetric studies demonstrate that the hepatocyte nuclear factor 1β (HNF1β) transcription factor is imported into the nucleus via a monopartite NLS sequence
Cited by: 4
Author(s): Mareike M. Wiedmann, Shintaro Aibara, David R. Spring, Murray Stewart, James D. Brenton
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0148909

Computing Molecular Devices in L.major through Transcriptome Analysis: Structured Simulation Approach
Cited by: 1
Author(s): Pruthvi Raj Bejugam, Shailza Singh
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-21476-w

6-Thioguanine is a noncompetitive and slow binding inhibitor of human deubiquitinating protease USP2
Cited by: 40
Author(s): Shang-Ju Chuang, Sha-Yen Cheng, Hui-Chi Tang, Chee‐Ching Sun, Chi-Yuan Chou
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-21955-0

Understanding the Structure, Multimerization, Subcellular Localization and mC Selectivity of a Genomic Mutator and Anti-HIV Factor APOBEC3H
Cited by: 36
Author(s): Fumiaki Ito, Hanjing Yang, Xiao Xiao, Shuxing Li, Aaron Wolfe, Brett Zirkle, В. М. Арутюнян, Xiaojiang S. Chen
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0052890

Crystal Structure of Proteus mirabilis Lipase, a Novel Lipase from the Proteus/Psychrophilic Subfamily of Lipase Family I.1
Cited by: 22
Author(s): Tyler P. Korman, James U. Bowie
Software Mentions: 1
Published: over 13 years ago

10.3390/ijms18071464

Structural Elements Recognized by Abacavir-Induced T Cells
Cited by: 19
Author(s): Daniel Yerly, Y.A. Pompeu, Ryan J. Schutte, Klara Kristin Eriksson, Anette Strhyn, A.W. Bracey, Søren Buus, David A. Ostrov
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms19092796

CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex
Cited by: 9
Author(s): Yu‐Wen Chen, Roshan Satange, Pei-Ching Wu, Cyong-Ru Jhan, Chung-ke Chang, Kuang‐Ren Chung, Michael J. Waring, Sheng-Wei Lin, Li-Ching Hsieh, Ming-Hon Hou
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0142107

Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
Cited by: 6
Author(s): Huaidong Zhang, Guimin Zhang, Chaoxiang Yao, Muhammad Junaid, Zhenghui Lu, Houjin Zhang, Yanhe Ma
Software Mentions: 1
Published: almost 11 years ago

10.1107/S0909049513022760

Crystal structure of the N-terminal domain of MinC dimerizedviadomain swapping
Cited by: 2
Author(s): Jin Yong An, Tae Kyun Kim, Kyoung Ryoung Park, Jung‐Kyu Lee, Hyung‐Seop Youn, Youngjin Lee, Jung Youn Kang, Gil Bu Kang, Soo Hyun Eom
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms20133247

Crystal Structure of Phosphoserine BlaC from Mycobacterium tuberculosis Inactivated by Bis(Benzoyl) Phosphate
Cited by: 1
Author(s): Timothy W. Moural, Dawanna S. White, Cindy J. Choy, ChulHee Kang, Clifford E. Berkman
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-25237-7

Structures of Angptl3 and Angptl4, modulators of triglyceride levels and coronary artery disease
Cited by: 33
Author(s): Ekaterina Biterova, Mariam Esmaeeli, Heli I. Alanen, Mirva J. Saaranen, Lloyd W. Ruddock
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25231-z

Inherent flexibility of CLIC6 revealed by crystallographic and solution studies
Cited by: 15
Author(s): Alisa Ferofontov, Roi Strulovich, Milit Marom, Moshe Giladi, Yoni Haitin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25487-5

Patient-derived mutations within the N-terminal domains of p85α impact PTEN or Rab5 binding and regulation
Cited by: 12
Author(s): Paul Mellor, Jeremy Marshall, Xuan Ruan, Dielle E. Whitecross, Rebecca Ross, Margaret A. Knowles, Stanley A. Moore, Deborah H. Anderson
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-25157-6

Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators
Cited by: 13
Author(s): Sabina Sarvan, François Charih, Momen Askoura, James Butcher, J.S. Brunzelle, Alain Stintzi, Jean Couture
Software Mentions: 1
Published: over 8 years ago

10.1016/j.str.2011.11.001

Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824
Cited by: 77
Author(s): Susan E. Cellitti, Jennifer Shaffer, David H. Jones, Tathagata Mukherjee, Meera Gurumurthy, Badry Bursulaya, Helena I. Boshoff, Inhee Choi, Amit Nayyar, Yong Sok Lee, Joseph Cherian, Pornwaratt Niyomrattanakit, Thomas Dick, Ujjini H. Manjunatha, Clifton E. Barry, Glen Spraggon, Bernhard H. Geierstanger
Software Mentions: 1
Published: over 14 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 11 years ago

10.1016/j.str.2015.05.002

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2
Cited by: 20
Author(s): Lyudmila Dimitrova, Eugene Valkov, Shintaro Aibara, Dirk Flemming, Stephen H. McLaughlin, Ed Hurt, Murray Stewart
Software Mentions: 1
Published: about 11 years ago

10.3390/ijms20174245

Structural Insights into the Interaction of Cytochrome P450 3A4 with Suicide Substrates: Mibefradil, Azamulin and 6′,7′-Dihydroxybergamottin
Cited by: 16
Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20174301

Active Site Architecture and Reaction Mechanism Determination of Cold Adapted β-d-galactosidase from Arthrobacter sp. 32cB
Cited by: 11
Author(s): Maria Rutkiewicz, A. Bujacz, Marta Wanarska, Anna Wierzbicka-Woś, Hubert Cieśliński
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.jsb.2021.107752

Crystal structure of the anti-CRISPR repressor Aca2
Cited by: 6
Author(s): B. F. Usher, Nils Birkholz, Izaak N Beck, Robert D. Fagerlund, Simon A. Jackson, Peter C. Fineran, Tim R. Blower
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.str.2015.12.015

Family-wide Structural Analysis of Human Numb-Associated Protein Kinases
Cited by: 113
Author(s): F.J. Sorrell, M. Szklarz, K.R. Abdul Azeez, J.M. Elkins, Stefan Knapp
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0131788

Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington’s Disease (HD) and Spinocerebellar Ataxias (SCAs)
Cited by: 25
Author(s): Arpita Tawani, Amit Kumar
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0063010

The Carboxy-Terminal αN Helix of the Archaeal XerA Tyrosine Recombinase Is a Molecular Switch to Control Site-Specific Recombination
Cited by: 22
Author(s): Marie-Claude Serre, Toufic El Arnaout, Mark A. Brooks, Dominique Durand, Johnny Lisboa, Noureddine Lazar, Bertrand Raynal, Herman van Tilbeurgh, Sophie Quevillon‐Chéruel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0039985

A Common Ca2+-Driven Interdomain Module Governs Eukaryotic NCX Regulation
Cited by: 35
Author(s): Moshe Giladi, Yehezkel Sasson, Xianyang Fang, Reuben Hiller, Tal Buki, Yun‐Xing Wang, Joel A. Hirsch, Daniel Khananshvili
Software Mentions: 1
Published: about 14 years ago

10.1016/j.str.2018.03.014

Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1
Cited by: 30
Author(s): Deg Briggs, Erhard Hohenester
Software Mentions: 1
Published: about 8 years ago

10.1016/j.str.2018.07.011

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3
Cited by: 43
Author(s): J.J.B. Cockburn, Sophie J. Hesketh, Peter O. Mulhair, Maren Thomsen, Mary J. O’Connell, Michael Way
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.jsb.2016.07.007

The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region
Cited by: 3
Author(s): Shintaro Aibara, Xiao Chen Bai, Murray Stewart
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.str.2019.06.008

Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation
Cited by: 4
Author(s): Mads Gabrielsen, Lori Buetow, Dominika Kowalczyk, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.str.2019.09.010

Combining Transient Expression and Cryo-EM to Obtain High-Resolution Structures of Luteovirid Particles
Cited by: 22
Author(s): Matthew J. Byrne, John F. C. Steele, Emma L. Hesketh, Miriam Walden, Rebecca Thompson, George P. Lomonossoff, Neil A. Ranson
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21010308

In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices
Cited by: 1
Author(s): Yichen Zhang, Shu Wang, Zongchao Jia
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21010280

GTP Preference of d-Glycero-α-d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis
Cited by: 6
Author(s): Suwon Kim, Mi Sun Kim, Seri Jo, Dongkun Shin
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21030915

Phenylthiourea Binding to Human Tyrosinase-Related Protein 1
Cited by: 11
Author(s): Xuelei Lai, Harry J. Wichers, Montserrat Soler-López, Bauke W. Dijkstra
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
Cited by: 51
Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21051689

N-terminal Backbone Pairing Shifts in CCL5-12AAA14 Dimer Interface: Structural Significance of the FAY Sequence
Cited by: 1
Author(s): Jin-Ye Li, Yi‐Chen Chen, Yi-Zong Lee, Chun‐Hsiang Huang, Shih‐Che Sue
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0044934

Mechanistic Insights into Validoxylamine A 7'-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex
Cited by: 18
Author(s): Michael C. Cavalier, Young Sun Yim, Shumpei Asamizu, David Neau, Khaled H. Almabruk, Taifo Mahmud, Yong-Hwan Lee
Software Mentions: 1
Published: almost 14 years ago

10.1107/S0909049513020700

X-ray structure determination and deuteration of nattokinase
Cited by: 12
Author(s): Yasuhide Yanagisawa, Toshiyuki Chatake, Sawa Naito, Tadanori Ohsugi, Chieko Yatagai, Hiroyuki Sumi, Akio Kawaguchi, Kaori Chiba-Kamosida, Megumi Ogawa, Tatsumi Adachi, Yukio Morimoto
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0112873

Crystal Structure of Escherichia coli-Expressed Haloarcula marismortui Bacteriorhodopsin I in the Trimeric Form
Cited by: 14
Author(s): Vitaly Shevchenko, Ivan Gushchin, Vitaly Polovinkin, Ekaterina Round, Valentin Borshchevskiy, P. Utrobin, А. Н. Попов, Taras Balandin, Georg Büldt, Valentin Gordeliy
Software Mentions: 1
Published: over 11 years ago

10.1016/j.yjsbx.2021.100044

Structural basis of enzyme activity regulation by the propeptide of l-lysine α-oxidase precursor from Trichoderma viride
Cited by: 2
Author(s): Masaki Kawamura, Norihisa Ito, Yuya Matsumoto, Masaya Saito, Takashi Tamura, Hitoshi Kusakabe, Kenji Inagaki, Katsumi Imada
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21113940

The Structural Basis of the Binding of Various Aminopolycarboxylates by the Periplasmic EDTA-Binding Protein EppA from Chelativorans sp. BNC1
Cited by: 3
Author(s): K.M. Lewis, C.L. Greene, S.A. Sattler, BuHyun Youn, Luying Xun, ChulHee Kang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0065080

Mycobacterium tuberculosis Rv3406 Is a Type II Alkyl Sulfatase Capable of Sulfate Scavenging
Cited by: 17
Author(s): Kimberly M. Sogi, Zev J. Gartner, Mark A. Breidenbach, Mason J. Appel, Michael W. Schelle, Carolyn R. Bertozzi
Software Mentions: 1
Published: about 13 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: about 6 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: almost 6 years ago

10.1128/JVI.01357-16

Structure of an N276-Dependent HIV-1 Neutralizing Antibody Targeting a Rare V5 Glycan Hole Adjacent to the CD4 Binding Site
Cited by: 24
Author(s): Constantinos Kurt Wibmer, Jason Gorman, Colin Anthony, Nonhlanhla N. Mkhize, Aliaksandr Druz, Talita York, Stephen D. Schmidt, Jan Phillipus Lourens Labuschagne, Mark K. Louder, Robert T. Bailer, Salim Safurdeen. Abdool Karim, John R. Mascola, Carolyn Williamson, Penny L. Moore, Peter D. Kwong, Lynn Morris
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41398-018-0258-8

Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression
Cited by: 11
Author(s): Hang Zhou, Zhongshan Cheng, Nick Bass, John H. Krystal, Lindsay A. Farrer, Henry R. Kranzler, Joel Gelernter
Software Mentions: 1
Published: almost 8 years ago

10.1101/2020.06.08.141267

Structural basis of a public antibody response to SARS-CoV-2
Cited by: 18
Author(s): Meng Yuan, Hejun Liu, Nicholas C. Wu, Chang-Chun David Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry J Tien, Thomas F. Rogers, Elise Landais, Devin Sok, Joseph G. Jardine, Dennis R. Burton, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2021.01.26.428356

Sequence signatures of two IGHV3-53/3-66 public clonotypes to SARS-CoV-2 receptor binding domain
Cited by: 3
Author(s): Timothy J.C. Tan, Meng Yuan, Kaylee Kuzelka, Gilberto C Padron, Jacob R. Beal, Xin Chen, Yiquan Wang, Joel Rivera-Cardona, Xueyong Zhu, Beth M. Stadtmueller, Christopher B. Brooke, Ian A. Wilson, Nicholas C. Wu
Software Mentions: 1
Published: over 5 years ago

10.1101/2020.09.18.302901

SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism
Cited by: 34
Author(s): Ming Shi, Long Wang, Pietro Fontana, Setu M. Vora, Ying Zhang, Tian‐Min Fu, Judy Lieberman, Hao Wu
Software Mentions: 1
Published: almost 6 years ago

10.1101/2020.09.21.305441

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 4
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.cell.2017.04.010

Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation
Cited by: 51
Author(s): Aravindan Ilangovan, Christopher W. M. Kay, Sandro Roier, Hassane El Mkami, Enrico Salvadori, Ellen L. Zechner, Giulia Zanetti, Gabriel Waksman
Software Mentions: 1
Published: over 9 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.00492-16

Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function
Cited by: 30
Author(s): Nam K. Tonthat, Praveen R. Juvvadi, Hengshan Zhang, Soo Chan Lee, Ronald A. Venters, Leonard D. Spicer, William J. Steinbach, Joseph Heitman, Maria A. Schumacher
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.00872-16

Molecular Insights into the Fungus-Specific Serine/Threonine Protein Phosphatase Z1 in Candida albicans
Cited by: 21
Author(s): Emily Chen, M.S. Choy, Katalin Petrényi, Zoltán Kónya, Ferenc Erdődi, Viktor Dombrádi, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.cell.2021.05.041

Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily
Cited by: 44
Author(s): Jiwei Liu, Matteo Tassinari, Diorge P. Souza, Souvik Naskar, Jeffrey K. Noel, Olga Bohuszewicz, Martin Buck, Tom A. Williams, Buzz Baum, Harry H. Low
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cell.2013.05.046

OTU Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis
Cited by: 445
Author(s): T.E.T. Mevissen, Manuela K. Hospenthal, Paul P. Geurink, P.R. Elliott, Masato Akutsu, N. Arnaudo, Reggy Ekkebus, Yogesh Kulathu, Tobias Wauer, Farid El Oualid, Stefan Freund, Huib Ovaa, David Komander
Software Mentions: 1
Published: about 13 years ago

10.1016/j.cell.2016.10.005

Structure of the MIS12 Complex and Molecular Basis of Its Interaction with CENP-C at Human Kinetochores
Cited by: 120
Author(s): Arsen Petrovic, Jenny Keller, Yahui Liu, Katharina Overlack, Juliane John, Yoana N. Dimitrova, Simon Jenni, Suzan van Gerwen, Patricia Stege, Sabine Wohlgemuth, Pascaline Rombaut, Franz Herzog, Stephen C. Harrison, Ingrid R. Vetter, Andrea Musacchio
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.01543-16

Emergence of a Potent Multidrug Efflux Pump Variant That Enhances Campylobacter Resistance to Multiple Antibiotics
Cited by: 81
Author(s): Hong Yao, Zhangqi Shen, Yang Wang, Fengru Deng, Dejun Liu, Gaowa Naren, Lei Dai, Chih‐Chia Su, Bing Wang, Shaolin Wang, Congming Wu, Edward Yu, Qijing Zhang, Jianzhong Shen
Software Mentions: 1
Published: almost 10 years ago

10.3390/cancers12010030

Galectin-8 binds to the Farnesylated C-terminus of K-Ras4B and Modifies Ras/ERK Signaling and Migration in Pancreatic and Lung Carcinoma Cells
Cited by: 15
Author(s): Christopher Meinohl, Sarah J. Barnard, Karin Fritz‐Wolf, Monika Unger, Andreea Porr, Marisa Heipel, Stefanie Wirth, Johannes Madlung, Alfred Nordheim, André Menke, Katja Becker, Klaudia Giehl
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2018.02.032

Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance
Cited by: 33
Author(s): Anna Rubio-Cosials, Eike C. Schulz, Lotte Lambertsen, Georgy Smyshlyaev, Carlos Rojas‐Cordova, Kristoffer Forslund, Ezgi Karaca, Aleksandra Bebel, Peer Bork, O. Barábas
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0128222

The Flavonoid Luteolin, but Not Luteolin-7-O-Glucoside, Prevents a Transthyretin Mediated Toxic Response
Cited by: 28
Author(s): Irina Iakovleva, Afshan Begum, Małgorzata Pokrzywa, Malin Walfridsson, A. Elisabeth Sauer‐Eriksson, Anders Olofsson
Software Mentions: 1
Published: over 11 years ago

10.1016/j.cell.2020.09.049

A Therapeutic Non-self-reactive SARS-CoV-2 Antibody Protects from Lung Pathology in a COVID-19 Hamster Model
Cited by: 286
Author(s): Jakob Kreye, S. Momsen Reincke, Hans Christian Kornau, Elisa Sánchez-Sendín, Victor M. Corman, Hejun Liu, Meng Yuan, Nicholas C. Wu, Xueyong Zhu, Chang-Chun David Lee, Jakob Trimpert, Markus Höltje, Kristina Dietert, Laura Stöffler, Niels von Wardenburg, S. Van Hoof, Marie A. Homeyer, Jan Hoffmann, Azza Abdelgawad, Achim D. Gruber, Luca D. Bertzbach, Daria Vladimirova, Lucie Y. Li, Paula Charlotte Barthel, Karl Skriner, Andreas C. Hocke, Stefan Hippenstiel, Martin Witzenrath, Norbert Suttorp, Florian Kurth, Christiana Franke, Matthias Endres, Dietmar Schmitz, Lara M. Jeworowski, Anja Richter, Marie Luisa Schmidt, Tatjana Schwarz, Marcel A. Müller, Christian Drosten, Daniel Wendisch, Leif Erik Sander, Nikolaus Osterrieder, Ian A. Wilson, Harald Prüß
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 9 years ago

10.1016/j.yjsbx.2020.100021

Cryo-EM structure of the prefusion state of canine distemper virus fusion protein ectodomain
Cited by: 4
Author(s): David Kalbermatter, Neeta Shrestha, Flavio M. Gall, Marianne Wyss, Rainer Riedl, Philippe Plattet, Dimitrios Fotiadis
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2009.11.015

The Structural Basis for mRNA Recognition and Cleavage by the Ribosome-Dependent Endonuclease RelE
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Author(s): Cajetan Neubauer, Yong‐Gui Gao, Kasper R. Andersen, C.M. Dunham, A.C. Kelley, Jendrik Hentschel, Kenn Gerdes, V. Ramakrishnan, D.E. Brodersen
Software Mentions: 1
Published: over 16 years ago

10.1016/j.cell.2019.05.025

Human Antibodies that Slow Erythrocyte Invasion Potentiate Malaria-Neutralizing Antibodies
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Author(s): Daniel G. W. Alanine, Doris Quinkert, Rasika Kumarasingha, Shahid Mehmood, Francesca R. Donnellan, Nana Minkah, Bernadeta Dadonaite, Ababacar Diouf, Francis Galaway, Sarah E. Silk, Abhishek Jamwal, Joyce Marshall, Kazutoyo Miura, Lander Foquet, Sean C. Elias, Geneviève Labbé, Alexander D. Douglas, Jing Jin, Ruth Payne, Joseph J. Illingworth, David J. Pattinson, David Pulido, Barnabas G. Williams, Willem A. de Jongh, Gavin J. Wright, Stefan H. I. Kappe, Carol V. Robinson, Carole A. Long, Brendan S. Crabb, Paul R. Gilson, Matthew K. Higgins, Simon J. Draper
Software Mentions: 1
Published: about 7 years ago

10.1016/j.cell.2011.01.008

Structural Basis of the 9-Fold Symmetry of Centrioles
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Author(s): Daiju Kitagawa, Ioannis Vakonakis, Natacha Olieric, Manuel Hilbert, Debora Keller, V. Oliéric, Miriam Bortfeld, Michèle C. Erat, Isabelle Flückiger, Pierre Gönczy, Michel O. Steinmetz
Software Mentions: 1
Published: over 15 years ago

10.1016/j.chembiol.2017.05.014

The Structure of the Guanidine-II Riboswitch
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Author(s): Lin Huang, Jia Wang, David M.J. Lilley
Software Mentions: 1
Published: about 9 years ago

10.1016/j.chembiol.2017.08.021

Structure of the Guanidine III Riboswitch
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Author(s): Lin Huang, Jia Wang, Timothy J. Wilson, David M.J. Lilley
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.chembiol.2018.11.001

(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition
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Author(s): J.G.M. Rack, Antonio Ariza, Bryon Drown, Callum Henfrey, Edward Bartlett, Tomohiro Shirai, Paul J. Hergenrother, Ivan Ahel
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21175977

Lard Injection Matrix for Serial Crystallography
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Author(s): Ki Hyun Nam
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
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Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
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Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: almost 9 years ago

10.3390/cancers13071679

Conformation-Specific Inhibitory Anti-MMP-7 Monoclonal Antibody Sensitizes Pancreatic Ductal Adenocarcinoma Cells to Chemotherapeutic Cell Kill
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Author(s): Vishnu Mohan, Jean P. Gaffney, Inna Solomonov, Maxim Levin, Mordehay Klepfish, Sophia Akbareian, Barbara Grünwald, Orly Dym, Miriam Eisenstein, Kenneth H. Yu, David P. Kelsen, Achim Krüger, Dylan R. Edwards, Irit Sagi
Software Mentions: 1
Published: over 5 years ago

10.1016/j.yjsbx.2021.100049

Structural characterization of two solute-binding proteins for N,N′-diacetylchitobiose/N,N′,N′′-triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7
Cited by: 0
Author(s): Takafumi Itoh, Misaki Yaguchi, Akari Nakaichi, Moe Yoda, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0186110

The effect of the pathological V72I, D109N and T190M missense mutations on the molecular structure of α-dystroglycan
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Author(s): Sonia Covaceuszach, Manuela Bozzi, Maria Giulia Bigotti, Francesca Sciandra, Petr V. Konarev, Andrea Brancaccio, Alberto Cassetta
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41421-018-0009-2

Crystal structure of the human 5-HT1B serotonin receptor bound to an inverse agonist
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Author(s): Wanchao Yin, Xin Zhou, Dehua Yang, Parker W. de Waal, Meitian Wang, Antao Dai, Xiaoqing Cai, Chia‐Ying Huang, Ping Liu, Xiaoxi Wang, Yuanyuan Yin, Bo Liu, Yu Zhou, Jiang Wang, Hong Liu, Martin Caffrey, Karsten Melcher, Yechun Xu, Mingwei Wang, Hao Xu, Yi Jiang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41421-021-00283-0

Crystal structure of the INTS3/INTS6 complex reveals the functional importance of INTS3 dimerization in DSB repair
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Author(s): Jia Yu, Zhongtao Cheng, S.R. Bharath, Qingguo Sun, Nannan Su, Jun Huang, Haiwei Song
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
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Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0087134

Chemical Rescue and Inhibition Studies to Determine the Role of Arg301 in Phosphite Dehydrogenase
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Author(s): John E. Hung, Emily J. Fogle, Neha Garg, Jonathan R. Chekan, Satish K. Nair, Wilfred A. van der Donk
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0024621

Structure of Apo- and Monometalated Forms of NDM-1—A Highly Potent Carbapenem-Hydrolyzing Metallo-β-Lactamase
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Author(s): Young Chang Kim, C. Tesar, J. Mire, R. Jedrzejczak, Andrew Binkowski, G. Babnigg, James C. Sacchettini, A. Joachimiak
Software Mentions: 1
Published: almost 15 years ago

10.1038/s41421-018-0044-z

Structural visualization of RNA polymerase III transcription machineries
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Author(s): Yanping Han, Yan Cheng, Susan Fishbain, Ivaylo Ivanov, Yuan He
Software Mentions: 1
Published: about 8 years ago

10.1038/s41421-021-00284-z

Molecular insights into the human ABCB6 transporter
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Author(s): Guangyuan Song, Sensen Zhang, Mengqi Tian, Laixing Zhang, Runyu Guo, Wei Zhuo, Maojun Yang
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
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Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0157070

Structural and Functional Characterization of a Novel Family of Cyclophilins, the AquaCyps
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Author(s): R.P. Jakob, Philipp A. M. Schmidpeter, Johanna R. Koch, Franz X. Schmid, Timm Maier
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0158024

Mutation in the Pro-Peptide Region of a Cysteine Protease Leads to Altered Activity and Specificity—A Structural and Biochemical Approach
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Author(s): Sruti Dutta, Dibyasree Choudhury, Sumana Roy, J.K. Dattagupta, Sampa Biswas
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms21197166

Repurposing Benzbromarone for Familial Amyloid Polyneuropathy: A New Transthyretin Tetramer Stabilizer
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Author(s): Ellen Y Cotrina, Â. Oliveira, José P. Leite, Jordi Llop, Luı́s Gales, Jordi Quintana, Isabel Cardoso, Gemma Arsequell
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.chom.2020.06.003

Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor
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Author(s): Nicholas C. Wu, Sarah F. Andrews, Julie E. Raab, Sarah O’Connell, Chaim A. Schramm, Xintao Ding, Michael Chambers, Kwanyee Leung, Lingshu Wang, Yi Zhang, John R. Mascola, Daniel C. Douek, Julie E. Ledgerwood, Adrian B. McDermott, Ian A. Wilson
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.chom.2021.04.005

A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection
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Author(s): Hejun Liu, Meng Yuan, Deli Huang, Sandhya Bangaru, Fangzhu Zhao, Chang-Chun David Lee, Linghang Peng, Shawn Barman, Xueyong Zhu, David Nemazee, Dennis R. Burton, Marit J. van Gils, Rogier W. Sanders, Hans Christian Kornau, S. Momsen Reincke, Harald Prüß, Jakob Kreye, Nicholas C. Wu, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1038/s41423-018-0012-4

A critical epitope in CD147 facilitates memory CD4+ T-cell hyper-activation in rheumatoid arthritis
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Author(s): Na Guo, Sheng Ye, Kui Zhang, Yu Xl, Hong‐Yong Cui, Xiang-Min Yang, Lin Peng, Miaomiao Lv, Jinlin Miao, Yang Zhang, Qing Han, Rongguang Zhang, Zhi‐Nan Chen, Ping Zhu
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
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Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: about 7 years ago

10.1016/j.celrep.2021.109109

Diverse immunoglobulin gene usage and convergent epitope targeting in neutralizing antibody responses to SARS-CoV-2
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Author(s): Xiaojuan Zhou, Fengge Ma, Jun Xie, Meng Yuan, Yunqiao Li, Namir Shaabani, Fangzhu Zhao, Deli Huang, Nicholas C. Wu, Chang-Chun David Lee, Hejun Liu, Jiali Li, Zhonghui Chen, Yazhen Hong, Wen Hsien Liu, Nengming Xiao, Dennis R. Burton, Haijian Tu, Hang Li, Xin Chen, John R. Teijaro, Ian A. Wilson, Changchun Xiao, Zhenguo Huang
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.01497-19

Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO 2 Capture by a Surface-Exposed [Fe 4 S 4 ] Cluster
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Author(s): Lee A. Rettberg, Wonchull Kang, Martin T. Stiebritz, Caleb J. Hiller, Chi Chung Lee, Jasper Liedtke, Markus W. Ribbe, Yilin Hu
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21197375

Crystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2
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Author(s): Annika Rogstam, Maria Nyblom, Steffan Wittrup Christensen, C. Sele, V. Talibov, Therese Lindvall, Anna Andersson Rasmussen, Ingemar André, S.Z. Fisher, Wolfgang Knecht, Frank Kozielski
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21207787

High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtii—An Enzyme Involved in the Photosynthetic Calvin-Benson Cycle
Cited by: 3
Author(s): Théo Le Moigne, Pierre Crozet, Stéphane D. Lemaire, Julien Henri
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2014.06.001

FAN1 Activity on Asymmetric Repair Intermediates Is Mediated by an Atypical Monomeric Virus-type Replication-Repair Nuclease Domain
Cited by: 22
Author(s): Simon Pennell, Anne-Cécile Déclais, Jiejin Li, L.F. Haire, W.M.A. van den Berg, José W. Saldanha, Ian A. Taylor, John Rouse, David M.J. Lilley, Stephen J. Smerdon
Software Mentions: 1
Published: about 12 years ago

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