cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pbio.1001101

Ligand Activation of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC
Cited by: 100
Author(s): Iwan Zimmermann, Raimund Dutzler
Software Mentions: 1
Published: over 15 years ago

The structure of MgtE in the absence of magnesium provides new insights into channel gating
Cited by: 5
Author(s): Fengxiang Jin, Minxuan Sun, Takashi Fujii, Yasuhiro Yamada, Jin Wang, Andrés D. Maturana, Miki Wada, Shichen Su, Jinbiao Ma, H. Takeda, Tsukasa Kusakizako, Atsuhiro Tomita, Yoshiko Nakada-Nakura, Kehong Liu, T. Uemura, Yoshihiro Nomura, Koichi Ito, Osamu Nureki, Keiichi Namba, So Iwata, Ye Yu, Motoyuki Hattori
Software Mentions: 1
Published: over 5 years ago

10.1177/2472555220960428

Discovery of Drug-Like Ligands for the Mac1 Domain of SARS-CoV-2 Nsp3
Cited by: 30
Author(s): Rajdeep S Virdi, Robert Bavisotto, Nicholas C Hopper, Nemanja Vuksanovic, Trevor R Melkonian, N.R. Silvaggi, David N. Frick
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.1001511

Structural Basis of Rap Phosphatase Inhibition by Phr Peptides
Cited by: 50
Author(s): Francisca Gallego del Sol, Alberto Marina
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.1002393

Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels
Cited by: 39
Author(s): Carlo Bertozzi, Iwan Zimmermann, Sibylle Engeler, R.J.C. Hilf, Raimund Dutzler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.3000139

Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor-binding head domains
Cited by: 32
Author(s): Hannah L. Turner, Jesper Pallesen, Shanshan Lang, Sandhya Bangaru, Sarah Urata, Sheng Li, Christopher A. Cottrell, Charles A. Bowman, James E. Crowe, Ian A. Wilson, Andrew B. Ward
Software Mentions: 1
Published: over 7 years ago

10.1107/S2053230X16007202

Cyclization strategies of meditopes: affinity and diffraction studies of meditope–Fab complexes
Cited by: 6
Author(s): K.P. Bzymek, Yuelong Ma, Kendra A. Avery, David Horne, John C. Williams
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.1001034

A Structural and Mutagenic Blueprint for Molecular Recognition of Strychnine and d-Tubocurarine by Different Cys-Loop Receptors
Cited by: 88
Author(s): Marijke Brams, Anshul A. Pandya, Dmitry Kuzmin, René van Elk, L. Krijnen, Jerrel L. Yakel, Victor I. Tsetlin, August B. Smit, Chris Ulens
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.3000315

Atomic view into Plasmodium actin polymerization, ATP hydrolysis, and fragmentation
Cited by: 19
Author(s): Esa-Pekka Kumpula, A.J. Lopez, Leila Tajedin, Huijong Han, Inari Kursula
Software Mentions: 1
Published: over 7 years ago

10.1016/j.xpro.2021.100642

Protocol for improving diffraction quality of leucyl-tRNA synthetase 1 with methylation and post-crystallization soaking and cooling in cryoprotectants
Cited by: 0
Author(s): Sulhee Kim, Ina Yoon, Sung Hoon Kim, Kwang Yeon Hwang
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3000096

Molecular understanding of calcium permeation through the open Orai channel
Cited by: 47
Author(s): Xiaofen Liu, Gao Wu, Yi Yu, Xiaozhe Chen, Renci Ji, Jing Lü, Xin Li, Xing Zhang, Xue Yang, Yuequan Shen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.3001370

Structures of the mycobacterial membrane protein MmpL3 reveal its mechanism of lipid transport
Cited by: 19
Author(s): Chih‐Chia Su, Philip A. Klenotic, Meng Cui, Meinan Lyu, Christopher E. Morgan, Edward Yu
Software Mentions: 1
Published: about 5 years ago

10.1016/j.xpro.2021.100686

Protocol for the use of focused ion-beam milling to prepare crystalline lamellae for microcrystal electron diffraction (MicroED)
Cited by: 7
Author(s): Michael W. Martynowycz, Tamir Gonen
Software Mentions: 1
Published: about 5 years ago

10.1107/S1600577516017343

Conformational variation of proteins at room temperature is not dominated by radiation damage
Cited by: 48
Author(s): Silvia Russi, Ana González, L.R. Kenner, D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pbio.1001429

Inhibition of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC by Divalent Cations
Cited by: 42
Author(s): Iwan Zimmermann, Alessandro Marabelli, Carlo Bertozzi, Lucia G. Sivilotti, Raimund Dutzler
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pbio.1000554

Domain Swapping in Allosteric Modulation of DNA Specificity
Cited by: 20
Author(s): Chad K. Park, Hemant Joshi, Alka Agrawal, M. Imran Ghare, E.J. Little, Pete Dunten, Jurate Bitinaite, Nancy C. Horton
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pbio.3000367

Structural basis for recognition of the tumor suppressor protein PTPN14 by the oncoprotein E7 of human papillomavirus
Cited by: 40
Author(s): Hye-Yeoung Yun, Min Wook Kim, Hye Seon Lee, Wantae Kim, Ji Hye Shin, Hyunmin Kim, Hang‐Sik Shin, Hwangseo Park, Byung‐Ha Oh, Won Kon Kim, Kwang‐Hee Bae, Sang Chul Lee, Eun Woo Lee, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1000911

Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles
Cited by: 33
Author(s): Jonathan E. Kohn, Pavel V. Afonine, Jory Z. Ruscio, Paul D. Adams, Teresa Head‐Gordon
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pcbi.1004507

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit
Cited by: 78
Author(s): D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: almost 11 years ago

10.1107/S2053230X14019785

Structure of a short-chain dehydrogenase/reductase (SDR) within a genomic island from a clinical strain ofAcinetobacter baumannii
Cited by: 7
Author(s): Bhumika S. Shah, Sasha G. Tetu, S.J. Harrop, Ian T. Paulsen, Bridget C. Mabbutt
Software Mentions: 1
Published: about 12 years ago

10.1107/S0907444913016429

Structure of the AvrBs3–DNA complex provides new insights into the initial thymine-recognition mechanism
Cited by: 27
Author(s): Stefano Stella, Rafael Molina, Igor Yefimenko, Jesús Prieto, George Silva, Claudia Bertonati, Alexandre Juillerat, Phillippe Duchateau, Guillermo Montoya
Software Mentions: 1
Published: about 13 years ago

10.1107/S2053230X14005366

Structure of catabolite activator protein with cobalt(II) and sulfate
Cited by: 3
Author(s): Ramya Rangesh Rao, Catherine L. Lawson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1008750

ArdC, a ssDNA-binding protein with a metalloprotease domain, overpasses the recipient hsdRMS restriction system broadening conjugation host range
Cited by: 16
Author(s): Lorena González-Montes, Irene del Campo, M. Pilar Garcillán-Barcia, Fernando de la Cruz, Gabriel Moncalián
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1003102

Selective Pressure Causes an RNA Virus to Trade Reproductive Fitness for Increased Structural and Thermal Stability of a Viral Enzyme
Cited by: 50
Author(s): Moshe Dessau, Daniel H. Goldhill, Robert McBride, Paul Turner, Yorgo Modis
Software Mentions: 1
Published: almost 14 years ago

10.1126/sciadv.aax8855

Cryo–electron microscopy structure and analysis of the P-Rex1–Gβγ signaling scaffold
Cited by: 28
Author(s): Jennifer N. Cash, Sarah Urata, Sheng Li, Sandeep K. Ravala, Larisa Avramova, Michael D. Shost, J. Silvio Gutkind, John J.G. Tesmer, Michael A. Cianfrocco
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1003239

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice
Cited by: 67
Author(s): Qing-Feng Chen, Xiang-Song Chen, Quan Wang, Faben Zhang, Zhiyong Lou, Qifa Zhang, Dao‐Xiu Zhou
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1004544

Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome
Cited by: 97
Author(s): Jutta Vogelmann, Antoine Le Gall, Stephanie Déjardin, Frédéric Allemand, Adrien Gamot, Gilles Labesse, Olivier Cuvier, Nicolas Nègre, Martin Cohen‐Gonsaud, Emmanuel Margeat, Marcelo Nöllmann
Software Mentions: 1
Published: about 12 years ago

10.1126/sciadv.aax1836

Allosteric modulation of nucleoporin assemblies by intrinsically disordered regions
Cited by: 12
Author(s): Bartlomiej J. Blus, Junseock Koh, Aleksandra Królak, Hyuk‐Soo Seo, Elias Coutavas, Günter Blobel
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0006301

Evaluation of the Trypanosoma brucei 6-oxopurine salvage pathway as a potential target for drug discovery
Cited by: 27
Author(s): Eva Doleželová, D. Teran, Ondřej Gahura, Zuzana Kotrbová, Michaela Procházková, Dianne T. Keough, Petr Špaček, Dana Hocková, Luke W. Guddat, Alena Zı́ková
Software Mentions: 1
Published: over 8 years ago

10.1107/S2053230X17014844

Structure of the staphylococcal enterotoxin B vaccine candidate S19 showing eliminated superantigen activity
Cited by: 0
Author(s): Woo Hyeon Jeong, Dong Hyun Song, Gyeung Haeng Hur, Seong Tae Jeong
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0007894

Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase
Cited by: 43
Author(s): Hideaki Shimizu, Akatsuki Saito, Junko Mikuni, Emi E. Nakayama, Hiroo Koyama, Teruki Honma, Mikako Shirouzu, S. Sekine, Tatsuo Shioda
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0007815

Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites
Cited by: 6
Author(s): Pedro Jiménez‐Sandoval, Eduardo Castro‐Torres, Rogelio González‐González, Corina Díaz‐Quezada, Misraim Gurrola, Laura D. Camacho-Manriquez, Lucia Leyva-Navarro, Luis G. Brieba
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0003644

Structural Analysis of the Synthetic Duffy Binding Protein (DBP) Antigen DEKnull Relevant for Plasmodium vivax Malaria Vaccine Design
Cited by: 37
Author(s): Edwin Chen, Nichole D. Salinas, Francis B. Ntumngia, John Adams, Niraj H. Tolia
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.20391

Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms
Cited by: 139
Author(s): Daniel L. Kober, Jennifer Alexander‐Brett, Celeste M. Karch, Carlos Cruchaga, Marco Colonna, Michael J. Holtzman, Thomas Brett
Software Mentions: 1
Published: almost 10 years ago

10.1107/S2053230X16010694

Structure of the lutein-binding domain of human StARD3 at 1.74 Å resolution and model of a complex with lutein
Cited by: 38
Author(s): Martin P. Horvath, Evan W. George, Quang Tiến Long Trần, Kody Baumgardner, Gabe Zharov, Sarah Lee, Hassan Sharifzadeh, Saeed Shihab, Ty Mattinson, Binxing Li, Paul S. Bernstein
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pntd.0005932

Structural basis for the high specificity of a Trypanosoma congolense immunoassay targeting glycosomal aldolase
Cited by: 13
Author(s): Joar Pinto, Steven Odongo, Felicity Lee, Vaiva Gaspariunaite, Serge Muyldermans, Stefan Magez, Yann G.J. Sterckx
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0005084

Protein Translation Enzyme lysyl-tRNA Synthetase Presents a New Target for Drug Development against Causative Agents of Loiasis and Schistosomiasis
Cited by: 25
Author(s): Arvind Sharma, Manmohan Sharma, Manickam Yogavel, Amit Sharma
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0076983

Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Cited by: 51
Author(s): Kazuki Kato, Ryohei Ishii, Eiji Gotō, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Software Mentions: 1
Published: about 13 years ago

10.1016/j.isci.2021.102951

Structures of heat shock factor trimers bound to DNA
Cited by: 6
Author(s): Feng Niu, Feng Han, Sheng Wang, Avinash S. Punekar, Rudolf Ladenstein, Dacheng Wang, Qinghua Zhang, Jingjin Ding, Wei Liu
Software Mentions: 1
Published: about 5 years ago

10.1126/sciadv.abe2631

Structures of Rhodopseudomonas palustris RC-LH1 complexes with open or closed quinone channels
Cited by: 37
Author(s): David J. K. Swainsbury, Pu Qian, Philip J. Jackson, Kaitlyn M. Faries, Dariusz M. Niedzwiedzki, Elizabeth C. Martin, David A. Farmer, Lorna A. Malone, Rebecca Thompson, Neil A. Ranson, Daniel P. Canniffe, Mark J. Dickman, Dewey Holten, Christine Kirmaier, Andrew Hitchcock, C. Neil Hunter
Software Mentions: 1
Published: almost 6 years ago

10.1107/S139900471500423X

Structure determination of an integral membrane protein at room temperature from crystals in situ
Cited by: 33
Author(s): Danny Axford, James Foadi, Nien-Jen Hu, Hassanul G. Choudhury, So Iwata, Konstantinos Beis, Gwyndaf Evans, Yilmaz Alguel
Software Mentions: 1
Published: over 11 years ago

10.1126/sciadv.abg9676

Genetic prion disease–related mutation E196K displays a novel amyloid fibril structure revealed by cryo-EM
Cited by: 24
Author(s): Liqiang Wang, Kun Zhao, Han-Ye Yuan, Xiangning Li, Hai-Bin Dang, Yeyang Ma, Qiang Wang, Chen Wang, Yunpeng Sun, Jie Chen, Dan Li, Delin Zhang, Ping Yin, Cong Liu, Yi Liang
Software Mentions: 1
Published: about 5 years ago

10.1107/S2053230X17015515

Pteridine glycosyltransferase from Chlorobium tepidum: crystallization and X-ray analysis
Cited by: 0
Author(s): Killivalavan Asaithambi, Young Shik Park, Kon Ho Lee
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2053230X19003546

Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2
Cited by: 10
Author(s): Reina Nagamura, Masahiro Fukuda, Akihiro Kawamoto, Kyoko Matoba, Naoshi Dohmae, Ryuichiro Ishitani, Junichi Takagi, Osamu Nureki
Software Mentions: 1
Published: over 7 years ago

10.1038/s41597-019-0010-0

MHz data collection of a microcrystalline mixture of different jack bean proteins
Cited by: 4
Author(s): Marie Luise Grünbein, Johan Bielecki, A. Gorel, M. Stricker, Richard Bean, Marco Cammarata, Katerina Dörner, Lars Fröhlich, Elisabeth Hartmann, Steffen Hauf, M. Hilpert, Yoonhee Kim, Marco Kloos, Romain Letrun, Marc Messerschmidt, Grant Mills, Gabriela Nass Kovács, Marco Ramilli, C.M. Roome, Tokushi Sato, Matthias Scholz, Michel Sliwa, J. Sztuk-Dambietz, Martin H. Weik, Britta Weinhausen, Nasser Al-Qudami, Djelloul Boukhelef, Sándor Brockhauser, Wajid Ehsan, Moritz Emons, Sergey Esenov, Hans Fangohr, A. Kaukher, Thomas Kluyver, Max Lederer, Luis Maia, Maurizio Manetti, Thomas Michelat, A. Münnich, Florent Pallas, Guido Palmer, Gianpietro Previtali, Natascha Raab, A. Silenzi, J. Szuba, Sandhya Venkatesan, K. Wrona, Jun Zhu, R. Bruce Doak, Robert L. Shoeman, L. Foucar, J.P. Colletier, Adrian P. Mancuso, T.R.M. Barends, Claudiu A. Stan, Ilme Schlichting
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0026845

Crystal Structure of Outer Membrane Protein NMB0315 from Neisseria meningitidis
Cited by: 18
Author(s): Xiangyu Wang, Xue Yang, Chi Yang, Zhenhua Wu, Hui Xu, Yuequan Shen
Software Mentions: 1
Published: almost 15 years ago

10.1107/S2053230X17001406

The crystal structure of PD1, aHaemophilussurface fibril domain
Cited by: 2
Author(s): J. Wright, Maren Thomsen, R. Kolodziejczyk, Joshua Ridley, Jessica Sinclair, Glenn Carrington, Birendra Singh, Kristian Riesbeck, Adrian Goldman
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0164279

Functional and Structural Characterization of Purine Nucleoside Phosphorylase from Kluyveromyces lactis and Its Potential Applications in Reducing Purine Content in Food
Cited by: 18
Author(s): Durga Mahor, Anu Priyanka, Gandham S. Prasad, Krishan Gopal Thakur
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.02362

Structural basis of HIV-1 Vpu-mediated BST2 antagonism via hijacking of the clathrin adaptor protein complex 1
Cited by: 92
Author(s): Xiaofei Jia, Elizabeth Weber, Andrey Tokarev, Mary K. Lewinski, Maryan Rizk, Marissa Suarez, John Guatelli, Yong Xiong
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0093156

Crystal Structure of ORF210 from E. coli O157:H1 Phage CBA120 (TSP1), a Putative Tailspike Protein
Cited by: 16
Author(s): Chen Chen, Patrick Bales, Julia Greenfield, Ryan D. Heselpoth, Daniel Nelson, Osnat Herzberg
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.37172

A bacterial immunomodulatory protein with lipocalin-like domains facilitates host–bacteria mutualism in larval zebrafish
Cited by: 42
Author(s): Annah S. Rolig, Emily Goers Sweeney, Lila E Kaye, Michael D. DeSantis, Arden Perkins, Allison V. Banse, M. Kristina Hamilton, Karen Guillemin
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0134576

Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin
Cited by: 24
Author(s): Fengyun Ni, Elena Kondrashkina, Qinghua Wang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0017946

A Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain
Cited by: 43
Author(s): Philip S. Kerry, Juan Ayllón, Margaret Taylor, C. Hass, Alan P. Lewis, Adolfo Garcı́a-Sastre, R. E. Randall, Benjamin G. Hale, Rosemary Russell
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0019589

Crystal Structures of Two Aminoglycoside Kinases Bound with a Eukaryotic Protein Kinase Inhibitor
Cited by: 23
Author(s): D.H. Fong, Bing Xiong, Ji-Young Hwang, Albert M. Berghuis
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0168019

Structural Analysis of Thymidylate Synthase from Kaposi’s Sarcoma-Associated Herpesvirus with the Anticancer Drug Raltitrexed
Cited by: 18
Author(s): Yong Mi Choi, Hyun Ku Yeo, Young Woo Park, Jae Young Lee
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0115995

Crystal Structure of Human Importin-α1 (Rch1), Revealing a Potential Autoinhibition Mode Involving Homodimerization
Cited by: 20
Author(s): Hideyuki Miyatake, Akira Sanjoh, Satoru Unzai, Go Matsuda, Yasutoshi Tatsumi, Yoichi Miyamoto, Naoshi Dohmae, Yoko Aida
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.15718

Bile salt receptor complex activates a pathogenic type III secretion system
Cited by: 54
Author(s): Peng Li, Giomar Rivera-Cancel, Lisa N. Kinch, Dor Salomon, Diana R. Tomchick, Nick V. Grishin, Kim Orth
Software Mentions: 1
Published: over 10 years ago

10.1107/S2053230X17016272

Meditope–Fab interaction: threading the hole
Cited by: 1
Author(s): K.P. Bzymek, Yuelong Ma, Kendra N. Avery, David Horne, John C. Williams
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep09878

Auto-inhibitory Mechanism of the Human Mitochondrial RNase P Protein Complex
Cited by: 26
Author(s): Fengzhi Li, Xiaofen Liu, Weihong Zhou, Xue Yang, Yuequan Shen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0010482

Crystal Structure of the Neutralizing Llama VHH D7 and Its Mode of HIV-1 gp120 Interaction
Cited by: 32
Author(s): Andreas Hinz, D. Lutje Hulsik, Anna Forsman, Willie W. L. Koh, Hassan Belrhali, Andrea Gorlani, Hans de Haard, Robin A. Weiss, Theo Verrips, Winfríed Weissenhorn
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0010013

The Crystal Structure of PPIL1 Bound to Cyclosporine A Suggests a Binding Mode for a Linear Epitope of the SKIP Protein
Cited by: 23
Author(s): C. Stegmann, Reinhard Lührmann, Markus C. Wahl
Software Mentions: 1
Published: over 16 years ago

10.1038/srep09762

Protein stabilization utilizing a redefined codon
Cited by: 33
Author(s): Kazumasa Ohtake, Atsushi Yamaguchi, Takahito Mukai, Hiroki Kashimura, Nobutaka Hirano, Mitsuru Haruki, Sosuke Kohashi, Kazumasa Yamagishi, Kazutaka Murayama, Yuri Tomabechi, Takashi Itagaki, Ryogo Akasaka, Masahito Kawazoe, Chie Takemoto, Mikako Shirouzu, Shigeyuki Yokoyama, Kensaku Sakamoto
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0133370

Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids
Cited by: 30
Author(s): Carlos A. H. Fernandes, Filomena Cardoso, Walter Luís Garrido Cavalcante, Andreimar M. Soares, Maeli Dal-Pai-Silva, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 1
Published: over 11 years ago

10.1038/srep10451

A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
Cited by: 106
Author(s): Philip Roedig, Ismo Vartiainen, Ramona Duman, S. Panneerselvam, Nicolas Stübe, O. Lorbeer, Martin Warmer, Geoff Sutton, David I. Stuart, E. Weckert, Christian Dávid, Armin Wagner, A. Meents
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0042775

Structural Insights into the Assembly of CARMA1 and BCL10
Cited by: 34
Author(s): Siwei Li, Xue Yang, Jiushu Shao, Yuequan Shen
Software Mentions: 1
Published: about 14 years ago

10.1107/S0907444908040006

Model-building strategies for low-resolution X-ray crystallographic data
Cited by: 21
Author(s): Anjum M. Karmali, Tom L. Blundell, Nicholas Furnham
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0188620

Tetrahydrocarbazoles are a novel class of potent P-type ATPase inhibitors with antifungal activity
Cited by: 19
Author(s): Maike Bublitz, Lasse Kjellerup, Karen O'Hanlon Cohrt, Sandra Gordon, Anne Louise Mortensen, Johannes Clausen, T. David Pallin, John Bondo Hansen, Anja Thoe Fuglsang, William Dalby‐Brown, Anne-Marie Lund Winther
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.22153

Structural basis for subtype-specific inhibition of the P2X7 receptor
Cited by: 182
Author(s): Akira Karasawa, Toshimitsu Kawate
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0217292

Structural analysis of Cytochrome P450 BM3 mutant M11 in complex with dithiothreitol
Cited by: 4
Author(s): Karla Frydenvang, Marlies C. A. Verkade‐Vreeker, Floor Dohmen, Jan N. M. Commandeur, Maria Rafiq, Osman Mirza, Flemming Steen Jørgensen, Daan P. Geerke
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.20818

Structure of the active form of human origin recognition complex and its ATPase motor module
Cited by: 44
Author(s): Ante Tocilj, Kin Fan On, Zuanning Yuan, Jingchuan Sun, Elad Elkayam, Li H, Bruce Stillman, Leemor Joshua‐Tor
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0034354

Rational Design and Characterization of D-Phe-Pro-D-Arg-Derived Direct Thrombin Inhibitors
Cited by: 22
Author(s): Ana C. Figueiredo, Cristina C. Clement, Sheuli Zakia, Julian A. Gingold, Manfred Philipp, Pedro José Barbosa Pereira
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0071963

The Role of Protein Denaturation Energetics and Molecular Chaperones in the Aggregation and Mistargeting of Mutants Causing Primary Hyperoxaluria Type I
Cited by: 46
Author(s): Noel Mesa‐Torres, Israel Fabelo-Rosa, Débora Riverol, Cristina Yunta, Armando Albert, Eduardo Salido, Ángel L. Pey
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0055697

A Study on the Interaction of Rhodamine B with Methylthioadenosine Phosphorylase Protein Sourced from an Antarctic Soil Metagenomic Library
Cited by: 24
Author(s): Paulina Bartasun, Hubert Cieśliński, A. Bujacz, Anna Wierzbicka-Woś, Józef Kur
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0197635

Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1
Cited by: 9
Author(s): Hye-Yeoung Yun, Jinhyuk Lee, Hyunmin Kim, Hyojung Ryu, Hang‐Sik Shin, Byung‐Ha Oh, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0131218

Serendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases
Cited by: 14
Author(s): M.S. Gadd, Emil Bulatov, A. Ciulli
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0061303

Two Crystal Structures of Bombyx mori Lipoprotein 3 - Structural Characterization of a New 30-kDa Lipoprotein Family Member
Cited by: 6
Author(s): A.J. Pietrzyk, A. Bujacz, Jochen Mueller‐Dieckmann, Małgorzata Łochyńska, Mariusz Jaskólski, G. Bujacz
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0027599

The PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers
Cited by: 39
Author(s): Nada Lallous, Pierre Legrand, A.G. McEwen, Santiago Ramón‐Maiques, Jean‐Pierre Samama, Catherine Birck
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0014165

Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis
Cited by: 25
Author(s): Charles W. Pemble, Perdeep K. Mehta, Smriti Mehra, Zhenmei Li, Amanda Nourse, Richard Lee, Stephen W. White
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0144174

Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells
Cited by: 17
Author(s): Karen M. Plevock, Brian J. Galletta, Kevin C. Slep, Nasser M. Rusan
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep12830

Crystal structures of Mycobacterium tuberculosis GlgE and complexes with non-covalent inhibitors
Cited by: 12
Author(s): Jared Lindenberger, Sri Kumar Veleti, Brittney N. Wilson, Steven J. Sucheck, Donald R. Ronning
Software Mentions: 1
Published: about 11 years ago

10.1107/S0907444913011426

Molecular replacement then and now
Cited by: 54
Author(s): Giovanna Scapin
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0187544

Structure and function of a CE4 deacetylase isolated from a marine environment
Cited by: 32
Author(s): Tina R. Tuveng, U. Rothweiler, D.B.R.K. Gupta Udatha, Gustav Vaaje‐Kolstad, Arne O. Smalås, Vincent G. H. Eijsink
Software Mentions: 1
Published: almost 9 years ago

10.1107/S0907444909012098

Decision-making in structure solution using Bayesian estimates of map quality: thePHENIX AutoSolwizard
Cited by: 783
Author(s): Thomas C. Terwilliger, Paul D. Adams, Randy J. Read, Airlie J. McCoy, Nigel W. Moriarty, Ralf W. Grosse‐Kunstleve, Pavel V. Afonine, Peter H. Zwart, Li Wei Hung
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0026743

Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae
Cited by: 17
Author(s): Li He, Xiaoli Zhang, Lijun Bi, Jin He, Tao Jiang
Software Mentions: 1
Published: about 15 years ago

10.7554/eLife.60924

Uncovering the basis of protein-protein interaction specificity with a combinatorially complete library
Cited by: 34
Author(s): Thúy-Lan Võ Lite, Robert A. Grant, Isabel Nocedal, Megan L Littlehale, Monica S. Guo, Michael T. Laub
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0151285

Biochemistry and Crystal Structure of Ectoine Synthase: A Metal-Containing Member of the Cupin Superfamily
Cited by: 24
Author(s): Nils Widderich, S. Kobus, Astrid Höppner, Ramona Riclea, Andreas Seubert, Jeroen S. Dickschat, Johann Heider, Sander H. J. Smits, Erhard Bremer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0141543

Structural Characterisation of FabG from Yersinia pestis, a Key Component of Bacterial Fatty Acid Synthesis
Cited by: 13
Author(s): J.D. Nanson, Jade K. Forwood
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0096763

Structure and Inhibition of Mouse Leukotriene C4 Synthase
Cited by: 9
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Shabbir Ahmad, Abdul Aziz Qureshi, Michaela Mårback, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0160890

Structural Basis of Microtubule Destabilization by Potent Auristatin Anti-Mitotics
Cited by: 113
Author(s): Andrew B. Waight, Katja Bargsten, Svetlana O. Doronina, Michel O. Steinmetz, Django Sussman, A.E. Prota
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.03206

Serum amyloid A is a retinol binding protein that transports retinol during bacterial infection
Cited by: 105
Author(s): M.G. Derebe, Clare M Zlatkov, Sureka Gattu, Kelly A. Ruhn, Shipra Vaishnava, Gretchen E. Diehl, John B. MacMillan, Noelle S. Williams, Lora V. Hooper
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0070014

Development and Biotechnological Application of a Novel Endoxylanase Family GH10 Identified from Sugarcane Soil Metagenome
Cited by: 28
Author(s): Thabata M. Alvarez, Rosana Goldbeck, C.R. Santos, Douglas Antônio Alvaredo Paixão, Thiago Augusto Gonçalves, João Paulo L. Franco Cairo, Rodrigo Ferreira de Almeida, Isabela de Oliveira Pereira, G. J. Jackson, Júnio Cota, Fernanda Büchli, Ana Paula Citadini, Roberto Ruller, Carla Cristina Polo, Mário de Oliveira Neto, Mário Tyago Murakami, Fábio M. Squina
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0051128

Crystal Structure of Two Anti-Porphyrin Antibodies with Peroxidase Activity
Cited by: 10
Author(s): Victor Muñoz Robles, Jean‐Didier Maréchal, Amel Bahloul, Marie-Agnès Sari, Jean‐Pierre Mahy, Béatrice Golinelli‐Pimpaneau
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0195723

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA
Cited by: 10
Author(s): Wenling An, Yifei Du, Keqiong Ye
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0069125

Structural and Functional Characterisation of TesA - A Novel Lysophospholipase A from Pseudomonas aeruginosa
Cited by: 47
Author(s): Filip Kovačić, Joachim Granzin, Susanne Wilhelm, Biserka Kojić‐Prodić, Renu Batra‐Safferling, Karl‐Erich Jaeger
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0123934

Structural Analysis of the 14-3-3ζ/Chibby Interaction Involved in Wnt/β-Catenin Signaling
Cited by: 23
Author(s): Ryan C. Killoran, Jing‐Song Fan, Daiwen Yang, Brian H. Shilton, Wing‐Yiu Choy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0165139

The Human Mixed Lineage Leukemia 5 (MLL5), a Sequentially and Structurally Divergent SET Domain-Containing Protein with No Intrinsic Catalytic Activity
Cited by: 30
Author(s): S. Mas-y-mas, Marta Barbon, Catherine Teyssier, Hélène Déméné, João E. Carvalho, Louise E. Bird, А. А. Лебедев, Juliana Fattori, Michael Schubert, Christian Dumas, William Bourguet, Albane le Maire
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-28599-0

Understanding the indirect DNA read-out specificity of I-CreI Meganuclease
Cited by: 12
Author(s): Jesús Prieto, Pilar Negrete Redondo, Blanca López-Méndez, Marco D’Abramo, Nekane Merino, Francisco J. Blanco, P. Duchateau, Guillermo Montoya, Rafael Molina
Software Mentions: 1
Published: over 8 years ago

10.1107/S2053230X19001213

Substrate-analogue complex structure of Mycobacterium tuberculosis decaprenyl diphosphate synthase
Cited by: 8
Author(s): Tzu Ping Ko, Xiansha Xiao, Rey‐Ting Guo, Jian Huang, Weidong Liu, Chun‐Chi Chen
Software Mentions: 1
Published: over 7 years ago

10.1107/S2053230X15012121

Structural analysis ofClostridium acetobutylicumATCC 824 glycoside hydrolase from CAZy family GH105
Cited by: 1
Author(s): Katherine L. Germane, Matthew D. Servinsky, Elliot S. Gerlach, Christian Sund, Margaret M. Hurley
Software Mentions: 1
Published: about 11 years ago

10.1107/S2053230X1900904X

The crystal structure of haemoglobin from Atlantic cod
Cited by: 0
Author(s): Ronny Helland, Eva katrin Bjørkeng, U. Rothweiler, Magne O. Sydnes, Daniela M. Pampanin
Software Mentions: 1
Published: over 7 years ago

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Papers Mentioning PHENIX 2,287