cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
Cited by: 21
Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
Cited by: 17
Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: almost 9 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
Cited by: 38
Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
Cited by: 19
Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
Cited by: 26
Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.564161

A Proline-Rich Element in the Type III Secretion Protein FlhB Contributes to Flagellar Biogenesis in the Beta- and Gamma-Proteobacteria
Cited by: 3
Author(s): John C. Hook, Vitan Blagotinsek, Jan Pané‐Farré, Devid Mrusek, Florian Altegoer, Anita Dornes, Meike Schwan, Lukas Schier, Kai M. Thormann, Gert Bange
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20174245

Structural Insights into the Interaction of Cytochrome P450 3A4 with Suicide Substrates: Mibefradil, Azamulin and 6′,7′-Dihydroxybergamottin
Cited by: 16
Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.str.2012.08.011

The CDK9 Tail Determines the Reaction Pathway of Positive Transcription Elongation Factor b
Cited by: 31
Author(s): Sonja Baumli, A.J. Hole, Lan-Zhen Wang, M.E.M. Noble, Jane Endicott
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.str.2008.08.007

Structural Analysis of the Interactions Between Paxillin LD Motifs and α-Parvin
Cited by: 35
Author(s): Sonja Lorenz, Ioannis Vakonakis, E.D. Lowe, Iain D. Campbell, M.E.M. Noble, M.K. Hoellerer
Software Mentions: 1
Published: almost 18 years ago

10.1016/j.str.2008.05.006

Structural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46
Cited by: 193
Author(s): Natalia V. Murzina, X.Y. Pei, Wei Zhang, Mike Sparkes, Jose Vicente-Garcia, J. Venkatesh Pratap, Stephen H. McLaughlin, Tom Rolef Ben-Shahar, Alain Verreault, Ben F. Luisi, Ernest D. Laue
Software Mentions: 1
Published: about 18 years ago

10.3389/fmicb.2017.01110

3-Hydroxybenzoate 6-Hydroxylase from Rhodococcus jostii RHA1 Contains a Phosphatidylinositol Cofactor
Cited by: 9
Author(s): S. Montersino, E. te Poele, Roberto Orrù, Adrie H. Westphal, Arjan Barendregt, Albert J. R. Heck, Robert van der Geize, Lubbert Dijkhuizen, Andrea Mattevi, Willem J.H. van Berkel
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms20174301

Active Site Architecture and Reaction Mechanism Determination of Cold Adapted β-d-galactosidase from Arthrobacter sp. 32cB
Cited by: 11
Author(s): Maria Rutkiewicz, A. Bujacz, Marta Wanarska, Anna Wierzbicka-Woś, Hubert Cieśliński
Software Mentions: 1
Published: almost 7 years ago

10.1107/S0909049513020700

X-ray structure determination and deuteration of nattokinase
Cited by: 12
Author(s): Yasuhide Yanagisawa, Toshiyuki Chatake, Sawa Naito, Tadanori Ohsugi, Chieko Yatagai, Hiroyuki Sumi, Akio Kawaguchi, Kaori Chiba-Kamosida, Megumi Ogawa, Tatsumi Adachi, Yukio Morimoto
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.str.2014.11.020

Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
Cited by: 19
Author(s): G. Bunkóczi, Björn Wallner, Randy J. Read
Software Mentions: 1
Published: over 11 years ago

10.1084/jem.20191957

Metabolic bifunctionality of Rv0812 couples folate and peptidoglycan biosynthesis in Mycobacterium tuberculosis
Cited by: 4
Author(s): Katherine A. Black, Lei Duan, Lungelo Mandyoli, Bruna Pelegrim Selbach, Weizhen Xu, Sabine Ehrt, James C. Sacchettini, Kyu Y. Rhee
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jsb.2016.07.007

The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region
Cited by: 3
Author(s): Shintaro Aibara, Xiao Chen Bai, Murray Stewart
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2018.03014

Structural Analysis of the Hanks-Type Protein Kinase YabT From Bacillus subtilis Provides New Insights in its DNA-Dependent Activation
Cited by: 2
Author(s): Lei Shi, Andrea Cavagnino, Jean-Luc Rabefiraisana, Noureddine Lazar, I. Li de la Sierra-Gallay, Françoise Ochsenbein, Marie Valerio-Lepiniec, Agathe Urvoas, Philippe Minard, Ivan Mijaković, Sylvie Nessler
Software Mentions: 1
Published: over 7 years ago

10.1186/s13045-021-01032-2

Recurrent XPO1 mutations alter pathogenesis of chronic lymphocytic leukemia
Cited by: 25
Author(s): J. T. Walker, Zachary A. Hing, Bonnie K. Harrington, J.M. Baumhardt, Hatice Gülçin Özer, Amy Lehman, Brian Giacopelli, Larry Beaver, Katie Williams, Jordan Skinner, Casey B. Cempre, Qingxiang Sun, Sharon Shacham, Benjamin R. Stromberg, Matthew K. Summers, Lynne V. Abruzzo, Laura Z. Rassenti, Thomas J. Kipps, Sameer A. Parikh, Neil E. Kay, Kerry A. Rogers, Jennifer A. Woyach, Vincenzo Coppola, Yuh Min Chook, Christopher C. Oakes, John C. Byrd, Rosa Lapalombella
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ijpddr.2016.02.001

The Ascaris suum nicotinic receptor, ACR-16, as a drug target: Four novel negative allosteric modulators from virtual screening
Cited by: 15
Author(s): Fudan Zheng, Alan P. Robertson, Melanie Abongwa, Edward Yu, R. J. Martin
Software Mentions: 1
Published: over 10 years ago

10.4049/jimmunol.1303142

Mutational and Structural Analysis of KIR3DL1 Reveals a Lineage-Defining Allotypic Dimorphism That Impacts Both HLA and Peptide Sensitivity
Cited by: 46
Author(s): Geraldine M. O’Connor, J.P. Vivian, Jacqueline M.L. Widjaja, John S. Bridgeman, Emma Gostick, Bernard A. P. Lafont, Stephen Anderson, David A. Price, Andrëw G. Brööks, Jamie Rossjohn, Daniel W. McVicar
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2018.01369

The Structural and Functional Basis for Recurring Sulfa Drug Resistance Mutations in Staphylococcus aureus Dihydropteroate Synthase
Cited by: 49
Author(s): Elizabeth C. Griffith, Miranda J. Wallace, Yinan Wu, Gyanendra Kumar, Stefan Gajewski, Pamela Jackson, Gregory A. Phelps, Zhong Zheng, Charles O. Rock, Richard Lee, Stephen W. White
Software Mentions: 1
Published: about 8 years ago

10.1016/j.jinorgbio.2016.07.013

Use of ferrous iron by metallo-β-lactamases
Cited by: 20
Author(s): Samuel T. Cahill, Hanna Tarhonskaya, Anna M. Rydzik, Emily Flashman, M.A. McDonough, Christopher J. Schofield, Jürgen Brem
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.jinorgbio.2018.08.002

Structural and catalytic properties of the peroxygenase P450 enzyme CYP152K6 from Bacillus methanolicus
Cited by: 14
Author(s): Hazel M. Girvan, Harshwardhan Poddar, Kirsty J. McLean, David R. Nelson, Katherine A. Hollywood, Colin Levy, D. Leys, Andrew W. Munro
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.jlr.2021.100054

Molecular basis for the interaction of cellular retinol binding protein 2 (CRBP2) with nonretinoid ligands
Cited by: 6
Author(s): J.A. Silvaroli, Jacqueline Plau, Charlie H. Adams, Surajit Banerjee, Made Airanthi K. Widjaja‐Adhi, William S. Blaner, Marcin Golczak
Software Mentions: 1
Published: over 5 years ago

10.1021/acs.jmedchem.0c00373

Shedding X-ray Light on the Role of Magnesium in the Activity of Mycobacterium tuberculosis Salicylate Synthase (MbtI) for Drug Design
Cited by: 18
Author(s): Matteo Mori, Giovanni Stelitano, Arianna Gelain, Elena Pini, Laurent R. Chiarelli, Josè Camilla Sammartino, Giulio Poli, Tiziano Tuccinardi, Giangiacomo Beretta, Alessio Porta, M. Bellinzoni, Stefania Villa, Fiorella Meneghetti
Software Mentions: 1
Published: about 6 years ago

10.1128/JVI.00378-17

Structural Transitions of the Conserved and Metastable Hantaviral Glycoprotein Envelope
Cited by: 34
Author(s): Ilona Rissanen, Robert Stass, Antra Zeltina, Sai Li, Jussi Hepojoki, K. Harlos, Robert J.C. Gilbert, Juha T. Huiskonen, Thomas A. Bowden
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms21010308

In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices
Cited by: 1
Author(s): Yichen Zhang, Shu Wang, Zongchao Jia
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21010280

GTP Preference of d-Glycero-α-d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis
Cited by: 6
Author(s): Suwon Kim, Mi Sun Kim, Seri Jo, Dongkun Shin
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jmb.2010.11.039

Structural Basis for Langerin Recognition of Diverse Pathogen and Mammalian Glycans through a Single Binding Site
Cited by: 101
Author(s): H. Feinberg, Maureen E. Taylor, Nahid Razi, Ryan McBride, Yuriy A. Knirel, Sarah A. Graham, Kurt Drickamer, William I. Weis
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms21030915

Phenylthiourea Binding to Human Tyrosinase-Related Protein 1
Cited by: 11
Author(s): Xuelei Lai, Harry J. Wichers, Montserrat Soler-López, Bauke W. Dijkstra
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.697602

Structure of Blood Coagulation Factor VIII in Complex With an Anti-C2 Domain Non-Classical, Pathogenic Antibody Inhibitor
Cited by: 2
Author(s): Estelle K. Ronayne, Shaun C. Peters, Joseph S. Gish, Celena Wilson, H. Trent Spencer, Christopher B. Doering, Pete Lollar, P. Clint Spiegel, Kenneth C Childers
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21051689

N-terminal Backbone Pairing Shifts in CCL5-12AAA14 Dimer Interface: Structural Significance of the FAY Sequence
Cited by: 1
Author(s): Jin-Ye Li, Yi‐Chen Chen, Yi-Zong Lee, Chun‐Hsiang Huang, Shih‐Che Sue
Software Mentions: 1
Published: over 6 years ago

10.1016/j.yjsbx.2021.100044

Structural basis of enzyme activity regulation by the propeptide of l-lysine α-oxidase precursor from Trichoderma viride
Cited by: 2
Author(s): Masaki Kawamura, Norihisa Ito, Yuya Matsumoto, Masaya Saito, Takashi Tamura, Hitoshi Kusakabe, Kenji Inagaki, Katsumi Imada
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jmb.2011.01.029

Structure of Rhomboid Protease in a Lipid Environment
Cited by: 81
Author(s): Kutti R. Vinothkumar
Software Mentions: 1
Published: over 15 years ago

10.3389/fimmu.2019.02047

Structure Based Prediction of Neoantigen Immunogenicity
Cited by: 61
Author(s): Timothy P. Riley, Grant L.J. Keller, Angela R. Smith, Lauren M. Davancaze, Alyssa G. Arbuiso, Jason R. Devlin, Brian M. Baker
Software Mentions: 1
Published: almost 7 years ago

10.1107/S0909049513022164

Creation and structure determination of an artificial protein with three complete sequence repeats
Cited by: 2
Author(s): Motoyasu Adachi, R Shimizu, Ryota Kuroki, Michael Blaber
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.jmb.2017.08.010

Structures of Leishmania Fructose-1,6-Bisphosphatase Reveal Species-Specific Differences in the Mechanism of Allosteric Inhibition
Cited by: 9
Author(s): Meng Yuan, Montserrat G. Vásquez-Valdivieso, I.W. McNae, Paul A.M. Michels, Linda A. Fothergill‐Gilmore, Malcolm D. Walkinshaw
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2017.01234

Unveiling a Drift Resistant Cryptotope within Marburgvirus Nucleoprotein Recognized by Llama Single-Domain Antibodies
Cited by: 14
Author(s): J.A. Garza, Alexander B. Taylor, Laura J. Sherwood, P. John Hart, Andrew Hayhurst
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms21113940

The Structural Basis of the Binding of Various Aminopolycarboxylates by the Periplasmic EDTA-Binding Protein EppA from Chelativorans sp. BNC1
Cited by: 3
Author(s): K.M. Lewis, C.L. Greene, S.A. Sattler, BuHyun Youn, Luying Xun, ChulHee Kang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.jmb.2007.09.055

Predicting Protein Function from Structure—The Roles of Short-chain Dehydrogenase/Reductase Enzymes in Bordetella O-antigen Biosynthesis
Cited by: 19
Author(s): Jerry D. King, Nicholas J. Harmer, Andrew Preston, Colin M. Palmer, Martin Rejzek, Robert A. Field, Tom L. Blundell, Duncan J. Maskell
Software Mentions: 1
Published: almost 19 years ago

10.1016/j.yjsbx.2020.100021

Cryo-EM structure of the prefusion state of canine distemper virus fusion protein ectodomain
Cited by: 4
Author(s): David Kalbermatter, Neeta Shrestha, Flavio M. Gall, Marianne Wyss, Rainer Riedl, Philippe Plattet, Dimitrios Fotiadis
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jmb.2017.08.007

Studies on the Interaction of the Histone Demethylase KDM5B with Tricarboxylic Acid Cycle Intermediates
Cited by: 26
Author(s): Hanna Tarhonskaya, Radosław P. Nowak, C. Johansson, A. Szykowska, Anthony Tumber, Rebecca L. Hancock, Pauline A. Lang, Emily Flashman, U. Oppermann, Christopher J. Schofield, Akane Kawamura
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.jmb.2008.09.085

Repetitive Architecture of the Haemophilus influenzae Hia Trimeric Autotransporter
Cited by: 52
Author(s): Guoyu Meng, Joseph W. St. Geme, Gabriel Waksman
Software Mentions: 1
Published: over 17 years ago

10.1016/j.yjsbx.2021.100049

Structural characterization of two solute-binding proteins for N,N′-diacetylchitobiose/N,N′,N′′-triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7
Cited by: 0
Author(s): Takafumi Itoh, Misaki Yaguchi, Akari Nakaichi, Moe Yoda, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21175977

Lard Injection Matrix for Serial Crystallography
Cited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 1
Published: about 6 years ago

10.1016/j.jmb.2017.11.016

The Y. bercovieri Anbu crystal structure sheds light on the evolution of highly (pseudo)symmetric multimers
Cited by: 4
Author(s): Anna Piasecka, H. Czapinska, Marie‐Theres Vielberg, Roman H. Szczepanowski, R. Kiefersauer, Simon H. Reed, M. Groll, Matthias Bochtler
Software Mentions: 1
Published: over 8 years ago

10.1107/S0909049513021572

Structural studies of haemoglobin from pisces species shortfin mako shark (Isurus oxyrinchus)at 1.9 Å resolution
Cited by: 5
Author(s): Ramesh Pandian, S. Sundaresan, Pon. Sathya Moorthy, Mahalingam Balasubramanian, M. N. Ponnuswamy
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.jmb.2011.10.036

Structure of the Glycosyltransferase EryCIII in Complex with its Activating P450 Homologue EryCII
Cited by: 30
Author(s): Martin C. Moncrieffe, M. J. Fernàndez, Dieter Spiteller, Hideki Matsumura, Ben F. Luisi, Peter F. Leadlay
Software Mentions: 1
Published: over 14 years ago

10.3390/ijms21197166

Repurposing Benzbromarone for Familial Amyloid Polyneuropathy: A New Transthyretin Tetramer Stabilizer
Cited by: 15
Author(s): Ellen Y Cotrina, Â. Oliveira, José P. Leite, Jordi Llop, Luı́s Gales, Jordi Quintana, Isabel Cardoso, Gemma Arsequell
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21197375

Crystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2
Cited by: 45
Author(s): Annika Rogstam, Maria Nyblom, Steffan Wittrup Christensen, C. Sele, V. Talibov, Therese Lindvall, Anna Andersson Rasmussen, Ingemar André, S.Z. Fisher, Wolfgang Knecht, Frank Kozielski
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2020.00179

Conformational Plasticity of HLA-B27 Molecules Correlates Inversely With Efficiency of Negative T Cell Selection
Cited by: 5
Author(s): Bernhard Loll, Christine Rückert, Barbara Uchańska-Ziegler, Andreas Ziegler
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21207787

High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtii—An Enzyme Involved in the Photosynthetic Calvin-Benson Cycle
Cited by: 3
Author(s): Théo Le Moigne, Pierre Crozet, Stéphane D. Lemaire, Julien Henri
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.jmb.2010.02.026

Structural and Biochemical Bases for the Redox Sensitivity of Mycobacterium tuberculosis RslA
Cited by: 42
Author(s): Krishan Gopal Thakur, T. Praveena, B. Gopal
Software Mentions: 1
Published: over 16 years ago

10.1016/j.fob.2015.03.013

Crystal structure of X‐prolyl aminopeptidase fromCaenorhabditis elegans: A cytosolic enzyme with a di‐nuclear active site
Cited by: 11
Author(s): Shalini Iyer, Penelope J. La-Borde, K.A.P. Payne, Mark R. Parsons, Anthony J. Turner, R. Elwyn Isaac, K. Ravi Acharya
Software Mentions: 1
Published: over 11 years ago

10.1016/j.jmb.2015.12.018

Pi Release Limits the Intrinsic and RNA-Stimulated ATPase Cycles of DEAD-Box Protein 5 (Dbp5)
Cited by: 14
Author(s): Emily V. Wong, Wenxiang Cao, Judit Vörös, Monique Merchant, Yorgo Modis, David D. Hackney, Ben Montpetit, Enrique M. De La Cruz
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.55966

A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment
Cited by: 31
Author(s): Xinru Wang, Dimitriya H Garvanska, Isha Nasa, Yumi Ueki, Gang Zhang, Arminja N. Kettenbach, Wolfgang Peti, Jakob Nilsson, Rebecca Page
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.21465

Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense
Cited by: 55
Author(s): Annette Fischer, Kelly S. Harrison, Y. Ramirez, Daniela Auer, Suvagata Roy Chowdhury, Bhupesh K. Prusty, Florian Sauer, Zoe Dimond, Caroline Kisker, P. Scott Hefty, Thomas Rudel
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.61496

Structural basis of ClpXP recognition and unfolding of ssrA-tagged substrates
Cited by: 34
Author(s): Fu‐Shan Xue, Tristan A Bell, Sarah R. Barkow, T.A. Baker, Robert T. Sauer
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.53530

New approach for membrane protein reconstitution into peptidiscs and basis for their adaptability to different proteins
Cited by: 44
Author(s): Gabriella Angiulli, Harveer Singh Dhupar, Hiroshi Suzuki, Irvinder Singh Wason, Franck Duong, Thomas Walz
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.02391

Re-examining how complexin inhibits neurotransmitter release
Cited by: 65
Author(s): Thorsten Trimbuch, Junjie Xu, David K. Flaherty, Diana R. Tomchick, Josep Rizo, Christian Rosenmund
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms21218186

Structural Insight on Functional Regulation of Human MINERVA Protein
Cited by: 1
Author(s): Hyunggu Hahn, Dong‐Eun Lee, Dong Man Jang, Jiyoun Kim, Yeon Lee, Heesun Cheong, Byung Woo Han, Hyoun Sook Kim
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.61056

Antibody escape by polyomavirus capsid mutation facilitates neurovirulence
Cited by: 8
Author(s): Matthew D Lauver, Daniel J. Goetschius, Colleen S. Netherby, Katelyn N Ayers, Ge Jin, Daniel G Haas, Elizabeth Frost, Sung Hyun Cho, Carol M. Bator, Stephanie M. Bywaters, Neil D. Christensen, Susan Hafenstein, Aron E. Lukacher
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.04187

Crystal structure of PfRh5, an essential P. falciparum ligand for invasion of human erythrocytes
Cited by: 52
Author(s): Lin Chen, Yibin Xu, Julie Healer, Jay Daniel Thompson, Brian J. Smith, Michael C. Lawrence, Alan F. Cowman
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms21218367

The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms
Cited by: 1
Author(s): Hannes M. Beyer, Salla I. Virtanen, A. Sesilja Aranko, Kornelia M. Mikula, G.T. Lountos, Alexander Wlodawer, O. H. Samuli Ollila, Hideo Iwaï
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.36758

Structures reveal opening of the store-operated calcium channel Orai
Cited by: 76
Author(s): Xiaowei Hou, Shana R. Burstein, Stephen B. Long
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms21249377

Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90
Cited by: 6
Author(s): Sang Chul Shin, Ashraf K. El-Damasy, Ju Hyeon Lee, Seon Hee Seo, Ji Hyun Kim, Young Ho Seo, Yuri Lee, Yu Ji, Eun Kyoung Bang, Eunice EunKyeong Kim, Gyochang Keum
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.24149

Cryo-EM structure of the ATP-sensitive potassium channel illuminates mechanisms of assembly and gating
Cited by: 155
Author(s): Gregory M. Martin, Craig Yoshioka, Emily A. Rex, Jonathan F. Fay, Qing Xie, Matthew R. Whorton, James Z. Chen, Show Ling Shyng
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.17755

A near atomic structure of the active human apoptosome
Cited by: 62
Author(s): Tianfan Cheng, Chuan Hong, Ildikó V. Akey, Shujun Yuan, Christopher W. Akey
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.43959

Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration
Cited by: 25
Author(s): Zachary F. Hallberg, Chi Ho Chan, Todd A. Wright, Philip J. Kranzusch, Kevin W. Doxzen, James J Park, Daniel R. Bond, Ming C. Hammond
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22020852

Rational Design of CYP3A4 Inhibitors: A One-Atom Linker Elongation in Ritonavir-Like Compounds Leads to a Marked Improvement in the Binding Strength
Cited by: 14
Author(s): Eric R. Samuels, Irina F. Sevrioukova
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.21137

Elucidation of a four-site allosteric network in fibroblast growth factor receptor tyrosine kinases
Cited by: 35
Author(s): Huaibin Chen, William M. Marsiglia, Min Kyu Cho, Zhifeng Huang, Jingjing Deng, Steven P. Blais, Weiming Gai, Shibani Bhattacharya, Thomas A. Neubert, Nathaniel J. Traaseth, Moosa Mohammadi
Software Mentions: 1
Published: over 9 years ago

10.1128/JVI.00923-19

The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation
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Author(s): Daniel Wrapp, Jason S. McLellan
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.43204

The cryo-EM structure of a 12-subunit variant of RNA polymerase I reveals dissociation of the A49-A34.5 heterodimer and rearrangement of subunit A12.2
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Author(s): Lucas Tafur, Yashar Sadian, Jonas Hanske, René Wetzel, Félix Weis, Christoph W. Müller
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.12411

The Sec7 N-terminal regulatory domains facilitate membrane-proximal activation of the Arf1 GTPase
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Author(s): Brian C. Richardson, Steve Halaby, Margaret A. Gustafson, J. Christopher Fromme
Software Mentions: 1
Published: over 10 years ago

10.1002/1873-3468.12054

Crystal structures of penicillin-binding protein 3 in complexes with azlocillin and cefoperazone in both acylated and deacylated forms
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Author(s): Jingshan Ren, Joanne E. Nettleship, Alexandra Males, David I. Stuart, Raymond J. Owens
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms22094519

Structural Fluctuations of the Human Proteasome α7 Homo-Tetradecamer Double Ring Imply the Proteasomal α-Ring Assembly Mechanism
Cited by: 1
Author(s): Chihong Song, Tadashi Satoh, Taichiro Sekiguchi, Koichi Kato, Kazuyoshi Murata
Software Mentions: 1
Published: over 5 years ago

10.1016/j.yjsbx.2020.100035

FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations
Cited by: 13
Author(s): Haley M. Wilt, Ping Yü, Kemin Tan, Yun‐Xing Wang, Jason R. Stagno
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.22520

Structure and function of the mycobacterial transcription initiation complex with the essential regulator RbpA
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Author(s): Elizabeth A. Hubin, Allison Fay, Catherine K. Xu, James Bean, Ruth M. Saecker, Michael S. Glickman, Seth A. Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.23905

Elucidation of the anti-autophagy mechanism of the Legionella effector RavZ using semisynthetic LC3 proteins
Cited by: 64
Author(s): Aimin Yang, Supansa Pantoom, Yao‐Wen Wu
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.35898

Structural insights into the architecture and membrane interactions of the conserved COMMD proteins
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Author(s): Michael D. Healy, Manuela K. Hospenthal, Ryan J. Hall, Mintu Chandra, Molly Chilton, Vikas A. Tillu, Kai‐En Chen, Dion J. Celligoi, Fiona J. McDonald, Peter J. Cullen, J.S. Lott, Brett M. Collins, Rajesh Ghai
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms22115651

Structure and Dynamics of Meprin β in Complex with a Hydroxamate-Based Inhibitor
Cited by: 5
Author(s): Miriam Linnert, Claudia Fritz, Christian Jäger, Dagmar Schlenzig, Daniel Ramsbeck, Martin Kleinschmidt, Michael Wermann, Hans‐Ulrich Demuth, C. Parthier, Stephan Schilling
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.19058

Molecular basis of sidekick-mediated cell-cell adhesion and specificity
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Author(s): K.M. Goodman, Masahito Yamagata, Xiangshu Jin, Seetha Mannepalli, Phinikoula S. Katsamba, Göran Ahlsén, Alina P. Sergeeva, Barry Honig, Joshua R. Sanes, Lawrence Shapiro
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms22115831

Structural Basis for the Diminished Ligand Binding and Catalytic Ability of Human Fetal-Specific CYP3A7
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Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22115668

The Importance of N186 in the Alpha-1-Antitrypsin Shutter Region Is Revealed by the Novel Bologna Deficiency Variant
Cited by: 1
Author(s): Riccardo Ronzoni, Ilaria Ferrarotti, Emanuela D’Acunto, Alice Maria Balderacchi, Stefania Ottaviani, David A. Lomas, James A. Irving, Elena Miranda, Annamaria Fra
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22136861

Plumbagin, a Natural Product with Potent Anticancer Activities, Binds to and Inhibits Dihydroorotase, a Key Enzyme in Pyrimidine Biosynthesis
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Author(s): Hong‐Hsiang Guan, Yen‐Hua Huang, En‐Shyh Lin, Chun‐Jung Chen, Cheng-Yang Huang
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.11859

A G-protein activation cascade from Arl13B to Arl3 and implications for ciliary targeting of lipidated proteins
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Author(s): Katja Gotthardt, Mandy Lokaj, Carolin Koerner, Nathalie Falk, Andreas Gießl, Alfred Wittinghofer
Software Mentions: 1
Published: almost 11 years ago

10.1096/fba.2018-00039

A novel mutation alters the stability of PapA2 resulting in the complete abrogation of sulfolipids in clinical mycobacterial strains
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Author(s): Vipul Panchal, Nidhi Jatana, Anchal Malik, Bhupesh Taneja, Ravikant Pal, Apoorva Bhatt, Gurdyal S. Besra, Lipi Thukral, Sarika Chaudhary, V. Pandu Ranga Rao
Software Mentions: 1
Published: over 7 years ago

10.3389/fendo.2018.00011

Screening for PPAR Non-Agonist Ligands Followed by Characterization of a Hit, AM-879, with Additional No-Adipogenic and cdk5-Mediated Phosphorylation Inhibition Properties
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Author(s): Helder Veras Ribeiro Filho, Natália Bernardi Videira, Aline Villanova Bridi, Thais Tittanegro, Fernanda Aparecida Heleno Batista, José Geraldo de Carvalho Pereira, Paulo Sérgio Lopes de Oliveira, Marcio C. Bajgelman, Albane le Maire, Ana Carolina M. Figueira
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.36402

Cryo-EM structure of alpha-synuclein fibrils
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Author(s): Ricardo C. Guerrero-Ferreira, Nicholas M. I. Taylor, Daniel Mona, Philippe Ringler, Matthias E. Lauer, Roland Riek, Markus Britschgi, Henning Stahlberg
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.34823

Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts
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Author(s): Hande Boyaci, James Chen, Mirjana Lilić, Margaret Palka, Rachel A. Mooney, Robert Landick, Seth A Darst, Elizabeth A. Campbell
Software Mentions: 1
Published: over 8 years ago

10.1140/epjc/s10052-017-4940-4

Energy dependence of forward-rapidity $$\mathrm {J}/\psi $$ J / ψ and $$\psi \mathrm {(2S)}$$ ψ ( 2 S ) production in pp collisions at the LHC
Cited by: 29
Author(s): S. Acharya, D. Adamová, M. M. Aggarwal, G. Aglieri Rinella, M. Agnello, Neelima Agrawal, Z. Ahammed, N. Ahmad, Sang Un Ahn, S. Aiola, A. Akindinov, Sk Noor Alam, D. S. D. Albuquerque, D. Aleksandrov, B. Alessandro, D. Alexandre, R. Alfaro Molina, A. Alici, A. Alkin, J. Alme, T. Alt, I. Altsybeev, C. Alves Garcia Prado, M. R. An, C. Andrei, H. A. Andrews, A. Andronic, V. Anguelov, C. Anson, T. Antičić, F. Antinori, P. Antonioli, R. Anwar, L. Aphecetche, H. Appelshäuser, S. Arcelli, R. Arnaldi, O. W. Arnold, I. C. Arsene, M. Arslandok, B. Audurier, A. Augustinus, R. Averbeck, M. D. Azmi, A. Badalà, Yongwook Baek, S. Bagnasco, R. Bailhache, R. Bala, A. Baldisseri, M. Ball, R. C. Baral, Anastasia Maria Barbano, R. Barbera, F. Barile, L. Barioglio, G. G. Barnaföldi, L. S. Barnby, V. Barret, P. Bartalini, K. Barth, J. Bartke, E. Bartsch, M. Basile, N. Bastid, S. Basu, B. Bathen, G. Batigne, A. Batista Camejo, B. Batyunya, P. C. Batzing, I. G. Bearden, H. P. Beck, C. Bedda, N. K. Behera, I. Belikov, F. Bellini, H. Bello Martínez, R. Bellwied, L. G. E. Beltran, V. Belyaev, G. Bencédi, S. Beolè, A. Bercuci, Y. Berdnikov, D. Berényi, R. A. Bertens, D. Berzano, L. Betev, A. Bhasin, I. R. Bhat, A. K. Bhati, B. Bhattacharjee, J. Bhom, L. Bianchi, N. Bianchi, C. Bianchin, J. Bielčík, J. Bielčíková, A. Bilandzic, G. Bíró, R. Biswas, S. Biswas, Justin Thomas Blair, D. Blau, C. Blume, G. Boca, F. Bock, A. Bøgdanov, L. Boldizsár, M. Bombara, G. Bonomi, M. Bonora, J. Book, H. Borel, A. Borissov, M. Borri, E. Botta, C. Bourjau, P. Braun‐Munzinger, M. Bregant, T. A. Broker, T. A. Browning, M. Broz, E. Brücken, E. Bruna, G. E. Bruno, D. Budnikov, H. Buesching, S. Bufalino, P. Bühler, S.A. Iga Buitron, P. Bunčić, O. Busch, Z. Buthelezi, J. Butt, J. T. Buxton, J. Cabala, D. Caffarri, H. Caines, A. Caliva, E. Calvo Villar, P. Camerini, A. A. Capon, F. Carena, W. Carena, F. Carnesecchi, J. Castillo Castellanos, A. Castro, E. A. R. Casula, C. Ceballos Sànchez, P. Cerello, B. Chang, S. Chapeland, M. Chartier, J. L. Charvet, S. Chattopadhyay, A. Chauvin, M. Cherney, C. Cheshkov, B. Cheynis, V. Chibante Barroso, D. D. Chinellato, S. Cho, P. Chochula, K. E. Choi, M. Chojnacki, S. Choudhury, P. Christakoglou, C. H. Christensen, P. Christiansen, T. Chujo, S. U. Chung, C. Cicalò, L. Cifarelli, F. Cindolo, J. Cleymans, F. Colamaria, D. Colella, A. Collu, M. Colocci, M. Concas, G. Conesa Balbastre, Z. Conesa del Valle, M. Connors, J. G. Contreras, T. M. Cormier, Y. Corrales Morales, I. Cortés Maldonado, P. Cortese, M. R. Cosentino, F. Costa, S. Costanza, J. Crkovská, P. Crochet, E. Cuautle, L. Cunqueiro, T. Dahms, A. Dainese, Meike Charlotte Danisch, A. Danu, D. Das, I. Das, S. Das, A. Dash, S. Dash, S. De, A. De, G. de Cataldo, C. de Conti, J. de Cuveland, A. De Falco, D. De Gruttola, N. De Marco, S. De Pasquale, R. Derradi de Souza, H. F. Degenhardt, A. Deisting, A. Deloff, C. Deplano, P. Dhankher, D. Di Bari, A. Di Mauro, P. Di Nezza, B. Di Ruzza, M. A. Diaz Corchero, T. Dietel, P. Dillenseger, R. Divià, Oeystein Djuvsland, A. Dobrin, D. Domenicis Gimenez, B. Dönigus, O. Dordic, T. Drozhzhova, A. K. Dubey, A. Dubla, L. Ducroux, A. K. Duggal, P. Dupieux, R. J. Ehlers, D. Elia, E. Endress, H. Engel, E. Epple, B. Erazmus, F. Erhardt, B. Espagnon, S. Esumi, G. Eulisse, J. Eum, D. Evans, S. Evdokimov, L. Fabbietti, J. Faivre, A. Fantoni, M. Fasel, L. Feldkamp, A. Feliciello, Г. Феофилов, J. Ferencei, A. Fernández Téllez, E. G. Ferreiro, A. Ferretti, A. Festanti, Victor Jose Gaston Feuillard, J. Figiel, M. A. S. Figueredo, S. Filchagin, D. Finogeev, F. M. Fionda, E. M. Fiore, M. Floris, S. Foertsch, P. Foka, S. Fokin, E. Fragiacomo, A. Francescon, A. Francisco, U. Frankenfeld, G. G. Fronzé, U. Fuchs, C. Furget, A. Furs, M. Fusco Girard, J. J. Gaardhøje, M. Gagliardi, A. M. Gago, K. Gajdosova, M. Gallio, Carlos Duarte Galvan, P. Ganoti, C. Gao, C. Garabatos, E. García-Solis, K. Garg, P. Garg, C. Gargiulo, P. Gasik, Erin Frances Gauger, M. Germain, P. Ghosh, S. K. Ghosh, P. Gianotti, P. Giubellino, P. Giubilato, E. Gładysz-Dziaduś, P. Glässel, D. M. Goméz Coral, A. Gómez Ramírez, A. S. González, V. González, P. González-Zamora, S. Gorbunov, L. Görlich, S. Gotovac, V. Grabski, L. K. Graczykowski, K. L. Graham, L. Greiner, A. Grelli, C. Grigoras, V. Grigoriev, A. Grigoryan, S. Grigoryan, N. Grion, J. M. Gronefeld, F. Grosa, J. F. Grosse-Oetringhaus, R. Grosso, L. Gruber, Frederik Grüll, F. Guber, R. Guernane, B. Guerzoni, K. Gulbrandsen, T. Gunji, A. Gupta, R. Gupta, Irais Bautista Guzman, R. Haake, C. Hadjidakis, H. Hamagaki, G. Hamar, J. C. Hamon, J. W. Harris, A. Harton, D. Hatzifotiadou, S. Hayashi, S. T. Heckel, E. Hellbär, Haavard Helstrup, A. Herghelegiu, G. Herrera Corral, F. Herrmann, B. A. Hess, K. F. Hetland, H. Hillemanns, B. Hippolyte, J. Hladký, B. Hohlweger, D. Horak, R. Hosokawa, P. Hristov, C. Hughes, T. J. Humanic, N. Hussain, T. Hussain, D. Hutter, Dae Sung Hwang, R. Ilkaev, M. Inaba, M. Ippolitov, M. Irfan, В. В. Исаков, M. S. Islam, M. Ivanov, V. Ivanov, V. Izucheev, B. Jacak, N. Jacazio, P. Jacobs, M. B. Jadhav, S. Jadlovska, J. Jadlovsky, S. Jaelani, C. Jahnke, Monika Joanna Jakubowska, M. A. Janik, P. H. S. Y. Jayarathna, C. Jena, S. Jena, M. Jercic, R. T. Jimenez Bustamante, P. G. Jones, A. Jusko, P. Kaliňák, Alexander Philipp Kalweit, J. H. Kang, V. Kaplin, S. Kar, A. Karasu Uysal, O. Karavichev, T. Karavicheva, L. Karayan, E. Karpechev, U. Kebschull, R. Keidel, D. L. D. Keijdener, M. Keil, B. Ketzer, M. Mohisin Khan, P. Khan, S. Khan, A. Khanzadeev, Y. Kharlov, A. Khatun, A. Khuntia, M. M. Kielbowicz, B. Kileng, D. Kim, D. W. Kim, D. J. Kim, H. Kim, J. S. Kim, J. Kim, M. Kim, S. Kim, T. Kim, S. Kirsch, I. Kisel, S. Kiselev, A. Kisiel, G. Kiss, J. L. Klay, C. Klein, J. Klein, C. Klein-Bösing, S. Klewin, Alexander Kluge, M. L. Knichel, A. G. Knospe, C. Kobdaj, M. Kofarago, T. Kollegger, A. Kolojvari, V. Kondratiev, N. Kondratyeva, E. Kondratyuk, A. Konevskikh, M. Kopčík, M. Kour, C. Kouzinopoulos, O. Kovalenko, В. Коваленко, M. Kowalski, G. Koyithatta Meethaleveedu, I. Králik, A. Kravčáková, M. Krivda, F. Křížek, E. Kryshen, M. Krzewicki, A. M. Kubera, V. Kučera, C. Kuhn, Paulus Gerardus Kuijer, Ashwini Kumar, J. Kumar, L. Kumar, S. Kumar, S. Kundu, P. Kurashvili, A. Kurepin, A. Kuryakin, S. Kushpil, M. J. Kweon, Y. Kwon, S. L. La Pointe, P. La Rocca, C. Lagana Fernandes, I. Lakomov, R. Langoy, K. Lapidus, C. Lara, A. Lardeux, A. Lattuca, E. Laudi, R. Lavicka, L. Lazaridis, R. Lea, L. Leardini, S. Lee, F. Lehas, S. Lehner, J. Lehrbach, R. C. Lemmon, V. Lenti, E. Leogrande, I. Léon Monźon, P. Lévai, S. Li, X. Li, J. Lien, R. Lietava, S. Lindal, V. Lindenstruth, C. Lippmann, M. A. Lisa, V. Litichevskyi, H. M. Ljunggren, W. J. Llope, D. F. Lodato, P. I. Loenne, V. Loginov, C. Loizides, P. Lončar, X. Lopez, E. López Torres, A. J. Lowe, P. Luettig, M. Lunardon, G. Luparello, M. Lupi, T. H. Lutz, A. Maevskaya, M. Mager, S. Mahajan, S. M. Mahmood, A. Maire, R. 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Shabanov, A. Shabetai, O. Shadura, R. Shahoyan, A. Shangaraev, A. Sharma, Mukesh Kumar Sharma, N. Sharma, A. I. Sheikh, K. Shigaki, Q. Shou, K. Shtejer, Y. Sibiriak, S. Siddhanta, K. M. Sielewicz, T. Siemiarczuk, D. Silvermyr, C. Silvestre, G. Simatovic, G. Simonetti, R. Singaraju, R. Singh, V. Singhal, T. Sinha, B. Sitár, M. Sitta, T. B. Skaali, M. Słupecki, N. Smirnov, Raimond Snellings, T. W. Snellman, J. Song, M. Song, F. Soramel, S. Sörensen, F. Sozzi, E. Spiriti, I. Sputowska, B. Srivastava, J. Stachel, I. Stan, P. W. Stankus, E. Stenlund, J. H. Stiller, D. Stocco, P. Strmeň, Alexandre Alarcon Do Passo Suaide, T. Sugitate, C. Suire, M. Suleymanov, M. Šuljić, R. Sultanov, M. Šumbera, S. Sumowidagdo, K. Suzuki, S. K. Swain, A. Szabó, I. Szarka, A. Szczepankiewicz, M. Szymański, U. Tabassam, J. Takahashi, Ganesh Jagannath Tambave, N. Tanaka, M. Tarhini, Mohammad Tariq, M. G. Târzilă, A. Tauro, G. Tejeda Muñoz, A. Telesca, K. Terasaki, C. Terrevoli, B. Teyssier, D. Thakur, S. 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