Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: PHENIX
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PHENIX
Phenotypic Integration Index
7 versions
Latest release: over 7 years ago
1 dependent package
161 downloads last month
Papers Mentioning PHENIX 2,287
10.18632/oncotarget.14780
The conformational changes of Zika virus methyltransferase upon converting SAM to SAHCited by: 23
Author(s): Hailiang Zhou, Fenghua Wang, Haofeng Wang, Cheng Chen, Tianqing Zhang, Xu Han, Deping Wang, Chen Chen, Chunlei Wu, Wei Xie, Zefang Wang, Lei Zhang, Lanfeng Wang, Haitao Yang
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-018-35754-0
High resolution X-ray and NMR structural study of human T-cell immunoglobulin and mucin domain containing protein-3Cited by: 28
Author(s): Amit Gandhi, Walter M. Kim, Zhenyu Sun, Yu‐Hwa Huang, Daniel A. Bonsor, Eric J. Sundberg, Yasuyuki Kondo, Gerhard Wagner, Vijay K. Kuchroo, Gregory A. Petsko, Richard S. Blumberg
Software Mentions: 1
Published: almost 6 years ago
10.3390/membranes11070459
The Det.Belt Server: A Tool to Visualize and Estimate Amphipathic Solvent Belts around Membrane ProteinsCited by: 2
Author(s): Veronica Zampieri, Cécile Hilpert, Mélanie Garnier, Yannick Gestin, Sébastien Delolme, Juliette Martin, Pierre Falson, Guillaume Launay, Vincent Chaptal
Software Mentions: 1
Published: over 3 years ago
10.15698/mic2017.12.602
Aminoglycoside resistance profile and structural architecture of the aminoglycoside acetyltransferase AAC(6’)-ImCited by: 10
Author(s): Clyde A. Smith, Monolekha Bhattacharya, Márta Tóth, Nichole K. Stewart, Sergei B. Vakulenko
Software Mentions: 1
Published: almost 7 years ago
10.1107/S139900471401606X
Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonucleaseCited by: 10
Author(s): Chen Shao, Chengliang Wang, Jianye Zang
Software Mentions: 1
Published: about 10 years ago
10.1002/mbo3.373
Exploring the mechanisms of action of human secretory<scp>RN</scp>ase 3 and<scp>RN</scp>ase 7 against<i>Candida albicans</i>Cited by: 23
Author(s): Vivian A. Salazar, Javier Arranz‐Trullén, Susanna Navarro, José Blanco, Daniel O. Sánchez, Mohammed Moussaoui, Ester Boix
Software Mentions: 1
Published: over 8 years ago
10.1002/mbo3.254
Patterns of structural and sequence variation within isotype lineages of the <i>Neisseria meningitidis</i> transferrin receptor systemCited by: 17
Author(s): Paul Adamiak, Charles Calmettes, Trevor F. Moraes, Anthony B. Schryvers
Software Mentions: 1
Published: over 9 years ago
10.1002/mbo3.753
The role of the tyrosine kinase Wzc (Sll0923) and the phosphatase Wzb (Slr0328) in the production of extracellular polymeric substances (EPS) by <i>Synechocystis</i> PCC 6803Cited by: 22
Author(s): Sara B. Pereira, Marina Santos, José P. Leite, Carlos Flores, Carina Eisfeld, Zsófia Büttel, Rita Mota, Federico Rossi, Roberto De Philippis, J.H. Morais-Cabral, Paula Tamagnini
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40168-018-0421-8
“Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion systemCited by: 31
Author(s): Adrian E. Naas, Lindsey Solden, Angela D. Norbeck, Heather M. Brewer, Live Heldal Hagen, Ingrid Marie Høimyr Heggenes, Alice C. McHardy, Roderick I. Mackie, Ljiljana Paša‐Tolić, Magnus Ø. Arntzen, Vincent G. H. Eijsink, Nicole M. Koropatkin, Matthias Hess, Kelly Wrighton, Phillip B. Pope
Software Mentions: 1
Published: over 6 years ago
10.3390/microorganisms8060943
Cryo-EM Structure and Molecular Dynamics Analysis of the Fluoroquinolone Resistant Mutant of the AcrB Transporter from SalmonellaCited by: 22
Author(s): Rachel M. Johnson, Chiara Fais, Mayuriben J. Parmar, Harish Cheruvara, Robert L. Marshall, Sophie J. Hesketh, Matthew C. Feasey, Paolo Ruggerone, Attilio Vittorio Vargiu, Vincent L. G. Postis, Stephen P. Muench, Vassiliy N. Bavro
Software Mentions: 1
Published: over 4 years ago
10.1016/j.molcel.2017.06.010
Structure of Full-Length SMC and Rearrangements Required for Chromosome OrganizationCited by: 145
Author(s): Marie-Laure Diebold-Durand, Hansol Lee, Laura B. Ruiz Avila, Haemin Noh, Hang‐Sik Shin, Haeri Im, Florian Patrick Bock, Frank Bürmann, A. Durand, Alrun Basfeld, Sihyun Ham, J. Basquin, Byung‐Ha Oh, Stephan Gruber
Software Mentions: 1
Published: over 7 years ago
10.1107/S2053230X17016272
Meditope–Fab interaction: threading the holeCited by: 1
Author(s): K.P. Bzymek, Yuelong Ma, Kendra N. Avery, David Horne, John C. Williams
Software Mentions: 1
Published: about 7 years ago
10.1016/j.molcel.2019.01.035
FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin CondensatesCited by: 207
Author(s): Eleonora Turco, Marie Witt, Christine Abert, Tobias Bock-Bierbaum, Ming Jai Su, Riccardo Trapannone, Martin Sztacho, Alberto Danieli, Xiaoshan Shi, Gabriele Zaffagnini, Annamaria Gamper, Martina Schuschnig, Dorotea Fracchiolla, Daniel Bernklau, Julia Romanov, Markus Hartl, James H. Hurley, Oliver Daumke, Sascha Martens
Software Mentions: 1
Published: over 5 years ago
10.1016/j.molcel.2018.05.011
A Mechanism for the Activation of the Influenza Virus TranscriptaseCited by: 38
Author(s): I. Serna Martin, Narin Hengrung, Max Renner, Jane Sharps, Maira Martínez-Alonso, Simonas Masiulis, Jonathan M. Grimes, Ervin Fodor
Software Mentions: 1
Published: over 6 years ago
10.1016/j.molcel.2019.04.020
Structure of the DNA-Bound Spacer Capture Complex of a Type II CRISPR-Cas SystemCited by: 34
Author(s): M. K. Wilkinson, Gediminas Drabavicius, Arūnas Šilanskas, Giedrius Gasiūnas, Virginijus Šikšnys, Dale B. Wigley
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.66657
Structure-guided microbial targeting of antistaphylococcal prodrugsCited by: 7
Author(s): Jenna Miller, Ishaan Shah, Jayda Hatten, Yasaman Barekatain, Elizabeth A. Mueller, Ahmed Moustafa, Rachel L. Edwards, Cynthia S. Dowd, Paul J. Planet, Florian Müller, Joseph M. Jez, Audrey Odom John
Software Mentions: 1
Published: over 3 years ago
10.1107/S1399004713034603
Hitting the target: fragment screening with acoustic<i>in situ</i>co-crystallization of proteins plus fragment libraries on pin-mounted data-collection micromeshesCited by: 40
Author(s): Xingyu Yin, A. Scalia, Ludmila Leroy, Christina M. Cuttitta, G.M. Polizzo, Daniel L. Ericson, Christian G. Roessler, O. Campos, Y. Millie, Rashmi Agarwal, R. Jackimowicz, Marc Allaire, Allen M. Orville, Robert M. Sweet, Alexei S. Soares
Software Mentions: 1
Published: over 10 years ago
10.1016/j.molcel.2020.10.031
ISRIB Blunts the Integrated Stress Response by Allosterically Antagonising the Inhibitory Effect of Phosphorylated eIF2 on eIF2BCited by: 71
Author(s): Alisa Zyryanova, Kazuhiro Kashiwagi, Cláudia Rato, Heather P. Harding, Ana Crespillo-Casado, Luke A. Perera, Ayako Sakamoto, Madoka Nishimoto, Mayumi Yonemochi, Mikako Shirouzu, Takuhiro Ito, David Ron
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-018-37417-6
Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan bindingCited by: 26
Author(s): Magdalena Płotka, Enea Sancho‐Vaello, Sebastian Dorawa, Anna-Karina Kaczorowska, Łukasz P. Kozłowski, Tadeusz Kaczorowski, Kornelius Zeth
Software Mentions: 1
Published: almost 6 years ago
10.1107/S2053230X19001213
Substrate-analogue complex structure of <i>Mycobacterium tuberculosis</i> decaprenyl diphosphate synthaseCited by: 8
Author(s): Tzu Ping Ko, Xiansha Xiao, Rey‐Ting Guo, Jian Huang, Weidong Liu, Chun‐Chi Chen
Software Mentions: 1
Published: over 5 years ago
10.1107/S2053230X15012121
Structural analysis ofClostridium acetobutylicumATCC 824 glycoside hydrolase from CAZy family GH105Cited by: 1
Author(s): Katherine L. Germane, Matthew D. Servinsky, Elliot S. Gerlach, Christian Sund, Margaret M. Hurley
Software Mentions: 1
Published: over 9 years ago
10.7554/eLife.31486
Pi-Pi contacts are an overlooked protein feature relevant to phase separationCited by: 517
Author(s): Robert Vernon, P. Andrew Chong, Brian Tsang, Tae Hun Kim, Alaji Bah, Patrick Farber, Hong Lin, Julie D. Forman‐Kay
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.molcel.2018.10.012
Cryo-EM Structures of MDA5-dsRNA Filaments at Different Stages of ATP HydrolysisCited by: 46
Author(s): Qin Yu, Kun Qu, Yorgo Modis
Software Mentions: 1
Published: almost 6 years ago
10.7554/eLife.11297
Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alphaCited by: 34
Author(s): Janine Weber, Han Bao, Christoph Hartlmüller, Zhiqin Wang, Almut Windhager, Robert Janowski, Tobias Madl, Peng Jin, Dierk Niessing
Software Mentions: 1
Published: almost 9 years ago
10.1107/S1399004714016289
Metrics for comparison of crystallographic mapsCited by: 28
Author(s): Alexandre Urzhumtsev, Pavel V. Afonine, Vladimir Y. Lunin, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 1
Published: about 10 years ago
10.3390/molecules25102313
Evaluation of Bronopol and Disulfiram as Potential Candidatus Liberibacter asiaticus Inosine 5′-Monophosphate Dehydrogenase Inhibitors by Using Molecular Docking and Enzyme KineticCited by: 3
Author(s): Jing Nan, Shaoran Zhang, Ping Zhan, Ling Jiang
Software Mentions: 1
Published: over 4 years ago
10.3390/molecules200610848
Molecular Cloning, Carbohydrate Specificity and the Crystal Structure of Two Sclerotium rolfsii Lectin VariantsCited by: 9
Author(s): V.I. Peppa, Hemalatha Venkat, A.L. Kantsadi, Shashikala R. Inamdar, Ganapati Bhat, Sachin M. Eligar, Anupama Shivanand, Vishwanath B. Chachadi, Gonchigar J. Satisha, Bale M. Swamy, Vassiliki T. Skamnaki, S.E. Zographos, D.D. Leonidas
Software Mentions: 1
Published: over 9 years ago
10.3390/molecules25102295
High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine RiboswitchCited by: 9
Author(s): M.M. Matyjasik, Simone D Hall, Robert T. Batey
Software Mentions: 1
Published: over 4 years ago
10.3390/molecules24234309
Concepts and Core Principles of Fragment-Based Drug DesignCited by: 96
Author(s): Philine Kirsch, Alwin M. Hartman, A. Hirsch, Martin Empting
Software Mentions: 1
Published: almost 5 years ago
10.3390/molecules23010032
Structural Basis for the Substrate Inhibition of Proline Utilization A by ProlineCited by: 9
Author(s): David A. Korasick, T.A. Pemberton, Benjamin W. Arentson, Donald F. Becker, John J. Tanner
Software Mentions: 1
Published: almost 7 years ago
10.3390/molecules25071760
Biophysical Screens Identify Fragments That Bind to the Viral DNA-Binding Proteins EBNA1 and LANACited by: 9
Author(s): Troy E. Messick, Lois Tolvinski, Edward R. Zartler, Anna Moberg, Åsa Frostell, Garry R. Smith, Allen B. Reitz, Paul M. Lieberman
Software Mentions: 1
Published: over 4 years ago
10.3390/molecules24193507
Promutagenicity of 8-Chloroguanine, A Major Inflammation-Induced Halogenated DNA LesionCited by: 15
Author(s): Yi Kou, Myong Chul Koag, Seongmin Lee
Software Mentions: 1
Published: about 5 years ago
10.1107/S1399004715015011
A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditionsCited by: 73
Author(s): Thomas D. Murray, A.Y. Lyubimov, Craig M. Ogata, Huy T. Vo, Monarin Uervirojnangkoorn, Axel T. Brunger, James M. Berger
Software Mentions: 1
Published: about 9 years ago
10.3390/molecules18055706
Virtual Screening and Structure-Based Discovery of Indole Acylguanidines as Potent β-secretase (BACE1) InhibitorsCited by: 22
Author(s): Yiquan Zou, Li Li, Wuyan Chen, Tiantian Chen, Li Ma, Xin Wang, Bing Xiong, Yechun Xu, Jingkang Shen
Software Mentions: 1
Published: over 11 years ago
10.1107/S139900471400947X
Structural basis of the heterodimerization of the MST and RASSF SARAH domains in the Hippo signalling pathwayCited by: 42
Author(s): Eunha Hwang, Hae‐Kap Cheong, Ameeq Ul Mushtaq, Hye Yeon Kim, Kwon Joo Yeo, Eun‐Hee Kim, Woo Cheol Lee, Kwang Yeon Hwang, Chaejoon Cheong, Young Ho Jeon
Software Mentions: 1
Published: over 10 years ago
10.3390/molecules26040946
A Rationale for Drug Design Provided by Co-Crystal Structure of IC261 in Complex with TubulinCited by: 4
Author(s): Jinghong Xian, Faqian Bu, Yuxi Wang, Fangyi Long, Zhixiong Zhang, Chengyong Wu, Yiran Tao, Ting Wang, Guan Wang
Software Mentions: 1
Published: almost 4 years ago
10.3390/molecules191221113
Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus vannameiCited by: 5
Author(s): A.A. Campos-Acevedo, E. Rudiño-Piñera
Software Mentions: 1
Published: almost 10 years ago
10.3390/molecules26051225
Phage-Display Based Discovery and Characterization of Peptide Ligands against WDR5Cited by: 3
Author(s): Jiawen Cao, Tiantian Fan, Yanlian Li, Zhimin Du, Lin Chen, Ying Wang, Xin Wang, Jingkang Shen, Xun Huang, Bing Xiong, Danyan Cao
Software Mentions: 1
Published: over 3 years ago
10.1016/j.molimm.2019.04.026
The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virusCited by: 10
Author(s): Jingshan Ren, Joanne E. Nettleship, Gemma Harris, William Mwangi, N. Rhaman, Clare F. J. Grant, Abhay Kotecha, Elizabeth E. Fry, Bryan Charleston, D.I. Stuart, John A. Hammond, Raymond J. Owens
Software Mentions: 1
Published: over 5 years ago
10.1107/S2053230X1900904X
The crystal structure of haemoglobin from Atlantic codCited by: 0
Author(s): Ronny Helland, Eva katrin Bjørkeng, U. Rothweiler, Magne O. Sydnes, Daniela M. Pampanin
Software Mentions: 1
Published: over 5 years ago
10.1107/S2053230X18002819
Crystal structure of an inferred ancestral bacterial pyruvate decarboxylaseCited by: 3
Author(s): Lisa Buddrus, Emma Sophie Vout Andrews, David J. Leak, Michael J. Danson, Vickery L. Arcus, S.J. Crennell
Software Mentions: 1
Published: over 6 years ago
10.1107/S2053230X16014011
Comparative analysis of anti-polyglutamine Fab crystals grown on Earth and in microgravityCited by: 3
Author(s): Gwen E. Owens, Danielle M. New, Alejandra I. Olvera, Julia Ashlyn Manzella, Brittney L. Macon, Joshua Dunn, David A. Cooper, Robyn L. Rouleau, Daniel S. Connor, Pamela J. Björkman
Software Mentions: 1
Published: about 8 years ago
10.1111/mmi.13876
FzlA, an essential regulator of FtsZ filament curvature, controls constriction rate during<i>Caulobacter</i>divisionCited by: 20
Author(s): Patrick J. Lariviere, Piotr Szwedziak, Christopher R. Mahone, Jan Löwe, Erin D. Goley
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-019-39687-0
Biochemical and structural characterization of tomato polyphenol oxidases provide novel insights into their substrate specificityCited by: 34
Author(s): Ioannis Kampatsikas, Aleksandar Bijelic, Annette Rompel
Software Mentions: 1
Published: over 5 years ago
10.15252/msb.20156701
Predictive features of ligand‐specific signaling through the estrogen receptorCited by: 39
Author(s): Jerome C. Nwachukwu, Sathish Srinivasan, Yangfan Zheng, Song Wang, Jian Min, Chune Dong, Zongquan Liao, J. Nowak, Nicholas J. Wright, René Houtman, Kathryn E. Carlson, J.S. Josan, Olivier Elemento, John A. Katzenellenbogen, Hai-Bing Zhou, K.W. Nettles
Software Mentions: 1
Published: over 8 years ago
10.3390/vaccines9040322
Structure, Immunoreactivity, and In Silico Epitope Determination of SmSPI S. mansoni Serpin for Immunodiagnostic ApplicationCited by: 3
Author(s): S. De Benedetti, F. Di Pisa, Enrico M. A. Fassi, Marina Cretich, Angelo Musicò, Roberto Frigerio, Alessandro Mussida, Mauro Bombaci, Renata Grifantini, Giorgio Colombo, Martino Bolognesi, Romualdo Grande, Nadia Zanchetta, Maria Rita Gismondo, Davide Mileto, Alessandro Mancon, L.J. Gourlay
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-40937-4
An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B CellsCited by: 12
Author(s): Cheng-Chung Lee, Chih-Ya Yang, Long-Yau Lin, Tzu‐Ping Ko, Alarng Hsun-Lang Chang, Stanley Shi-Chung Chang, Andrew H.‐J. Wang
Software Mentions: 1
Published: over 5 years ago
10.1016/j.virol.2013.08.010
Changes in the hemagglutinin of H5N1 viruses during human infection – Influence on receptor bindingCited by: 29
Author(s): Martín Crusat, Junfeng Liu, Angelina S. Palma, Robert A. Childs, Yan Liu, Steve Wharton, Yi Pu Lin, P.J. Coombs, Stephen R. Martin, Mikhail Matrosovich, Ziqiang Chen, David Stevens, Vo Minh Hien, Tran Tan Thanh, Le Nguyen Truc Nhu, Lam Anh Nguyet, Do Quang Ha, H. Rogier van Doorn, Tran Tinh Hien, Harald S. Conradt, Makoto Kiso, S.J. Gamblin, Wengang Chai, J.J. Skehel, Alan J. Hay, Jeremy Farrar, Menno D. de Jong, Ten Feizi
Software Mentions: 1
Published: almost 11 years ago
10.1093/ve/veaa023
Structure of a filamentous virus uncovers familial ties within the archaeal virosphereCited by: 11
Author(s): Fengbin Wang, Diana P. Baquero, Zhangli Su, T. Osinski, David Prangishvili, Edward H. Egelman, Mart Krupovìč
Software Mentions: 1
Published: almost 5 years ago
10.3390/v4040447
Structural Basis for Differential Neutralization of EbolavirusesCited by: 63
Author(s): Shridhar Bale, João M. Dias, Marnie L. Fusco, Takao Hanabusa, Anthony Wong, Tong Liu, Ana I. Keuhne, Li Sheng, Virgil L. Woods, Kartik Chandran, John M. Dye, Erica Ollmann Saphire
Software Mentions: 1
Published: over 12 years ago
10.3390/v7082839
Structure and Biophysical Properties of a Triple-Stranded Beta-Helix Comprising the Central Spike of Bacteriophage T4Cited by: 8
Author(s): S.A. Buth, Laure Menin, Mikhail M. Shneider, Juergen Engel, Sergei P. Boudko, P.G. Leiman
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-019-40879-x
Crystal structure and epitope analysis of house dust mite allergen Der f 21Cited by: 13
Author(s): Sze Lei Pang, Ken Ho, Jitka Waterman, Robert P. Rambo, Aik-Hong Teh, Indran Mathavan, Gemma Harris, Konstantinos Beis, Yee‐How Say, Matta Sri Anusha, Yang Yie Sio, Fook Tim Chew, Chyan Leong Ng
Software Mentions: 1
Published: over 5 years ago
10.3390/v9100305
Structural and Functional Insight into Canarypox Virus CNP058 Mediated Regulation of ApoptosisCited by: 21
Author(s): Mohd Ishtiaq Anasir, Amy A. Baxter, Ivan K. H. Poon, Mark D. Hulett, Marc Kvansakul
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-019-41354-3
Structural determinants of inhibition of Porphyromonas gingivalis gingipain K by KYT-36, a potent, selective, and bioavailable peptidase inhibitorCited by: 14
Author(s): Tibisay Guevara, Arturo Rodríguez-Banqueri, Anna M. Łasica, Mirosław Książek, Barbara Potempa, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 5 years ago
10.3390/v9110335
Crystal Structure of the Full-Length Feline Immunodeficiency Virus Capsid Protein Shows an N-Terminal β-Hairpin in the Absence of N-Terminal ProlineCited by: 10
Author(s): Christelle Folio, Natalia Sierra, Marie Dujardin, Guzmán Álvarez, Christophe Guillon
Software Mentions: 1
Published: about 7 years ago
10.3390/v10080427
Structure and Analysis of R1 and R2 Pyocin Receptor-Binding FibersCited by: 32
Author(s): S.A. Buth, Mikhail M. Shneider, Dean Scholl, P.G. Leiman
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.14158
Viral hijacking of a replicative helicase loader and its implications for helicase loading control and phage replicationCited by: 14
Author(s): Iris V. Hood, James M. Berger
Software Mentions: 1
Published: over 8 years ago
10.3390/v11090789
Crystal Structure of African Swine Fever Virus A179L with the Autophagy Regulator BeclinCited by: 31
Author(s): Suresh Banjara, Gareth Shimmon, Linda K. Dixon, Christopher L. Netherton, Mark G. Hinds, Marc Kvansakul
Software Mentions: 1
Published: about 5 years ago
10.3390/v12030326
Structural and Functional Characterization of the Secondary Mutation N126K Selected by Various HIV-1 Fusion InhibitorsCited by: 1
Author(s): Danwei Yu, Yang Sai, Xiaohui Ding, Yuanmei Zhu, Bo Qin, Huihui Chong, Sheng Cui, Yuxian He
Software Mentions: 1
Published: over 4 years ago
10.3390/v12060653
Structural Characterization of Cuta- and Tusavirus: Insight into Protoparvoviruses Capsid MorphologyCited by: 8
Author(s): Mario Mietzsch, Robert McKenna, Elina Väisänen, Jennifer C. Yu, Maria Ilyas, Joshua A. Hull, Justin Kurian, J. W. G. Smith, Paul R. Chipman, Yi Lasanajak, David F. Smith, Maria Söderlund‐Venermo, Mavis Agbandje‐McKenna
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-019-41498-2
Position 123 of halohydrin dehalogenase HheG plays an important role in stability, activity, and enantioselectivityCited by: 12
Author(s): Jennifer Solarczek, Thomas Klünemann, Felix Brandt, Patrick Schrepfer, Mario Wolter, Christoph R. Jacob, Wulf Blankenfeldt, Anett Schallmey
Software Mentions: 1
Published: over 5 years ago
10.3390/v12101075
Binding Mechanism Elucidation of the Acute Respiratory Disease Causing Agent Adenovirus of Serotype 7 to Desmoglein-2Cited by: 5
Author(s): Marc-André Hograindleur, Grégory Effantin, Daphna Fenel, Caroline Mas, André Lieber, Guy Schoehn, Pascal Fender, Émilie Vassal-Stermann
Software Mentions: 1
Published: about 4 years ago
10.7554/eLife.26111
A widespread family of serine/threonine protein phosphatases shares a common regulatory switch with proteasomal proteasesCited by: 23
Author(s): Niels Bradshaw, V.M. Levdikov, Christina M. Zimanyi, Rachelle Gaudet, Anthony J. Wilkinson, Richard Losick
Software Mentions: 1
Published: over 7 years ago
10.3390/v13020330
Characterization of the GBoV1 Capsid and Its Antibody InteractionsCited by: 6
Author(s): Jennifer C. Yu, Mario Mietzsch, Amriti Singh, Alberto Jimenez Ybargollin, Shweta Kailasan, Paul R. Chipman, Nilakshee Bhattacharya, Julia Fakhiri, Dirk Grimm, Amit Kapoor, Indrė Kučinskaitė-Kodzė, Aurelija Žvirblienė, Maria Söderlund‐Venermo, Robert McKenna, Mavis Agbandje‐McKenna
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-019-43577-w
Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coliCited by: 12
Author(s): Xiaolin Shen, Da‐Yong Zhou, Yuheng Lin, Jia Wang, Shuaihua Gao, P. Kandavelu, Hua Zhang, Ruihua Zhang, Bi-Cheng Wang, John P. Rose, Qipeng Yuan, Yajun Yan
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-43932-x
Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoproteinCited by: 18
Author(s): Mariano Genera, Diana Samson, Bertrand Raynal, Ahmed Haouz, Bruno Baron, Catherine Simenel, Raphaël Guérois, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-44108-3
FABP1 controls hepatic transport and biotransformation of Δ9-THCCited by: 15
Author(s): Matthew W. Elmes, Lauren E. Prentis, L.L. McGoldrick, Christopher J. Giuliano, Joseph Sweeney, Olivia M. Joseph, Joyce Che, Gregory Carbonetti, Keith M. Studholme, Dale G. Deutsch, Robert C. Rizzo, Steven E. Glynn, Martin Kaczocha
Software Mentions: 1
Published: over 5 years ago
10.1128/JVI.02005-19
Structure and Characterization of Crimean-Congo Hemorrhagic Fever Virus GP38Cited by: 18
Author(s): Akaash K. Mishra, Crystal L. Moyer, Dafna M. Abelson, Daniel J. Deer, Kamel El Omari, Ramona Duman, Leslie Lobel, Julius J. Lutwama, John M. Dye, Armin Wagner, Kartik Chandran, Robert W. Cross, Thomas W. Geisbert, Larry Zeitlin, Zachary A. Bornholdt, Jason S. McLellan
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-019-44943-4
Recombinant production, purification, crystallization, and structure analysis of human transforming growth factor β2 in a new conformationCited by: 7
Author(s): Laura del Amo-Maestro, Laura Marino‐Puertas, Theodoros Goulas, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.9408
Conformational heterogeneity of Savinase from NMR, HDX-MS and X-ray diffraction analysisCited by: 3
Author(s): Shanshan Wu, Tam T. T. N. Nguyen, Olga V. Moroz, J.P. Turkenburg, Jens Erik Nielsen, K.S. Wilson, Kasper D. Rand, Kaare Teilum
Software Mentions: 1
Published: over 4 years ago
10.1107/S2053230X14000582
Crystallization and preliminary X-ray crystallographic analysis of latent isoform PPO4 mushroom (<i>Agaricus bisporus)</i>tyrosinaseCited by: 54
Author(s): S.G. Mauracher, Christian Molitor, Rami Al‐Oweini, Ulrich Kortz, Annette Rompel
Software Mentions: 1
Published: almost 11 years ago
10.7717/peerj.305
Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB)Cited by: 7
Author(s): Amar Joshi, Vicent Esteve, Adrian Buckroyd, Markus Blatter, Frédéric H.‐T. Allain, Stephen Curry
Software Mentions: 1
Published: over 10 years ago
10.7717/peerj.10974
Forbidden links, trait matching and modularity in plant-hummingbird networks: Are specialized modules characterized by higher phenotypic floral integration?Cited by: 4
Author(s): Jaume Izquierdo-Palma, María del Coro Arizmendi, Carlos Lara, Juan Francisco Ornelas
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.1858
Characterisation of<i>Schizosaccharomyces pombe α</i>-actininCited by: 7
Author(s): Barbara Addario, Linda Sandblad, Karina Persson, Lars Backman
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.5815
C9orf72, a protein associated with amyotrophic lateral sclerosis (ALS) is a guanine nucleotide exchange factorCited by: 43
Author(s): Shalini Iyer, Vasanta Subramanian, K. Ravi Acharya
Software Mentions: 1
Published: about 6 years ago
10.3390/ph11010023
A π-Halogen Bond of Dibenzofuranones with the Gatekeeper Phe113 in Human Protein Kinase CK2 Leads to Potent Tight Binding InhibitorsCited by: 6
Author(s): Alexander Schnitzler, Andreas Gratz, Andre Bollacke, Michael Weyrich, Uwe Kuckländer, Bernhard Wünsch, Claudia Götz, Karsten Niefind, Joachim Jose
Software Mentions: 1
Published: almost 7 years ago
10.3390/ph10010009
Structural Hypervariability of the Two Human Protein Kinase CK2 Catalytic Subunit Paralogs Revealed by Complex Structures with a Flavonol- and a Thieno[2,3-d]pyrimidine-Based InhibitorCited by: 11
Author(s): Karsten Niefind, N. Bischoff, Andriy G. Golub, Volodymyr G. Bdzhola, A.O. Balanda, A.O. Prykhod'ko, S. M. Yarmoluk
Software Mentions: 1
Published: almost 8 years ago
10.3390/ph10040098
Unexpected Binding Mode of a Potent Indeno[1,2-b]indole-Type Inhibitor of Protein Kinase CK2 Revealed by Complex Structures with the Catalytic Subunit CK2α and Its Paralog CK2α′Cited by: 13
Author(s): Jennifer Hochscherf, D. Lindenblatt, B. Witulski, Robin Birus, Dagmar Aichele, Christelle Marminon, Zouhair Bouaziz, Marc Le Borgne, Joachim Jose, Karsten Niefind
Software Mentions: 1
Published: almost 7 years ago
10.1098/rsta.2018.0422
Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mappingCited by: 26
Author(s): S.E. Thomas, P. Collins, Rory Hennell James, V. Mendes, Sitthivut Charoensutthivarakul, Chris J. Radoux, Chris Abell, Anthony G. Coyne, Andres Floto, Frank von Delft, Tom L. Blundell
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.23223
The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA cappingCited by: 7
Author(s): Chatrin Chatrin, Sandeep K. Talapatra, Bruno Canard, Frank Kozielski
Software Mentions: 1
Published: almost 7 years ago
10.1093/pcp/pcv167
Identification of the Elusive Pyruvate Reductase of<i>Chlamydomonas reinhardtii</i>ChloroplastsCited by: 18
Author(s): Steven J. Burgess, Hussein Taha, Justin A. Yeoman, Oksana Iamshanova, Kher Xing Chan, Marko Boehm, Volker Behrends, Jacob G. Bundy, Wojciech Białek, James W. Murray, Peter J. Nixon
Software Mentions: 1
Published: about 9 years ago
10.1107/S2053230X17007713
The structure of a complex of the lactonohydrolase zearalenone hydrolase with the hydrolysis product of zearalenone at 1.60 Å resolutionCited by: 13
Author(s): Qi Qi, Wen Yang, Hu Zhou, Deng Ming, Kai Sun, Tao Xu, Xin Hu, Hong Liu
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pbio.3000780
Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomesCited by: 43
Author(s): Jennifer N. Wells, Robert Buschauer, Timur Mackens-Kiani, Katharina Best, Hanna Kratzat, Otto Berninghausen, Thomas Becker, Wendy V. Gilbert, Jingdong Cheng, Roland Beckmann
Software Mentions: 1
Published: over 4 years ago
10.1107/S0909049513020815
Fundamental studies for the proton polarization technique in neutron protein crystallographyCited by: 5
Author(s): Ichiro Tanaka, Katsuhiro Kusaka, Toshiyuki Chatake, Nobuo Nakabayashi
Software Mentions: 1
Published: about 11 years ago
10.1107/S2053230X17007439
Crystal structure of<i>N</i>-acetylmannosamine kinase from<i>Fusobacterium nucleatum</i>Cited by: 8
Author(s): Rhawnie Caing-Carlsson, Parveen Goyal, Amit Sharma, Swagatha Ghosh, Thanuja Gangi Setty, Rachel A. North, Rosmarie Friemann, S. Ramaswamy
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pbio.3000104
Spliceosomal Prp8 intein at the crossroads of protein and RNA splicingCited by: 25
Author(s): Cathleen M. Green, Zhong Li, Aaron D. Smith, О. С. Новікова, Valjean R. Bacot‐Davis, Gao Feng-shan, Saiyang Hu, Nilesh K. Banavali, Dennis J. Thiele, Hongmin Li, Marlene Belfort
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pbio.1001472
An Enzyme-Catalyzed Multistep DNA Refolding Mechanism in Hairpin Telomere FormationCited by: 14
Author(s): Ke Shi, Wai Mun Huang, Hideki Aihara
Software Mentions: 1
Published: almost 12 years ago
10.1038/s41598-019-48019-1
Exit tunnel modulation as resistance mechanism of S. aureus erythromycin resistant mutantCited by: 31
Author(s): Y. Halfon, Donna Matzov, Zohar Eyal, Anat Bashan, Ella Zimmerman, Jette Sejer Kjeldgaard, Hanne Ingmer, Ada Yonath
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pbio.1001678
Structure of UreG/UreF/UreH Complex Reveals How Urease Accessory Proteins Facilitate Maturation of Helicobacter pylori UreaseCited by: 87
Author(s): Y.H. Fong, Ho Chun Wong, Man Hon Yuen, Pak Ho Lau, Yu Wai Chen, Kam-Bo Wong
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pbio.3000260
Structures suggest a mechanism for energy coupling by a family of organic anion transportersCited by: 37
Author(s): Jonathan B. Leano, Samir Batarni, Jacob Eriksen, Narinobu Juge, John E. Pak, Tomomi Kimura‐Someya, Yaneth Robles-Colmenares, Yoshinori Moriyama, Robert M. Stroud, Robert H. Edwards
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48850-6
The complex structure of bile salt hydrolase from Lactobacillus salivarius reveals the structural basis of substrate specificityCited by: 13
Author(s): Fanxing Xu, Xiaojian Hu, Warispreet Singh, Wenjing Geng, Irina G. Tikhonova, Jun Lin
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pbio.1001750
The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κBCited by: 118
Author(s): Yasar Luqman Ahmed, Jennifer Gerke, Hee-Soo Park, Özgür Bayram, Piotr Neumann, Min Ni, Achim Dickmanns, Sun-Chang Kim, Jae‐Hyuk Yu, Gerhard H. Braus, Ralf Ficner
Software Mentions: 1
Published: almost 11 years ago
10.1107/S2053230X1601298X
1.65 Å resolution structure of the AraC-family transcriptional activator ToxT from<i>Vibrio cholerae</i>Cited by: 11
Author(s): Jiaqin Li, Graham T Wehmeyer, Scott Lovell, Kevin P. Battaile, Susan M. Egan
Software Mentions: 1
Published: about 8 years ago
10.1107/S2053230X1400884X
Crystallization and preliminary X-ray crystallographic analysis of polyphenol oxidase from<i>Juglans regia</i>(<i>jr</i>PPO1)Cited by: 18
Author(s): Florime Zekiri, Aleksandar Bijelic, Christian Molitor, Annette Rompel
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pbio.1002192
Single Turnover Autophosphorylation Cycle of the PKA RIIβ HoloenzymeCited by: 29
Author(s): Ping Zhang, Matthias J. Knape, Lalima G. Ahuja, Malik M. Keshwani, Charles C. King, Mira Sastri, Friedrich W. Herberg, Susan S. Taylor
Software Mentions: 1
Published: over 9 years ago
10.1107/S2053230X18017338
Iterative screen optimization maximizes the efficiency of macromolecular crystallizationCited by: 8
Author(s): Harrison G. Jones, Daniel Wrapp, M.S.A. Gilman, Michael B. Battles, Nianshuang Wang, Sofia Sacerdote, Gwo Yu Chuang, Peter D. Kwong, Jason S. McLellan
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pbio.3000748
Cryo-EM structure of the nonameric CsgG-CsgF complex and its implications for controlling curli biogenesis in EnterobacteriaceaeCited by: 9
Author(s): Manfeng Zhang, Huigang Shi, Xuemei Zhang, Xinzheng Zhang, Yihua Huang
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pbio.1002356
Dissecting the Molecular Mechanism of Nucleotide-Dependent Activation of the KtrAB K+ TransporterCited by: 18
Author(s): András Szöllősi, Ricardo S. Vieira-Pires, Celso M. Teixeira-Duarte, Rita Rocha, J.H. Morais-Cabral
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pbio.3001295
Structures of the human cholecystokinin 1 (CCK1) receptor bound to Gs and Gq mimetic proteins provide insight into mechanisms of G protein selectivityCited by: 35
Author(s): Jesse I. Mobbs, Matthew J. Belousoff, Kaleeckal G. Harikumar, Sarah Piper, Xiaomeng Xu, Sebastian G.B. Furness, Hari Venugopal, Arthur Christopoulos, Radostin Danev, Denise Wootten, David M. Thal, Laurence J. Miller, Patrick M. Sexton
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pbio.1001493
Mechanistic Insights Revealed by the Crystal Structure of a Histidine Kinase with Signal Transducer and Sensor DomainsCited by: 133
Author(s): Chen Wang, Jiayan Sang, Jiawei Wang, Ming-yan Su, Jennifer S. Downey, Qinggan Wu, Shida Wang, Yongfei Cai, Xiaozheng Xu, Jun Wu, Dilani B. Senadheera, Dennis G. Cvitkovitch, Lin Chen, Steven D. Goodman, Aidong Han
Software Mentions: 1
Published: over 11 years ago