cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0131523

Evidence for the Dimerization-Mediated Catalysis of Methionine Sulfoxide Reductase A from Clostridium oremlandii
Cited by: 6
Author(s): Eun Hye Lee, Kitaik Lee, Geun Hee Kwak, Yeon Seung Park, Kong Joo Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-018-28918-5

Crystal structure of an L chain optimised 14F7 anti-ganglioside Fv suggests a unique tumour-specificity through an unusual H-chain CDR3 architecture
Cited by: 6
Author(s): Kaare Bjerregaard-Andersen, Hedda Johannesen, Noha Abdel-Rahman, J.E. Heggelund, Helene Mykland Hoås, Fana Abraha, Paula A. Bousquet, Lene Støkken Høydahl, D. Burschowsky, Gertrudis Rojas, Stefan Oscarson, Geir Åge Løset, Ute Krengel
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-29500-9

Structural determinants of the catalytic mechanism of Plasmodium CCT, a key enzyme of malaria lipid biosynthesis
Cited by: 6
Author(s): Ewelina Guca, Gergely Nagy, F. Hajdu, Lívia Marton, Richárd Izrael, François Hoh, Yinshan Yang, Henri Vial, Beáta G. Vértessy, Jean-François Guichou, Rachel Cerdan
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0221975

Crystal structure of L-aspartate aminotransferase from Schizosaccharomyces pombe
Cited by: 5
Author(s): Soo Yeon Jeong, Hyeonseok Jin, Jeong Ho Chang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-29884-8

FliS/flagellin/FliW heterotrimer couples type III secretion and flagellin homeostasis
Cited by: 16
Author(s): Florian Altegoer, Sampriti Mukherjee, Wieland Steinchen, Patricia Bedrunka, Uwe Linne, Daniel B. Kearns, Gert Bange
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0199942

Crystal structure of the C-terminal four-helix bundle of the potassium channel KCa3.1
Cited by: 5
Author(s): Tianyang Ji, Senena Corbalán-Garcı́a, Stevan R. Hubbard
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0097475

Crystal Structure of the Open State of the Neisseria gonorrhoeae MtrE Outer Membrane Channel
Cited by: 49
Author(s): Hanlun Lei, Tsung‐Han Chou, Chih‐Chia Su, Jani Reddy Bolla, Nitin Kumar, Abhijith Radhakrishnan, Feng Long, Jared A. Delmar, V. L. Sylvia, Kanagalaghatta R. Rajashankar, William M. Shafer, Edward Yu
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0020505

Circular Permutation of Red Fluorescent Proteins
Cited by: 32
Author(s): Bo Shui, Qi Wang, Frank Lee, Laura J. Byrnes, Dmitriy M. Chudakov, Sergey Lukyanov, Holger Sondermann, Michael I. Kotlikoff
Software Mentions: 1
Published: about 15 years ago

10.1107/S1399004714017040

Continuous mutual improvement of macromolecular structure models in the PDB and of X-ray crystallographic software: the dual role of deposited experimental data
Cited by: 26
Author(s): Thomas C. Terwilliger, G. Bricogne
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12860-019-0213-4

CD40/anti-CD40 antibody complexes which illustrate agonist and antagonist structural switches
Cited by: 14
Author(s): M.A. Argiriadi, Lorenzo Benatuil, I. Dubrovska, David A. Egan, Lei Gao, Amy Greischar, Jennifer Hardman, John E. Harlan, Ramesh Iyer, Russell A. Judge, Marc Lake, Denise Perron, Ramkrishna Sadhukhan, Bernhard Sielaff, Silvino Sousa, Rui Wang, Bradford L. McRae
Software Mentions: 1
Published: about 7 years ago

10.1107/S1399004715008548

Structure of protease-cleaved<i>Escherichia coli</i>α-2-macroglobulin reveals a putative mechanism of conformational activation for protease entrapment
Cited by: 11
Author(s): Cameron David Fyfe, Rhys Grinter, Inokentijs Josts, Khédidja Mosbahi, A.W. Roszak, Richard J. Cogdell, Daniel M. Wall, Richard Burchmore, Olwyn Byron, Daniel Walker
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0044211

Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease
Cited by: 53
Author(s): Kathryn M. Hastie, Liam B. King, Michelle Zandonatti, Erica Ollmann Saphire
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12860-020-0249-5

A doublecortin-domain protein of Toxoplasma and its orthologues bind to and modify the structure and organization of tubulin polymers
Cited by: 26
Author(s): Jacqueline M. Leung, Eiji Nagayasu, Yu Chen Hwang, Jun Li, Phillip G. Pierce, Isabelle Phan, Robin Prentice, John M. Murray, Ke Hu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0149846

Crystal Structure of Alcohol Oxidase from Pichia pastoris
Cited by: 38
Author(s): Christian A. Koch, Piotr Neumann, Oliver Valerius, Ivo Feußner, Ralf Ficner
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0063047

N-Terminal Helix-Cap in α-Helix 2 Modulates β-State Misfolding in Rabbit and Hamster Prion Proteins
Cited by: 18
Author(s): Braden Sweeting, Eric D. Brown, Mashiat Khan, Avijit Chakrabartty, E.F. Pai
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-30191-5

Structural Analysis of Glutamine Synthetase from Helicobacter pylori
Cited by: 12
Author(s): Hyun Kyu Joo, Young Woo Park, Young Yoon Jang, Jae Young Lee
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0067901

Function and X-Ray crystal structure of Escherichia coli YfdE
Cited by: 11
Author(s): E.A. Mullins, Kelly L. Sullivan, T.J. Kappock
Software Mentions: 1
Published: about 13 years ago

10.1186/s12915-016-0298-6

Casitas B-lineage lymphoma linker helix mutations found in myeloproliferative neoplasms affect conformation
Cited by: 15
Author(s): Lori Buetow, Giancarlo Tria, Syed Feroj Ahmed, A. Höck, Haoran Dou, Gary Sibbet, Dmitri I. Svergun, Danny T. Huang
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0187295

Crystal structure of dipeptidyl peptidase III from the human gut symbiont Bacteroides thetaiotaomicron
Cited by: 14
Author(s): Igor Sabljić, Nevenka Meštrović, Bojana Vukelić, Peter Macheroux, Karl Gruber, Marija Luić, Marija Abramić
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0125946

Structural Basis Underlying the Binding Preference of Human Galectins-1, -3 and -7 for Galβ1-3/4GlcNAc
Cited by: 36
Author(s): T.J. Hsieh, Hong-Shiang Lin, Zhijay Tu, Bo-Shun Huang, Shang-Chuen Wu, Chun‐Hung Lin
Software Mentions: 1
Published: over 11 years ago

10.1186/s12915-018-0524-5

Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography
Cited by: 106
Author(s): J.L. Olmos, Suraj Pandey, José M. Martín-García, George D. Calvey, Andrea M. Katz, J. Knoška, Christopher Kupitz, Mark S. Hunter, Mao Liang, D. Oberthüer, Oleksandr Yefanov, Max O. Wiedorn, M. Heyman, Mark R. Holl, Kanupriya Pande, Anton Barty, Mitchell D. Miller, Stephan Stern, Shatabdi Roy-Chowdhury, Jesse Coe, Nirupa Nagaratnam, James Zook, Jacob Verburgt, Tyler Norwood, Ishwor Poudyal, David Xu, Jason E. Koglin, Matthew Seaberg, Yun Zhao, Saša Bajt, Thomas D. Grant, Valerio Mariani, Garrett Nelson, Ganesh Subramanian, Euiyoung Bae, Raimund Fromme, Russell Fung, Peter Schwander, Matthias Frank, Thomas A. White, Uwe Weierstall, Nadia A. Zatsepin, John C. H. Spence, Petra Fromme, Henry N. Chapman, Lois Pollack, L.W. Tremblay, A. Ourmazd, George N. Phillips, Marius Schmidt
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0074748

Structure of the NheA Component of the Nhe Toxin from Bacillus cereus: Implications for Function
Cited by: 57
Author(s): Magdah Ganash, Danh Phung, Svetlana E. Sedelnikova, Toril Lindbäck, Per Einar Granum, Peter J. Artymiuk
Software Mentions: 1
Published: almost 13 years ago

10.1107/S1399004713032987

The structure of an authentic spore photoproduct lesion in DNA suggests a basis for recognition
Cited by: 14
Author(s): Isha Singh, Yajun Lian, Lei Li, Millie M. Georgiadis
Software Mentions: 1
Published: over 12 years ago

10.1038/s41598-018-30951-3

Bonsai Gelsolin Survives Heat Induced Denaturation by Forming β-Amyloids which Leach Out Functional Monomer
Cited by: 12
Author(s): Maulik D. Badmalia, Pankaj Sharma, Shiv Pratap Singh Yadav, Samiksha Singh, Neeraj Khatri, Renu Garg, . Ashish
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12858-017-0082-4

Structural insight into the inactivation of Mycobacterium tuberculosis non-classical transpeptidase LdtMt2 by biapenem and tebipenem
Cited by: 39
Author(s): M.A. Bianchet, Ying Pan, Leighanne A. Brammer Basta, Harry Saavedra, Evan P. Lloyd, Priyanka Kumar, Rohini Mattoo, Craig A. Townsend, Gyanu Lamichhane
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-30796-w

Structural basis for polymerase η–promoted resistance to the anticancer nucleoside analog cytarabine
Cited by: 10
Author(s): Olga Rechkoblit, Jayati Roy Choudhury, Angeliki Buku, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0039688

Dimerization and Heme Binding Are Conserved in Amphibian and Starfish Homologues of the microRNA Processing Protein DGCR8
Cited by: 20
Author(s): Rachel Senturia, Arthur Laganowsky, Ian Barr, Brooke D. Scheidemantle, Feng Guo
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0211432

R pyocin tail fiber structure reveals a receptor-binding domain with a lectin fold
Cited by: 20
Author(s): Adam J. Salazar, Mukul Sherekar, Jennifer Tsai, James C. Sacchettini
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0084973

Comparative Structural and Functional Analysis of Orthomyxovirus Polymerase Cap-Snatching Domains
Cited by: 17
Author(s): Delphine Guilligay, Jan Kadlec, Thibaut Crépin, T. Lunardi, Denis Bouvier, Georg Kochs, Rob W.H. Ruigrok, Stephen Cusack
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0214481

Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com
Cited by: 4
Author(s): Martyna Nowacka, Humberto Fernandes, Agnieszka Kiliszek, Agata Bernat, Grzegorz Łach, Janusz M. Bujnicki
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-31098-x

Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus
Cited by: 11
Author(s): Erik R. Nöldeke, Lena M. Muckenfuss, Volker Niemann, Anna Müller, Elena Störk, Georg Zocher, Tanja Schneider, Thilo Stehle
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0122447

The 1.7 Å X-Ray Crystal Structure of the Porcine Factor VIII C2 Domain and Binding Analysis to Anti-Human C2 Domain Antibodies and Phospholipid Surfaces
Cited by: 8
Author(s): Caileen M. Brison, Steven M. Mullen, Michelle E. Wuerth, Kira A. Podolsky, M. Katherine Cook, Jacob Herman, Justin D. Walter, Shannon L. Meeks, P. Clint Spiegel
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0103650

Chemically Modified Peptide Scaffolds Target the CFTR-Associated Ligand PDZ Domain
Cited by: 16
Author(s): J.F. Amacher, Ruizhi Zhao, Mark R. Spaller, Dean R. Madden
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0206589

A comparative structural analysis of the surface properties of asco-laccases
Cited by: 19
Author(s): Heidi A. Ernst, Lise J. Jørgensen, Christian Bukh, Klaus Piontek, Dietmar A. Plattner, Lars Østergaard, Sine Larsen, Morten J. Bjerrum
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0086651

The Neutron Structure of Urate Oxidase Resolves a Long-Standing Mechanistic Conundrum and Reveals Unexpected Changes in Protonation
Cited by: 25
Author(s): Esko Oksanen, Matthew P. Blakeley, Mohamed El-Hajji, Ulf Ryde, Monika Budayova‐Spano
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0043045

Structure and Flexibility of the C-Ring in the Electromotor of Rotary FoF1-ATPase of Pea Chloroplasts
Cited by: 27
Author(s): Shai Saroussi, Maya Schushan, Nir Ben‐Tal, Wolfgang Junge, Nathan Nelson
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0056363

Using Haloarcula marismortui Bacteriorhodopsin as a Fusion Tag for Enhancing and Visible Expression of Integral Membrane Proteins in Escherichia coli
Cited by: 39
Author(s): Min Hsu, Tsung Fu Yu, Chia Cheng Chou, Hsu Yuan Fu, Chii‐Shen Yang, Andrew H.J. Wang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0161022

The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology
Cited by: 14
Author(s): Chad A. Brautigam, Ranjit K. Deka, Wei Z. Liu, Michael V. Norgard
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0034202

Structural Insights into TIR Domain Specificity of the Bridging Adaptor Mal in TLR4 Signaling
Cited by: 57
Author(s): Zhijie Lin, Jing Lü, Weihong Zhou, Yuequan Shen
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-018-31676-z

Structural Analysis of Redox-sensing Transcriptional Repressor Rex from Thermotoga maritima
Cited by: 7
Author(s): Young Woo Park, Young Yoon Jang, Hyun Kyu Joo, Jae Young Lee
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0062446

Tetramerization Reinforces the Dimer Interface of MnSOD
Cited by: 14
Author(s): Yinghong Sheng, Armando Durazo, Mikhail Schumacher, Edith Butler Gralla, Duilio Cascio, Diane E. Cabelli, Joan Selverstone Valentine
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0097903

Crystal Structure of the Neisseria gonorrhoeae MtrD Inner Membrane Multidrug Efflux Pump
Cited by: 64
Author(s): Jani Reddy Bolla, Chih‐Chia Su, V. L. Sylvia, Abhijith Radhakrishnan, Nitin Kumar, Feng Long, Tsung‐Han Chou, Jared A. Delmar, Hanlun Lei, Kanagalaghatta R. Rajashankar, William M. Shafer, Edward Yu
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0127149

Structural Basis for the Inhibition of Helicobacter pylori α-Carbonic Anhydrase by Sulfonamides
Cited by: 41
Author(s): Joyanta K. Modakh, Yu C. Liu, Mayra A. Machuca, Claudiu T. Supuran, Anna Roujeinikova
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-018-31812-9

The first crystal structure of a DNA-free nuclear receptor DNA binding domain sheds light on DNA-driven allostery in the glucocorticoid receptor
Cited by: 26
Author(s): Filipp Frank, C. Denise Okafor, Eric A. Ortlund
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0032033

Structural and Functional Analysis of Validoxylamine A 7′-phosphate Synthase ValL Involved in Validamycin A Biosynthesis
Cited by: 16
Author(s): Lina Zheng, Xiang Zhou, Huaidong Zhang, Xiaofeng Ji, Lei Li, Lin Huang, Linquan Bai, Houjin Zhang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0124056

The Crystal Structure of D-Threonine Aldolase from Alcaligenes xylosoxidans Provides Insight into a Metal Ion Assisted PLP-Dependent Mechanism
Cited by: 17
Author(s): M. Uhl, Gustav Oberdorfer, Georg Steinkellner, Lina Riegler-Berket, Daniel Mink, Friso van Assema, Martin Schürmann, Karl Gruber
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0158749

Crystal Structure of Bacillus subtilis Cysteine Desulfurase SufS and Its Dynamic Interaction with Frataxin and Scaffold Protein SufU
Cited by: 25
Author(s): Bastian Blauenburg, Andreas Mielcarek, Florian Altegoer, Christopher D. Fage, Uwe Linne, Gert Bange, Mohamed A. Marahiel
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-018-31961-x

Structural insights into antigen recognition of an anti-β-(1,6)-β-(1,3)-D-glucan antibody
Cited by: 7
Author(s): Kwang Hoon Sung, Jörn Josewski, Stefan Dübel, Wulf Blankenfeldt, Udo Rau
Software Mentions: 1
Published: almost 8 years ago

10.1080/15548627.2016.1226736

Characterization of Atg38 and NRBF2, a fifth subunit of the autophagic Vps34/PIK3C3 complex
Cited by: 50
Author(s): Yohei Ohashi, Nicolas Soler, Miguel García Ortegón, Lufei Zhang, Marie L. Kirsten, Olga Perišić, Glenn R. Masson, John E. Burke, Arjen J. Jakobi, Apostolos A. Apostolakis, Christopher M. Johnson, Maki Ohashi, Nicholas T. Ktistakis, Carsten Sachse, Roger L. Williams
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0038723

Structure of a Murine Norovirus NS6 Protease-Product Complex Revealed by Adventitious Crystallisation
Cited by: 25
Author(s): Eoin N Leen, Gabriela Baeza, Stephen Curry
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0015345

A Novel Dimeric Inhibitor Targeting Beta2GPI in Beta2GPI/Antibody Complexes Implicated in Antiphospholipid Syndrome
Cited by: 28
Author(s): Alexey Kolyada, Changjin Lee, Alfredo De Biasio, Natalia Beglova
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0048427

Structure-Based Engineering Increased the Catalytic Turnover Rate of a Novel Phenazine Prenyltransferase
Cited by: 23
Author(s): Georg Zocher, Orwah Saleh, Joel B. Heim, D.A. Herbst, Lutz Heide, Thilo Stehle
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0019521

Comparative Structural Analysis of Lipid Binding START Domains
Cited by: 114
Author(s): A.G. Thorsell, Wen‐Hwa Lee, C. Persson, M.I. Siponen, M.E. Nilsson, R.D. Busam, T. Kotenyova, H. Schüler, L. Lehtiö
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0009222

Structural Ordering of Disordered Ligand-Binding Loops of Biotin Protein Ligase into Active Conformations as a Consequence of Dehydration
Cited by: 28
Author(s): Vibha Gupta, Rakesh K. Gupta, Garima Khare, Dinakar M. Salunke, Avadhesha Surolia, Anil K. Tyagi
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0122466

Rheostat Re-Wired: Alternative Hypotheses for the Control of Thioredoxin Reduction Potentials
Cited by: 13
Author(s): Kathryn D. Bewley, Mishtu Dey, Rebekah E. Bjork, Sangha Mitra, Sarah E. Chobot, Catherine L. Drennan, Sean J. Elliott
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.56427

Chemical and structural investigation of the paroxetine-human serotonin transporter complex
Cited by: 46
Author(s): Jonathan A. Coleman, Vikas Navratna, Daniele Antermite, Dongxue Yang, James A. Bull, Eric Gouaux
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0163654

Crystal Structure of the Escherichia coli Fic Toxin-Like Protein in Complex with Its Cognate Antitoxin
Cited by: 5
Author(s): Frédéric V. Stanger, Alexander Harms, Christoph Dehio, Tilman Schirmer
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0089803

Insight into Highly Conserved H1 Subtype-Specific Epitopes in Influenza Virus Hemagglutinin
Cited by: 10
Author(s): Ki Joon Cho, Kwang Won Hong, Se‐Ho Kim, Jong Hyeon Seok, Sella Kim, Jihye Lee, Xavier Saelens, Kyung Hyun Kim
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0128700

Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme
Cited by: 7
Author(s): Eva Cséfalvay, Mikalai Lapkouski, Alena Guzanová, Ladislav Cséfalvay, Tatsiana Baikova, I. A. Shevelev, Vitali Bialevich, Katsiaryna Shamayeva, Pavel Janscak, Ivana Kutá Smatanová, Santosh Panjikar, Jannette Carey, Marie Weiserová, Rüdiger Ettrich
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0080761

X-Ray Crystal Structure of the Ancestral 3-Ketosteroid Receptor–Progesterone–Mifepristone Complex Shows Mifepristone Bound at the Coactivator Binding Interface
Cited by: 10
Author(s): Jennifer K. Colucci, Eric A. Ortlund
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0116369

Structure of the SthK Carboxy-Terminal Region Reveals a Gating Mechanism for Cyclic Nucleotide-Modulated Ion Channels
Cited by: 25
Author(s): Divya Kesters, Marijke Brams, Mieke Nys, Eveline Wijckmans, Radovan Spurný, Thomas Voets, Jan Tytgat, Jana Kusch, Chris Ulens
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0021624

Stabilizing Salt-Bridge Enhances Protein Thermostability by Reducing the Heat Capacity Change of Unfolding
Cited by: 105
Author(s): Chung-Han Chan, Tian-Hu Yu, Kam‐Bo Wong
Software Mentions: 1
Published: about 15 years ago

10.1038/s41598-018-31997-z

X-ray structure of full-length human RuvB-Like 2 – mechanistic insights into coupling between ATP binding and mechanical action
Cited by: 15
Author(s): Sara T.N. Silva, José A. Brito, Rocío Arranz, Carlos Óscar S. Sorzano, Christine Ebel, James Doutch, Mark D. Tully, José Marı́a Carazo, José L. Carrascosa, Pedro M. Matías, Tiago M. Bandeiras
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0186642

A novel FLNC frameshift and an OBSCN variant in a family with distal muscular dystrophy
Cited by: 28
Author(s): Daniela Rossi, Johanna Palmio, Anni Evilä, Lucia Galli, Virginia Barone, Tracy A. Caldwell, Rachel A. Policke, Esraa Aldkheil, Christopher E. Berndsen, Nathan T. Wright, Edoardo Malfatti, Guy Brochier, Enrico Pierantozzi, Albena Jordanova, Velina Guergueltcheva, Norma B. Romero, Peter Hackman, B. Eymard, Bjarne Udd, Vincenzo Sorrentino
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-018-32218-3

Structural cycle of the Thermus thermophilus PilF ATPase: the powering of type IVa pilus assembly
Cited by: 20
Author(s): Richard F. Collins, V. Karuppiah, C. Alistair Siebert, Rana Dajani, Angela Thistlethwaite, Jeremy P. Derrick
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0215140

Crystal structure of the SH3 domain of human Lyn non-receptor tyrosine kinase
Cited by: 6
Author(s): Sandra Berndt, Vsevolod V. Gurevich, T.M. Iverson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0094369

Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with WSSV DNA Polymerase PIP-Box
Cited by: 11
Author(s): J.S. Carrasco-Miranda, Alonso A. López-Zavala, Aldo A. Arvizu‐Flores, Karina D. García-Orozco, V. Stojanoff, E. Rudiño-Piñera, Luis G. Brieba, Rogerio R. Sotelo‐Mundo
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0136533

Structural Analysis of the Regulatory Domain of ExsA, a Key Transcriptional Regulator of the Type Three Secretion System in Pseudomonas aeruginosa
Cited by: 10
Author(s): Manisha Shrestha, Yi Xiao, Howard Robinson, Florian D. Schubot
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-018-32379-1

Acylated-acyl carrier protein stabilizes the Pseudomonas aeruginosa WaaP lipopolysaccharide heptose kinase
Cited by: 8
Author(s): Naomi N. K. Kreamer, Rajiv Chopra, Ruth E. Caughlan, Doriano Fabbro, Eric Fang, Patricia Gee, Ian Hunt, Min Li, Barbara C. Leon, Lionel Muller, Brian Vash, Angela Woods, Travis Stams, Charles R. Dean, Tsuyoshi Uehara
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0012896

Crystal Structure of the Formin mDia1 in Autoinhibited Conformation
Cited by: 41
Author(s): Takanori Otomo, Diana R. Tomchick, Takanori Otomo, Mischa Machius, Michael K. Rosen
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0010083

Shared Active Site Architecture between the Large Subunit of Eukaryotic Primase and DNA Photolyase
Cited by: 65
Author(s): Ludovic Sauguet, Sebastian Klinge, Rajika L. Perera, Joseph D. Maman, Luca Pellegrini
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0164678

Crystal Structure of Saccharomyces cerevisiae ECM4, a Xi-Class Glutathione Transferase that Reacts with Glutathionyl-(hydro)quinones
Cited by: 8
Author(s): Mathieu Schwartz, Claude Didierjean, Arnaud Hecker, Jean‐Michel Girardet, Mélanie Morel‐Rouhier, Éric Gelhaye, F. Favier
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-018-32967-1

A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily
Cited by: 5
Author(s): Rachel Fellows, Christopher M. Russo, Catarina S. Silva, Soon Goo Lee, Joseph M. Jez, John D. Chisholm, Chloë Zubieta, Max H. Nanao
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0018570

Ferritin Structure from Mycobacterium tuberculosis: Comparative Study with Homologues Identifies Extended C-Terminus Involved in Ferroxidase Activity
Cited by: 51
Author(s): Garima Khare, Vibha Gupta, Prachi Nangpal, Rakesh K. Gupta, Nicholas K. Sauter, Anil K. Tyagi
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0164243

Structural Basis of the Heterodimer Formation between Cell Shape-Determining Proteins Csd1 and Csd2 from Helicobacter pylori
Cited by: 16
Author(s): Doo Ri An, Ha Na Im, Jun Young Jang, Hyoun Sook Kim, Jieun Kim, Hye Jin Yoon, Dušan Hesek, Mijoon Lee, Shahriar Mobashery, Soon-Jong Kim, Se Won Suh
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0094610

Steroid Receptor RNA Activator (SRA) Modification by the Human Pseudouridine Synthase 1 (hPus1p): RNA Binding, Activity, and Atomic Model
Cited by: 13
Author(s): Tiphaine Huet, François-Alexandre Miannay, Jeffrey R. Patton, Stéphane Thore
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0155396

Structural Analysis and Insights into the Oligomeric State of an Arginine-Dependent Transcriptional Regulator from Bacillus halodurans
Cited by: 3
Author(s): Young Woo Park, Joongoo Kang, Hyun Ku Yeo, Jae Young Lee
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0044850

Crystal Structure of Der f 7, a Dust Mite Allergen from Dermatophagoides farinae
Cited by: 22
Author(s): Kang Wei Tan, Chacko Jobichen, Tan Ching Ong, Yifei Gao, Yuen Sung Tiong, Kang Ning Wong, Fook Tim Chew, J. Sivaraman, Yu Keung Mok
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0071451

Structures of Streptococcus pneumoniae PiaA and Its Complex with Ferrichrome Reveal Insights into the Substrate Binding and Release of High Affinity Iron Transporters
Cited by: 24
Author(s): Cheng Wang, Qiong Li, Yong-Liang Jiang, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0099349

Cyanuric Acid Hydrolase from Azorhizobium caulinodans ORS 571: Crystal Structure and Insights into a New Class of Ser-Lys Dyad Proteins
Cited by: 12
Author(s): Chong-Min Kyung, Ke Shi, Jennifer L. Seffernick, Anthony G. Dodge, Lawrence P. Wackett, Hideki Aihara
Software Mentions: 1
Published: about 12 years ago

10.1107/S0907444912027965

The structure of the ternary Eg5–ADP–ispinesib complex
Cited by: 40
Author(s): Sandeep K. Talapatra, Alexander W. Schüttelkopf, Frank Kozielski
Software Mentions: 1
Published: almost 14 years ago

10.7554/eLife.17063

Crystal structure of an HIV assembly and maturation switch
Cited by: 119
Author(s): Jonathan M. Wagner, Kaneil K. Zadrozny, Jakub Chrustowicz, Michael D. Purdy, Mark Yeager, Barbie K. Ganser‐Pornillos, Owen Pornillos
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0039985

A Common Ca2+-Driven Interdomain Module Governs Eukaryotic NCX Regulation
Cited by: 35
Author(s): Moshe Giladi, Yehezkel Sasson, Xianyang Fang, Reuben Hiller, Tal Buki, Yun‐Xing Wang, Joel A. Hirsch, Daniel Khananshvili
Software Mentions: 1
Published: about 14 years ago

10.1038/s41598-018-33479-8

Structural Analysis of an Epitope Candidate of Triosephosphate Isomerase in Opisthorchis viverrini
Cited by: 5
Author(s): Jonghyeon Son, Sulhee Kim, So Eun Kim, Haemin Lee, Myoung Ro Lee, Kwang Yeon Hwang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-33723-1

Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis
Cited by: 9
Author(s): Zoran Štefanić, Marta Narczyk, Goran Mikleušević, Saša Kazazić, Agnieszka Bzowska, Marija Luić
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-34171-7

Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis
Cited by: 337
Author(s): Robert N. Kirchdoerfer, Nianshuang Wang, Jesper Pallesen, Daniel Wrapp, Hannah L. Turner, Christopher A. Cottrell, Kizzmekia S. Corbett, Barney S. Graham, Jason S. McLellan, Andrew B. Ward
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0056138

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases
Cited by: 18
Author(s): Maly Levy-Assaraf, Milana Voronov-Goldman, Inna Rozman Grinberg, Gloria Weiserman, Linda J. W. Shimon, Sadanari Jindou, Ilya Borovok, Bryan A. White, Edward A. Bayer, Raphael Lamed, Felix Frolow
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-018-34176-2

Direct visualization of DNA baton pass between replication factors bound to PCNA
Cited by: 9
Author(s): Kouta Mayanagi, Sonoko Ishino, Tomoyuki Shirai, Takuji Oyama, Shinichi Kiyonari, Daisuke Kohda, Kosuke Morikawa, Yuji Ishino
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-34615-0

Crystal Structure of Human Nocturnin Catalytic Domain
Cited by: 13
Author(s): Michael Estrella, Jin Du, Alexei Korennykh
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0117836

Essential Role of the C-Terminal Helical Domain in Active Site Formation of Selenoprotein MsrA from Clostridium oremlandii
Cited by: 2
Author(s): Eun Hye Lee, Kitaik Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0142107

Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
Cited by: 6
Author(s): Huaidong Zhang, Guimin Zhang, Chaoxiang Yao, Muhammad Junaid, Zhenghui Lu, Houjin Zhang, Yanhe Ma
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0026629

A Novel Dimer-Tetramer Transition Captured by the Crystal Structure of the HIV-1 Nef
Cited by: 13
Author(s): Pankaj Singh, Gaya P. Yadav, Sudeepti Gupta, Anil Kumar Tripathi, Ravishankar Ramachandran, Raj Kamal Tripathi
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0251743

Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin
Cited by: 7
Author(s): Satoshi Inouye, Yuto Sumida, Yuri Tomabechi, Jumpei Taguchi, Mikako Shirouzu, Takamitsu Hosoya
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.03275

Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks
Cited by: 73
Author(s): Suwen Zhao, A. Sakai, Xinshuai Zhang, M.W. Vetting, Ritesh Kumar, B. Hillerich, Brian San Francisco, José O. Solbiati, Adam Steves, Shoshana D. Brown, Eyal Akiva, Alan E. Barber, R.D. Seidel, Patricia C. Babbitt, Steven C. Almo, J.A. Gerlt, Matthew P. Jacobson
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-018-35754-0

High resolution X-ray and NMR structural study of human T-cell immunoglobulin and mucin domain containing protein-3
Cited by: 28
Author(s): Amit Gandhi, Walter M. Kim, Zhenyu Sun, Yu‐Hwa Huang, Daniel A. Bonsor, Eric J. Sundberg, Yasuyuki Kondo, Gerhard Wagner, Vijay K. Kuchroo, Gregory A. Petsko, Richard S. Blumberg
Software Mentions: 1
Published: over 7 years ago

10.1107/S1399004714012917

Mapping the conformational space accessible to catechol-<i>O</i>-methyltransferase
Cited by: 30
Author(s): A. Ehler, Jörg Benz, Daniel Schlatter, M.G. Rudolph
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0196691

A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes
Cited by: 7
Author(s): Leena Penttinen, Chiara Rutanen, Markku Saloheimo, Kristiina Kruus, Juha Rouvinen, Nina Hakulinen
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0115344

The Human Otubain2-Ubiquitin Structure Provides Insights into the Cleavage Specificity of Poly-Ubiquitin-Linkages
Cited by: 28
Author(s): Mikael Altun, Thomas S. Walter, Holger Kramer, Patrick Herr, Alexander Iphöfer, Johan Boström, Yael David, Alia Komsany, Nicola Ternette, Ami Navon, David I. Stuart, Jingshan Ren, Benedikt M. Kessler
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms21218186

Structural Insight on Functional Regulation of Human MINERVA Protein
Cited by: 1
Author(s): Hyunggu Hahn, Dong‐Eun Lee, Dong Man Jang, Jiyoun Kim, Yeon Lee, Heesun Cheong, Byung Woo Han, Hyoun Sook Kim
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0025226

Structural Basis of Cooperativity in Human UDP-Glucose Dehydrogenase
Cited by: 12
Author(s): V. Rajakannan, Hui Sun Lee, Seon Ha Chong, Han Bong Ryu, Ji Young Bae, Eun Young Whang, Jae-Wan Huh, Sung Woo Cho, Lin Woo Kang, Han Choe, Robert Robinson
Software Mentions: 1
Published: almost 15 years ago

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