cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1016/j.xpro.2021.100642

Protocol for improving diffraction quality of leucyl-tRNA synthetase 1 with methylation and post-crystallization soaking and cooling in cryoprotectants
Cited by: 0
Author(s): Sulhee Kim, Ina Yoon, Sung Hoon Kim, Kwang Yeon Hwang
Software Mentions: 1
Published: about 3 years ago

10.1016/j.xpro.2021.100686

Protocol for the use of focused ion-beam milling to prepare crystalline lamellae for microcrystal electron diffraction (MicroED)
Cited by: 7
Author(s): Michael W. Martynowycz, Tamir Gonen
Software Mentions: 1
Published: about 3 years ago

10.1126/sciadv.aax8855

Cryo–electron microscopy structure and analysis of the P-Rex1–Gβγ signaling scaffold
Cited by: 28
Author(s): Jennifer N. Cash, Sarah Urata, Sheng Li, Sandeep K. Ravala, Larisa Avramova, Michael D. Shost, J. Silvio Gutkind, John J.G. Tesmer, Michael A. Cianfrocco
Software Mentions: 1
Published: about 5 years ago

10.1126/sciadv.aax1836

Allosteric modulation of nucleoporin assemblies by intrinsically disordered regions
Cited by: 12
Author(s): Bartlomiej J. Blus, Junseock Koh, Aleksandra Królak, Hyuk‐Soo Seo, Elias Coutavas, Günter Blobel
Software Mentions: 1
Published: about 5 years ago

10.1126/sciadv.abe2631

Structures of <i>Rhodopseudomonas palustris</i> RC-LH1 complexes with open or closed quinone channels
Cited by: 37
Author(s): David J. K. Swainsbury, Pu Qian, Philip J. Jackson, Kaitlyn M. Faries, Dariusz M. Niedzwiedzki, Elizabeth C. Martin, David A. Farmer, Lorna A. Malone, Rebecca Thompson, Neil A. Ranson, Daniel P. Canniffe, Mark J. Dickman, Dewey Holten, Christine Kirmaier, Andrew Hitchcock, C. Neil Hunter
Software Mentions: 1
Published: almost 4 years ago

10.1126/sciadv.abg9676

Genetic prion disease–related mutation E196K displays a novel amyloid fibril structure revealed by cryo-EM
Cited by: 24
Author(s): Liqiang Wang, Kun Zhao, Han-Ye Yuan, Xiangning Li, Hai-Bin Dang, Yeyang Ma, Qiang Wang, Chen Wang, Yunpeng Sun, Jie Chen, Dan Li, Delin Zhang, Ping Yin, Cong Liu, Yi Liang
Software Mentions: 1
Published: about 3 years ago

10.1038/s41597-019-0010-0

MHz data collection of a microcrystalline mixture of different jack bean proteins
Cited by: 4
Author(s): Marie Luise Grünbein, Johan Bielecki, A. Gorel, M. Stricker, Richard Bean, Marco Cammarata, Katerina Dörner, Lars Fröhlich, Elisabeth Hartmann, Steffen Hauf, M. Hilpert, Yoonhee Kim, Marco Kloos, Romain Letrun, Marc Messerschmidt, Grant Mills, Gabriela Nass Kovács, Marco Ramilli, C.M. Roome, Tokushi Sato, Matthias Scholz, Michel Sliwa, J. Sztuk-Dambietz, Martin H. Weik, Britta Weinhausen, Nasser Al-Qudami, Djelloul Boukhelef, Sándor Brockhauser, Wajid Ehsan, Moritz Emons, Sergey Esenov, Hans Fangohr, A. Kaukher, Thomas Kluyver, Max Lederer, Luis Maia, Maurizio Manetti, Thomas Michelat, A. Münnich, Florent Pallas, Guido Palmer, Gianpietro Previtali, Natascha Raab, A. Silenzi, J. Szuba, Sandhya Venkatesan, K. Wrona, Jun Zhu, R. Bruce Doak, Robert L. Shoeman, L. Foucar, J.P. Colletier, Adrian P. Mancuso, T.R.M. Barends, Claudiu A. Stan, Ilme Schlichting
Software Mentions: 1
Published: over 5 years ago

10.1038/srep09878

Auto-inhibitory Mechanism of the Human Mitochondrial RNase P Protein Complex
Cited by: 26
Author(s): Fengzhi Li, Xiaofen Liu, Weihong Zhou, Xue Yang, Yuequan Shen
Software Mentions: 1
Published: over 9 years ago

10.1038/srep09762

Protein stabilization utilizing a redefined codon
Cited by: 33
Author(s): Kazumasa Ohtake, Atsushi Yamaguchi, Takahito Mukai, Hiroki Kashimura, Nobutaka Hirano, Mitsuru Haruki, Sosuke Kohashi, Kazumasa Yamagishi, Kazutaka Murayama, Yuri Tomabechi, Takashi Itagaki, Ryogo Akasaka, Masahito Kawazoe, Chie Takemoto, Mikako Shirouzu, Shigeyuki Yokoyama, Kensaku Sakamoto
Software Mentions: 1
Published: over 9 years ago

10.1038/srep10451

A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
Cited by: 106
Author(s): Philip Roedig, Ismo Vartiainen, Ramona Duman, S. Panneerselvam, Nicolas Stübe, O. Lorbeer, Martin Warmer, Geoff Sutton, David I. Stuart, E. Weckert, Christian Dávid, Armin Wagner, A. Meents
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12830

Crystal structures of Mycobacterium tuberculosis GlgE and complexes with non-covalent inhibitors
Cited by: 12
Author(s): Jared Lindenberger, Sri Kumar Veleti, Brittney N. Wilson, Steven J. Sucheck, Donald R. Ronning
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13133

Structural basis for the neutralization of MERS-CoV by a human monoclonal antibody MERS-27
Cited by: 59
Author(s): Xintong Yu, Senyan Zhang, Liwei Jiang, Ye Cui, Dongxia Li, Dongli Wang, Nianshuang Wang, Lili Fu, Xuanlin Shi, Ziqiang Li, Linqi Zhang, Xinquan Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13028

Improved Pharmacological and Structural Properties of HIV Fusion Inhibitor AP3 over Enfuvirtide: Highlighting Advantages of Artificial Peptide Strategy
Cited by: 32
Author(s): Xiaoyan Zhu, Yun Zhu, Sheng Ye, Qian Wang, Wei Xu, Shan Su, Zhiwu Sun, Fei Yu, Qi Liu, Chao Wang, Tianhong Zhang, Zhenqing Zhang, Xiaoyan Zhang, Jianqing Xu, Lanying Du, Keliang Liu, Lu Lu, Rongguang Zhang, Shibo Jiang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep15808

Structural evidence for the role of polar core residue Arg175 in arrestin activation
Cited by: 33
Author(s): Joachim Granzin, Andreas M. Stadler, Anneliese Cousin, Ramona Schlesinger, Renu Batra‐Safferling
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16470

Structural insights into HetR−PatS interaction involved in cyanobacterial pattern formation
Cited by: 27
Author(s): Hai-Xi Hu, Yong-Liang Jiang, Mingyang Zhao, Kun Cai, Sanling Liu, Bin Wen, Pei Lv, Yonghui Zhang, Junhui Peng, Hui Zhong, Gino Yu, Yan-Min Ren, Zhiyong Zhang, Changlin Tian, Qingfa Wu, Mikael Oliveberg, Cheng‐Cai Zhang, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16915

Structural insights into YfiR sequestering by YfiB in Pseudomonas aeruginosa PAO1
Cited by: 14
Author(s): Shanshan Li, Tingting Li, Yueyang Xu, Qionglin Zhang, Wei Zhang, Shiyou Che, Ruihua Liu, Yingying Wang, Mark Bartlam
Software Mentions: 1
Published: about 9 years ago

10.1038/srep17216

Structure of the Human Factor VIII C2 Domain in Complex with the 3E6 Inhibitory Antibody
Cited by: 5
Author(s): Michelle E. Wuerth, Rebecca K. Cragerud, P. Clint Spiegel
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep17204

Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation
Cited by: 64
Author(s): Masatoshi Wakamori, Yuki Fujii, Noriyuki Suka, Mikako Shirouzu, Kensaku Sakamoto, Takashi Umehara, Shigeyuki Yokoyama
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep17144

Structure of Mycobacterium thermoresistibile GlgE defines novel conformational states that contribute to the catalytic mechanism
Cited by: 3
Author(s): V. Mendes, M. Błaszczyk, Ana Maranha, Nuno Empadinhas, Tom L. Blundell
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep19211

Peptides in headlock – a novel high-affinity and versatile peptide-binding nanobody for proteomics and microscopy
Cited by: 97
Author(s): Michael B. Braun, Bjoern Traenkle, Philipp Alexander Koch, Felix Emele Emele, F. T. Weiss, Oliver Poetz, Thilo Stehle, Ulrich Rothbauer
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep19565

Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 μ homology domain
Cited by: 12
Author(s): Akira Shimada, Atsuko Yamaguchi, Daisuke Kohda
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20161

Mechanistic insights into the recognition of 5-methylcytosine oxidation derivatives by the SUVH5 SRA domain
Cited by: 15
Author(s): Eerappa Rajakumara, Naveen Kumar Nakarakanti, M. Angel Nivya, Mutyala Satish
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21581

Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
Cited by: 65
Author(s): Chien Hao Chiang, Cédric Grauffel, Wu Li, Pan Hsien Kuo, L.G. Doudeva, Carmay Lim, Che Kun James Shen, Hanna S. Yuan
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep22475

Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation
Cited by: 25
Author(s): Pankaj Sharma, Neha Verma, Pradip Kumar Singh, Suresh Korpole, . Ashish
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23600

Crystal structure of the vicilin from Solanum melongena reveals existence of different anionic ligands in structurally similar pockets
Cited by: 18
Author(s): A. C. Jain, Ashish Kumar, Dinakar M. Salunke
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23784

Human DNA polymerase α in binary complex with a DNA:DNA template-primer
Cited by: 33
Author(s): Javier Pardo de Santayana y Coloma, Robert E. Johnson, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24979

Crystal structure and MD simulation of mouse EndoV reveal wedge motif plasticity in this inosine-specific endonuclease
Cited by: 9
Author(s): Meh Sameen Nawaz, Erik Sebastian Vik, Mia Elise Ronander, Anne Marthe Solvoll, Pernille Blicher, Magnar Bjørås, Ingrun Alseth, Bjørn Dalhus
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24788

The structural basis of chicken, swine and bovine CD8αα dimers provides insight into the co-evolution with MHC I in endotherm species
Cited by: 9
Author(s): Yanjie Liu, Xin Li, Jianxun Qi, Nianzhi Zhang, Chun Xia
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25961

X-Ray Structure and Inhibition of 3C-like Protease from Porcine Epidemic Diarrhea Virus
Cited by: 11
Author(s): Sarah E. St. John, Brandon Anson, Andrew D. Mesecar
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27498

Structural and biochemical characterization of the cell fate determining nucleotidyltransferase fold protein MAB21L1
Cited by: 33
Author(s): Carina C. de Oliveira Mann, R. Kiefersauer, Gregor Witte, Karl‐Peter Hopfner
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28664

New insights about pilus formation in gut-adapted Lactobacillus rhamnosus GG from the crystal structure of the SpaA backbone-pilin subunit
Cited by: 17
Author(s): Priyanka Chaurasia, Shivendra Pratap, Ingemar von Ossowski, Airi Palva, Vengadesan Krishnan
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29457

Dual thio-digalactoside-binding modes of human galectins as the structural basis for the design of potent and selective inhibitors
Cited by: 66
Author(s): T.J. Hsieh, Hsien Ya Lin, Zhijay Tu, Ting Chien Lin, Shang-Chuen Wu, Yu Yao Tseng, Fu‐Tong Liu, Shang-Te Danny Hsu, Chun Hung Lin
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30442

Cell-free methods to produce structurally intact mammalian membrane proteins
Cited by: 52
Author(s): Takehiro Shinoda, Naoko Shinya, Kaori Ito, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Kunio Hirata, Yoshiaki Kawano, Masaki Yamamoto, Taisuke Tomita, Yoshihiro Ishibashi, Yoshio Hirabayashi, Tomomi Kimura‐Someya, Mikako Shirouzu, Shigeyuki Yokoyama
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31487

Macromolecular structure phasing by neutron anomalous diffraction
Cited by: 13
Author(s): M.G. Cuypers, Sax A. Mason, Estelle Mossou, Michael Haertlein, V. Trevor Forsyth, Edward P. Mitchell
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32277

Time-dependent X-ray diffraction studies on urea/hen egg white lysozyme complexes reveal structural changes that indicate onset of denaturation
Cited by: 13
Author(s): Tushar Raskar, Sagar Khavnekar, M.V. Hosur
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33633

Full-length model of the human galectin-4 and insights into dynamics of inter-domain communication
Cited by: 14
Author(s): Joane K. Rustiguel, Ricardo Oliveira dos Santos Soares, Steve P. Meisburger, Katherine M. Davis, Kristina L. Malzbender, Nozomi Ando, Marcelo Dias‐Baruffi, Maria Cristina Nonato
Software Mentions: 1
Published: about 8 years ago

10.1038/srep33632

Structural basis for disruption of claudin assembly in tight junctions by an enterotoxin
Cited by: 83
Author(s): Takehiro Shinoda, Naoko Shinya, Kaori Ito, Noboru Ohsawa, Takaho Terada, Kunio Hirata, Yoshiaki Kawano, Masaki Yamamoto, Tomomi Kimura‐Someya, Shigeyuki Yokoyama, Mikako Shirouzu
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34756

Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide
Cited by: 34
Author(s): Hiroki Omura, Daisuke Oikawa, Takanori Nakane, Megumi Kato, Ryohei Ishii, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35710

Crystal structure of human aldehyde dehydrogenase 1A3 complexed with NAD+ and retinoic acid
Cited by: 56
Author(s): Andrea Moretti, Jianfeng Li, Stefano Donini, Robert W. Sobol, Menico Rizzi, Silvia Garavaglia
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35894

Crystal structures and inhibition of Trypanosoma brucei hypoxanthine–guanine phosphoribosyltransferase
Cited by: 14
Author(s): D. Teran, Dana Hocková, Michal Česnek, Alena Zı́ková, Lieve Naesens, Dianne T. Keough, Luke W. Guddat
Software Mentions: 1
Published: about 8 years ago

10.1038/srep37708

Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.
Cited by: 53
Author(s): Anna M. Łasica, Theodoros Goulas, Danuta Mizgalska, Xiaoyan Zhou, Iñaki de Diego, Mirosław Książek, Mariusz Madej, Yonghua Guo, Tibisay Guevara, Magdalena Nowak, Barbara Potempa, Apoorv Goel, Maryta Sztukowska, Apurva T. Prabhakar, Monika Bzowska, Magdalena Widziołek, Ida B. Thøgersen, Jan J. Enghild, Mary Simonian, Arkadiusz W. Kulczyk, Ky-Anh Nguyen, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep39095

Structural implications of Ca2+-dependent actin-bundling function of human EFhd2/Swiprosin-1
Cited by: 22
Author(s): Kyoung Ryoung Park, Min‐Sung Kwon, Jin Yong An, Jung‐Gyu Lee, Hyung‐Seop Youn, Youngjin Lee, Jung Youn Kang, Tae Kyun Kim, Jia Jia Lim, Jeong Soon Park, Sung Haeng Lee, Woo Keun Song, Hae‐Kap Cheong, Chang‐Duk Jun, Soo Hyun Eom
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep39998

Mechanisms of Yersinia YopO kinase substrate specificity
Cited by: 9
Author(s): Wei Lin Lee, Pavithra Singaravelu, Sheena Wee, Bin Xue, Khay Chun Ang, Jayantha Gunaratne, Jonathan M. Grimes, Kunchithapadam Swaminathan, Robert Robinson
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep42374

Heteroaryldihydropyrimidine (HAP) and Sulfamoylbenzamide (SBA) Inhibit Hepatitis B Virus Replication by Different Molecular Mechanisms
Cited by: 100
Author(s): Zheng Zhou, Tai‐Shan Hu, Xue Zhou, Steffen Wildum, Fernando García-Alcalde, Zhiheng Xu, Daitze Wu, Yi Mao, Xiao‐Jun Tian, Yuan Zhou, Fang Shen, Zhisen Zhang, Guozhi Tang, Isabel Nájera, Guang Yang, Hong C. Shen, John A. T. Young, Ning Qin
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep42580

A Mutation Identified in Neonatal Microcephaly Destabilizes Zika Virus NS1 Assembly in Vitro
Cited by: 24
Author(s): Deping Wang, Cheng Chen, Shengnan Liu, Hailiang Zhou, Kailin Yang, Qi Zhao, Xiaoyun Ji, Chen Chen, Wei Xie, Zefang Wang, Li-Zhi Mi, Haitao Yang
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep44542

Structural insights into the γ-lactamase activity and substrate enantioselectivity of an isochorismatase-like hydrolase from Microbacterium hydrocarbonoxydans
Cited by: 9
Author(s): Shuaihua Gao, Yu Zhou, Weiwei Zhang, Wenhe Wang, You Yu, Yajuan Mu, Hao Wang, Xinqi Gong, Guojun Zheng, Yue Feng
Software Mentions: 1
Published: over 7 years ago

10.1038/srep44832

Structural and functional studies of a noncanonical Dicer from Entamoeba histolytica
Cited by: 5
Author(s): Xiang Yu, Xuhang Li, Lina Zheng, Jinbiao Ma, Jianhua Gan
Software Mentions: 1
Published: over 7 years ago

10.1038/srep45389

Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase
Cited by: 15
Author(s): Alexander Minges, Daniel Ciupka, Christian Winkler, Astrid Höppner, Holger Gohlke, Georg Groth
Software Mentions: 1
Published: over 7 years ago

10.1038/srep45604

Atomic resolution structure of serine protease proteinase K at ambient temperature
Cited by: 24
Author(s): Tetsuya Masuda, Mamoru Suzuki, Shiro Inoue, Changyong Song, Takanori Nakane, Eriko Nango, Rie Tanaka, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Bunzo Mikami, Osamu Nureki, Keiji Numata, So Iwata, Michihiro Sugahara
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46370

SnoN Stabilizes the SMAD3/SMAD4 Protein Complex
Cited by: 15
Author(s): K. Wallden, T. Nyman, Bengt Hållberg
Software Mentions: 1
Published: over 7 years ago

10.1038/srep46738

Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily
Cited by: 19
Author(s): Elisa Lanfranchi, Tea Pavkov‐Keller, Eva-Maria Koehler, Matthias Diepold, Kerstin Steiner, Barbara Darnhofer, Jürgen Hartler, Tom van den Bergh, Han Joosten, Mandana Gruber‐Khadjawi, Gerhard G. Thallinger, Ruth Birner‐Gruenberger, Karl Gruber, Margit Winkler, Anton Glieder
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00610-0

Novel insights into the interaction of UBA5 with UFM1 via a UFM1-interacting sequence
Cited by: 21
Author(s): P. Padala, Walaa Oweis, Bayan Mashahreh, Nadine Soudah, Einav Cohen-Kfir, Emily A. Todd, Christopher E. Berndsen, Reuven Wiener
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00761-0

Hydroxyethyl cellulose matrix applied to serial crystallography
Cited by: 73
Author(s): Michihiro Sugahara, Takanori Nakane, Tetsuya Masuda, Mamoru Suzuki, Shiro Inoue, Changyong Song, Rie Tanaka, Toru Nakatsu, Eiichi Mizohata, Fumiaki Yumoto, Kensuke Tono, Yasumasa Joti, Takashi Kameshima, Takaki Hatsui, Makina Yabashi, Osamu Nureki, Keiji Numata, Eriko Nango, So Iwata
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00919-w

Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes
Cited by: 19
Author(s): Pedro Bule, Victor D. Alves, Vered Israeli-Ruimy, Ana Luı́sa Carvalho, L.M.A. Ferreira, Steven P. Smith, Harry J. Gilbert, Shabir Najmudin, Edward A. Bayer, Carlos M. G. A. Fontes
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02044-0

Structural insights into a 20.8-kDa tegumental-allergen-like (TAL) protein from Clonorchis sinensis
Cited by: 9
Author(s): Chang Hwa Jo, Jonghyeon Son, Sulhee Kim, Takashi Oda, Jae-Hoon Kim, Myoung Ro Lee, Mamoru Sato, Hyun Tae Kim, Satoru Unzai, Sam Yong Park, Kwang Yeon Hwang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-02153-w

Lipoxygenase 2 from Cyanothece sp. controls dioxygen insertion by steric shielding and substrate fixation
Cited by: 13
Author(s): Julia Newie, Piotr Neumann, Martin Werner, Ricardo A. Mata, Ralf Ficner, Ivo Feußner
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03034-y

Pwp2 mediates UTP-B assembly via two structurally independent domains
Cited by: 9
Author(s): Fanny Boissier, Christina Schmidt, Jan Linnemann, Sébastien Fribourg, Jorge Pérez-Fernández
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03768-9

Crystal structure of the DNA-binding domain of Myelin-gene Regulatory Factor
Cited by: 11
Author(s): Xiangkai Zhen, Bowen Li, Fang Hu, Shufeng Yan, Gabriele Meloni, Hui‐Liang Li, Ning Shi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03567-2

High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway
Cited by: 26
Author(s): Seiji Ishii, Kenji Fukui, Satoshi Yokoshima, Kazuo Kumagai, Youko Beniyama, Tetsuya Kodama, Tohru Fukuyama, Takayoshi Okabe, Tetsuo Nagano, Hirotatsu Kojima, Takayuki Yano
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-05889-7

An engineered protein antagonist of K-Ras/B-Raf interaction
Cited by: 54
Author(s): Monique J. Kauke, Michael W. Traxlmayr, Jillian A. Parker, Jonathan D. Kiefer, Ryan Knihtila, John H. McGee, Greg Verdine, Carla Mattos, K. Dane Wittrup
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06576-3

The Tnfaip8-PE complex is a novel upstream effector in the anti-autophagic action of insulin
Cited by: 18
Author(s): Ji Soo Kim, Jimin Park, Mi Sun Kim, Ji Young Ha, Ye Won Jang, Dongkun Shin, Jin H. Son
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07755-y

Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations
Cited by: 20
Author(s): R.M. Counago, C.K. Allerston, P. Savitsky, Hátylas Azevedo, Paulo H. Godoi, Carrow Wells, Alessandra Mascarello, F. Gama, Katlin B. Massirer, William J. Zuercher, Cristiano Ruch Werneck Guimarães, O. Gileadi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07887-1

Crystal Structure of MpPR-1i, a SCP/TAPS protein from Moniliophthora perniciosa, the fungus that causes Witches’ Broom Disease of Cacao
Cited by: 11
Author(s): Renata Moro Baroni, Zhipu Luo, Rabih Darwiche, Elissa M. Hudspeth, Roger Schneiter, Gonçalo Amarante Guimarães Pereira, Jorge Maurı́cio Costa Mondego, Oluwatoyin A. Asojo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09538-x

Structural basis for therapeutic inhibition of influenza A polymerase PB2 subunit
Cited by: 15
Author(s): Xiaolei Ma, Lili Xie, Charles Wartchow, Robert Warne, Yongjin Xu, Alexey Rivkin, David C. Tully, S. Shia, Kyoko Uehara, Dianna M. Baldwin, Gladys T. Muiru, Weidong Zhong, Isabel Zaror, Dirksen E. Bussiere, Vincent H. J. Léonard
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-10249-6

The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery
Cited by: 8
Author(s): Marie S. Prevost, Nikos Pinotsis, Maud Dumoux, Richard Hayward, Gabriel Waksman
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11031-4

Structural basis for CRMP2-induced axonal microtubule formation
Cited by: 38
Author(s): Shinsuke Niwa, Fumio Nakamura, Yuri Tomabechi, Mari Aoki, Hideki Shigematsu, Takashi Matsumoto, Atsushi Yamagata, Shuya Fukai, Nobutaka Hirokawa, Yoshio Goshima, Mikako Shirouzu, Ryo Nitta
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11542-0

Laminarinase from Flavobacterium sp. reveals the structural basis of thermostability and substrate specificity
Cited by: 20
Author(s): Hui‐Min Qin, Takuya Miyakawa, Akira Inoue, Akira Nakamura, Ryuji Nishiyama, Takao Ojima, Masaru Tanokura
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12409-0

The crystal structure of the regulatory domain of the human sodium-driven chloride/bicarbonate exchanger
Cited by: 7
Author(s): Carolina Alvadia, T. Sommer, Kaare Bjerregaard-Andersen, Helle Hasager Damkier, Michele Montrasio, Christian Aalkjær, J. Preben Morth
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12186-w

Crystal structure of an ASCH protein from Zymomonas mobilis and its ribonuclease activity specific for single-stranded RNA
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Author(s): Bo-Na Kim, Minsang Shin, Soonhoi Ha, Suk-Youl Park, Pil-Won Seo, Andreas Hofmann, Ji Soo Kim
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-13669-6

Structural and Mechanistic Analysis of Drosophila melanogaster Agmatine N-Acetyltransferase, an Enzyme that Catalyzes the Formation of N-Acetylagmatine
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Author(s): Daniel R. Dempsey, Derek A. Nichols, Matthew R. Battistini, O.A. Pemberton, Santiago Rodriguez Ospina, Xiujun Zhang, Anne-Marie Carpenter, Brian G. O’Flynn, James W. Leahy, Ankush Kanwar, Eric M. Lewandowski, Yu Chen, David J. Merkler
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14372-2

Helicobacter pylori chemoreceptor TlpC mediates chemotaxis to lactate
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Author(s): Mayra A. Machuca, Kevin S. Johnson, Yu C. Liu, David Steer, Karen M. Ottemann, Anna Roujeinikova
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14448-z

Structural dissection of human metapneumovirus phosphoprotein using small angle x-ray scattering
Cited by: 19
Author(s): Max Renner, Guido C. Paesen, Claire M. Grison, Sébastien Granier, Jonathan M. Grimes, C. Leyrat
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-14797-9

Modular endolysin of Burkholderia AP3 phage has the largest lysozyme-like catalytic subunit discovered to date and no catalytic aspartate residue
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Author(s): Barbara Maciejewska, Karol Źrubek, Akbar Espaillat, M. Wiśniewska, Krzysztof P. Rembacz, Felipe Cava, Grzegorz Dubin, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16607-8

Structural insights into the potency of SK channel positive modulators
Cited by: 19
Author(s): Young Woo Nam, Razan Orfali, Tingting Liu, Kunqian Yu, Meng Cui, Heike Wulff, Miao Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17677-4

Structural insight into a CE15 esterase from the marine bacterial metagenome
Cited by: 17
Author(s): Concetta De Santi, Osman Gani, Ronny Helland, Adele Kim Williamson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-16876-3

Insulin in motion: The A6-A11 disulfide bond allosterically modulates structural transitions required for insulin activity
Cited by: 27
Author(s): Bianca J. van Lierop, Shee Chee Ong, Alessia Belgi, Carlie Delaine, Sofianos Andrikopoulos, Naomi L. Haworth, John G. Menting, Michael C. Lawrence, Andrea J. Robinson, Briony E. Forbes
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-18045-y

A Novel Ultra-Stable, Monomeric Green Fluorescent Protein For Direct Volumetric Imaging of Whole Organs Using CLARITY
Cited by: 59
Author(s): Daniel J. Scott, Natalie Gunn, Kelvin Junwei Yong, Verena C. Wimmer, Nicholas A. Veldhuis, Leesa M. Challis, Mouna Haidar, Steven Petrou, Ross A. D. Bathgate, Michael D. W. Griffin
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20067-z

Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis
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Author(s): Michael Hall, Yoshinori Hasegawa, Fuminobu Yoshimura, Karina Persson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20634-4

Structural and mechanistic divergence of the small (p)ppGpp synthetases RelP and RelQ
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Author(s): Wieland Steinchen, Marian Samuel Vogt, Florian Altegoer, Pietro Ivan Giammarinaro, Petra Horvatek, Christiane Wolz, Gert Bange
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21476-w

6-Thioguanine is a noncompetitive and slow binding inhibitor of human deubiquitinating protease USP2
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Author(s): Shang-Ju Chuang, Sha-Yen Cheng, Hui-Chi Tang, Chee‐Ching Sun, Chi-Yuan Chou
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21955-0

Understanding the Structure, Multimerization, Subcellular Localization and mC Selectivity of a Genomic Mutator and Anti-HIV Factor APOBEC3H
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Author(s): Fumiaki Ito, Hanjing Yang, Xiao Xiao, Shuxing Li, Aaron Wolfe, Brett Zirkle, В. М. Арутюнян, Xiaojiang S. Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25237-7

Structures of Angptl3 and Angptl4, modulators of triglyceride levels and coronary artery disease
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Author(s): Ekaterina Biterova, Mariam Esmaeeli, Heli I. Alanen, Mirva J. Saaranen, Lloyd W. Ruddock
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25231-z

Inherent flexibility of CLIC6 revealed by crystallographic and solution studies
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Author(s): Alisa Ferofontov, Roi Strulovich, Milit Marom, Moshe Giladi, Yoni Haitin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25487-5

Patient-derived mutations within the N-terminal domains of p85α impact PTEN or Rab5 binding and regulation
Cited by: 12
Author(s): Paul Mellor, Jeremy Marshall, Xuan Ruan, Dielle E. Whitecross, Rebecca Ross, Margaret A. Knowles, Stanley A. Moore, Deborah H. Anderson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-25157-6

Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators
Cited by: 13
Author(s): Sabina Sarvan, François Charih, Momen Askoura, James Butcher, J.S. Brunzelle, Alain Stintzi, Jean Couture
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2011.11.001

Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824
Cited by: 77
Author(s): Susan E. Cellitti, Jennifer Shaffer, David H. Jones, Tathagata Mukherjee, Meera Gurumurthy, Badry Bursulaya, Helena I. Boshoff, Inhee Choi, Amit Nayyar, Yong Sok Lee, Joseph Cherian, Pornwaratt Niyomrattanakit, Thomas Dick, Ujjini H. Manjunatha, Clifton E. Barry, Glen Spraggon, Bernhard H. Geierstanger
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.05.002

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2
Cited by: 20
Author(s): Lyudmila Dimitrova, Eugene Valkov, Shintaro Aibara, Dirk Flemming, Stephen H. McLaughlin, Ed Hurt, Murray Stewart
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.12.015

Family-wide Structural Analysis of Human Numb-Associated Protein Kinases
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Author(s): F.J. Sorrell, M. Szklarz, K.R. Abdul Azeez, J.M. Elkins, Stefan Knapp
Software Mentions: 1
Published: over 8 years ago

10.1016/j.str.2018.03.014

Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1
Cited by: 30
Author(s): Deg Briggs, Erhard Hohenester
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2018.07.011

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3
Cited by: 43
Author(s): J.J.B. Cockburn, Sophie J. Hesketh, Peter O. Mulhair, Maren Thomsen, Mary J. O’Connell, Michael Way
Software Mentions: 1
Published: about 6 years ago

10.1016/j.str.2019.06.008

Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation
Cited by: 4
Author(s): Mads Gabrielsen, Lori Buetow, Dominika Kowalczyk, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.09.010

Combining Transient Expression and Cryo-EM to Obtain High-Resolution Structures of Luteovirid Particles
Cited by: 22
Author(s): Matthew J. Byrne, John F. C. Steele, Emma L. Hesketh, Miriam Walden, Rebecca Thompson, George P. Lomonossoff, Neil A. Ranson
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 4 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
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Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: about 4 years ago

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