cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-28918-5

Crystal structure of an L chain optimised 14F7 anti-ganglioside Fv suggests a unique tumour-specificity through an unusual H-chain CDR3 architecture
Cited by: 6
Author(s): Kaare Bjerregaard-Andersen, Hedda Johannesen, Noha Abdel-Rahman, J.E. Heggelund, Helene Mykland Hoås, Fana Abraha, Paula A. Bousquet, Lene Støkken Høydahl, D. Burschowsky, Gertrudis Rojas, Stefan Oscarson, Geir Åge Løset, Ute Krengel
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29500-9

Structural determinants of the catalytic mechanism of Plasmodium CCT, a key enzyme of malaria lipid biosynthesis
Cited by: 6
Author(s): Ewelina Guca, Gergely Nagy, F. Hajdu, Lívia Marton, Richárd Izrael, François Hoh, Yinshan Yang, Henri Vial, Beáta G. Vértessy, Jean-François Guichou, Rachel Cerdan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29884-8

FliS/flagellin/FliW heterotrimer couples type III secretion and flagellin homeostasis
Cited by: 16
Author(s): Florian Altegoer, Sampriti Mukherjee, Wieland Steinchen, Patricia Bedrunka, Uwe Linne, Daniel B. Kearns, Gert Bange
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30191-5

Structural Analysis of Glutamine Synthetase from Helicobacter pylori
Cited by: 12
Author(s): Hyun Kyu Joo, Young Woo Park, Young Yoon Jang, Jae Young Lee
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30951-3

Bonsai Gelsolin Survives Heat Induced Denaturation by Forming β-Amyloids which Leach Out Functional Monomer
Cited by: 12
Author(s): Maulik D. Badmalia, Pankaj Sharma, Shiv Pratap Singh Yadav, Samiksha Singh, Neeraj Khatri, Renu Garg, . Ashish
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30796-w

Structural basis for polymerase η–promoted resistance to the anticancer nucleoside analog cytarabine
Cited by: 10
Author(s): Olga Rechkoblit, Jayati Roy Choudhury, Angeliki Buku, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31098-x

Structural basis of cell wall peptidoglycan amidation by the GatD/MurT complex of Staphylococcus aureus
Cited by: 11
Author(s): Erik R. Nöldeke, Lena M. Muckenfuss, Volker Niemann, Anna Müller, Elena Störk, Georg Zocher, Tanja Schneider, Thilo Stehle
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31676-z

Structural Analysis of Redox-sensing Transcriptional Repressor Rex from Thermotoga maritima
Cited by: 7
Author(s): Young Woo Park, Young Yoon Jang, Hyun Kyu Joo, Jae Young Lee
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31812-9

The first crystal structure of a DNA-free nuclear receptor DNA binding domain sheds light on DNA-driven allostery in the glucocorticoid receptor
Cited by: 26
Author(s): Filipp Frank, C. Denise Okafor, Eric A. Ortlund
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31961-x

Structural insights into antigen recognition of an anti-β-(1,6)-β-(1,3)-D-glucan antibody
Cited by: 7
Author(s): Kwang Hoon Sung, Jörn Josewski, Stefan Dübel, Wulf Blankenfeldt, Udo Rau
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31997-z

X-ray structure of full-length human RuvB-Like 2 – mechanistic insights into coupling between ATP binding and mechanical action
Cited by: 15
Author(s): Sara T.N. Silva, José A. Brito, Rocío Arranz, Carlos Óscar S. Sorzano, Christine Ebel, James Doutch, Mark D. Tully, José Marı́a Carazo, José L. Carrascosa, Pedro M. Matías, Tiago M. Bandeiras
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32218-3

Structural cycle of the Thermus thermophilus PilF ATPase: the powering of type IVa pilus assembly
Cited by: 20
Author(s): Richard F. Collins, V. Karuppiah, C. Alistair Siebert, Rana Dajani, Angela Thistlethwaite, Jeremy P. Derrick
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32379-1

Acylated-acyl carrier protein stabilizes the Pseudomonas aeruginosa WaaP lipopolysaccharide heptose kinase
Cited by: 8
Author(s): Naomi N. K. Kreamer, Rajiv Chopra, Ruth E. Caughlan, Doriano Fabbro, Eric Fang, Patricia Gee, Ian Hunt, Min Li, Barbara C. Leon, Lionel Muller, Brian Vash, Angela Woods, Travis Stams, Charles R. Dean, Tsuyoshi Uehara
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32967-1

A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily
Cited by: 5
Author(s): Rachel Fellows, Christopher M. Russo, Catarina S. Silva, Soon Goo Lee, Joseph M. Jez, John D. Chisholm, Chloë Zubieta, Max H. Nanao
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-33479-8

Structural Analysis of an Epitope Candidate of Triosephosphate Isomerase in Opisthorchis viverrini
Cited by: 5
Author(s): Jonghyeon Son, Sulhee Kim, So Eun Kim, Haemin Lee, Myoung Ro Lee, Kwang Yeon Hwang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-33723-1

Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis
Cited by: 9
Author(s): Zoran Štefanić, Marta Narczyk, Goran Mikleušević, Saša Kazazić, Agnieszka Bzowska, Marija Luić
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34171-7

Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis
Cited by: 337
Author(s): Robert N. Kirchdoerfer, Nianshuang Wang, Jesper Pallesen, Daniel Wrapp, Hannah L. Turner, Christopher A. Cottrell, Kizzmekia S. Corbett, Barney S. Graham, Jason S. McLellan, Andrew B. Ward
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34176-2

Direct visualization of DNA baton pass between replication factors bound to PCNA
Cited by: 9
Author(s): Kouta Mayanagi, Sonoko Ishino, Tomoyuki Shirai, Takuji Oyama, Shinichi Kiyonari, Daisuke Kohda, Kosuke Morikawa, Yuji Ishino
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34615-0

Crystal Structure of Human Nocturnin Catalytic Domain
Cited by: 13
Author(s): Michael Estrella, Jin Du, Alexei Korennykh
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35754-0

High resolution X-ray and NMR structural study of human T-cell immunoglobulin and mucin domain containing protein-3
Cited by: 28
Author(s): Amit Gandhi, Walter M. Kim, Zhenyu Sun, Yu‐Hwa Huang, Daniel A. Bonsor, Eric J. Sundberg, Yasuyuki Kondo, Gerhard Wagner, Vijay K. Kuchroo, Gregory A. Petsko, Richard S. Blumberg
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37417-6

Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding
Cited by: 26
Author(s): Magdalena Płotka, Enea Sancho‐Vaello, Sebastian Dorawa, Anna-Karina Kaczorowska, Łukasz P. Kozłowski, Tadeusz Kaczorowski, Kornelius Zeth
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-39687-0

Biochemical and structural characterization of tomato polyphenol oxidases provide novel insights into their substrate specificity
Cited by: 34
Author(s): Ioannis Kampatsikas, Aleksandar Bijelic, Annette Rompel
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40937-4

An Effective Neutralizing Antibody Against Influenza Virus H1N1 from Human B Cells
Cited by: 12
Author(s): Cheng-Chung Lee, Chih-Ya Yang, Long-Yau Lin, Tzu‐Ping Ko, Alarng Hsun-Lang Chang, Stanley Shi-Chung Chang, Andrew H.‐J. Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40879-x

Crystal structure and epitope analysis of house dust mite allergen Der f 21
Cited by: 13
Author(s): Sze Lei Pang, Ken Ho, Jitka Waterman, Robert P. Rambo, Aik-Hong Teh, Indran Mathavan, Gemma Harris, Konstantinos Beis, Yee‐How Say, Matta Sri Anusha, Yang Yie Sio, Fook Tim Chew, Chyan Leong Ng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41354-3

Structural determinants of inhibition of Porphyromonas gingivalis gingipain K by KYT-36, a potent, selective, and bioavailable peptidase inhibitor
Cited by: 14
Author(s): Tibisay Guevara, Arturo Rodríguez-Banqueri, Anna M. Łasica, Mirosław Książek, Barbara Potempa, Jan Potempa, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41498-2

Position 123 of halohydrin dehalogenase HheG plays an important role in stability, activity, and enantioselectivity
Cited by: 12
Author(s): Jennifer Solarczek, Thomas Klünemann, Felix Brandt, Patrick Schrepfer, Mario Wolter, Christoph R. Jacob, Wulf Blankenfeldt, Anett Schallmey
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43577-w

Structural Insights into Catalytic Versatility of the Flavin-dependent Hydroxylase (HpaB) from Escherichia coli
Cited by: 12
Author(s): Xiaolin Shen, Da‐Yong Zhou, Yuheng Lin, Jia Wang, Shuaihua Gao, P. Kandavelu, Hua Zhang, Ruihua Zhang, Bi-Cheng Wang, John P. Rose, Qipeng Yuan, Yajun Yan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43932-x

Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein
Cited by: 18
Author(s): Mariano Genera, Diana Samson, Bertrand Raynal, Ahmed Haouz, Bruno Baron, Catherine Simenel, Raphaël Guérois, Nicolas Wolff, Célia Caillet‐Saguy
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44108-3

FABP1 controls hepatic transport and biotransformation of Δ9-THC
Cited by: 15
Author(s): Matthew W. Elmes, Lauren E. Prentis, L.L. McGoldrick, Christopher J. Giuliano, Joseph Sweeney, Olivia M. Joseph, Joyce Che, Gregory Carbonetti, Keith M. Studholme, Dale G. Deutsch, Robert C. Rizzo, Steven E. Glynn, Martin Kaczocha
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44943-4

Recombinant production, purification, crystallization, and structure analysis of human transforming growth factor β2 in a new conformation
Cited by: 7
Author(s): Laura del Amo-Maestro, Laura Marino‐Puertas, Theodoros Goulas, F. Xavier Gomis‐Rüth
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48019-1

Exit tunnel modulation as resistance mechanism of S. aureus erythromycin resistant mutant
Cited by: 31
Author(s): Y. Halfon, Donna Matzov, Zohar Eyal, Anat Bashan, Ella Zimmerman, Jette Sejer Kjeldgaard, Hanne Ingmer, Ada Yonath
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48850-6

The complex structure of bile salt hydrolase from Lactobacillus salivarius reveals the structural basis of substrate specificity
Cited by: 13
Author(s): Fanxing Xu, Xiaojian Hu, Warispreet Singh, Wenjing Geng, Irina G. Tikhonova, Jun Lin
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-50249-2

Structural insight into glucose repression of the mannitol operon
Cited by: 9
Author(s): Mangyu Choe, Huitae Min, Young Ha Park, Yeon Ran Kim, Jae Sung Woo, Yeong‐Jae Seok
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-51006-1

Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7
Cited by: 24
Author(s): Takafumi Itoh, Emi Nakagawa, Moe Yoda, Akari Nakaichi, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52703-7

Structural insights into mutagenicity of anticancer nucleoside analog cytarabine during replication by DNA polymerase η
Cited by: 5
Author(s): Olga Rechkoblit, Robert E. Johnson, Angeliki Buku, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57675-7

Viscosity-adjustable grease matrices for serial nanocrystallography
Cited by: 11
Author(s): Michihiro Sugahara, K. Motomura, Mamoru Suzuki, Tetsuya Masuda, Yasumasa Joti, Keiji Numata, Kensuke Tono, Makina Yabashi, Tetsuya Ishikawa
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-59446-w

What does fluorine do to a protein? Thermodynamic, and highly-resolved structural insights into fluorine-labelled variants of the cold shock protein
Cited by: 27
Author(s): Hannah Welte, Tiankun Zhou, Xenia Mihajlenko, Olga Mayans, Michael Kovermann
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-64527-x

Structural Basis for PPARα Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives
Cited by: 4
Author(s): Takuya Yoshida, Hiroya Oki, Masamitsu Doi, Syohei Fukuda, Tomohiro Yuzuriha, Ryotaro Tabata, Kenji Ishimoto, Kazuki Kawahara, Tadayasu Ohkubo, Hiroyuki Miyachi, Takefumi Doi, Keisuke Tachibana
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64792-w

The pivot point arginines identified in the β-pinwheel structure of C-terminal domain from Salmonella Typhi DNA Gyrase A subunit
Cited by: 1
Author(s): Ekta Sachdeva, Gurpreet Kaur, Pragya Tiwari, Deepali Gupta, T.P. Singh, A.S. Ethayathulla, Punit Kaur
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65123-9

Aspartate/asparagine-β-hydroxylase: a high-throughput mass spectrometric assay for discovery of small molecule inhibitors
Cited by: 14
Author(s): Lennart Brewitz, Anthony Tumber, Inga Pfeffer, M.A. McDonough, Christopher J. Schofield
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66050-5

A disulfide constrains the ToxR periplasmic domain structure, altering its interactions with ToxS and bile-salts
Cited by: 8
Author(s): Charles R. Midgett, Rachel A. Swindell, Maria Pellegrini, F. Jon Kull
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67069-4

Structural and enzymatic characterisation of the Type III effector NopAA (=GunA) from Sinorhizobium fredii USDA257 reveals a Xyloglucan hydrolase activity
Cited by: 4
Author(s): Jonathan Dorival, Sonia Philys, Elisa Giuntini, Romain Brailly, Jérôme de Ruyck, Mirjam Czjzek, Emanuele G. Biondi, Coralie Bompard
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68502-4

Structural basis of SALM3 dimerization and synaptic adhesion complex formation with PTPσ
Cited by: 3
Author(s): Sudeep Karki, Alexander V. Shkumatov, Sungchul Bae, Hyeonho Kim, Jaewon Ko, Tommi Kajander
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68355-x

The discovery of a new antibody for BRIL-fused GPCR structure determination
Cited by: 19
Author(s): Hikaru Miyagi, Hidetsugu Asada, Mina Suzuki, Yuichi Takahashi, Mai Yasunaga, Chiyo Suno, So Iwata, Junichi Saito
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68612-z

Structure and mechanism of potent bifunctional β-lactam- and homoserine lactone-degrading enzymes from marine microorganisms
Cited by: 10
Author(s): Christopher Selleck, Marcelo Monteiro Pedroso, Liam A. Wilson, Stefan Krco, Esmée Gianna Knaven, Manfredi Miraula, Nataša Mitić, James A. Larrabee, Thomas Brück, Alice M. Clark, Luke W. Guddat
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-73452-y

The crystal structure of mycobacterial epoxide hydrolase A
Cited by: 3
Author(s): Eike C. Schulz, Sara R. Henderson, Boris Illarionov, Thomas Crosskey, Stacey M. Southall, Boris Krichel, Charlotte Uetrecht, Markus Fischer, Matthias Wilmanns
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-78148-x

Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans
Cited by: 2
Author(s): Jun Young Lee, Young Woo Park, Myung Yeon Lee, Kang Hwa Jeong, Jae Young Lee
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-79654-8

Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome
Cited by: 14
Author(s): Qianqian Wang, Vinod K. Vogirala, Aghil Soman, Nikolay V. Berezhnoy, Zhehui Barry Liu, Andrew Barnabas Wong, Nikolay Korolev, Chun‐Jen Su, Sara Sandin, Lars Nordenskiöld
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-80588-4

Discovery of small molecules targeting the tandem tudor domain of the epigenetic factor UHRF1 using fragment-based ligand discovery
Cited by: 14
Author(s): Lyra Chang, James C. Campbell, Idris Raji, Shiva Krishna Reddy Guduru, Prasanna Kandel, Michelle Nguyen, Steven Liu, Kevin Tran, Navneet K Venugopal, Bethany C Taylor, Matthew V. Holt, Nicolas L. Young, Errol L. G. Samuel, Prashi Jain, Conrad Santini, Banumathi Sankaran, Kevin R. MacKenzie, Damian W. Young
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83438-z

Three-dimensional structure of human cyclooxygenase (hCOX)-1
Cited by: 24
Author(s): Morena Miciaccia, Benny Danilo Belviso, Mariaclara Iaselli, Gino Cingolani, Savina Ferorelli, Marianna Cappellari, Paola Loguercio Polosa, Maria Grazia Perrone, Rocco Caliandro, Antonio Scilimati
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-85559-x

Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity
Cited by: 12
Author(s): Naazneen Khan, Tatsuya Arai, Sakae Tsuda, Hidemasa Kondo
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-89785-1

A PROSS-designed extensively mutated estrogen receptor α variant displays enhanced thermal stability while retaining native allosteric regulation and structure
Cited by: 12
Author(s): Mark Kriegel, Hanna J. Wiederanders, Sewar Alkhashrom, Jutta Eichler, Yves A. Muller
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-91596-3

Anthrax toxin translocation complex reveals insight into the lethal factor unfolding and refolding mechanism
Cited by: 5
Author(s): Alexandra J. Machen, Mark T. Fisher, Bret Freudenthal
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-92554-9

Stereoselective synthesis of a 4-⍺-glucoside of valienamine and its X-ray structure in complex with Streptomyces coelicolor GlgE1-V279S
Cited by: 2
Author(s): Anshupriya Si, Thilina D. Jayasinghe, Radhika Thanvi, Sunayana Kapil, Donald R. Ronning, Steven J. Sucheck
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-95123-2

Structure of the master regulator Rns reveals an inhibitor of enterotoxigenic Escherichia coli virulence regulons
Cited by: 9
Author(s): Charles R. Midgett, Kacey Marie Talbot, Jessica L. Day, George P. Munson, F. Jon Kull
Software Mentions: 1
Published: over 3 years ago

10.1038/s41392-021-00712-2

Structural and functional basis for pan-CoV fusion inhibitors against SARS-CoV-2 and its variants with preclinical evaluation
Cited by: 33
Author(s): Shuai Xia, Qiaoshuai Lan, Yun Zhu, Chao Wang, Wei Xu, Yutang Li, Lijue Wang, Fanke Jiao, Jie Zhou, Hua Chen, Qian Wang, Xiujun Cai, Yang Wu, Jie Gao, Huan Liu, Ge Sun, Jan Münch, Frank Kirchhoff, Zhenghong Yuan, Youhua Xie, Fei Sun, Shibo Jiang, Lu Lu
Software Mentions: 1
Published: over 3 years ago

10.1186/1751-0473-7-5

Automatic Fortran to C++ conversion with FABLE
Cited by: 13
Author(s): Ralf W. Grosse‐Kunstleve, Thomas C. Terwilliger, Nicholas K. Sauter, Paul D. Adams
Software Mentions: 1
Published: over 12 years ago

10.1063/1.4984052

Structural and dynamic insights into the role of conformational switching in the nuclease activity of the Xanthomonas albilineans Cas2 in CRISPR-mediated adaptive immunity
Cited by: 8
Author(s): Donghyun Ka, Sung Kyu Hong, Ugeene Jeong, Migyeong Jeong, Nayoung Suh, Jeong‐Yong Suh, Euiyoung Bae
Software Mentions: 1
Published: over 7 years ago

10.1063/1.5092803

Structural and dynamical description of the enzymatic reaction of a phosphohexomutase
Cited by: 7
Author(s): Kyle M. Stiers, Abigail C. Graham, Jian‐She Zhu, David L. Jakeman, Jay C. Nix, Lesa J. Beamer
Software Mentions: 1
Published: over 5 years ago

10.1063/1.5120527

High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures
Cited by: 16
Author(s): Juan Sanchez, Melissa Carrillo, Suraj Pandey, Moraima Noda, Luis Aldama, Denisse Feliz, Elin Claesson, Weixiao Yuan Wahlgren, Gregory Tracy, Phu Duong, Angela C. Nugent, Andrew Field, V. Šrajer, Christopher Kupitz, So Iwata, Eriko Nango, Rie Tanaka, Tomoyuki Tanaka, Luo Fangjia, Kensuke Tono, Shigeki Owada, Sebastian Westenhoff, Marius Schmidt, Emina A. Stojković
Software Mentions: 1
Published: about 5 years ago

10.1063/1.5130582

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin
Cited by: 3
Author(s): Ming Dong, Mackenzie L. Lauro, Timothy J. Koblish, Brian J. Bahnson
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.str.2012.08.011

The CDK9 Tail Determines the Reaction Pathway of Positive Transcription Elongation Factor b
Cited by: 31
Author(s): Sonja Baumli, A.J. Hole, Lan-Zhen Wang, M.E.M. Noble, Jane Endicott
Software Mentions: 1
Published: about 12 years ago

10.1016/j.str.2008.08.007

Structural Analysis of the Interactions Between Paxillin LD Motifs and α-Parvin
Cited by: 35
Author(s): Sonja Lorenz, Ioannis Vakonakis, E.D. Lowe, Iain D. Campbell, M.E.M. Noble, M.K. Hoellerer
Software Mentions: 1
Published: about 16 years ago

10.1016/j.str.2008.05.006

Structural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46
Cited by: 193
Author(s): Natalia V. Murzina, X.Y. Pei, Wei Zhang, Mike Sparkes, Jose Vicente-Garcia, J. Venkatesh Pratap, Stephen H. McLaughlin, Tom Rolef Ben-Shahar, Alain Verreault, Ben F. Luisi, Ernest D. Laue
Software Mentions: 1
Published: over 16 years ago

10.1016/j.str.2014.11.020

Local Error Estimates Dramatically Improve the Utility of Homology Models for Solving Crystal Structures by Molecular Replacement
Cited by: 19
Author(s): G. Bunkóczi, Björn Wallner, Randy J. Read
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.str.2011.11.001

Structure of Ddn, the Deazaflavin-Dependent Nitroreductase from Mycobacterium tuberculosis Involved in Bioreductive Activation of PA-824
Cited by: 77
Author(s): Susan E. Cellitti, Jennifer Shaffer, David H. Jones, Tathagata Mukherjee, Meera Gurumurthy, Badry Bursulaya, Helena I. Boshoff, Inhee Choi, Amit Nayyar, Yong Sok Lee, Joseph Cherian, Pornwaratt Niyomrattanakit, Thomas Dick, Ujjini H. Manjunatha, Clifton E. Barry, Glen Spraggon, Bernhard H. Geierstanger
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.05.002

Structural Characterization of the Chaetomium thermophilum TREX-2 Complex and its Interaction with the mRNA Nuclear Export Factor Mex67:Mtr2
Cited by: 20
Author(s): Lyudmila Dimitrova, Eugene Valkov, Shintaro Aibara, Dirk Flemming, Stephen H. McLaughlin, Ed Hurt, Murray Stewart
Software Mentions: 1
Published: over 9 years ago

10.1016/j.str.2015.12.015

Family-wide Structural Analysis of Human Numb-Associated Protein Kinases
Cited by: 113
Author(s): F.J. Sorrell, M. Szklarz, K.R. Abdul Azeez, J.M. Elkins, Stefan Knapp
Software Mentions: 1
Published: over 8 years ago

10.1016/j.str.2018.03.014

Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1
Cited by: 30
Author(s): Deg Briggs, Erhard Hohenester
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2018.07.011

Insights into Kinesin-1 Activation from the Crystal Structure of KLC2 Bound to JIP3
Cited by: 43
Author(s): J.J.B. Cockburn, Sophie J. Hesketh, Peter O. Mulhair, Maren Thomsen, Mary J. O’Connell, Michael Way
Software Mentions: 1
Published: about 6 years ago

10.1016/j.str.2019.06.008

Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation
Cited by: 4
Author(s): Mads Gabrielsen, Lori Buetow, Dominika Kowalczyk, Wei Zhang, Sachdev S. Sidhu, Danny T. Huang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: about 5 years ago

10.1016/j.str.2019.09.010

Combining Transient Expression and Cryo-EM to Obtain High-Resolution Structures of Luteovirid Particles
Cited by: 22
Author(s): Matthew J. Byrne, John F. C. Steele, Emma L. Hesketh, Miriam Walden, Rebecca Thompson, George P. Lomonossoff, Neil A. Ranson
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.str.2020.01.003

MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling
Cited by: 39
Author(s): Martin C. Moncrieffe, Daniel Bollschweiler, Bing Li, Pawel A. Penczek, Lee Hopkins, Clare E. Bryant, David Klenerman
Software Mentions: 1
Published: over 4 years ago

10.1016/j.str.2020.01.005

Structural Basis for Rab8a Recruitment of RILPL2 via LRRK2 Phosphorylation of Switch 2
Cited by: 51
Author(s): Dieter Waschbüsch, Elena Purlyte, Prosenjit Pal, Emma McGrath, Dario R. Alessi, Amir R. Khan
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 6 years ago

10.3390/toxins12060380

mRNA Interferase Bacillus cereus BC0266 Shows MazF-Like Characteristics Through Structural and Functional Study
Cited by: 4
Author(s): Sung-Min Kang, Ji Sung Koo, In Soo Kim, Do-Hee Kim, Bong-Jin Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12070438

Structural and Functional Insights into the C-terminal Fragment of Insecticidal Vip3A Toxin of Bacillus thuringiensis
Cited by: 17
Author(s): Kun Jiang, Yan Zhang, Zhe Chen, Dalei Wu, Jin Cai, Xiang Gao
Software Mentions: 1
Published: over 4 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: about 4 years ago

10.1038/s41398-018-0258-8

Genome-wide association study identifies glutamate ionotropic receptor GRIA4 as a risk gene for comorbid nicotine dependence and major depression
Cited by: 11
Author(s): Hang Zhou, Zhongshan Cheng, Nick Bass, John H. Krystal, Lindsay A. Farrer, Henry R. Kranzler, Joel Gelernter
Software Mentions: 1
Published: about 6 years ago

10.1101/2020.06.08.141267

Structural basis of a public antibody response to SARS-CoV-2
Cited by: 18
Author(s): Meng Yuan, Hejun Liu, Nicholas C. Wu, Chang-Chun David Lee, Xueyong Zhu, Fangzhu Zhao, Deli Huang, Wenli Yu, Yuanzi Hua, Henry J Tien, Thomas F. Rogers, Elise Landais, Devin Sok, Joseph G. Jardine, Dennis R. Burton, Ian A. Wilson
Software Mentions: 1
Published: over 4 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 4 years ago

10.1101/2021.01.26.428356

Sequence signatures of two IGHV3-53/3-66 public clonotypes to SARS-CoV-2 receptor binding domain
Cited by: 3
Author(s): Timothy J.C. Tan, Meng Yuan, Kaylee Kuzelka, Gilberto C Padron, Jacob R. Beal, Xin Chen, Yiquan Wang, Joel Rivera-Cardona, Xueyong Zhu, Beth M. Stadtmueller, Christopher B. Brooke, Ian A. Wilson, Nicholas C. Wu
Software Mentions: 1
Published: almost 4 years ago

10.1101/2020.09.18.302901

SARS-CoV-2 Nsp1 suppresses host but not viral translation through a bipartite mechanism
Cited by: 34
Author(s): Ming Shi, Long Wang, Pietro Fontana, Setu M. Vora, Ying Zhang, Tian‐Min Fu, Judy Lieberman, Hao Wu
Software Mentions: 1
Published: about 4 years ago

10.1101/2020.09.21.305441

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 4
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 4 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 3 years ago

10.1128/mBio.00492-16

Structures of Pathogenic Fungal FKBP12s Reveal Possible Self-Catalysis Function
Cited by: 30
Author(s): Nam K. Tonthat, Praveen R. Juvvadi, Hengshan Zhang, Soo Chan Lee, Ronald A. Venters, Leonard D. Spicer, William J. Steinbach, Joseph Heitman, Maria A. Schumacher
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00872-16

Molecular Insights into the Fungus-Specific Serine/Threonine Protein Phosphatase Z1 in Candida albicans
Cited by: 21
Author(s): Emily Chen, M.S. Choy, Katalin Petrényi, Zoltán Kónya, Ferenc Erdődi, Viktor Dombrádi, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.01543-16

Emergence of a Potent Multidrug Efflux Pump Variant That Enhances Campylobacter Resistance to Multiple Antibiotics
Cited by: 81
Author(s): Hong Yao, Zhangqi Shen, Yang Wang, Fengru Deng, Dejun Liu, Gaowa Naren, Lei Dai, Chih‐Chia Su, Bing Wang, Shaolin Wang, Congming Wu, Edward Yu, Qijing Zhang, Jianzhong Shen
Software Mentions: 1
Published: about 8 years ago

10.1128/mBio.00225-17

Antibiotic Capture by Bacterial Lipocalins Uncovers an Extracellular Mechanism of Intrinsic Antibiotic Resistance
Cited by: 28
Author(s): Omar M. El-Halfawy, Javier Klett, Rebecca J. Ingram, Slade A. Loutet, M.E.P. Murphy, Sonsoles Martín‐Santamaría, Miguel A. Valvano
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00674-17

Curative Treatment of Severe Gram-Negative Bacterial Infections by a New Class of Antibiotics Targeting LpxC
Cited by: 21
Author(s): Nadine Lemaître, Xiaofei Liang, Javaria Najeeb, Chul‐Jin Lee, Marie Titécat, Emmanuelle Leteurtre, Michel Simonet, Eric J. Toone, Pei Zhou, Florent Sebbane
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.00787-17

Crystal Structures of Two Immune Complexes Identify Determinants for Viral Infectivity and Type-Specific Neutralization of Human Papillomavirus
Cited by: 17
Author(s): Zhihai Li, Daning Wang, Ying Gu, Shuo Song, Maozhou He, Jingjie Shi, Xinlin Liu, Shuangping Wei, Jinjin Li, Hai Yu, Qingbing Zheng, Xiaodong Yan, Timothy S. Baker, Jun Zhang, Jason S. McLellan, Ningshao Xia
Software Mentions: 1
Published: about 7 years ago

10.1128/mBio.01346-18

Structural Analysis of the Interaction between the Bacterial Cell Division Proteins FtsQ and FtsB
Cited by: 38
Author(s): Danguole Kureisaite-Ciziene, Aravindan Varadajan, Stephen H. McLaughlin, Marjolein Glas, Alejandro Montón Silva, Rosa A. Luirink, Carolin Mueller, Tanneke den Blaauwen, Tom N. Grossmann, Joen Luirink, Jan Löwe
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01784-18

The Protozoan Trichomonas vaginalis Targets Bacteria with Laterally Acquired NlpC/P60 Peptidoglycan Hydrolases
Cited by: 19
Author(s): Jully Pinheiro, Jacob Biboy, Waldemar Vollmer, Robert P. Hirt, J.R. Keown, Anastasiia Artuyants, Moyra M. Black, David C. Goldstone, Augusto Simões-Barbosa
Software Mentions: 1
Published: almost 6 years ago

10.1128/mBio.01210-19

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA
Cited by: 26
Author(s): Nazua L. Costa, B. A. Hermann, Vincent Fourmond, M. Faustino, Miguel Teixeira, Oliver Einsle, Catarina M. Paquete, Ricardo O. Louro
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.01497-19

Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO 2 Capture by a Surface-Exposed [Fe 4 S 4 ] Cluster
Cited by: 10
Author(s): Lee A. Rettberg, Wonchull Kang, Martin T. Stiebritz, Caleb J. Hiller, Chi Chung Lee, Jasper Liedtke, Markus W. Ribbe, Yilin Hu
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.00280-20

The HIV-1 Env gp120 Inner Domain Shapes the Phe43 Cavity and the CD4 Binding Site
Cited by: 34
Author(s): Jérémie Prévost, W.D. Tolbert, Halima Medjahed, Rebekah Sherburn, Navid Madani, Daria Zoubchenok, Gabrielle Gendron‐Lepage, Althea Gaffney, Melissa C. Grenier, Sharon Kirk, Natasha Gupta Vergara, Changze Han, Brendan T. Mann, Agnès Laurence Chenine, Adel Ahmed Rashad Ahmed, Irwin M. Chaiken, Frank Kirchhoff, Beatrice H. Hahn, Hillel Haim, Cameron F. Abrams, Amos B. Smith, Joseph Sodroski, Marzena Pazgier, Andrés Finzi
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01303-20

Structure and Multitasking of the c-di-GMP-Sensing Cellulose Secretion Regulator BcsE
Cited by: 12
Author(s): Samira Zouhir, W. Abidi, M. Caleechurn, Petya V. Krasteva
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.01488-20

Structural Characterization of the Essential Cell Division Protein FtsE and Its Interaction with FtsX in Streptococcus pneumoniae
Cited by: 10
Author(s): Martín Alcorlo, Daniel Straume, Joe Lutkenhaus, Leiv Sigve Håvarstein, J.A. Hermoso
Software Mentions: 1
Published: about 4 years ago

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