cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0076983

Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Cited by: 51
Author(s): Kazuki Kato, Ryohei Ishii, Eiji Gotō, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0026845

Crystal Structure of Outer Membrane Protein NMB0315 from Neisseria meningitidis
Cited by: 18
Author(s): Xiangyu Wang, Xue Yang, Chi Yang, Zhenhua Wu, Hui Xu, Yuequan Shen
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0164279

Functional and Structural Characterization of Purine Nucleoside Phosphorylase from Kluyveromyces lactis and Its Potential Applications in Reducing Purine Content in Food
Cited by: 18
Author(s): Durga Mahor, Anu Priyanka, Gandham S. Prasad, Krishan Gopal Thakur
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0093156

Crystal Structure of ORF210 from E. coli O157:H1 Phage CBA120 (TSP1), a Putative Tailspike Protein
Cited by: 16
Author(s): Chen Chen, Patrick Bales, Julia Greenfield, Ryan D. Heselpoth, Daniel Nelson, Osnat Herzberg
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0134576

Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin
Cited by: 24
Author(s): Fengyun Ni, Elena Kondrashkina, Qinghua Wang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0017946

A Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain
Cited by: 43
Author(s): Philip S. Kerry, Juan Ayllón, Margaret Taylor, C. Hass, Alan P. Lewis, Adolfo Garcı́a-Sastre, R. E. Randall, Benjamin G. Hale, Rosemary Russell
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0019589

Crystal Structures of Two Aminoglycoside Kinases Bound with a Eukaryotic Protein Kinase Inhibitor
Cited by: 23
Author(s): D.H. Fong, Bing Xiong, Ji-Young Hwang, Albert M. Berghuis
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0168019

Structural Analysis of Thymidylate Synthase from Kaposi’s Sarcoma-Associated Herpesvirus with the Anticancer Drug Raltitrexed
Cited by: 18
Author(s): Yong Mi Choi, Hyun Ku Yeo, Young Woo Park, Jae Young Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0115995

Crystal Structure of Human Importin-α1 (Rch1), Revealing a Potential Autoinhibition Mode Involving Homodimerization
Cited by: 20
Author(s): Hideyuki Miyatake, Akira Sanjoh, Satoru Unzai, Go Matsuda, Yasutoshi Tatsumi, Yoichi Miyamoto, Naoshi Dohmae, Yoko Aida
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0010482

Crystal Structure of the Neutralizing Llama VHH D7 and Its Mode of HIV-1 gp120 Interaction
Cited by: 32
Author(s): Andreas Hinz, D. Lutje Hulsik, Anna Forsman, Willie W. L. Koh, Hassan Belrhali, Andrea Gorlani, Hans de Haard, Robin A. Weiss, Theo Verrips, Winfríed Weissenhorn
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0010013

The Crystal Structure of PPIL1 Bound to Cyclosporine A Suggests a Binding Mode for a Linear Epitope of the SKIP Protein
Cited by: 23
Author(s): C. Stegmann, Reinhard Lührmann, Markus C. Wahl
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0133370

Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids
Cited by: 30
Author(s): Carlos A. H. Fernandes, Filomena Cardoso, Walter Luís Garrido Cavalcante, Andreimar M. Soares, Maeli Dal-Pai-Silva, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0042775

Structural Insights into the Assembly of CARMA1 and BCL10
Cited by: 34
Author(s): Siwei Li, Xue Yang, Jiushu Shao, Yuequan Shen
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0188620

Tetrahydrocarbazoles are a novel class of potent P-type ATPase inhibitors with antifungal activity
Cited by: 19
Author(s): Maike Bublitz, Lasse Kjellerup, Karen O'Hanlon Cohrt, Sandra Gordon, Anne Louise Mortensen, Johannes Clausen, T. David Pallin, John Bondo Hansen, Anja Thoe Fuglsang, William Dalby‐Brown, Anne-Marie Lund Winther
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0217292

Structural analysis of Cytochrome P450 BM3 mutant M11 in complex with dithiothreitol
Cited by: 4
Author(s): Karla Frydenvang, Marlies C. A. Verkade‐Vreeker, Floor Dohmen, Jan N. M. Commandeur, Maria Rafiq, Osman Mirza, Flemming Steen Jørgensen, Daan P. Geerke
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0034354

Rational Design and Characterization of D-Phe-Pro-D-Arg-Derived Direct Thrombin Inhibitors
Cited by: 22
Author(s): Ana C. Figueiredo, Cristina C. Clement, Sheuli Zakia, Julian A. Gingold, Manfred Philipp, Pedro José Barbosa Pereira
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0071963

The Role of Protein Denaturation Energetics and Molecular Chaperones in the Aggregation and Mistargeting of Mutants Causing Primary Hyperoxaluria Type I
Cited by: 46
Author(s): Noel Mesa‐Torres, Israel Fabelo-Rosa, Débora Riverol, Cristina Yunta, Armando Albert, Eduardo Salido, Ángel L. Pey
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0055697

A Study on the Interaction of Rhodamine B with Methylthioadenosine Phosphorylase Protein Sourced from an Antarctic Soil Metagenomic Library
Cited by: 24
Author(s): Paulina Bartasun, Hubert Cieśliński, A. Bujacz, Anna Wierzbicka-Woś, Józef Kur
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0197635

Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1
Cited by: 9
Author(s): Hye-Yeoung Yun, Jinhyuk Lee, Hyunmin Kim, Hyojung Ryu, Hang‐Sik Shin, Byung‐Ha Oh, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0131218

Serendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases
Cited by: 14
Author(s): M.S. Gadd, Emil Bulatov, A. Ciulli
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0061303

Two Crystal Structures of Bombyx mori Lipoprotein 3 - Structural Characterization of a New 30-kDa Lipoprotein Family Member
Cited by: 6
Author(s): A.J. Pietrzyk, A. Bujacz, Jochen Mueller‐Dieckmann, Małgorzata Łochyńska, Mariusz Jaskólski, G. Bujacz
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0027599

The PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers
Cited by: 39
Author(s): Nada Lallous, Pierre Legrand, A.G. McEwen, Santiago Ramón‐Maiques, Jean‐Pierre Samama, Catherine Birck
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0014165

Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis
Cited by: 25
Author(s): Charles W. Pemble, Perdeep K. Mehta, Smriti Mehra, Zhenmei Li, Amanda Nourse, Richard Lee, Stephen W. White
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0144174

Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells
Cited by: 17
Author(s): Karen M. Plevock, Brian J. Galletta, Kevin C. Slep, Nasser M. Rusan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0187544

Structure and function of a CE4 deacetylase isolated from a marine environment
Cited by: 32
Author(s): Tina R. Tuveng, U. Rothweiler, D.B.R.K. Gupta Udatha, Gustav Vaaje‐Kolstad, Arne O. Smalås, Vincent G. H. Eijsink
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0026743

Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae
Cited by: 17
Author(s): Li He, Xiaoli Zhang, Lijun Bi, Jin He, Tao Jiang
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0151285

Biochemistry and Crystal Structure of Ectoine Synthase: A Metal-Containing Member of the Cupin Superfamily
Cited by: 24
Author(s): Nils Widderich, S. Kobus, Astrid Höppner, Ramona Riclea, Andreas Seubert, Jeroen S. Dickschat, Johann Heider, Sander H. J. Smits, Erhard Bremer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0141543

Structural Characterisation of FabG from Yersinia pestis, a Key Component of Bacterial Fatty Acid Synthesis
Cited by: 13
Author(s): J.D. Nanson, Jade K. Forwood
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0096763

Structure and Inhibition of Mouse Leukotriene C4 Synthase
Cited by: 9
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Shabbir Ahmad, Abdul Aziz Qureshi, Michaela Mårback, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0160890

Structural Basis of Microtubule Destabilization by Potent Auristatin Anti-Mitotics
Cited by: 113
Author(s): Andrew B. Waight, Katja Bargsten, Svetlana O. Doronina, Michel O. Steinmetz, Django Sussman, A.E. Prota
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0070014

Development and Biotechnological Application of a Novel Endoxylanase Family GH10 Identified from Sugarcane Soil Metagenome
Cited by: 28
Author(s): Thabata M. Alvarez, Rosana Goldbeck, C.R. Santos, Douglas Antônio Alvaredo Paixão, Thiago Augusto Gonçalves, João Paulo L. Franco Cairo, Rodrigo Ferreira de Almeida, Isabela de Oliveira Pereira, G. J. Jackson, Júnio Cota, Fernanda Büchli, Ana Paula Citadini, Roberto Ruller, Carla Cristina Polo, Mário de Oliveira Neto, Mário Tyago Murakami, Fábio M. Squina
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0051128

Crystal Structure of Two Anti-Porphyrin Antibodies with Peroxidase Activity
Cited by: 10
Author(s): Victor Muñoz Robles, Jean‐Didier Maréchal, Amel Bahloul, Marie-Agnès Sari, Jean‐Pierre Mahy, Béatrice Golinelli‐Pimpaneau
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0195723

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA
Cited by: 10
Author(s): Wenling An, Yifei Du, Keqiong Ye
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0069125

Structural and Functional Characterisation of TesA - A Novel Lysophospholipase A from Pseudomonas aeruginosa
Cited by: 47
Author(s): Filip Kovačić, Joachim Granzin, Susanne Wilhelm, Biserka Kojić‐Prodić, Renu Batra‐Safferling, Karl‐Erich Jaeger
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0123934

Structural Analysis of the 14-3-3ζ/Chibby Interaction Involved in Wnt/β-Catenin Signaling
Cited by: 23
Author(s): Ryan C. Killoran, Jing‐Song Fan, Daiwen Yang, Brian H. Shilton, Wing‐Yiu Choy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0165139

The Human Mixed Lineage Leukemia 5 (MLL5), a Sequentially and Structurally Divergent SET Domain-Containing Protein with No Intrinsic Catalytic Activity
Cited by: 30
Author(s): S. Mas-y-mas, Marta Barbon, Catherine Teyssier, Hélène Déméné, João E. Carvalho, Louise E. Bird, А. А. Лебедев, Juliana Fattori, Michael Schubert, Christian Dumas, William Bourguet, Albane le Maire
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0066224

An Appended Domain Results in an Unusual Architecture for Malaria Parasite Tryptophanyl-tRNA Synthetase
Cited by: 25
Author(s): Sameena Khan, Ankur Garg, Arvind Sharma, Noelia Camacho, Daria Picchioni, Adélaïde Saint-Léger, Lluı́s Ribas de Pouplana, Manickam Yogavel, Amit Sharma
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0016788

Crystal Structure of a Charge Engineered Human Lysozyme Having Enhanced Bactericidal Activity
Cited by: 27
Author(s): Avinash Gill, Thomas C. Scanlon, Daniel C. Osipovitch, Dean R. Madden, Karl E. Griswold
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0048591

A Divalent Ion Is Crucial in the Structure and Dominant-Negative Function of ID Proteins, a Class of Helix-Loop-Helix Transcription Regulators
Cited by: 19
Author(s): Marie Vivian Wong, Sizun Jiang, Paaventhan Palasingam, Prasanna R. Kolatkar
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0183272

Mpp10 represents a platform for the interaction of multiple factors within the 90S pre-ribosome
Cited by: 15
Author(s): Bebiana Sá-Moura, Markus Kornprobst, Satyavati Kharde, Yasar Luqman Ahmed, Günter Stier, Ruth Kunze, Irmgard Sinning, Ed Hurt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0083110

Structures of Wnt-Antagonist ZNRF3 and Its Complex with R-Spondin 1 and Implications for Signaling
Cited by: 57
Author(s): Weng Chuan Peng, Wim de Lau, P.K. Madoori, Federico Forneris, J.C.M. Granneman, Hans Clevers, Piet Gros
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0213423

High-resolution cryo-EM structures of the E. coli hemolysin ClyA oligomers
Cited by: 33
Author(s): Wei Peng, Marcela de Souza Santos, Yang Li, Diana R. Tomchick, Kim Orth
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0095808

An Engineered Palette of Metal Ion Quenchable Fluorescent Proteins
Cited by: 21
Author(s): Xiaozhen Yu, Marie‐Paule Strub, Travis J. Barnard, Nicholas Noinaj, Grzegorz Piszczek, Susan K. Buchanan, Justin W. Taraska
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0163366

The Panitumumab EGFR Complex Reveals a Binding Mechanism That Overcomes Cetuximab Induced Resistance
Cited by: 51
Author(s): E. Allen Sickmier, Robert J. Kurzeja, Klaus Michelsen, Mukta Vazir, Evelyn Yang, Andrew S. Tasker
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0008044

Structural Diversity of the Active N-Terminal Kinase Domain of p90 Ribosomal S6 Kinase 2
Cited by: 23
Author(s): Margarita Malakhova, Igor Kurinov, Kangdong Liu, Duo Zheng, I. D’Angelo, Jung‐Hyun Shim, Valerie Steinman, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0063095

Structural Basis of the Induced-Fit Mechanism of 1,4-Dihydroxy-2-Naphthoyl Coenzyme A Synthase from the Crotonase Fold Superfamily
Cited by: 5
Author(s): Yueru Sun, Hualin Song, Jie Li, Yan Li, Ming Jiang, Jiahai Zhou, Zhihong Guo
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0052463

Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design
Cited by: 18
Author(s): Matthew M. Moore, Samuel K. Oteng-Pabi, Antonia T. Pandelieva, Stephen L. Mayo, Roberto A. Chica
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0095246

Identification and Characterization of ABA Receptors in Oryza sativa
Cited by: 87
Author(s): Yuan He, Qian Hao, Wenqi Li, Chuangye Yan, Nieng Yan, Ping Yin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0052934

Integron Gene Cassettes: A Repository of Novel Protein Folds with Distinct Interaction Sites
Cited by: 11
Author(s): V. Sureshan, C.N. Deshpande, Yan Boucher, Jeremy E. Koenig, H. W. Stokes, S.J. Harrop, Paul M. G. Curmi, Bridget C. Mabbutt
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0039985

A Common Ca2+-Driven Interdomain Module Governs Eukaryotic NCX Regulation
Cited by: 35
Author(s): Moshe Giladi, Yehezkel Sasson, Xianyang Fang, Reuben Hiller, Tal Buki, Yun‐Xing Wang, Joel A. Hirsch, Daniel Khananshvili
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0056138

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases
Cited by: 18
Author(s): Maly Levy-Assaraf, Milana Voronov-Goldman, Inna Rozman Grinberg, Gloria Weiserman, Linda J. W. Shimon, Sadanari Jindou, Ilya Borovok, Bryan A. White, Edward A. Bayer, Raphael Lamed, Felix Frolow
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0117836

Essential Role of the C-Terminal Helical Domain in Active Site Formation of Selenoprotein MsrA from Clostridium oremlandii
Cited by: 2
Author(s): Eun Hye Lee, Kitaik Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0142107

Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
Cited by: 6
Author(s): Huaidong Zhang, Guimin Zhang, Chaoxiang Yao, Muhammad Junaid, Zhenghui Lu, Houjin Zhang, Yanhe Ma
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0026629

A Novel Dimer-Tetramer Transition Captured by the Crystal Structure of the HIV-1 Nef
Cited by: 13
Author(s): Pankaj Singh, Gaya P. Yadav, Sudeepti Gupta, Anil Kumar Tripathi, Ravishankar Ramachandran, Raj Kamal Tripathi
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0251743

Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin
Cited by: 7
Author(s): Satoshi Inouye, Yuto Sumida, Yuri Tomabechi, Jumpei Taguchi, Mikako Shirouzu, Takamitsu Hosoya
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0196691

A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes
Cited by: 7
Author(s): Leena Penttinen, Chiara Rutanen, Markku Saloheimo, Kristiina Kruus, Juha Rouvinen, Nina Hakulinen
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0115344

The Human Otubain2-Ubiquitin Structure Provides Insights into the Cleavage Specificity of Poly-Ubiquitin-Linkages
Cited by: 28
Author(s): Mikael Altun, Thomas S. Walter, Holger Kramer, Patrick Herr, Alexander Iphöfer, Johan Boström, Yael David, Alia Komsany, Nicola Ternette, Ami Navon, David I. Stuart, Jingshan Ren, Benedikt M. Kessler
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0025226

Structural Basis of Cooperativity in Human UDP-Glucose Dehydrogenase
Cited by: 12
Author(s): V. Rajakannan, Hui Sun Lee, Seon Ha Chong, Han Bong Ryu, Ji Young Bae, Eun Young Whang, Jae-Wan Huh, Sung Woo Cho, Lin Woo Kang, Han Choe, Robert Robinson
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0063161

Structural Insights into the UbiD Protein Family from the Crystal Structure of PA0254 from Pseudomonas aeruginosa
Cited by: 35
Author(s): Agata Jacewicz, Atsushi Izumi, Katharina Brunner, R. Schnell, Günter Schneider
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0034986

Molecular Mechanism Underlying the Interaction of Typical Sac10b Family Proteins with DNA
Cited by: 4
Author(s): Yanfeng Liu, Nan Zhang, Liu Xi, Xinquan Wang, Zhixin Wang, Yuanyuan Chen, Hongwei Yao, Meng Ge, Xian-Ming Pan
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0186286

Insights into the inhibited form of the redox-sensitive SufE-like sulfur acceptor CsdE
Cited by: 0
Author(s): Esther Peña, Juan Aranda, Miguel López-Estepa, Sara Gómez, Fernando Garcés, Miquel Coll, Francisco Fernández, Iñaki Tuñón, M. Cristina Vega
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0120467

Structural and Enzymatic Characterization of the Choline Kinase LicA from Streptococcus pneumoniae
Cited by: 11
Author(s): Lei Wang, Yong-Liang Jiang, Jing-Ren Zhang, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0053567

The 1.6 Å Crystal Structure of Pyranose Dehydrogenase from Agaricus meleagris Rationalizes Substrate Specificity and Reveals a Flavin Intermediate
Cited by: 42
Author(s): T.C. Tan, Oliver Spadiut, Thanyaporn Wongnate, Jeerus Sucharitakul, Iris Krondorfer, Christoph Sygmund, Dietmar Haltrich, Pimchai Chaiyen, Clemens K. Peterbauer, Christina Divne
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0105751

BdcA, a Protein Important for Escherichia coli Biofilm Dispersal, Is a Short-Chain Dehydrogenase/Reductase that Binds Specifically to NADPH
Cited by: 18
Author(s): Dana M. Lord, Ayşe Uzgören Baran, Thomas K. Wood, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0158024

Mutation in the Pro-Peptide Region of a Cysteine Protease Leads to Altered Activity and Specificity—A Structural and Biochemical Approach
Cited by: 8
Author(s): Sruti Dutta, Dibyasree Choudhury, Sumana Roy, J.K. Dattagupta, Sampa Biswas
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0186110

The effect of the pathological V72I, D109N and T190M missense mutations on the molecular structure of α-dystroglycan
Cited by: 4
Author(s): Sonia Covaceuszach, Manuela Bozzi, Maria Giulia Bigotti, Francesca Sciandra, Petr V. Konarev, Andrea Brancaccio, Alberto Cassetta
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0128222

The Flavonoid Luteolin, but Not Luteolin-7-O-Glucoside, Prevents a Transthyretin Mediated Toxic Response
Cited by: 28
Author(s): Irina Iakovleva, Afshan Begum, Małgorzata Pokrzywa, Malin Walfridsson, A. Elisabeth Sauer‐Eriksson, Anders Olofsson
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0065080

Mycobacterium tuberculosis Rv3406 Is a Type II Alkyl Sulfatase Capable of Sulfate Scavenging
Cited by: 17
Author(s): Kimberly M. Sogi, Zev J. Gartner, Mark A. Breidenbach, Mason J. Appel, Michael W. Schelle, Carolyn R. Bertozzi
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0112873

Crystal Structure of Escherichia coli-Expressed Haloarcula marismortui Bacteriorhodopsin I in the Trimeric Form
Cited by: 14
Author(s): Vitaly Shevchenko, Ivan Gushchin, Vitaly Polovinkin, Ekaterina Round, Valentin Borshchevskiy, P. Utrobin, А. Н. Попов, Taras Balandin, Georg Büldt, Valentin Gordeliy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0044934

Mechanistic Insights into Validoxylamine A 7'-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex
Cited by: 18
Author(s): Michael C. Cavalier, Young Sun Yim, Shumpei Asamizu, David Neau, Khaled H. Almabruk, Taifo Mahmud, Yong-Hwan Lee
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0063010

The Carboxy-Terminal αN Helix of the Archaeal XerA Tyrosine Recombinase Is a Molecular Switch to Control Site-Specific Recombination
Cited by: 22
Author(s): Marie-Claude Serre, Toufic El Arnaout, Mark A. Brooks, Dominique Durand, Johnny Lisboa, Noureddine Lazar, Bertrand Raynal, Herman van Tilbeurgh, Sophie Quevillon‐Chéruel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0131788

Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington’s Disease (HD) and Spinocerebellar Ataxias (SCAs)
Cited by: 25
Author(s): Arpita Tawani, Amit Kumar
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0052890

Crystal Structure of Proteus mirabilis Lipase, a Novel Lipase from the Proteus/Psychrophilic Subfamily of Lipase Family I.1
Cited by: 22
Author(s): Tyler P. Korman, James U. Bowie
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0148909

Computing Molecular Devices in L.major through Transcriptome Analysis: Structured Simulation Approach
Cited by: 1
Author(s): Pruthvi Raj Bejugam, Shailza Singh
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0127733

A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases
Cited by: 8
Author(s): E.A. Mullins, Rongxin Shi, Lyle A. Kotsch, Brandt F. Eichman
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0146164

A Streamlined, Automated Protocol for the Production of Milligram Quantities of Untagged Recombinant Rat Lactate Dehydrogenase A Using ÄKTAxpressTM
Cited by: 7
Author(s): Matthew W. Nowicki, Elizabeth A. Blackburn, I.W. McNae, Martin A. Wear
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0113224

Electrostatic Effects in the Folding of the SH3 Domain of the c-Src Tyrosine Kinase: pH-Dependence in 3D-Domain Swapping and Amyloid Formation
Cited by: 24
Author(s): Julio Bacarizo, Sergio Martínez‐Rodríguez, José M. Martín-García, Montserrat Andújar‐Sánchez, Emilia Ortiz‐Salmerón, José L. Neira, A. Cámara-Artigas
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0074735

The Inhibitory Helix Controls the Intramolecular Conformational Switching of the C-Terminus of STIM1
Cited by: 36
Author(s): Boyang Cui, Xue Yang, Siwei Li, Zhijie Lin, Wang Zheng, Dong Cheng, Yuequan Shen
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0187701

Structural and biochemical analysis of atypically low dephosphorylating activity of human dual-specificity phosphatase 28
Cited by: 3
Author(s): Bonsu Ku, Won Pyo Hong, Chae Won Keum, Myeongbin Kim, Hyunyeol Ryu, Donghwan Jeon, Hang‐Sik Shin, Jae-Hoon Kim, Seung Jun Kim, Seong Eon Ryu
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0248385

Characterization of a broadly specific cadaverine N-hydroxylase involved in desferrioxamine B biosynthesis in Streptomyces sviceus
Cited by: 2
Author(s): Lesley-Ann Giddings, G.T. Lountos, Kang Woo Kim, Matthew Brockley, D. Needle, Scott Cherry, Joseph E. Tropea, David S. Waugh
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0101036

A Linear Relationship between Crystal Size and Fragment Binding Time Observed Crystallographically: Implications for Fragment Library Screening Using Acoustic Droplet Ejection
Cited by: 13
Author(s): Krystal Cole, Christian G. Roessler, Elizabeth A. Mulé, Emma J. Benson-Xu, John D. Mullen, Benjamin A. Le, Alanna M. Tieman, Claire Birone, María Brown, Jesús Hernández, Sherry Neff, Daniel E. Williams, Marc Allaire, Allen M. Orville, Robert M. Sweet, Alexei S. Soares
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0171606

Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens
Cited by: 11
Author(s): Julie M. Grondin, Da Duan, Alyssa C. Kirlin, Kento T. Abe, Seth Chitayat, Holly L. Spencer, Craig A. Spencer, Alisha Campigotto, Scott Houliston, C.H. Arrowsmith, John S. Allingham, A.B. Boraston, Steven P. Smith
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0109660

Streptomyces coelicolor SCO4226 Is a Nickel Binding Protein
Cited by: 9
Author(s): Mo Lü, Yong-Liang Jiang, Shu Wang, Hua Jin, Rongguang Zhang, Marie‐Joëlle Virolle, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0202391

Structural analysis of human NHLRC2, mutations of which are associated with FINCA disease
Cited by: 15
Author(s): Ekaterina Biterova, Alexander Olegovich Ignatyev, Johanna Uusimaa, Reetta Hinttala, Lloyd W. Ruddock
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0094835

Crystal Structure of Yeast DNA Polymerase ε Catalytic Domain
Cited by: 39
Author(s): Rinku Jain, Kanagalaghatta R. Rajashankar, Angeliki Buku, Robert E. Johnson, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0038318

Crystal, Solution and In silico Structural Studies of Dihydrodipicolinate Synthase from the Common Grapevine
Cited by: 28
Author(s): Sarah C. Atkinson, Con Dogovski, Matthew T. Downton, F. Grant Pearce, Cyril Reboul, Ashley M. Buckle, Juliet A. Gerrard, Renwick C. J. Dobson, John Wagner, Matthew A. Perugini
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0181705

Crystal structure and functional characterization of an isoaspartyl dipeptidase (CpsIadA) from Colwellia psychrerythraea strain 34H
Cited by: 6
Author(s): Sunha Park, Chang Woo Lee, Sung Gu Lee, Seung Chul Shin, Soo Hyun Kim, Hyun Park, Jun Hyuck Lee
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0037371

Interaction of Rio1 Kinase with Toyocamycin Reveals a Conformational Switch That Controls Oligomeric State and Catalytic Activity
Cited by: 29
Author(s): Irene Kiburu, N. LaRonde-LeBlanc
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0193333

Crystal structures of PCNA mutant proteins defective in gene silencing suggest a novel interaction site on the front face of the PCNA ring
Cited by: 14
Author(s): Christine M. Kondratick, Jacob M. Litman, Kurt Shaffer, M. Todd Washington, Lynne M. Dieckman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0064240

Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor
Cited by: 16
Author(s): I. Biela, N. Tidten-Luksch, F. Immekus, Serghei Glinca, Tran Xuan Phong Nguyen, Hans‐Dieter Gerber, A. Heine, G. Klebe, Klaus Reuter
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0023513

Molecular Mechanism of a Green-Shifted, pH-Dependent Red Fluorescent Protein mKate Variant
Cited by: 10
Author(s): Qi Wang, Laura J. Byrnes, Bo Shui, Ute F. Röhrig, Avtar Singh, Dmitriy M. Chudakov, Sergey Lukyanov, Warren R. Zipfel, Michael I. Kotlikoff, Holger Sondermann
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0059069

X-ray Structure and Molecular Dynamics Simulations of Endoglucanase 3 from Trichoderma harzianum: Structural Organization and Substrate Recognition by Endoglucanases That Lack Cellulose Binding Module
Cited by: 29
Author(s): Érica T. Prates, Ivana Stanković, Rodrigo L. Silveira, M.V. Liberato, Flávio Henrique-Silva, Nei Pereira, Igor Polikarpov, Munir S. Skaf
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0150189

DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis
Cited by: 37
Author(s): S.P. Hancock, Stefano Stella, Duilio Cascio, Reid C. Johnson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0036768

Crystal Structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe
Cited by: 15
Author(s): Donghui Wu, Shanwen Jiang, Matthew W. Bowler, Haiwei Song
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0157691

Crystal Structures of the Global Regulator DasR from Streptomyces coelicolor: Implications for the Allosteric Regulation of GntR/HutC Repressors
Cited by: 19
Author(s): S.B. Fillenberg, Mario D. Friess, С. Körner, Rainer A. Böckmann, Yves A. Muller
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0152611

Crystal Structure of Human Myotubularin-Related Protein 1 Provides Insight into the Structural Basis of Substrate Specificity
Cited by: 7
Author(s): Seoung Min Bong, Kkabi Son, Seungwon Yang, Jae-Won Park, Jea-Won Cho, Kyung‐Tae Kim, Hackyoung Kim, Seung Jun Kim, Young Jun Kim, Byung Il Lee
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0103598

Identification of Polyketide Inhibitors Targeting 3-Dehydroquinate Dehydratase in the Shikimate Pathway of Enterococcus faecalis
Cited by: 9
Author(s): Vivian Wing Ngar Cheung, Bin Xue, Maria Hernandez-Valladares, Maybelle Kho Go, Alvin Tung, A.H. Aguda, Robert Robinson, Wen Shan Yew
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0210298

Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome
Cited by: 8
Author(s): Sang-Hoon Kim, Pyoyoon Kang, Keetae Han, Seon-Woo Lee, Sangkee Rhee
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0157070

Structural and Functional Characterization of a Novel Family of Cyclophilins, the AquaCyps
Cited by: 8
Author(s): R.P. Jakob, Philipp A. M. Schmidpeter, Johanna R. Koch, Franz X. Schmid, Timm Maier
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0024621

Structure of Apo- and Monometalated Forms of NDM-1—A Highly Potent Carbapenem-Hydrolyzing Metallo-β-Lactamase
Cited by: 82
Author(s): Young Chang Kim, C. Tesar, J. Mire, R. Jedrzejczak, Andrew Binkowski, G. Babnigg, James C. Sacchettini, A. Joachimiak
Software Mentions: 1
Published: almost 15 years ago

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Papers Mentioning PHENIX 2,287