cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0131218

Serendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases
Cited by: 14
Author(s): M.S. Gadd, Emil Bulatov, A. Ciulli
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0061303

Two Crystal Structures of Bombyx mori Lipoprotein 3 - Structural Characterization of a New 30-kDa Lipoprotein Family Member
Cited by: 6
Author(s): A.J. Pietrzyk, A. Bujacz, Jochen Mueller‐Dieckmann, Małgorzata Łochyńska, Mariusz Jaskólski, G. Bujacz
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0027599

The PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers
Cited by: 39
Author(s): Nada Lallous, Pierre Legrand, A.G. McEwen, Santiago Ramón‐Maiques, Jean‐Pierre Samama, Catherine Birck
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0014165

Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis
Cited by: 25
Author(s): Charles W. Pemble, Perdeep K. Mehta, Smriti Mehra, Zhenmei Li, Amanda Nourse, Richard Lee, Stephen W. White
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0144174

Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells
Cited by: 17
Author(s): Karen M. Plevock, Brian J. Galletta, Kevin C. Slep, Nasser M. Rusan
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0187544

Structure and function of a CE4 deacetylase isolated from a marine environment
Cited by: 32
Author(s): Tina R. Tuveng, U. Rothweiler, D.B.R.K. Gupta Udatha, Gustav Vaaje‐Kolstad, Arne O. Smalås, Vincent G. H. Eijsink
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0026743

Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae
Cited by: 17
Author(s): Li He, Xiaoli Zhang, Lijun Bi, Jin He, Tao Jiang
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0151285

Biochemistry and Crystal Structure of Ectoine Synthase: A Metal-Containing Member of the Cupin Superfamily
Cited by: 24
Author(s): Nils Widderich, S. Kobus, Astrid Höppner, Ramona Riclea, Andreas Seubert, Jeroen S. Dickschat, Johann Heider, Sander H. J. Smits, Erhard Bremer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0141543

Structural Characterisation of FabG from Yersinia pestis, a Key Component of Bacterial Fatty Acid Synthesis
Cited by: 13
Author(s): J.D. Nanson, Jade K. Forwood
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0096763

Structure and Inhibition of Mouse Leukotriene C4 Synthase
Cited by: 9
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Shabbir Ahmad, Abdul Aziz Qureshi, Michaela Mårback, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0160890

Structural Basis of Microtubule Destabilization by Potent Auristatin Anti-Mitotics
Cited by: 113
Author(s): Andrew B. Waight, Katja Bargsten, Svetlana O. Doronina, Michel O. Steinmetz, Django Sussman, A.E. Prota
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0070014

Development and Biotechnological Application of a Novel Endoxylanase Family GH10 Identified from Sugarcane Soil Metagenome
Cited by: 28
Author(s): Thabata M. Alvarez, Rosana Goldbeck, C.R. Santos, Douglas Antônio Alvaredo Paixão, Thiago Augusto Gonçalves, João Paulo L. Franco Cairo, Rodrigo Ferreira de Almeida, Isabela de Oliveira Pereira, G. J. Jackson, Júnio Cota, Fernanda Büchli, Ana Paula Citadini, Roberto Ruller, Carla Cristina Polo, Mário de Oliveira Neto, Mário Tyago Murakami, Fábio M. Squina
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0051128

Crystal Structure of Two Anti-Porphyrin Antibodies with Peroxidase Activity
Cited by: 10
Author(s): Victor Muñoz Robles, Jean‐Didier Maréchal, Amel Bahloul, Marie-Agnès Sari, Jean‐Pierre Mahy, Béatrice Golinelli‐Pimpaneau
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0195723

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA
Cited by: 10
Author(s): Wenling An, Yifei Du, Keqiong Ye
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0069125

Structural and Functional Characterisation of TesA - A Novel Lysophospholipase A from Pseudomonas aeruginosa
Cited by: 47
Author(s): Filip Kovačić, Joachim Granzin, Susanne Wilhelm, Biserka Kojić‐Prodić, Renu Batra‐Safferling, Karl‐Erich Jaeger
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0123934

Structural Analysis of the 14-3-3ζ/Chibby Interaction Involved in Wnt/β-Catenin Signaling
Cited by: 23
Author(s): Ryan C. Killoran, Jing‐Song Fan, Daiwen Yang, Brian H. Shilton, Wing‐Yiu Choy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0165139

The Human Mixed Lineage Leukemia 5 (MLL5), a Sequentially and Structurally Divergent SET Domain-Containing Protein with No Intrinsic Catalytic Activity
Cited by: 30
Author(s): S. Mas-y-mas, Marta Barbon, Catherine Teyssier, Hélène Déméné, João E. Carvalho, Louise E. Bird, А. А. Лебедев, Juliana Fattori, Michael Schubert, Christian Dumas, William Bourguet, Albane le Maire
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0066224

An Appended Domain Results in an Unusual Architecture for Malaria Parasite Tryptophanyl-tRNA Synthetase
Cited by: 25
Author(s): Sameena Khan, Ankur Garg, Arvind Sharma, Noelia Camacho, Daria Picchioni, Adélaïde Saint-Léger, Lluı́s Ribas de Pouplana, Manickam Yogavel, Amit Sharma
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0016788

Crystal Structure of a Charge Engineered Human Lysozyme Having Enhanced Bactericidal Activity
Cited by: 27
Author(s): Avinash Gill, Thomas C. Scanlon, Daniel C. Osipovitch, Dean R. Madden, Karl E. Griswold
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0048591

A Divalent Ion Is Crucial in the Structure and Dominant-Negative Function of ID Proteins, a Class of Helix-Loop-Helix Transcription Regulators
Cited by: 19
Author(s): Marie Vivian Wong, Sizun Jiang, Paaventhan Palasingam, Prasanna R. Kolatkar
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0183272

Mpp10 represents a platform for the interaction of multiple factors within the 90S pre-ribosome
Cited by: 15
Author(s): Bebiana Sá-Moura, Markus Kornprobst, Satyavati Kharde, Yasar Luqman Ahmed, Günter Stier, Ruth Kunze, Irmgard Sinning, Ed Hurt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0083110

Structures of Wnt-Antagonist ZNRF3 and Its Complex with R-Spondin 1 and Implications for Signaling
Cited by: 57
Author(s): Weng Chuan Peng, Wim de Lau, P.K. Madoori, Federico Forneris, J.C.M. Granneman, Hans Clevers, Piet Gros
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0213423

High-resolution cryo-EM structures of the E. coli hemolysin ClyA oligomers
Cited by: 33
Author(s): Wei Peng, Marcela de Souza Santos, Yang Li, Diana R. Tomchick, Kim Orth
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0095808

An Engineered Palette of Metal Ion Quenchable Fluorescent Proteins
Cited by: 21
Author(s): Xiaozhen Yu, Marie‐Paule Strub, Travis J. Barnard, Nicholas Noinaj, Grzegorz Piszczek, Susan K. Buchanan, Justin W. Taraska
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0163366

The Panitumumab EGFR Complex Reveals a Binding Mechanism That Overcomes Cetuximab Induced Resistance
Cited by: 51
Author(s): E. Allen Sickmier, Robert J. Kurzeja, Klaus Michelsen, Mukta Vazir, Evelyn Yang, Andrew S. Tasker
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0008044

Structural Diversity of the Active N-Terminal Kinase Domain of p90 Ribosomal S6 Kinase 2
Cited by: 23
Author(s): Margarita Malakhova, Igor Kurinov, Kangdong Liu, Duo Zheng, I. D’Angelo, Jung‐Hyun Shim, Valerie Steinman, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0063095

Structural Basis of the Induced-Fit Mechanism of 1,4-Dihydroxy-2-Naphthoyl Coenzyme A Synthase from the Crotonase Fold Superfamily
Cited by: 5
Author(s): Yueru Sun, Hualin Song, Jie Li, Yan Li, Ming Jiang, Jiahai Zhou, Zhihong Guo
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0052463

Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design
Cited by: 18
Author(s): Matthew M. Moore, Samuel K. Oteng-Pabi, Antonia T. Pandelieva, Stephen L. Mayo, Roberto A. Chica
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0095246

Identification and Characterization of ABA Receptors in Oryza sativa
Cited by: 87
Author(s): Yuan He, Qian Hao, Wenqi Li, Chuangye Yan, Nieng Yan, Ping Yin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0052934

Integron Gene Cassettes: A Repository of Novel Protein Folds with Distinct Interaction Sites
Cited by: 11
Author(s): V. Sureshan, C.N. Deshpande, Yan Boucher, Jeremy E. Koenig, H. W. Stokes, S.J. Harrop, Paul M. G. Curmi, Bridget C. Mabbutt
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0144673

Role of Intrinsic and Extrinsic Factors in the Regulation of the Mitotic Checkpoint Kinase Bub1
Cited by: 17
Author(s): Claudia Breit, Tanja Bange, Arsen Petrovic, John R. Weir, Franziska Müller, Doro Vogt, Andrea Musacchio
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0115634

Crystal Structure of Helicobacter pylori Pseudaminic Acid Biosynthesis N-Acetyltransferase PseH: Implications for Substrate Specificity and Catalysis
Cited by: 15
Author(s): Abu Iftiaf Md Salah Ud-Din, Yu C. Liu, Anna Roujeinikova
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0153529

Tetrabromobisphenol A Is an Efficient Stabilizer of the Transthyretin Tetramer
Cited by: 18
Author(s): Irina Iakovleva, Afshan Begum, Kristoffer Brännström, Alexandra Wijsekera, Lina Nilsson, Jin Zhang, Patrik L. Andersson, A. Elisabeth Sauer‐Eriksson, Anders Olofsson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0007165

Crystal Structure of the N-Acetylmannosamine Kinase Domain of GNE
Cited by: 27
Author(s): Yufeng Tong, W. Tempel, L. Nedyalkova, F. Mackenzie, Hee-Won Park
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0038728

Structure Analysis of Entamoeba histolytica DNMT2 (EhMeth)
Cited by: 17
Author(s): Eike C. Schulz, Heide M. Roth, Serge Ankri, Ralf Ficner
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0073123

Directed Evolution of Mycobacterium tuberculosis β-Lactamase Reveals Gatekeeper Residue That Regulates Antibiotic Resistance and Catalytic Efficiency
Cited by: 17
Author(s): C. Feiler, Adam C. Fisher, Jason T. Boock, Matthew Marrichi, Lori Wright, Philipp A. M. Schmidpeter, Wulf Blankenfeldt, Martin S. Pavelka, Matthew P. DeLisa
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0091813

Catalase (KatA) Plays a Role in Protection against Anaerobic Nitric Oxide in Pseudomonas aeruginosa
Cited by: 39
Author(s): Shiming Su, Warunya Panmanee, Jeffrey J. Wilson, Harry K. Mahtani, Qian Li, Bradley D. VanderWielen, Thomas M. Makris, Melanie Rogers, Cameron T. McDaniel, John D. Lipscomb, Randall T. Irvin, Michael J. Schurr, Jack R. Lancaster, Rhett A. Kovall, Daniel J. Hassett
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0049225

Structural Variation and Uniformity among Tetraloop-Receptor Interactions and Other Loop-Helix Interactions in RNA Crystal Structures
Cited by: 26
Author(s): Lili Wu, Dinggeng Chai, M.E. Fraser, Steven Zimmerly
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0109366

Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors
Cited by: 25
Author(s): Weiru Wang, Kristi Elkins, Angela Oh, Yew Kam Ho, Jiansheng Wu, Hong Li, Yang Xiao, Mandy Kwong, Mary Coons, B. Brillantes, Elaine Cheng, Lisa Crocker, Peter S. Dragovich, Deepak Sampath, Xiaozhang Zheng, Kenneth W. Bair, Tom O’Brien, Lisa D. Belmont
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0184932

Structure of the human transcobalamin beta domain in four distinct states
Cited by: 5
Author(s): J.S. Bloch, Markus Ruetz, Bernhard Kräutler, Kaspar P. Locher
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0124330

Structural and Biochemical Analysis of Tyrosine Phosphatase Related to Biofilm Formation A (TpbA) from the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
Cited by: 11
Author(s): Kun Xu, Shanshan Li, Wen Yang, Kan Li, Yujia Bai, Yueyang Xu, Jin Jin, Yingying Wang, Mark Bartlam
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0040854

High Resolution Crystal Structure of the Endo-N-Acetyl-β-D-Glucosaminidase Responsible for the Deglycosylation of Hypocrea jecorina Cellulases
Cited by: 25
Author(s): Ingeborg Stals, Saeid Karkehabadi, Steve Kim, Michael P. Ward, Anita Van Landschoot, Bart Devreese, Mats Sandgren
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0168814

Crystal Structure of an Invasivity-Associated Domain of SdrE in S. aureus
Cited by: 4
Author(s): Miao Luo, Xiang Zhang, Shaocheng Zhang, Hongpeng Zhang, Wei Yang, Zhongliang Zhu, Ke Chen, Lei Bai, Jie Wei, Ailong Huang, Deqiang Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0083419

From Knock-Out Phenotype to Three-Dimensional Structure of a Promising Antibiotic Target from Streptococcus pneumoniae
Cited by: 22
Author(s): Con Dogovski, Michael A. Gorman, Natalia E. Ketaren, Judyta Praszkier, Leanne M. Zammit, Haydyn D. T. Mertens, Gary Bryant, Jiyeon Yang, Michael D. W. Griffin, F. Grant Pearce, Juliet A. Gerrard, Geoffrey B. Jameson, Michael W. Parker, Roy M. Robins-Browne, Matthew A. Perugini
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0067409

Crystal Structures of the Sec1/Munc18 (SM) Protein Vps33, Alone and Bound to the Homotypic Fusion and Vacuolar Protein Sorting (HOPS) Subunit Vps16*
Cited by: 51
Author(s): Richard W. Baker, Philip D. Jeffrey, Frederick M. Hughson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0132004

Potent and Selective Triazole-Based Inhibitors of the Hypoxia-Inducible Factor Prolyl-Hydroxylases with Activity in the Murine Brain
Cited by: 50
Author(s): Mun Chiang Chan, Onur Atasoylu, Emma J. Hodson, Anthony Tumber, Ivanhoe K. H. Leung, Rasheduzzaman Chowdhury, Verónica Gómez-Pérez, Marina Demetriades, Anna M. Rydzik, James P. Holt‐Martyn, Ya-Min Tian, Tammie Bishop, Timothy D. W. Claridge, Akane Kawamura, Christopher W. Pugh, Peter J. Ratcliffe, Christopher J. Schofield
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0012544

Structural and Mutational Analysis of Functional Differentiation between Synaptotagmins-1 and -7
Cited by: 27
Author(s): Mingshan Xue, T.K. Craig, Ok Ho Shin, Liyi Li, Chad A. Brautigam, Diana R. Tomchick, Thomas C. Südhof, Christian Rosenmund, Josep Rizo
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0027466

Structure of the Bro1 Domain Protein BROX and Functional Analyses of the ALIX Bro1 Domain in HIV-1 Budding
Cited by: 27
Author(s): Qianting Zhai, Michael B. Landesman, Howard Robinson, Wesley I. Sundquist, Christopher P. Hill
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0008028

Crystal Structure of Bfr A from Mycobacterium tuberculosis: Incorporation of Selenomethionine Results in Cleavage and Demetallation of Haem
Cited by: 36
Author(s): Vibha Gupta, Rakesh K. Gupta, Garima Khare, Dinakar M. Salunke, Anil K. Tyagi
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0048301

Crystal Structures of Lysine-Preferred Racemases, the Non-Antibiotic Selectable Markers for Transgenic Plants
Cited by: 13
Author(s): Hsin‐Mao Wu, Yi‐Chia Kuan, Chia-Han Chu, Wen-Hwei Hsu, Wen-Ching Wang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0060445

Crystal Structure of KLHL3 in Complex with Cullin3
Cited by: 59
Author(s): Alan X. Ji, Gilbert G. Privé
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0177097

DNA recognition by an RNA-guided bacterial Argonaute
Cited by: 43
Author(s): Kevin W. Doxzen, Jennifer A. Doudna
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0041894

Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis
Cited by: 4
Author(s): Neelanjana Janardan, R.K. Harijan, R.K. Wierenga, M.R.N. Murthy
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0033643

Structural Insights into Human Peroxisome Proliferator Activated Receptor Delta (PPAR-Delta) Selective Ligand Binding
Cited by: 43
Author(s): Fernanda Aparecida Heleno Batista, D.B.B. Trivella, Amanda Bernardes, Joyce Gratieri, Paulo Sérgio Lopes de Oliveira, Ana Carolina M. Figueira, Paul Webb, Igor Polikarpov
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0050329

NADP+ Binding to the Regulatory Subunit of Methionine Adenosyltransferase II Increases Intersubunit Binding Affinity in the Hetero-Trimer
Cited by: 18
Author(s): Beatriz González, Federico Garrido, Rebeca Ortega, Marta Martı́nez-Júlvez, Ainhoa Revilla-Guarinos, Yolanda Pérez-Pertejo, Adrián Velázquez‐Campoy, Julia Sanz‐Aparicio, Marı́a A. Pajares
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0161020

Streptococcus pneumoniae TIGR4 Flavodoxin: Structural and Biophysical Characterization of a Novel Drug Target
Cited by: 12
Author(s): Ángela Rodríguez-Cárdenas, Adriana L. Rojas, María Conde-Giménez, Adrián Velázquez‐Campoy, R. Hurtado‐Guerrero, Javier Sancho
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0208850

Structural and functional insight into serine hydroxymethyltransferase from Helicobacter pylori
Cited by: 6
Author(s): A. Sodolescu, Cyril Dian, Laurent Terradot, Latifa Bouzhir-Sima, Roxane Lestini, Hannu Myllykallio, Stéphane Skouloubris, Ursula Liebl
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0149113

Structural Study of the HD-PTP Bro1 Domain in a Complex with the Core Region of STAM2, a Subunit of ESCRT-0
Cited by: 20
Author(s): Juhyeon Lee, Kyoung-Jin Oh, Dong Hoon Lee, Bo Yeon Kim, Joon Sig Choi, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0086010

Crystallographic and Biochemical Analysis of the Mouse Poly(ADP-Ribose) Glycohydrolase
Cited by: 23
Author(s): Zhizhi Wang, Jean Philippe Gagné, Guy G. Poirier, Wenqing Xu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0019245

LILRA3 Binds Both Classical and Non-Classical HLA Class I Molecules but with Reduced Affinities Compared to LILRB1/LILRB2: Structural Evidence
Cited by: 37
Author(s): Myongchol Ryu, Yong Chen, Jianxun Qi, Jun Li, Zheng Fan, Gol Nam, Yi Shi, Hao Cheng, George F. Gao
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0118683

Lpg0393 of Legionella pneumophila Is a Guanine-Nucleotide Exchange Factor for Rab5, Rab21 and Rab22
Cited by: 15
Author(s): Youn Soo Sohn, Hang‐Sik Shin, Wei Sun Park, Jianning Ge, Chan-Hee Kim, Bok Luel Lee, Won Do Heo, Jae U. Jung, Daniel J. Rigden, Byung‐Ha Oh
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0060649

Homopiperazine Derivatives as a Novel Class of Proteasome Inhibitors with a Unique Mode of Proteasome Binding
Cited by: 13
Author(s): Jiro Kikuchi, Naoya Shibayama, Satoshi Yamada, Taeko Wada, Masaharu Nobuyoshi, Tohru Izumi, Miyuki Akutsu, Yasuhiko Kano, Kanako Sugiyama, Mio Ohki, Sam-Yong Park, Yusuke Furukawa
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0118548

Structural and Functional Investigation of Flavin Binding Center of the NqrC Subunit of Sodium-Translocating NADH:Quinone Oxidoreductase from Vibrio harveyi
Cited by: 14
Author(s): Valentin Borshchevskiy, Ekaterina Round, Yulia V. Bertsova, Vitaly Polovinkin, Ivan Gushchin, Andrii Ishchenko, Kirill Kovalev, Alexey Mishin, Г.С. Качалова, А. Н. Попов, Alexander V. Bogachev, Valentin Gordeliy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0067214

Identification of a Novel TGF-β-Binding Site in the Zona Pellucida C-terminal (ZP-C) Domain of TGF-β-Receptor-3 (TGFR-3)
Cited by: 32
Author(s): Uschi Diestel, Marcus Resch, Kathrin Meinhardt, Sigrid Weiler, Tina V. Hellmann, Thomas D. Mueller, J. Curtis Nickel, Jutta Eichler, Yves A. Muller
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0131523

Evidence for the Dimerization-Mediated Catalysis of Methionine Sulfoxide Reductase A from Clostridium oremlandii
Cited by: 6
Author(s): Eun Hye Lee, Kitaik Lee, Geun Hee Kwak, Yeon Seung Park, Kong Joo Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0221975

Crystal structure of L-aspartate aminotransferase from Schizosaccharomyces pombe
Cited by: 5
Author(s): Soo Yeon Jeong, Hyeonseok Jin, Jeong Ho Chang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0199942

Crystal structure of the C-terminal four-helix bundle of the potassium channel KCa3.1
Cited by: 5
Author(s): Tianyang Ji, Senena Corbalán-Garcı́a, Stevan R. Hubbard
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0097475

Crystal Structure of the Open State of the Neisseria gonorrhoeae MtrE Outer Membrane Channel
Cited by: 49
Author(s): Hanlun Lei, Tsung‐Han Chou, Chih‐Chia Su, Jani Reddy Bolla, Nitin Kumar, Abhijith Radhakrishnan, Feng Long, Jared A. Delmar, V. L. Sylvia, Kanagalaghatta R. Rajashankar, William M. Shafer, Edward Yu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0020505

Circular Permutation of Red Fluorescent Proteins
Cited by: 32
Author(s): Bo Shui, Qi Wang, Frank Lee, Laura J. Byrnes, Dmitriy M. Chudakov, Sergey Lukyanov, Holger Sondermann, Michael I. Kotlikoff
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0044211

Structural Basis for the dsRNA Specificity of the Lassa Virus NP Exonuclease
Cited by: 53
Author(s): Kathryn M. Hastie, Liam B. King, Michelle Zandonatti, Erica Ollmann Saphire
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0149846

Crystal Structure of Alcohol Oxidase from Pichia pastoris
Cited by: 38
Author(s): Christian A. Koch, Piotr Neumann, Oliver Valerius, Ivo Feußner, Ralf Ficner
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0063047

N-Terminal Helix-Cap in α-Helix 2 Modulates β-State Misfolding in Rabbit and Hamster Prion Proteins
Cited by: 18
Author(s): Braden Sweeting, Eric D. Brown, Mashiat Khan, Avijit Chakrabartty, E.F. Pai
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0067901

Function and X-Ray crystal structure of Escherichia coli YfdE
Cited by: 11
Author(s): E.A. Mullins, Kelly L. Sullivan, T.J. Kappock
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0187295

Crystal structure of dipeptidyl peptidase III from the human gut symbiont Bacteroides thetaiotaomicron
Cited by: 14
Author(s): Igor Sabljić, Nevenka Meštrović, Bojana Vukelić, Peter Macheroux, Karl Gruber, Marija Luić, Marija Abramić
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0125946

Structural Basis Underlying the Binding Preference of Human Galectins-1, -3 and -7 for Galβ1-3/4GlcNAc
Cited by: 36
Author(s): T.J. Hsieh, Hong-Shiang Lin, Zhijay Tu, Bo-Shun Huang, Shang-Chuen Wu, Chun‐Hung Lin
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0074748

Structure of the NheA Component of the Nhe Toxin from Bacillus cereus: Implications for Function
Cited by: 57
Author(s): Magdah Ganash, Danh Phung, Svetlana E. Sedelnikova, Toril Lindbäck, Per Einar Granum, Peter J. Artymiuk
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0039688

Dimerization and Heme Binding Are Conserved in Amphibian and Starfish Homologues of the microRNA Processing Protein DGCR8
Cited by: 20
Author(s): Rachel Senturia, Arthur Laganowsky, Ian Barr, Brooke D. Scheidemantle, Feng Guo
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0211432

R pyocin tail fiber structure reveals a receptor-binding domain with a lectin fold
Cited by: 20
Author(s): Adam J. Salazar, Mukul Sherekar, Jennifer Tsai, James C. Sacchettini
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0084973

Comparative Structural and Functional Analysis of Orthomyxovirus Polymerase Cap-Snatching Domains
Cited by: 17
Author(s): Delphine Guilligay, Jan Kadlec, Thibaut Crépin, T. Lunardi, Denis Bouvier, Georg Kochs, Rob W.H. Ruigrok, Stephen Cusack
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0214481

Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com
Cited by: 4
Author(s): Martyna Nowacka, Humberto Fernandes, Agnieszka Kiliszek, Agata Bernat, Grzegorz Łach, Janusz M. Bujnicki
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0122447

The 1.7 Å X-Ray Crystal Structure of the Porcine Factor VIII C2 Domain and Binding Analysis to Anti-Human C2 Domain Antibodies and Phospholipid Surfaces
Cited by: 8
Author(s): Caileen M. Brison, Steven M. Mullen, Michelle E. Wuerth, Kira A. Podolsky, M. Katherine Cook, Jacob Herman, Justin D. Walter, Shannon L. Meeks, P. Clint Spiegel
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0103650

Chemically Modified Peptide Scaffolds Target the CFTR-Associated Ligand PDZ Domain
Cited by: 16
Author(s): J.F. Amacher, Ruizhi Zhao, Mark R. Spaller, Dean R. Madden
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0206589

A comparative structural analysis of the surface properties of asco-laccases
Cited by: 19
Author(s): Heidi A. Ernst, Lise J. Jørgensen, Christian Bukh, Klaus Piontek, Dietmar A. Plattner, Lars Østergaard, Sine Larsen, Morten J. Bjerrum
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0086651

The Neutron Structure of Urate Oxidase Resolves a Long-Standing Mechanistic Conundrum and Reveals Unexpected Changes in Protonation
Cited by: 25
Author(s): Esko Oksanen, Matthew P. Blakeley, Mohamed El-Hajji, Ulf Ryde, Monika Budayova‐Spano
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0043045

Structure and Flexibility of the C-Ring in the Electromotor of Rotary FoF1-ATPase of Pea Chloroplasts
Cited by: 27
Author(s): Shai Saroussi, Maya Schushan, Nir Ben‐Tal, Wolfgang Junge, Nathan Nelson
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0056363

Using Haloarcula marismortui Bacteriorhodopsin as a Fusion Tag for Enhancing and Visible Expression of Integral Membrane Proteins in Escherichia coli
Cited by: 39
Author(s): Min Hsu, Tsung Fu Yu, Chia Cheng Chou, Hsu Yuan Fu, Chii‐Shen Yang, Andrew H.J. Wang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0161022

The Tp0684 (MglB-2) Lipoprotein of Treponema pallidum: A Glucose-Binding Protein with Divergent Topology
Cited by: 14
Author(s): Chad A. Brautigam, Ranjit K. Deka, Wei Z. Liu, Michael V. Norgard
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0034202

Structural Insights into TIR Domain Specificity of the Bridging Adaptor Mal in TLR4 Signaling
Cited by: 57
Author(s): Zhijie Lin, Jing Lü, Weihong Zhou, Yuequan Shen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0062446

Tetramerization Reinforces the Dimer Interface of MnSOD
Cited by: 14
Author(s): Yinghong Sheng, Armando Durazo, Mikhail Schumacher, Edith Butler Gralla, Duilio Cascio, Diane E. Cabelli, Joan Selverstone Valentine
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0097903

Crystal Structure of the Neisseria gonorrhoeae MtrD Inner Membrane Multidrug Efflux Pump
Cited by: 64
Author(s): Jani Reddy Bolla, Chih‐Chia Su, V. L. Sylvia, Abhijith Radhakrishnan, Nitin Kumar, Feng Long, Tsung‐Han Chou, Jared A. Delmar, Hanlun Lei, Kanagalaghatta R. Rajashankar, William M. Shafer, Edward Yu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0127149

Structural Basis for the Inhibition of Helicobacter pylori α-Carbonic Anhydrase by Sulfonamides
Cited by: 41
Author(s): Joyanta K. Modakh, Yu C. Liu, Mayra A. Machuca, Claudiu T. Supuran, Anna Roujeinikova
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0032033

Structural and Functional Analysis of Validoxylamine A 7′-phosphate Synthase ValL Involved in Validamycin A Biosynthesis
Cited by: 16
Author(s): Lina Zheng, Xiang Zhou, Huaidong Zhang, Xiaofeng Ji, Lei Li, Lin Huang, Linquan Bai, Houjin Zhang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0124056

The Crystal Structure of D-Threonine Aldolase from Alcaligenes xylosoxidans Provides Insight into a Metal Ion Assisted PLP-Dependent Mechanism
Cited by: 17
Author(s): M. Uhl, Gustav Oberdorfer, Georg Steinkellner, Lina Riegler-Berket, Daniel Mink, Friso van Assema, Martin Schürmann, Karl Gruber
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0158749

Crystal Structure of Bacillus subtilis Cysteine Desulfurase SufS and Its Dynamic Interaction with Frataxin and Scaffold Protein SufU
Cited by: 25
Author(s): Bastian Blauenburg, Andreas Mielcarek, Florian Altegoer, Christopher D. Fage, Uwe Linne, Gert Bange, Mohamed A. Marahiel
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0038723

Structure of a Murine Norovirus NS6 Protease-Product Complex Revealed by Adventitious Crystallisation
Cited by: 25
Author(s): Eoin N Leen, Gabriela Baeza, Stephen Curry
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0015345

A Novel Dimeric Inhibitor Targeting Beta2GPI in Beta2GPI/Antibody Complexes Implicated in Antiphospholipid Syndrome
Cited by: 28
Author(s): Alexey Kolyada, Changjin Lee, Alfredo De Biasio, Natalia Beglova
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0048427

Structure-Based Engineering Increased the Catalytic Turnover Rate of a Novel Phenazine Prenyltransferase
Cited by: 23
Author(s): Georg Zocher, Orwah Saleh, Joel B. Heim, D.A. Herbst, Lutz Heide, Thilo Stehle
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0019521

Comparative Structural Analysis of Lipid Binding START Domains
Cited by: 114
Author(s): A.G. Thorsell, Wen‐Hwa Lee, C. Persson, M.I. Siponen, M.E. Nilsson, R.D. Busam, T. Kotenyova, H. Schüler, L. Lehtiö
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0009222

Structural Ordering of Disordered Ligand-Binding Loops of Biotin Protein Ligase into Active Conformations as a Consequence of Dehydration
Cited by: 28
Author(s): Vibha Gupta, Rakesh K. Gupta, Garima Khare, Dinakar M. Salunke, Avadhesha Surolia, Anil K. Tyagi
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0122466

Rheostat Re-Wired: Alternative Hypotheses for the Control of Thioredoxin Reduction Potentials
Cited by: 13
Author(s): Kathryn D. Bewley, Mishtu Dey, Rebekah E. Bjork, Sangha Mitra, Sarah E. Chobot, Catherine L. Drennan, Sean J. Elliott
Software Mentions: 1
Published: over 11 years ago

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Papers Mentioning PHENIX 2,287