cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0071451

Structures of Streptococcus pneumoniae PiaA and Its Complex with Ferrichrome Reveal Insights into the Substrate Binding and Release of High Affinity Iron Transporters
Cited by: 24
Author(s): Cheng Wang, Qiong Li, Yong-Liang Jiang, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0099349

Cyanuric Acid Hydrolase from Azorhizobium caulinodans ORS 571: Crystal Structure and Insights into a New Class of Ser-Lys Dyad Proteins
Cited by: 12
Author(s): Chong-Min Kyung, Ke Shi, Jennifer L. Seffernick, Anthony G. Dodge, Lawrence P. Wackett, Hideki Aihara
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0039985

A Common Ca2+-Driven Interdomain Module Governs Eukaryotic NCX Regulation
Cited by: 35
Author(s): Moshe Giladi, Yehezkel Sasson, Xianyang Fang, Reuben Hiller, Tal Buki, Yun‐Xing Wang, Joel A. Hirsch, Daniel Khananshvili
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0056138

Crystal Structure of an Uncommon Cellulosome-Related Protein Module from Ruminococcus flavefaciens That Resembles Papain-Like Cysteine Peptidases
Cited by: 18
Author(s): Maly Levy-Assaraf, Milana Voronov-Goldman, Inna Rozman Grinberg, Gloria Weiserman, Linda J. W. Shimon, Sadanari Jindou, Ilya Borovok, Bryan A. White, Edward A. Bayer, Raphael Lamed, Felix Frolow
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0117836

Essential Role of the C-Terminal Helical Domain in Active Site Formation of Selenoprotein MsrA from Clostridium oremlandii
Cited by: 2
Author(s): Eun Hye Lee, Kitaik Lee, Kwang Yeon Hwang, Hwa Young Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0142107

Structural Insight of a Trimodular Halophilic Cellulase with a Family 46 Carbohydrate-Binding Module
Cited by: 6
Author(s): Huaidong Zhang, Guimin Zhang, Chaoxiang Yao, Muhammad Junaid, Zhenghui Lu, Houjin Zhang, Yanhe Ma
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0026629

A Novel Dimer-Tetramer Transition Captured by the Crystal Structure of the HIV-1 Nef
Cited by: 13
Author(s): Pankaj Singh, Gaya P. Yadav, Sudeepti Gupta, Anil Kumar Tripathi, Ravishankar Ramachandran, Raj Kamal Tripathi
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0251743

Chiral deaza-coelenterazine analogs for probing a substrate-binding site in the Ca2+-binding photoprotein aequorin
Cited by: 7
Author(s): Satoshi Inouye, Yuto Sumida, Yuri Tomabechi, Jumpei Taguchi, Mikako Shirouzu, Takamitsu Hosoya
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0196691

A new crystal form of Aspergillus oryzae catechol oxidase and evaluation of copper site structures in coupled binuclear copper enzymes
Cited by: 7
Author(s): Leena Penttinen, Chiara Rutanen, Markku Saloheimo, Kristiina Kruus, Juha Rouvinen, Nina Hakulinen
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0115344

The Human Otubain2-Ubiquitin Structure Provides Insights into the Cleavage Specificity of Poly-Ubiquitin-Linkages
Cited by: 28
Author(s): Mikael Altun, Thomas S. Walter, Holger Kramer, Patrick Herr, Alexander Iphöfer, Johan Boström, Yael David, Alia Komsany, Nicola Ternette, Ami Navon, David I. Stuart, Jingshan Ren, Benedikt M. Kessler
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0025226

Structural Basis of Cooperativity in Human UDP-Glucose Dehydrogenase
Cited by: 12
Author(s): V. Rajakannan, Hui Sun Lee, Seon Ha Chong, Han Bong Ryu, Ji Young Bae, Eun Young Whang, Jae-Wan Huh, Sung Woo Cho, Lin Woo Kang, Han Choe, Robert Robinson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0063161

Structural Insights into the UbiD Protein Family from the Crystal Structure of PA0254 from Pseudomonas aeruginosa
Cited by: 35
Author(s): Agata Jacewicz, Atsushi Izumi, Katharina Brunner, R. Schnell, Günter Schneider
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0034986

Molecular Mechanism Underlying the Interaction of Typical Sac10b Family Proteins with DNA
Cited by: 4
Author(s): Yanfeng Liu, Nan Zhang, Liu Xi, Xinquan Wang, Zhixin Wang, Yuanyuan Chen, Hongwei Yao, Meng Ge, Xian-Ming Pan
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0186286

Insights into the inhibited form of the redox-sensitive SufE-like sulfur acceptor CsdE
Cited by: 0
Author(s): Esther Peña, Juan Aranda, Miguel López-Estepa, Sara Gómez, Fernando Garcés, Miquel Coll, Francisco Fernández, Iñaki Tuñón, M. Cristina Vega
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0120467

Structural and Enzymatic Characterization of the Choline Kinase LicA from Streptococcus pneumoniae
Cited by: 11
Author(s): Lei Wang, Yong-Liang Jiang, Jing-Ren Zhang, Cong‐Zhao Zhou, Yuxing Chen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0053567

The 1.6 Å Crystal Structure of Pyranose Dehydrogenase from Agaricus meleagris Rationalizes Substrate Specificity and Reveals a Flavin Intermediate
Cited by: 42
Author(s): T.C. Tan, Oliver Spadiut, Thanyaporn Wongnate, Jeerus Sucharitakul, Iris Krondorfer, Christoph Sygmund, Dietmar Haltrich, Pimchai Chaiyen, Clemens K. Peterbauer, Christina Divne
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0105751

BdcA, a Protein Important for Escherichia coli Biofilm Dispersal, Is a Short-Chain Dehydrogenase/Reductase that Binds Specifically to NADPH
Cited by: 18
Author(s): Dana M. Lord, Ayşe Uzgören Baran, Thomas K. Wood, Wolfgang Peti, Rebecca Page
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0158024

Mutation in the Pro-Peptide Region of a Cysteine Protease Leads to Altered Activity and Specificity—A Structural and Biochemical Approach
Cited by: 8
Author(s): Sruti Dutta, Dibyasree Choudhury, Sumana Roy, J.K. Dattagupta, Sampa Biswas
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0186110

The effect of the pathological V72I, D109N and T190M missense mutations on the molecular structure of α-dystroglycan
Cited by: 4
Author(s): Sonia Covaceuszach, Manuela Bozzi, Maria Giulia Bigotti, Francesca Sciandra, Petr V. Konarev, Andrea Brancaccio, Alberto Cassetta
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0128222

The Flavonoid Luteolin, but Not Luteolin-7-O-Glucoside, Prevents a Transthyretin Mediated Toxic Response
Cited by: 28
Author(s): Irina Iakovleva, Afshan Begum, Małgorzata Pokrzywa, Malin Walfridsson, A. Elisabeth Sauer‐Eriksson, Anders Olofsson
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0065080

Mycobacterium tuberculosis Rv3406 Is a Type II Alkyl Sulfatase Capable of Sulfate Scavenging
Cited by: 17
Author(s): Kimberly M. Sogi, Zev J. Gartner, Mark A. Breidenbach, Mason J. Appel, Michael W. Schelle, Carolyn R. Bertozzi
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0112873

Crystal Structure of Escherichia coli-Expressed Haloarcula marismortui Bacteriorhodopsin I in the Trimeric Form
Cited by: 14
Author(s): Vitaly Shevchenko, Ivan Gushchin, Vitaly Polovinkin, Ekaterina Round, Valentin Borshchevskiy, P. Utrobin, А. Н. Попов, Taras Balandin, Georg Büldt, Valentin Gordeliy
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0044934

Mechanistic Insights into Validoxylamine A 7'-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex
Cited by: 18
Author(s): Michael C. Cavalier, Young Sun Yim, Shumpei Asamizu, David Neau, Khaled H. Almabruk, Taifo Mahmud, Yong-Hwan Lee
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0063010

The Carboxy-Terminal αN Helix of the Archaeal XerA Tyrosine Recombinase Is a Molecular Switch to Control Site-Specific Recombination
Cited by: 22
Author(s): Marie-Claude Serre, Toufic El Arnaout, Mark A. Brooks, Dominique Durand, Johnny Lisboa, Noureddine Lazar, Bertrand Raynal, Herman van Tilbeurgh, Sophie Quevillon‐Chéruel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0131788

Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington’s Disease (HD) and Spinocerebellar Ataxias (SCAs)
Cited by: 25
Author(s): Arpita Tawani, Amit Kumar
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0052890

Crystal Structure of Proteus mirabilis Lipase, a Novel Lipase from the Proteus/Psychrophilic Subfamily of Lipase Family I.1
Cited by: 22
Author(s): Tyler P. Korman, James U. Bowie
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0148909

Computing Molecular Devices in L.major through Transcriptome Analysis: Structured Simulation Approach
Cited by: 1
Author(s): Pruthvi Raj Bejugam, Shailza Singh
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0127733

A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases
Cited by: 8
Author(s): E.A. Mullins, Rongxin Shi, Lyle A. Kotsch, Brandt F. Eichman
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0146164

A Streamlined, Automated Protocol for the Production of Milligram Quantities of Untagged Recombinant Rat Lactate Dehydrogenase A Using ÄKTAxpressTM
Cited by: 7
Author(s): Matthew W. Nowicki, Elizabeth A. Blackburn, I.W. McNae, Martin A. Wear
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0113224

Electrostatic Effects in the Folding of the SH3 Domain of the c-Src Tyrosine Kinase: pH-Dependence in 3D-Domain Swapping and Amyloid Formation
Cited by: 24
Author(s): Julio Bacarizo, Sergio Martínez‐Rodríguez, José M. Martín-García, Montserrat Andújar‐Sánchez, Emilia Ortiz‐Salmerón, José L. Neira, A. Cámara-Artigas
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0074735

The Inhibitory Helix Controls the Intramolecular Conformational Switching of the C-Terminus of STIM1
Cited by: 36
Author(s): Boyang Cui, Xue Yang, Siwei Li, Zhijie Lin, Wang Zheng, Dong Cheng, Yuequan Shen
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0187701

Structural and biochemical analysis of atypically low dephosphorylating activity of human dual-specificity phosphatase 28
Cited by: 3
Author(s): Bonsu Ku, Won Pyo Hong, Chae Won Keum, Myeongbin Kim, Hyunyeol Ryu, Donghwan Jeon, Hang‐Sik Shin, Jae-Hoon Kim, Seung Jun Kim, Seong Eon Ryu
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0248385

Characterization of a broadly specific cadaverine N-hydroxylase involved in desferrioxamine B biosynthesis in Streptomyces sviceus
Cited by: 2
Author(s): Lesley-Ann Giddings, G.T. Lountos, Kang Woo Kim, Matthew Brockley, D. Needle, Scott Cherry, Joseph E. Tropea, David S. Waugh
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0101036

A Linear Relationship between Crystal Size and Fragment Binding Time Observed Crystallographically: Implications for Fragment Library Screening Using Acoustic Droplet Ejection
Cited by: 13
Author(s): Krystal Cole, Christian G. Roessler, Elizabeth A. Mulé, Emma J. Benson-Xu, John D. Mullen, Benjamin A. Le, Alanna M. Tieman, Claire Birone, María Brown, Jesús Hernández, Sherry Neff, Daniel E. Williams, Marc Allaire, Allen M. Orville, Robert M. Sweet, Alexei S. Soares
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0171606

Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens
Cited by: 11
Author(s): Julie M. Grondin, Da Duan, Alyssa C. Kirlin, Kento T. Abe, Seth Chitayat, Holly L. Spencer, Craig A. Spencer, Alisha Campigotto, Scott Houliston, C.H. Arrowsmith, John S. Allingham, A.B. Boraston, Steven P. Smith
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0109660

Streptomyces coelicolor SCO4226 Is a Nickel Binding Protein
Cited by: 9
Author(s): Mo Lü, Yong-Liang Jiang, Shu Wang, Hua Jin, Rongguang Zhang, Marie‐Joëlle Virolle, Yuxing Chen, Cong‐Zhao Zhou
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0202391

Structural analysis of human NHLRC2, mutations of which are associated with FINCA disease
Cited by: 15
Author(s): Ekaterina Biterova, Alexander Olegovich Ignatyev, Johanna Uusimaa, Reetta Hinttala, Lloyd W. Ruddock
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0094835

Crystal Structure of Yeast DNA Polymerase ε Catalytic Domain
Cited by: 39
Author(s): Rinku Jain, Kanagalaghatta R. Rajashankar, Angeliki Buku, Robert E. Johnson, Louise Prakash, Satya Prakash, Aneel K. Aggarwal
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0038318

Crystal, Solution and In silico Structural Studies of Dihydrodipicolinate Synthase from the Common Grapevine
Cited by: 28
Author(s): Sarah C. Atkinson, Con Dogovski, Matthew T. Downton, F. Grant Pearce, Cyril Reboul, Ashley M. Buckle, Juliet A. Gerrard, Renwick C. J. Dobson, John Wagner, Matthew A. Perugini
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0181705

Crystal structure and functional characterization of an isoaspartyl dipeptidase (CpsIadA) from Colwellia psychrerythraea strain 34H
Cited by: 6
Author(s): Sunha Park, Chang Woo Lee, Sung Gu Lee, Seung Chul Shin, Soo Hyun Kim, Hyun Park, Jun Hyuck Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0037371

Interaction of Rio1 Kinase with Toyocamycin Reveals a Conformational Switch That Controls Oligomeric State and Catalytic Activity
Cited by: 29
Author(s): Irene Kiburu, N. LaRonde-LeBlanc
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0193333

Crystal structures of PCNA mutant proteins defective in gene silencing suggest a novel interaction site on the front face of the PCNA ring
Cited by: 14
Author(s): Christine M. Kondratick, Jacob M. Litman, Kurt Shaffer, M. Todd Washington, Lynne M. Dieckman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0064240

Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor
Cited by: 16
Author(s): I. Biela, N. Tidten-Luksch, F. Immekus, Serghei Glinca, Tran Xuan Phong Nguyen, Hans‐Dieter Gerber, A. Heine, G. Klebe, Klaus Reuter
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0023513

Molecular Mechanism of a Green-Shifted, pH-Dependent Red Fluorescent Protein mKate Variant
Cited by: 10
Author(s): Qi Wang, Laura J. Byrnes, Bo Shui, Ute F. Röhrig, Avtar Singh, Dmitriy M. Chudakov, Sergey Lukyanov, Warren R. Zipfel, Michael I. Kotlikoff, Holger Sondermann
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0059069

X-ray Structure and Molecular Dynamics Simulations of Endoglucanase 3 from Trichoderma harzianum: Structural Organization and Substrate Recognition by Endoglucanases That Lack Cellulose Binding Module
Cited by: 29
Author(s): Érica T. Prates, Ivana Stanković, Rodrigo L. Silveira, M.V. Liberato, Flávio Henrique-Silva, Nei Pereira, Igor Polikarpov, Munir S. Skaf
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0150189

DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis
Cited by: 37
Author(s): S.P. Hancock, Stefano Stella, Duilio Cascio, Reid C. Johnson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0036768

Crystal Structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe
Cited by: 15
Author(s): Donghui Wu, Shanwen Jiang, Matthew W. Bowler, Haiwei Song
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0157691

Crystal Structures of the Global Regulator DasR from Streptomyces coelicolor: Implications for the Allosteric Regulation of GntR/HutC Repressors
Cited by: 19
Author(s): S.B. Fillenberg, Mario D. Friess, С. Körner, Rainer A. Böckmann, Yves A. Muller
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0152611

Crystal Structure of Human Myotubularin-Related Protein 1 Provides Insight into the Structural Basis of Substrate Specificity
Cited by: 7
Author(s): Seoung Min Bong, Kkabi Son, Seungwon Yang, Jae-Won Park, Jea-Won Cho, Kyung‐Tae Kim, Hackyoung Kim, Seung Jun Kim, Young Jun Kim, Byung Il Lee
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0103598

Identification of Polyketide Inhibitors Targeting 3-Dehydroquinate Dehydratase in the Shikimate Pathway of Enterococcus faecalis
Cited by: 9
Author(s): Vivian Wing Ngar Cheung, Bin Xue, Maria Hernandez-Valladares, Maybelle Kho Go, Alvin Tung, A.H. Aguda, Robert Robinson, Wen Shan Yew
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0210298

Crystal structure of chloramphenicol-metabolizing enzyme EstDL136 from a metagenome
Cited by: 8
Author(s): Sang-Hoon Kim, Pyoyoon Kang, Keetae Han, Seon-Woo Lee, Sangkee Rhee
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0157070

Structural and Functional Characterization of a Novel Family of Cyclophilins, the AquaCyps
Cited by: 8
Author(s): R.P. Jakob, Philipp A. M. Schmidpeter, Johanna R. Koch, Franz X. Schmid, Timm Maier
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0024621

Structure of Apo- and Monometalated Forms of NDM-1—A Highly Potent Carbapenem-Hydrolyzing Metallo-β-Lactamase
Cited by: 82
Author(s): Young Chang Kim, C. Tesar, J. Mire, R. Jedrzejczak, Andrew Binkowski, G. Babnigg, James C. Sacchettini, A. Joachimiak
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0087134

Chemical Rescue and Inhibition Studies to Determine the Role of Arg301 in Phosphite Dehydrogenase
Cited by: 13
Author(s): John E. Hung, Emily J. Fogle, Neha Garg, Jonathan R. Chekan, Satish K. Nair, Wilfred A. van der Donk
Software Mentions: 1
Published: over 12 years ago

10.3390/cancers13071679

Conformation-Specific Inhibitory Anti-MMP-7 Monoclonal Antibody Sensitizes Pancreatic Ductal Adenocarcinoma Cells to Chemotherapeutic Cell Kill
Cited by: 4
Author(s): Vishnu Mohan, Jean P. Gaffney, Inna Solomonov, Maxim Levin, Mordehay Klepfish, Sophia Akbareian, Barbara Grünwald, Orly Dym, Miriam Eisenstein, Kenneth H. Yu, David P. Kelsen, Achim Krüger, Dylan R. Edwards, Irit Sagi
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12010030

Galectin-8 binds to the Farnesylated C-terminus of K-Ras4B and Modifies Ras/ERK Signaling and Migration in Pancreatic and Lung Carcinoma Cells
Cited by: 15
Author(s): Christopher Meinohl, Sarah J. Barnard, Karin Fritz‐Wolf, Monika Unger, Andreea Porr, Marisa Heipel, Stefanie Wirth, Johannes Madlung, Alfred Nordheim, André Menke, Katja Becker, Klaudia Giehl
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.cell.2017.04.010

Cryo-EM Structure of a Relaxase Reveals the Molecular Basis of DNA Unwinding during Bacterial Conjugation
Cited by: 51
Author(s): Aravindan Ilangovan, Christopher W. M. Kay, Sandro Roier, Hassane El Mkami, Enrico Salvadori, Ellen L. Zechner, Giulia Zanetti, Gabriel Waksman
Software Mentions: 1
Published: over 9 years ago

10.1016/j.cell.2021.05.041

Bacterial Vipp1 and PspA are members of the ancient ESCRT-III membrane-remodeling superfamily
Cited by: 44
Author(s): Jiwei Liu, Matteo Tassinari, Diorge P. Souza, Souvik Naskar, Jeffrey K. Noel, Olga Bohuszewicz, Martin Buck, Tom A. Williams, Buzz Baum, Harry H. Low
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cell.2013.05.046

OTU Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis
Cited by: 445
Author(s): T.E.T. Mevissen, Manuela K. Hospenthal, Paul P. Geurink, P.R. Elliott, Masato Akutsu, N. Arnaudo, Reggy Ekkebus, Yogesh Kulathu, Tobias Wauer, Farid El Oualid, Stefan Freund, Huib Ovaa, David Komander
Software Mentions: 1
Published: over 13 years ago

10.1016/j.cell.2016.10.005

Structure of the MIS12 Complex and Molecular Basis of Its Interaction with CENP-C at Human Kinetochores
Cited by: 120
Author(s): Arsen Petrovic, Jenny Keller, Yahui Liu, Katharina Overlack, Juliane John, Yoana N. Dimitrova, Simon Jenni, Suzan van Gerwen, Patricia Stege, Sabine Wohlgemuth, Pascaline Rombaut, Franz Herzog, Stephen C. Harrison, Ingrid R. Vetter, Andrea Musacchio
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.cell.2018.02.032

Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance
Cited by: 33
Author(s): Anna Rubio-Cosials, Eike C. Schulz, Lotte Lambertsen, Georgy Smyshlyaev, Carlos Rojas‐Cordova, Kristoffer Forslund, Ezgi Karaca, Aleksandra Bebel, Peer Bork, O. Barábas
Software Mentions: 1
Published: over 8 years ago

10.1016/j.cell.2020.09.049

A Therapeutic Non-self-reactive SARS-CoV-2 Antibody Protects from Lung Pathology in a COVID-19 Hamster Model
Cited by: 286
Author(s): Jakob Kreye, S. Momsen Reincke, Hans Christian Kornau, Elisa Sánchez-Sendín, Victor M. Corman, Hejun Liu, Meng Yuan, Nicholas C. Wu, Xueyong Zhu, Chang-Chun David Lee, Jakob Trimpert, Markus Höltje, Kristina Dietert, Laura Stöffler, Niels von Wardenburg, S. Van Hoof, Marie A. Homeyer, Jan Hoffmann, Azza Abdelgawad, Achim D. Gruber, Luca D. Bertzbach, Daria Vladimirova, Lucie Y. Li, Paula Charlotte Barthel, Karl Skriner, Andreas C. Hocke, Stefan Hippenstiel, Martin Witzenrath, Norbert Suttorp, Florian Kurth, Christiana Franke, Matthias Endres, Dietmar Schmitz, Lara M. Jeworowski, Anja Richter, Marie Luisa Schmidt, Tatjana Schwarz, Marcel A. Müller, Christian Drosten, Daniel Wendisch, Leif Erik Sander, Nikolaus Osterrieder, Ian A. Wilson, Harald Prüß
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.cell.2009.11.015

The Structural Basis for mRNA Recognition and Cleavage by the Ribosome-Dependent Endonuclease RelE
Cited by: 199
Author(s): Cajetan Neubauer, Yong‐Gui Gao, Kasper R. Andersen, C.M. Dunham, A.C. Kelley, Jendrik Hentschel, Kenn Gerdes, V. Ramakrishnan, D.E. Brodersen
Software Mentions: 1
Published: almost 17 years ago

10.1016/j.cell.2019.05.025

Human Antibodies that Slow Erythrocyte Invasion Potentiate Malaria-Neutralizing Antibodies
Cited by: 92
Author(s): Daniel G. W. Alanine, Doris Quinkert, Rasika Kumarasingha, Shahid Mehmood, Francesca R. Donnellan, Nana Minkah, Bernadeta Dadonaite, Ababacar Diouf, Francis Galaway, Sarah E. Silk, Abhishek Jamwal, Joyce Marshall, Kazutoyo Miura, Lander Foquet, Sean C. Elias, Geneviève Labbé, Alexander D. Douglas, Jing Jin, Ruth Payne, Joseph J. Illingworth, David J. Pattinson, David Pulido, Barnabas G. Williams, Willem A. de Jongh, Gavin J. Wright, Stefan H. I. Kappe, Carol V. Robinson, Carole A. Long, Brendan S. Crabb, Paul R. Gilson, Matthew K. Higgins, Simon J. Draper
Software Mentions: 1
Published: over 7 years ago

10.1016/j.cell.2011.01.008

Structural Basis of the 9-Fold Symmetry of Centrioles
Cited by: 315
Author(s): Daiju Kitagawa, Ioannis Vakonakis, Natacha Olieric, Manuel Hilbert, Debora Keller, V. Oliéric, Miriam Bortfeld, Michèle C. Erat, Isabelle Flückiger, Pierre Gönczy, Michel O. Steinmetz
Software Mentions: 1
Published: over 15 years ago

10.1016/j.chembiol.2017.05.014

The Structure of the Guanidine-II Riboswitch
Cited by: 53
Author(s): Lin Huang, Jia Wang, David M.J. Lilley
Software Mentions: 1
Published: over 9 years ago

10.1016/j.chembiol.2017.08.021

Structure of the Guanidine III Riboswitch
Cited by: 43
Author(s): Lin Huang, Jia Wang, Timothy J. Wilson, David M.J. Lilley
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.chembiol.2018.11.001

(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition
Cited by: 44
Author(s): J.G.M. Rack, Antonio Ariza, Bryon Drown, Callum Henfrey, Edward Bartlett, Tomohiro Shirai, Paul J. Hergenrother, Ivan Ahel
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41421-018-0009-2

Crystal structure of the human 5-HT1B serotonin receptor bound to an inverse agonist
Cited by: 59
Author(s): Wanchao Yin, Xin Zhou, Dehua Yang, Parker W. de Waal, Meitian Wang, Antao Dai, Xiaoqing Cai, Chia‐Ying Huang, Ping Liu, Xiaoxi Wang, Yuanyuan Yin, Bo Liu, Yu Zhou, Jiang Wang, Hong Liu, Martin Caffrey, Karsten Melcher, Yechun Xu, Mingwei Wang, Hao Xu, Yi Jiang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41421-021-00283-0

Crystal structure of the INTS3/INTS6 complex reveals the functional importance of INTS3 dimerization in DSB repair
Cited by: 9
Author(s): Jia Yu, Zhongtao Cheng, S.R. Bharath, Qingguo Sun, Nannan Su, Jun Huang, Haiwei Song
Software Mentions: 1
Published: about 5 years ago

10.1038/s41421-018-0044-z

Structural visualization of RNA polymerase III transcription machineries
Cited by: 55
Author(s): Yanping Han, Yan Cheng, Susan Fishbain, Ivaylo Ivanov, Yuan He
Software Mentions: 1
Published: about 8 years ago

10.1038/s41421-021-00284-z

Molecular insights into the human ABCB6 transporter
Cited by: 14
Author(s): Guangyuan Song, Sensen Zhang, Mengqi Tian, Laixing Zhang, Runyu Guo, Wei Zhuo, Maojun Yang
Software Mentions: 1
Published: about 5 years ago

10.1016/j.chom.2020.06.003

Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor
Cited by: 15
Author(s): Nicholas C. Wu, Sarah F. Andrews, Julie E. Raab, Sarah O’Connell, Chaim A. Schramm, Xintao Ding, Michael Chambers, Kwanyee Leung, Lingshu Wang, Yi Zhang, John R. Mascola, Daniel C. Douek, Julie E. Ledgerwood, Adrian B. McDermott, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1016/j.chom.2021.04.005

A combination of cross-neutralizing antibodies synergizes to prevent SARS-CoV-2 and SARS-CoV pseudovirus infection
Cited by: 44
Author(s): Hejun Liu, Meng Yuan, Deli Huang, Sandhya Bangaru, Fangzhu Zhao, Chang-Chun David Lee, Linghang Peng, Shawn Barman, Xueyong Zhu, David Nemazee, Dennis R. Burton, Marit J. van Gils, Rogier W. Sanders, Hans Christian Kornau, S. Momsen Reincke, Harald Prüß, Jakob Kreye, Nicholas C. Wu, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1038/s41423-018-0012-4

A critical epitope in CD147 facilitates memory CD4+ T-cell hyper-activation in rheumatoid arthritis
Cited by: 22
Author(s): Na Guo, Sheng Ye, Kui Zhang, Yu Xl, Hong‐Yong Cui, Xiang-Min Yang, Lin Peng, Miaomiao Lv, Jinlin Miao, Yang Zhang, Qing Han, Rongguang Zhang, Zhi‐Nan Chen, Ping Zhu
Software Mentions: 1
Published: over 8 years ago

10.1016/j.celrep.2021.109109

Diverse immunoglobulin gene usage and convergent epitope targeting in neutralizing antibody responses to SARS-CoV-2
Cited by: 21
Author(s): Xiaojuan Zhou, Fengge Ma, Jun Xie, Meng Yuan, Yunqiao Li, Namir Shaabani, Fangzhu Zhao, Deli Huang, Nicholas C. Wu, Chang-Chun David Lee, Hejun Liu, Jiali Li, Zhonghui Chen, Yazhen Hong, Wen Hsien Liu, Nengming Xiao, Dennis R. Burton, Haijian Tu, Hang Li, Xin Chen, John R. Teijaro, Ian A. Wilson, Changchun Xiao, Zhenguo Huang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2014.06.001

FAN1 Activity on Asymmetric Repair Intermediates Is Mediated by an Atypical Monomeric Virus-type Replication-Repair Nuclease Domain
Cited by: 22
Author(s): Simon Pennell, Anne-Cécile Déclais, Jiejin Li, L.F. Haire, W.M.A. van den Berg, José W. Saldanha, Ian A. Taylor, John Rouse, David M.J. Lilley, Stephen J. Smerdon
Software Mentions: 1
Published: over 12 years ago

10.1016/j.celrep.2015.11.042

Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA
Cited by: 37
Author(s): Yijin Liu, Alasdair D.J. Freeman, Anne-Cécile Déclais, Timothy J. Wilson, Anton Gartner, David M. J. Lilley
Software Mentions: 1
Published: almost 11 years ago

10.1038/cr.2017.148

Structural basis for specific flagellin recognition by the NLR protein NAIP5
Cited by: 52
Author(s): Xuanming Yang, Fan Yang, Weiguang Wang, Ge Lin, Zhongzhi Hu, Zhifu Han, Yijun Qi, Liman Zhang, Jiawei Wang, Sen-Fang Sui, Jijie Chai
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41422-019-0237-5

Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA
Cited by: 62
Author(s): Min Zhang, Sen Yang, Raman Nelakanti, Wentao Zhao, Gaochao Liu, Zheng Li, Xiaohui Liu, Tao Wu, Andrew Xiao, Haitao Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41422-018-0091-x

Small molecule inhibitors reveal allosteric regulation of USP14 via steric blockade
Cited by: 79
Author(s): Yiwei Wang, Yuxuan Jiang, Shan Ding, Jiawang Li, Nguyễn Hải Sông, Yujing Ren, Danning Hong, Wu Cai, Bin Li, Feng Wang, Wei He, Jiawei Wang, Ziqing Mei
Software Mentions: 1
Published: about 8 years ago

10.1038/s41422-018-0131-6

Structural insights into a high fidelity variant of SpCas9
Cited by: 36
Author(s): Muchun Guo, Kewei Ren, Yuwei Zhu, Zhonglin Tang, Yuhang Wang, Bailing Zhang, Zhiwei Huang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41422-020-00404-6

Structural mechanism of phospholipids translocation by MlaFEDB complex
Cited by: 46
Author(s): Ximin Chi, Qiongxuan Fan, Yuanyuan Zhang, Ke Liang, Li Wan, Qiang Zhou, Yanyan Li
Software Mentions: 1
Published: about 6 years ago

10.1038/s41422-020-0305-x

Inhibition of SARS-CoV-2 (previously 2019-nCoV) infection by a highly potent pan-coronavirus fusion inhibitor targeting its spike protein that harbors a high capacity to mediate membrane fusion
Cited by: 1,035
Author(s): Shuai Xia, Meiqin Liu, Chao Wang, Wei Xu, Qiaoshuai Lan, Siliang Feng, Feifei Qi, Linlin Bao, Lanying Du, Shuwen Liu, Chuan Qin, Fei Sun, Shi Z, Yun Zhu, Shibo Jiang, Lu Lu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41422-020-0280-2

Cryo-EM structures of PAC1 receptor reveal ligand binding mechanism
Cited by: 31
Author(s): Jia Wang, Xianqiang Song, Dandan Zhang, Xiaoqing Chen, Xun Li, Yaping Sun, Li Cui, Yunzhi Song, Yao Ding, Ruobing Ren, Essa Hu Harrington, Liaoyuan A. Hu, Wenge Zhong, Cen Xu, Xin Huang, Hongwei Wang, Yingli Ma
Software Mentions: 1
Published: over 6 years ago

10.1038/cr.2017.83

Dimeric structure of the uracil:proton symporter UraA provides mechanistic insights into the SLC4/23/26 transporters
Cited by: 82
Author(s): Xuelian Yu, Guanghui Yang, Chuangye Yan, Javier L. Baylon, Jing Jiang, Fuchu He, Gongxun Lu, Kazuya Hasegawa, Hideo Okumura, Tingliang Wang, Emad Tajkhorshid, Shuo Li, Nieng Yan
Software Mentions: 1
Published: over 9 years ago

10.1016/j.tcsw.2018.06.002

The role of the jaw subdomain of peptidoglycan glycosyltransferases for lipid II polymerization
Cited by: 6
Author(s): Avinash S. Punekar, Firdaus Samsudin, Adrian J. Lloyd, Christopher G. Dowson, David J. Scott, Syma Khalid, David I. Roper
Software Mentions: 1
Published: over 8 years ago

10.1080/19336950.2018.1457898

X-ray crystallography of TRP channels
Cited by: 5
Author(s): Appu Kumar Singh, L.L. McGoldrick, Kei Saotome, Alexander I. Sobolevsky
Software Mentions: 1
Published: almost 9 years ago

10.1002/cmdc.201500014

Selective Targeting of the TPX2 Site of Importin-α Using Fragment-Based Ligand Design
Cited by: 11
Author(s): Rhian S. Holvey, Eugene Valkov, David Neal, Murray Stewart, Chris Abell
Software Mentions: 1
Published: over 11 years ago

10.1016/j.chembiol.2015.10.015

Unraveling the B. pseudomallei Heptokinase WcbL: From Structure to Drug Discovery
Cited by: 7
Author(s): Mirella Vivoli, Michail N. Isupov, Rebecca Nicholas, Andrew M. Hill, Andrew E. Scott, Paul Kosma, Joann L. Prior, Nicholas J. Harmer
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.chembiol.2014.03.009

Synthetic Inositol Phosphate Analogs Reveal that PPIP5K2 Has a Surface-Mounted Substrate Capture Site that Is a Target for Drug Discovery
Cited by: 45
Author(s): Huanchen Wang, H. Yasmin Godage, Andrew M. Riley, Jeremy D. Weaver, Stephen B. Shears, Barry V. L. Potter
Software Mentions: 1
Published: over 12 years ago

10.1186/s13065-017-0296-y

Ultra-high resolution X-ray structures of two forms of human recombinant insulin at 100 K
Cited by: 8
Author(s): David R. Lisgarten, Rex A. Palmer, C.M.C. Lobley, C.E. Naylor, Babur Z. Chowdhry, Zakieh I. Al-Kurdi, Adnan A. Badwan, Brendan J. Howlin, Nicholas C. J. Gibbons, José W. Saldanha, J. N. Lisgarten, A.K. Basak
Software Mentions: 1
Published: about 9 years ago

10.1039/d0sc01935f

Enhancing a <i>de novo</i> enzyme activity by computationally-focused ultra-low-throughput screening
Cited by: 22
Author(s): Valeria A. Risso, Adrian Romero‐Rivera, Luis I. Gutierrez-Rus, Mariano Ortega‐Muñoz, Francisco Santoyo‐González, José A. Gavira, José M. Sanchez-Ruiz, Shina Caroline Lynn Kamerlin
Software Mentions: 1
Published: almost 7 years ago

10.1039/c8sc03759k

Structural insights reveal a recognition feature for tailoring hydrocarbon stapled-peptides against the eukaryotic translation initiation factor 4E protein
Cited by: 18
Author(s): Dilraj Lama, Anne‐Marie Liberatore, Yuri Frosi, Jessica Nakhlé, Natia Tsomaia, Tarig Bashir, David P. Lane, Christopher J. Brown, Chandra Verma, Serge Auvin
Software Mentions: 1
Published: almost 8 years ago

10.1039/c6sc01019a

Elucidation of the heme active site electronic structure affecting the unprecedented nitrite dismutase activity of the ferriheme b proteins, the nitrophorins
Cited by: 9
Author(s): Chunmao He, Hideaki Ogata, Wolfgang Lubitz
Software Mentions: 1
Published: almost 11 years ago

10.1039/c5sc03397g

A structural view of synthetic cofactor integration into [FeFe]-hydrogenases
Cited by: 115
Author(s): Julian Esselborn, Norifumi Muraki, Kathrin Klein, Vera Engelbrecht, Nils Metzler‐Nolte, Ulf‐Peter Apfel, Eckhard Hofmann, Genji Kurisu, Thomas Happe
Software Mentions: 1
Published: almost 11 years ago

10.1039/c6sc05504d

Quantum crystallography
Cited by: 106
Author(s): Simon Grabowsky, Alessandro Genoni, Hans‐Beat Bürgi
Software Mentions: 1
Published: almost 10 years ago

10.1039/c8sc01074a

A functional interplay between intein and extein sequences in protein splicing compensates for the essential block B histidine
Cited by: 24
Author(s): Kristina Friedel, Monika A. Popp, Julian C. J. Matern, E.M. Gazdag, Ilka V. Thiel, Gerrit Volkmann, Wulf Blankenfeldt, Henning D. Mootz
Software Mentions: 1
Published: almost 8 years ago

10.1039/c8sc04564j

Predicting protein–ligand binding affinity and correcting crystal structures with quantum mechanical calculations: lactate dehydrogenase A
Cited by: 10
Author(s): Iva Lukac, Hend E. Abdelhakim, Richard A. Ward, Stephen A. St-Gallay, Judith C. Madden, Andrew G. Leach
Software Mentions: 1
Published: almost 8 years ago

10.1002/cbic.201402597

Hen Egg‐White Lysozyme Crystallisation: Protein Stacking and Structure Stability Enhanced by a Tellurium(VI)‐Centred Polyoxotungstate
Cited by: 67
Author(s): Aleksandar Bijelic, Christian Molitor, S.G. Mauracher, Rami Al‐Oweini, Ulrich Kortz, Annette Rompel
Software Mentions: 1
Published: almost 12 years ago

Projects: cran: PHENIX

Science Score: 75/100

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Papers Mentioning PHENIX 2,287