cran: PHENIX | Projects | Ecosyste.ms: Papers

10.1371/journal.pbio.3000204

A non-natural nucleotide uses a specific pocket to selectively inhibit telomerase activity
Cited by: 14
Author(s): Wilnelly Hernandez-Sanchez, Wei Huang, Brian Plucinsky, Nelson Garcia-Vazquez, Nathaniel Robinson, William P. Schiemann, Anthony J. Berdis, Emmanuel Skordalakes, Derek Taylor
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1001261

Superhelical Architecture of the Myosin Filament-Linking Protein Myomesin with Unusual Elastic Properties
Cited by: 36
Author(s): Nikos Pinotsis, Spyros D. Chatziefthimiou, Felix Berkemeier, Fabienne Beuron, Irene M. Mavridis, Petr V. Konarev, Dmitri I. Svergun, Edward P. Morris, Matthias Rief, Matthias Wilmanns
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pbio.3000038

Structure of the Macrobrachium rosenbergii nodavirus: A new genus within the Nodaviridae?
Cited by: 33
Author(s): Ken Ho, Mads Gabrielsen, Poay Ling Beh, Chare Li Kueh, Qiu Xian Thong, James Streetley, Wen Siang Tan, David Bhella
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.1001101

Ligand Activation of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC
Cited by: 100
Author(s): Iwan Zimmermann, Raimund Dutzler
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.3001231

The structure of MgtE in the absence of magnesium provides new insights into channel gating
Cited by: 5
Author(s): Fengxiang Jin, Minxuan Sun, Takashi Fujii, Yasuhiro Yamada, Jin Wang, Andrés D. Maturana, Miki Wada, Shichen Su, Jinbiao Ma, H. Takeda, Tsukasa Kusakizako, Atsuhiro Tomita, Yoshiko Nakada-Nakura, Kehong Liu, T. Uemura, Yoshihiro Nomura, Koichi Ito, Osamu Nureki, Keiichi Namba, So Iwata, Ye Yu, Motoyuki Hattori
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.1001511

Structural Basis of Rap Phosphatase Inhibition by Phr Peptides
Cited by: 50
Author(s): Francisca Gallego del Sol, Alberto Marina
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pbio.1002393

Signal Transduction at the Domain Interface of Prokaryotic Pentameric Ligand-Gated Ion Channels
Cited by: 39
Author(s): Carlo Bertozzi, Iwan Zimmermann, Sibylle Engeler, R.J.C. Hilf, Raimund Dutzler
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.3000139

Potent anti-influenza H7 human monoclonal antibody induces separation of hemagglutinin receptor-binding head domains
Cited by: 32
Author(s): Hannah L. Turner, Jesper Pallesen, Shanshan Lang, Sandhya Bangaru, Sarah Urata, Sheng Li, Christopher A. Cottrell, Charles A. Bowman, James E. Crowe, Ian A. Wilson, Andrew B. Ward
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.1001034

A Structural and Mutagenic Blueprint for Molecular Recognition of Strychnine and d-Tubocurarine by Different Cys-Loop Receptors
Cited by: 88
Author(s): Marijke Brams, Anshul A. Pandya, Dmitry Kuzmin, René van Elk, L. Krijnen, Jerrel L. Yakel, Victor I. Tsetlin, August B. Smit, Chris Ulens
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.3000315

Atomic view into Plasmodium actin polymerization, ATP hydrolysis, and fragmentation
Cited by: 19
Author(s): Esa-Pekka Kumpula, A.J. Lopez, Leila Tajedin, Huijong Han, Inari Kursula
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000096

Molecular understanding of calcium permeation through the open Orai channel
Cited by: 47
Author(s): Xiaofen Liu, Gao Wu, Yi Yu, Xiaozhe Chen, Renci Ji, Jing Lü, Xin Li, Xing Zhang, Xue Yang, Yuequan Shen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3001370

Structures of the mycobacterial membrane protein MmpL3 reveal its mechanism of lipid transport
Cited by: 19
Author(s): Chih‐Chia Su, Philip A. Klenotic, Meng Cui, Meinan Lyu, Christopher E. Morgan, Edward Yu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.1001429

Inhibition of the Prokaryotic Pentameric Ligand-Gated Ion Channel ELIC by Divalent Cations
Cited by: 42
Author(s): Iwan Zimmermann, Alessandro Marabelli, Carlo Bertozzi, Lucia G. Sivilotti, Raimund Dutzler
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pbio.1000554

Domain Swapping in Allosteric Modulation of DNA Specificity
Cited by: 20
Author(s): Chad K. Park, Hemant Joshi, Alka Agrawal, M. Imran Ghare, E.J. Little, Pete Dunten, Jurate Bitinaite, Nancy C. Horton
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pbio.3000367

Structural basis for recognition of the tumor suppressor protein PTPN14 by the oncoprotein E7 of human papillomavirus
Cited by: 40
Author(s): Hye-Yeoung Yun, Min Wook Kim, Hye Seon Lee, Wantae Kim, Ji Hye Shin, Hyunmin Kim, Hang‐Sik Shin, Hwangseo Park, Byung‐Ha Oh, Won Kon Kim, Kwang‐Hee Bae, Sang Chul Lee, Eun Woo Lee, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1000911

Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles
Cited by: 33
Author(s): Jonathan E. Kohn, Pavel V. Afonine, Jory Z. Ruscio, Paul D. Adams, Teresa Head‐Gordon
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pcbi.1004507

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit
Cited by: 78
Author(s): D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pgen.1008750

ArdC, a ssDNA-binding protein with a metalloprotease domain, overpasses the recipient hsdRMS restriction system broadening conjugation host range
Cited by: 16
Author(s): Lorena González-Montes, Irene del Campo, M. Pilar Garcillán-Barcia, Fernando de la Cruz, Gabriel Moncalián
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1003102

Selective Pressure Causes an RNA Virus to Trade Reproductive Fitness for Increased Structural and Thermal Stability of a Viral Enzyme
Cited by: 50
Author(s): Moshe Dessau, Daniel H. Goldhill, Robert McBride, Paul Turner, Yorgo Modis
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pgen.1003239

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice
Cited by: 67
Author(s): Qing-Feng Chen, Xiang-Song Chen, Quan Wang, Faben Zhang, Zhiyong Lou, Qifa Zhang, Dao‐Xiu Zhou
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pgen.1004544

Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome
Cited by: 97
Author(s): Jutta Vogelmann, Antoine Le Gall, Stephanie Déjardin, Frédéric Allemand, Adrien Gamot, Gilles Labesse, Olivier Cuvier, Nicolas Nègre, Martin Cohen‐Gonsaud, Emmanuel Margeat, Marcelo Nöllmann
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0006301

Evaluation of the Trypanosoma brucei 6-oxopurine salvage pathway as a potential target for drug discovery
Cited by: 27
Author(s): Eva Doleželová, D. Teran, Ondřej Gahura, Zuzana Kotrbová, Michaela Procházková, Dianne T. Keough, Petr Špaček, Dana Hocková, Luke W. Guddat, Alena Zı́ková
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0007894

Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase
Cited by: 43
Author(s): Hideaki Shimizu, Akatsuki Saito, Junko Mikuni, Emi E. Nakayama, Hiroo Koyama, Teruki Honma, Mikako Shirouzu, S. Sekine, Tatsuo Shioda
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0007815

Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites
Cited by: 6
Author(s): Pedro Jiménez‐Sandoval, Eduardo Castro‐Torres, Rogelio González‐González, Corina Díaz‐Quezada, Misraim Gurrola, Laura D. Camacho-Manriquez, Lucia Leyva-Navarro, Luis G. Brieba
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pntd.0003644

Structural Analysis of the Synthetic Duffy Binding Protein (DBP) Antigen DEKnull Relevant for Plasmodium vivax Malaria Vaccine Design
Cited by: 37
Author(s): Edwin Chen, Nichole D. Salinas, Francis B. Ntumngia, John Adams, Niraj H. Tolia
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0005932

Structural basis for the high specificity of a Trypanosoma congolense immunoassay targeting glycosomal aldolase
Cited by: 13
Author(s): Joar Pinto, Steven Odongo, Felicity Lee, Vaiva Gaspariunaite, Serge Muyldermans, Stefan Magez, Yann G.J. Sterckx
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pntd.0005084

Protein Translation Enzyme lysyl-tRNA Synthetase Presents a New Target for Drug Development against Causative Agents of Loiasis and Schistosomiasis
Cited by: 25
Author(s): Arvind Sharma, Manmohan Sharma, Manickam Yogavel, Amit Sharma
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0076983

Structural and Functional Analyses of DNA-Sensing and Immune Activation by Human cGAS
Cited by: 51
Author(s): Kazuki Kato, Ryohei Ishii, Eiji Gotō, Ryuichiro Ishitani, Fuminori Tokunaga, Osamu Nureki
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0026845

Crystal Structure of Outer Membrane Protein NMB0315 from Neisseria meningitidis
Cited by: 18
Author(s): Xiangyu Wang, Xue Yang, Chi Yang, Zhenhua Wu, Hui Xu, Yuequan Shen
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0164279

Functional and Structural Characterization of Purine Nucleoside Phosphorylase from Kluyveromyces lactis and Its Potential Applications in Reducing Purine Content in Food
Cited by: 18
Author(s): Durga Mahor, Anu Priyanka, Gandham S. Prasad, Krishan Gopal Thakur
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0093156

Crystal Structure of ORF210 from E. coli O157:H1 Phage CBA120 (TSP1), a Putative Tailspike Protein
Cited by: 16
Author(s): Chen Chen, Patrick Bales, Julia Greenfield, Ryan D. Heselpoth, Daniel Nelson, Osnat Herzberg
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0134576

Structural and Functional Studies of Influenza Virus A/H6 Hemagglutinin
Cited by: 24
Author(s): Fengyun Ni, Elena Kondrashkina, Qinghua Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0017946

A Transient Homotypic Interaction Model for the Influenza A Virus NS1 Protein Effector Domain
Cited by: 43
Author(s): Philip S. Kerry, Juan Ayllón, Margaret Taylor, C. Hass, Alan P. Lewis, Adolfo Garcı́a-Sastre, R. E. Randall, Benjamin G. Hale, Rosemary Russell
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0019589

Crystal Structures of Two Aminoglycoside Kinases Bound with a Eukaryotic Protein Kinase Inhibitor
Cited by: 23
Author(s): D.H. Fong, Bing Xiong, Ji-Young Hwang, Albert M. Berghuis
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0168019

Structural Analysis of Thymidylate Synthase from Kaposi’s Sarcoma-Associated Herpesvirus with the Anticancer Drug Raltitrexed
Cited by: 18
Author(s): Yong Mi Choi, Hyun Ku Yeo, Young Woo Park, Jae Young Lee
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0115995

Crystal Structure of Human Importin-α1 (Rch1), Revealing a Potential Autoinhibition Mode Involving Homodimerization
Cited by: 20
Author(s): Hideyuki Miyatake, Akira Sanjoh, Satoru Unzai, Go Matsuda, Yasutoshi Tatsumi, Yoichi Miyamoto, Naoshi Dohmae, Yoko Aida
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0010482

Crystal Structure of the Neutralizing Llama VHH D7 and Its Mode of HIV-1 gp120 Interaction
Cited by: 32
Author(s): Andreas Hinz, D. Lutje Hulsik, Anna Forsman, Willie W. L. Koh, Hassan Belrhali, Andrea Gorlani, Hans de Haard, Robin A. Weiss, Theo Verrips, Winfríed Weissenhorn
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0010013

The Crystal Structure of PPIL1 Bound to Cyclosporine A Suggests a Binding Mode for a Linear Epitope of the SKIP Protein
Cited by: 23
Author(s): C. Stegmann, Reinhard Lührmann, Markus C. Wahl
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0133370

Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids
Cited by: 30
Author(s): Carlos A. H. Fernandes, Filomena Cardoso, Walter Luís Garrido Cavalcante, Andreimar M. Soares, Maeli Dal-Pai-Silva, Márcia Gallacci, Marcos R.M. Fontes
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0042775

Structural Insights into the Assembly of CARMA1 and BCL10
Cited by: 34
Author(s): Siwei Li, Xue Yang, Jiushu Shao, Yuequan Shen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0188620

Tetrahydrocarbazoles are a novel class of potent P-type ATPase inhibitors with antifungal activity
Cited by: 19
Author(s): Maike Bublitz, Lasse Kjellerup, Karen O'Hanlon Cohrt, Sandra Gordon, Anne Louise Mortensen, Johannes Clausen, T. David Pallin, John Bondo Hansen, Anja Thoe Fuglsang, William Dalby‐Brown, Anne-Marie Lund Winther
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0217292

Structural analysis of Cytochrome P450 BM3 mutant M11 in complex with dithiothreitol
Cited by: 4
Author(s): Karla Frydenvang, Marlies C. A. Verkade‐Vreeker, Floor Dohmen, Jan N. M. Commandeur, Maria Rafiq, Osman Mirza, Flemming Steen Jørgensen, Daan P. Geerke
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0034354

Rational Design and Characterization of D-Phe-Pro-D-Arg-Derived Direct Thrombin Inhibitors
Cited by: 22
Author(s): Ana C. Figueiredo, Cristina C. Clement, Sheuli Zakia, Julian A. Gingold, Manfred Philipp, Pedro José Barbosa Pereira
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0071963

The Role of Protein Denaturation Energetics and Molecular Chaperones in the Aggregation and Mistargeting of Mutants Causing Primary Hyperoxaluria Type I
Cited by: 46
Author(s): Noel Mesa‐Torres, Israel Fabelo-Rosa, Débora Riverol, Cristina Yunta, Armando Albert, Eduardo Salido, Ángel L. Pey
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0055697

A Study on the Interaction of Rhodamine B with Methylthioadenosine Phosphorylase Protein Sourced from an Antarctic Soil Metagenomic Library
Cited by: 24
Author(s): Paulina Bartasun, Hubert Cieśliński, A. Bujacz, Anna Wierzbicka-Woś, Józef Kur
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0197635

Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1
Cited by: 9
Author(s): Hye-Yeoung Yun, Jinhyuk Lee, Hyunmin Kim, Hyojung Ryu, Hang‐Sik Shin, Byung‐Ha Oh, Bonsu Ku, Seung Jun Kim
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0131218

Serendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases
Cited by: 14
Author(s): M.S. Gadd, Emil Bulatov, A. Ciulli
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0061303

Two Crystal Structures of Bombyx mori Lipoprotein 3 - Structural Characterization of a New 30-kDa Lipoprotein Family Member
Cited by: 6
Author(s): A.J. Pietrzyk, A. Bujacz, Jochen Mueller‐Dieckmann, Małgorzata Łochyńska, Mariusz Jaskólski, G. Bujacz
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0027599

The PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers
Cited by: 39
Author(s): Nada Lallous, Pierre Legrand, A.G. McEwen, Santiago Ramón‐Maiques, Jean‐Pierre Samama, Catherine Birck
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0014165

Crystal Structure of the 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase•Dihydropteroate Synthase Bifunctional Enzyme from Francisella tularensis
Cited by: 25
Author(s): Charles W. Pemble, Perdeep K. Mehta, Smriti Mehra, Zhenmei Li, Amanda Nourse, Richard Lee, Stephen W. White
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0144174

Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells
Cited by: 17
Author(s): Karen M. Plevock, Brian J. Galletta, Kevin C. Slep, Nasser M. Rusan
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0187544

Structure and function of a CE4 deacetylase isolated from a marine environment
Cited by: 32
Author(s): Tina R. Tuveng, U. Rothweiler, D.B.R.K. Gupta Udatha, Gustav Vaaje‐Kolstad, Arne O. Smalås, Vincent G. H. Eijsink
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0026743

Determination of the Crystal Structure and Active Residues of FabV, the Enoyl-ACP Reductase from Xanthomonas oryzae
Cited by: 17
Author(s): Li He, Xiaoli Zhang, Lijun Bi, Jin He, Tao Jiang
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0151285

Biochemistry and Crystal Structure of Ectoine Synthase: A Metal-Containing Member of the Cupin Superfamily
Cited by: 24
Author(s): Nils Widderich, S. Kobus, Astrid Höppner, Ramona Riclea, Andreas Seubert, Jeroen S. Dickschat, Johann Heider, Sander H. J. Smits, Erhard Bremer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0141543

Structural Characterisation of FabG from Yersinia pestis, a Key Component of Bacterial Fatty Acid Synthesis
Cited by: 13
Author(s): J.D. Nanson, Jade K. Forwood
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0096763

Structure and Inhibition of Mouse Leukotriene C4 Synthase
Cited by: 9
Author(s): Damian Niegowski, Thea K. Kleinschmidt, Shabbir Ahmad, Abdul Aziz Qureshi, Michaela Mårback, Agnes Rinaldo-Matthis, Jesper Z. Haeggström
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0160890

Structural Basis of Microtubule Destabilization by Potent Auristatin Anti-Mitotics
Cited by: 113
Author(s): Andrew B. Waight, Katja Bargsten, Svetlana O. Doronina, Michel O. Steinmetz, Django Sussman, A.E. Prota
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0070014

Development and Biotechnological Application of a Novel Endoxylanase Family GH10 Identified from Sugarcane Soil Metagenome
Cited by: 28
Author(s): Thabata M. Alvarez, Rosana Goldbeck, C.R. Santos, Douglas Antônio Alvaredo Paixão, Thiago Augusto Gonçalves, João Paulo L. Franco Cairo, Rodrigo Ferreira de Almeida, Isabela de Oliveira Pereira, G. J. Jackson, Júnio Cota, Fernanda Büchli, Ana Paula Citadini, Roberto Ruller, Carla Cristina Polo, Mário de Oliveira Neto, Mário Tyago Murakami, Fábio M. Squina
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0051128

Crystal Structure of Two Anti-Porphyrin Antibodies with Peroxidase Activity
Cited by: 10
Author(s): Victor Muñoz Robles, Jean‐Didier Maréchal, Amel Bahloul, Marie-Agnès Sari, Jean‐Pierre Mahy, Béatrice Golinelli‐Pimpaneau
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0195723

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA
Cited by: 10
Author(s): Wenling An, Yifei Du, Keqiong Ye
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0069125

Structural and Functional Characterisation of TesA - A Novel Lysophospholipase A from Pseudomonas aeruginosa
Cited by: 47
Author(s): Filip Kovačić, Joachim Granzin, Susanne Wilhelm, Biserka Kojić‐Prodić, Renu Batra‐Safferling, Karl‐Erich Jaeger
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0123934

Structural Analysis of the 14-3-3ζ/Chibby Interaction Involved in Wnt/β-Catenin Signaling
Cited by: 23
Author(s): Ryan C. Killoran, Jing‐Song Fan, Daiwen Yang, Brian H. Shilton, Wing‐Yiu Choy
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0165139

The Human Mixed Lineage Leukemia 5 (MLL5), a Sequentially and Structurally Divergent SET Domain-Containing Protein with No Intrinsic Catalytic Activity
Cited by: 30
Author(s): S. Mas-y-mas, Marta Barbon, Catherine Teyssier, Hélène Déméné, João E. Carvalho, Louise E. Bird, А. А. Лебедев, Juliana Fattori, Michael Schubert, Christian Dumas, William Bourguet, Albane le Maire
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0066224

An Appended Domain Results in an Unusual Architecture for Malaria Parasite Tryptophanyl-tRNA Synthetase
Cited by: 25
Author(s): Sameena Khan, Ankur Garg, Arvind Sharma, Noelia Camacho, Daria Picchioni, Adélaïde Saint-Léger, Lluı́s Ribas de Pouplana, Manickam Yogavel, Amit Sharma
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0016788

Crystal Structure of a Charge Engineered Human Lysozyme Having Enhanced Bactericidal Activity
Cited by: 27
Author(s): Avinash Gill, Thomas C. Scanlon, Daniel C. Osipovitch, Dean R. Madden, Karl E. Griswold
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0048591

A Divalent Ion Is Crucial in the Structure and Dominant-Negative Function of ID Proteins, a Class of Helix-Loop-Helix Transcription Regulators
Cited by: 19
Author(s): Marie Vivian Wong, Sizun Jiang, Paaventhan Palasingam, Prasanna R. Kolatkar
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0183272

Mpp10 represents a platform for the interaction of multiple factors within the 90S pre-ribosome
Cited by: 15
Author(s): Bebiana Sá-Moura, Markus Kornprobst, Satyavati Kharde, Yasar Luqman Ahmed, Günter Stier, Ruth Kunze, Irmgard Sinning, Ed Hurt
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0083110

Structures of Wnt-Antagonist ZNRF3 and Its Complex with R-Spondin 1 and Implications for Signaling
Cited by: 57
Author(s): Weng Chuan Peng, Wim de Lau, P.K. Madoori, Federico Forneris, J.C.M. Granneman, Hans Clevers, Piet Gros
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0213423

High-resolution cryo-EM structures of the E. coli hemolysin ClyA oligomers
Cited by: 33
Author(s): Wei Peng, Marcela de Souza Santos, Yang Li, Diana R. Tomchick, Kim Orth
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0095808

An Engineered Palette of Metal Ion Quenchable Fluorescent Proteins
Cited by: 21
Author(s): Xiaozhen Yu, Marie‐Paule Strub, Travis J. Barnard, Nicholas Noinaj, Grzegorz Piszczek, Susan K. Buchanan, Justin W. Taraska
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0163366

The Panitumumab EGFR Complex Reveals a Binding Mechanism That Overcomes Cetuximab Induced Resistance
Cited by: 51
Author(s): E. Allen Sickmier, Robert J. Kurzeja, Klaus Michelsen, Mukta Vazir, Evelyn Yang, Andrew S. Tasker
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0008044

Structural Diversity of the Active N-Terminal Kinase Domain of p90 Ribosomal S6 Kinase 2
Cited by: 23
Author(s): Margarita Malakhova, Igor Kurinov, Kangdong Liu, Duo Zheng, I. D’Angelo, Jung‐Hyun Shim, Valerie Steinman, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0063095

Structural Basis of the Induced-Fit Mechanism of 1,4-Dihydroxy-2-Naphthoyl Coenzyme A Synthase from the Crotonase Fold Superfamily
Cited by: 5
Author(s): Yueru Sun, Hualin Song, Jie Li, Yan Li, Ming Jiang, Jiahai Zhou, Zhihong Guo
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0052463

Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency through Rational Design
Cited by: 18
Author(s): Matthew M. Moore, Samuel K. Oteng-Pabi, Antonia T. Pandelieva, Stephen L. Mayo, Roberto A. Chica
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0095246

Identification and Characterization of ABA Receptors in Oryza sativa
Cited by: 87
Author(s): Yuan He, Qian Hao, Wenqi Li, Chuangye Yan, Nieng Yan, Ping Yin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0052934

Integron Gene Cassettes: A Repository of Novel Protein Folds with Distinct Interaction Sites
Cited by: 11
Author(s): V. Sureshan, C.N. Deshpande, Yan Boucher, Jeremy E. Koenig, H. W. Stokes, S.J. Harrop, Paul M. G. Curmi, Bridget C. Mabbutt
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0144673

Role of Intrinsic and Extrinsic Factors in the Regulation of the Mitotic Checkpoint Kinase Bub1
Cited by: 17
Author(s): Claudia Breit, Tanja Bange, Arsen Petrovic, John R. Weir, Franziska Müller, Doro Vogt, Andrea Musacchio
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0115634

Crystal Structure of Helicobacter pylori Pseudaminic Acid Biosynthesis N-Acetyltransferase PseH: Implications for Substrate Specificity and Catalysis
Cited by: 15
Author(s): Abu Iftiaf Md Salah Ud-Din, Yu C. Liu, Anna Roujeinikova
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0153529

Tetrabromobisphenol A Is an Efficient Stabilizer of the Transthyretin Tetramer
Cited by: 18
Author(s): Irina Iakovleva, Afshan Begum, Kristoffer Brännström, Alexandra Wijsekera, Lina Nilsson, Jin Zhang, Patrik L. Andersson, A. Elisabeth Sauer‐Eriksson, Anders Olofsson
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0007165

Crystal Structure of the N-Acetylmannosamine Kinase Domain of GNE
Cited by: 27
Author(s): Yufeng Tong, W. Tempel, L. Nedyalkova, F. Mackenzie, Hee-Won Park
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0038728

Structure Analysis of Entamoeba histolytica DNMT2 (EhMeth)
Cited by: 17
Author(s): Eike C. Schulz, Heide M. Roth, Serge Ankri, Ralf Ficner
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0073123

Directed Evolution of Mycobacterium tuberculosis β-Lactamase Reveals Gatekeeper Residue That Regulates Antibiotic Resistance and Catalytic Efficiency
Cited by: 17
Author(s): C. Feiler, Adam C. Fisher, Jason T. Boock, Matthew Marrichi, Lori Wright, Philipp A. M. Schmidpeter, Wulf Blankenfeldt, Martin S. Pavelka, Matthew P. DeLisa
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0091813

Catalase (KatA) Plays a Role in Protection against Anaerobic Nitric Oxide in Pseudomonas aeruginosa
Cited by: 39
Author(s): Shiming Su, Warunya Panmanee, Jeffrey J. Wilson, Harry K. Mahtani, Qian Li, Bradley D. VanderWielen, Thomas M. Makris, Melanie Rogers, Cameron T. McDaniel, John D. Lipscomb, Randall T. Irvin, Michael J. Schurr, Jack R. Lancaster, Rhett A. Kovall, Daniel J. Hassett
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0049225

Structural Variation and Uniformity among Tetraloop-Receptor Interactions and Other Loop-Helix Interactions in RNA Crystal Structures
Cited by: 26
Author(s): Lili Wu, Dinggeng Chai, M.E. Fraser, Steven Zimmerly
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0109366

Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors
Cited by: 25
Author(s): Weiru Wang, Kristi Elkins, Angela Oh, Yew Kam Ho, Jiansheng Wu, Hong Li, Yang Xiao, Mandy Kwong, Mary Coons, B. Brillantes, Elaine Cheng, Lisa Crocker, Peter S. Dragovich, Deepak Sampath, Xiaozhang Zheng, Kenneth W. Bair, Tom O’Brien, Lisa D. Belmont
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0184932

Structure of the human transcobalamin beta domain in four distinct states
Cited by: 5
Author(s): J.S. Bloch, Markus Ruetz, Bernhard Kräutler, Kaspar P. Locher
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0124330

Structural and Biochemical Analysis of Tyrosine Phosphatase Related to Biofilm Formation A (TpbA) from the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
Cited by: 11
Author(s): Kun Xu, Shanshan Li, Wen Yang, Kan Li, Yujia Bai, Yueyang Xu, Jin Jin, Yingying Wang, Mark Bartlam
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0040854

High Resolution Crystal Structure of the Endo-N-Acetyl-β-D-Glucosaminidase Responsible for the Deglycosylation of Hypocrea jecorina Cellulases
Cited by: 25
Author(s): Ingeborg Stals, Saeid Karkehabadi, Steve Kim, Michael P. Ward, Anita Van Landschoot, Bart Devreese, Mats Sandgren
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0168814

Crystal Structure of an Invasivity-Associated Domain of SdrE in S. aureus
Cited by: 4
Author(s): Miao Luo, Xiang Zhang, Shaocheng Zhang, Hongpeng Zhang, Wei Yang, Zhongliang Zhu, Ke Chen, Lei Bai, Jie Wei, Ailong Huang, Deqiang Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0083419

From Knock-Out Phenotype to Three-Dimensional Structure of a Promising Antibiotic Target from Streptococcus pneumoniae
Cited by: 22
Author(s): Con Dogovski, Michael A. Gorman, Natalia E. Ketaren, Judyta Praszkier, Leanne M. Zammit, Haydyn D. T. Mertens, Gary Bryant, Jiyeon Yang, Michael D. W. Griffin, F. Grant Pearce, Juliet A. Gerrard, Geoffrey B. Jameson, Michael W. Parker, Roy M. Robins-Browne, Matthew A. Perugini
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0067409

Crystal Structures of the Sec1/Munc18 (SM) Protein Vps33, Alone and Bound to the Homotypic Fusion and Vacuolar Protein Sorting (HOPS) Subunit Vps16*
Cited by: 51
Author(s): Richard W. Baker, Philip D. Jeffrey, Frederick M. Hughson
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0132004

Potent and Selective Triazole-Based Inhibitors of the Hypoxia-Inducible Factor Prolyl-Hydroxylases with Activity in the Murine Brain
Cited by: 50
Author(s): Mun Chiang Chan, Onur Atasoylu, Emma J. Hodson, Anthony Tumber, Ivanhoe K. H. Leung, Rasheduzzaman Chowdhury, Verónica Gómez-Pérez, Marina Demetriades, Anna M. Rydzik, James P. Holt‐Martyn, Ya-Min Tian, Tammie Bishop, Timothy D. W. Claridge, Akane Kawamura, Christopher W. Pugh, Peter J. Ratcliffe, Christopher J. Schofield
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0012544

Structural and Mutational Analysis of Functional Differentiation between Synaptotagmins-1 and -7
Cited by: 27
Author(s): Mingshan Xue, T.K. Craig, Ok Ho Shin, Liyi Li, Chad A. Brautigam, Diana R. Tomchick, Thomas C. Südhof, Christian Rosenmund, Josep Rizo
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0027466

Structure of the Bro1 Domain Protein BROX and Functional Analyses of the ALIX Bro1 Domain in HIV-1 Budding
Cited by: 27
Author(s): Qianting Zhai, Michael B. Landesman, Howard Robinson, Wesley I. Sundquist, Christopher P. Hill
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0008028

Crystal Structure of Bfr A from Mycobacterium tuberculosis: Incorporation of Selenomethionine Results in Cleavage and Demetallation of Haem
Cited by: 36
Author(s): Vibha Gupta, Rakesh K. Gupta, Garima Khare, Dinakar M. Salunke, Anil K. Tyagi
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0048301

Crystal Structures of Lysine-Preferred Racemases, the Non-Antibiotic Selectable Markers for Transgenic Plants
Cited by: 13
Author(s): Hsin‐Mao Wu, Yi‐Chia Kuan, Chia-Han Chu, Wen-Hwei Hsu, Wen-Ching Wang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0060445

Crystal Structure of KLHL3 in Complex with Cullin3
Cited by: 59
Author(s): Alan X. Ji, Gilbert G. Privé
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0177097

DNA recognition by an RNA-guided bacterial Argonaute
Cited by: 43
Author(s): Kevin W. Doxzen, Jennifer A. Doudna
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0041894

Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis
Cited by: 4
Author(s): Neelanjana Janardan, R.K. Harijan, R.K. Wierenga, M.R.N. Murthy
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0033643

Structural Insights into Human Peroxisome Proliferator Activated Receptor Delta (PPAR-Delta) Selective Ligand Binding
Cited by: 43
Author(s): Fernanda Aparecida Heleno Batista, D.B.B. Trivella, Amanda Bernardes, Joyce Gratieri, Paulo Sérgio Lopes de Oliveira, Ana Carolina M. Figueira, Paul Webb, Igor Polikarpov
Software Mentions: 1
Published: over 12 years ago

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